2025-10-26T19:23:29,105 Created temporary directory: /tmp/pip-ephem-wheel-cache-ifanj5z6
2025-10-26T19:23:29,107 Created temporary directory: /tmp/pip-build-tracker-3vmqtv5q
2025-10-26T19:23:29,107 Initialized build tracking at /tmp/pip-build-tracker-3vmqtv5q
2025-10-26T19:23:29,108 Created build tracker: /tmp/pip-build-tracker-3vmqtv5q
2025-10-26T19:23:29,108 Entered build tracker: /tmp/pip-build-tracker-3vmqtv5q
2025-10-26T19:23:29,109 Created temporary directory: /tmp/pip-wheel-r2xdnb67
2025-10-26T19:23:29,112 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-26T19:23:29,114 Created temporary directory: /tmp/pip-ephem-wheel-cache-_qyd5pu0
2025-10-26T19:23:29,139 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-26T19:23:29,143 2 location(s) to search for versions of boltzgen:
2025-10-26T19:23:29,143 * https://pypi.org/simple/boltzgen/
2025-10-26T19:23:29,143 * https://www.piwheels.org/simple/boltzgen/
2025-10-26T19:23:29,144 Fetching project page and analyzing links: https://pypi.org/simple/boltzgen/
2025-10-26T19:23:29,145 Getting page https://pypi.org/simple/boltzgen/
2025-10-26T19:23:29,146 Found index url https://pypi.org/simple
2025-10-26T19:23:29,359 Fetched page https://pypi.org/simple/boltzgen/ as application/vnd.pypi.simple.v1+json
2025-10-26T19:23:29,360   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/63/90/abce182b30c62f13029523927c04820cfa69e03635c4ab7f2ca01aa64fc8/boltzgen-0.1.0-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T19:23:29,361   Found link https://files.pythonhosted.org/packages/19/6d/3259f594bdc5688261f220b0280facea3a2e497e34609c1d358c40ff26df/boltzgen-0.1.0.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.0
2025-10-26T19:23:29,362 Fetching project page and analyzing links: https://www.piwheels.org/simple/boltzgen/
2025-10-26T19:23:29,363 Getting page https://www.piwheels.org/simple/boltzgen/
2025-10-26T19:23:29,364 Found index url https://www.piwheels.org/simple
2025-10-26T19:23:29,522 Fetched page https://www.piwheels.org/simple/boltzgen/ as text/html
2025-10-26T19:23:29,523 Skipping link: not a file: https://www.piwheels.org/simple/boltzgen/
2025-10-26T19:23:29,524 Skipping link: not a file: https://pypi.org/simple/boltzgen/
2025-10-26T19:23:29,543 Given no hashes to check 1 links for project 'boltzgen': discarding no candidates
2025-10-26T19:23:29,561 Collecting boltzgen==0.1.0
2025-10-26T19:23:29,563   Created temporary directory: /tmp/pip-unpack-fp85wtx8
2025-10-26T19:23:29,776   Downloading boltzgen-0.1.0.tar.gz (288 kB)
2025-10-26T19:23:30,167   Added boltzgen==0.1.0 from https://files.pythonhosted.org/packages/19/6d/3259f594bdc5688261f220b0280facea3a2e497e34609c1d358c40ff26df/boltzgen-0.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-3vmqtv5q'
2025-10-26T19:23:30,173   Created temporary directory: /tmp/pip-build-env-youhos1x
2025-10-26T19:23:30,177   Installing build dependencies: started
2025-10-26T19:23:30,179   Running command pip subprocess to install build dependencies
2025-10-26T19:23:31,340   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-26T19:23:31,956   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-26T19:23:31,979   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-26T19:23:33,735   Collecting setuptools>=40.8.0
2025-10-26T19:23:33,824     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-26T19:23:34,099   Collecting wheel
2025-10-26T19:23:34,116     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-10-26T19:23:36,976   Installing collected packages: wheel, setuptools
2025-10-26T19:23:37,226     Creating /tmp/pip-build-env-youhos1x/overlay/local/bin
2025-10-26T19:23:37,228     changing mode of /tmp/pip-build-env-youhos1x/overlay/local/bin/wheel to 755
2025-10-26T19:23:40,848   Successfully installed setuptools-80.9.0 wheel-0.45.1
2025-10-26T19:23:41,123   Installing build dependencies: finished with status 'done'
2025-10-26T19:23:41,129   Getting requirements to build wheel: started
2025-10-26T19:23:41,131   Running command Getting requirements to build wheel
2025-10-26T19:23:41,844   running egg_info
2025-10-26T19:23:41,851   writing src/boltzgen.egg-info/PKG-INFO
2025-10-26T19:23:41,858   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-10-26T19:23:41,860   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-10-26T19:23:41,864   writing requirements to src/boltzgen.egg-info/requires.txt
2025-10-26T19:23:41,865   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-10-26T19:23:41,917   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T19:23:41,925   adding license file 'LICENSE'
2025-10-26T19:23:41,932   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T19:23:42,031   Getting requirements to build wheel: finished with status 'done'
2025-10-26T19:23:42,034   Created temporary directory: /tmp/pip-modern-metadata-92dlu2b0
2025-10-26T19:23:42,037   Preparing metadata (pyproject.toml): started
2025-10-26T19:23:42,038   Running command Preparing metadata (pyproject.toml)
2025-10-26T19:23:42,703   running dist_info
2025-10-26T19:23:42,715   creating /tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info
2025-10-26T19:23:42,716   writing /tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/PKG-INFO
2025-10-26T19:23:42,723   writing dependency_links to /tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/dependency_links.txt
2025-10-26T19:23:42,725   writing entry points to /tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/entry_points.txt
2025-10-26T19:23:42,729   writing requirements to /tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/requires.txt
2025-10-26T19:23:42,730   writing top-level names to /tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/top_level.txt
2025-10-26T19:23:42,731   writing manifest file '/tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/SOURCES.txt'
2025-10-26T19:23:42,777   reading manifest file '/tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/SOURCES.txt'
2025-10-26T19:23:42,779   adding license file 'LICENSE'
2025-10-26T19:23:42,785   writing manifest file '/tmp/pip-modern-metadata-92dlu2b0/boltzgen.egg-info/SOURCES.txt'
2025-10-26T19:23:42,786   creating '/tmp/pip-modern-metadata-92dlu2b0/boltzgen-0.1.0.dist-info'
2025-10-26T19:23:42,913   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-26T19:23:42,918   Source in /tmp/pip-wheel-r2xdnb67/boltzgen_bc71e3a5e7934b2a95cbb0008296d76f has version 0.1.0, which satisfies requirement boltzgen==0.1.0 from https://files.pythonhosted.org/packages/19/6d/3259f594bdc5688261f220b0280facea3a2e497e34609c1d358c40ff26df/boltzgen-0.1.0.tar.gz
2025-10-26T19:23:42,919   Removed boltzgen==0.1.0 from https://files.pythonhosted.org/packages/19/6d/3259f594bdc5688261f220b0280facea3a2e497e34609c1d358c40ff26df/boltzgen-0.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-3vmqtv5q'
2025-10-26T19:23:42,925 Created temporary directory: /tmp/pip-unpack-7f2ig06a
2025-10-26T19:23:42,925 Building wheels for collected packages: boltzgen
2025-10-26T19:23:42,930   Created temporary directory: /tmp/pip-wheel-1o3qzjqr
2025-10-26T19:23:42,931   Destination directory: /tmp/pip-wheel-1o3qzjqr
2025-10-26T19:23:42,933   Building wheel for boltzgen (pyproject.toml): started
2025-10-26T19:23:42,935   Running command Building wheel for boltzgen (pyproject.toml)
2025-10-26T19:23:43,576   running bdist_wheel
2025-10-26T19:23:43,597   running build
2025-10-26T19:23:43,598   running build_py
2025-10-26T19:23:43,604   creating build/lib/boltzgen
2025-10-26T19:23:43,606   copying src/boltzgen/__init__.py -> build/lib/boltzgen
2025-10-26T19:23:43,609   creating build/lib/boltzgen/data
2025-10-26T19:23:43,610   copying src/boltzgen/data/pad.py -> build/lib/boltzgen/data
2025-10-26T19:23:43,612   copying src/boltzgen/data/rmsd_computation.py -> build/lib/boltzgen/data
2025-10-26T19:23:43,614   copying src/boltzgen/data/__init__.py -> build/lib/boltzgen/data
2025-10-26T19:23:43,616   copying src/boltzgen/data/const.py -> build/lib/boltzgen/data
2025-10-26T19:23:43,619   copying src/boltzgen/data/mol.py -> build/lib/boltzgen/data
2025-10-26T19:23:43,622   copying src/boltzgen/data/data.py -> build/lib/boltzgen/data
2025-10-26T19:23:43,626   creating build/lib/boltzgen/cli
2025-10-26T19:23:43,627   copying src/boltzgen/cli/__init__.py -> build/lib/boltzgen/cli
2025-10-26T19:23:43,629   copying src/boltzgen/cli/boltzgen.py -> build/lib/boltzgen/cli
2025-10-26T19:23:43,632   creating build/lib/boltzgen/utils
2025-10-26T19:23:43,633   copying src/boltzgen/utils/quiet.py -> build/lib/boltzgen/utils
2025-10-26T19:23:43,635   copying src/boltzgen/utils/__init__.py -> build/lib/boltzgen/utils
2025-10-26T19:23:43,637   copying src/boltzgen/utils/pipeline_progress_bar.py -> build/lib/boltzgen/utils
2025-10-26T19:23:43,640   creating build/lib/boltzgen/model
2025-10-26T19:23:43,641   copying src/boltzgen/model/__init__.py -> build/lib/boltzgen/model
2025-10-26T19:23:43,643   creating build/lib/boltzgen/task
2025-10-26T19:23:43,644   copying src/boltzgen/task/__init__.py -> build/lib/boltzgen/task
2025-10-26T19:23:43,646   copying src/boltzgen/task/task.py -> build/lib/boltzgen/task
2025-10-26T19:23:43,649   creating build/lib/boltzgen/data/select
2025-10-26T19:23:43,650   copying src/boltzgen/data/select/__init__.py -> build/lib/boltzgen/data/select
2025-10-26T19:23:43,652   copying src/boltzgen/data/select/selector.py -> build/lib/boltzgen/data/select
2025-10-26T19:23:43,654   copying src/boltzgen/data/select/protein.py -> build/lib/boltzgen/data/select
2025-10-26T19:23:43,657   creating build/lib/boltzgen/data/tokenize
2025-10-26T19:23:43,658   copying src/boltzgen/data/tokenize/__init__.py -> build/lib/boltzgen/data/tokenize
2025-10-26T19:23:43,660   copying src/boltzgen/data/tokenize/tokenizer.py -> build/lib/boltzgen/data/tokenize
2025-10-26T19:23:43,663   creating build/lib/boltzgen/data/crop
2025-10-26T19:23:43,664   copying src/boltzgen/data/crop/cropper.py -> build/lib/boltzgen/data/crop
2025-10-26T19:23:43,666   copying src/boltzgen/data/crop/__init__.py -> build/lib/boltzgen/data/crop
2025-10-26T19:23:43,667   copying src/boltzgen/data/crop/multimer.py -> build/lib/boltzgen/data/crop
2025-10-26T19:23:43,670   creating build/lib/boltzgen/data/sample
2025-10-26T19:23:43,671   copying src/boltzgen/data/sample/cluster.py -> build/lib/boltzgen/data/sample
2025-10-26T19:23:43,674   copying src/boltzgen/data/sample/__init__.py -> build/lib/boltzgen/data/sample
2025-10-26T19:23:43,675   copying src/boltzgen/data/sample/sampler.py -> build/lib/boltzgen/data/sample
2025-10-26T19:23:43,678   creating build/lib/boltzgen/data/filter
2025-10-26T19:23:43,679   copying src/boltzgen/data/filter/__init__.py -> build/lib/boltzgen/data/filter
2025-10-26T19:23:43,681   creating build/lib/boltzgen/data/write
2025-10-26T19:23:43,682   copying src/boltzgen/data/write/pdb.py -> build/lib/boltzgen/data/write
2025-10-26T19:23:43,685   copying src/boltzgen/data/write/__init__.py -> build/lib/boltzgen/data/write
2025-10-26T19:23:43,686   copying src/boltzgen/data/write/mmcif.py -> build/lib/boltzgen/data/write
2025-10-26T19:23:43,689   creating build/lib/boltzgen/data/parse
2025-10-26T19:23:43,690   copying src/boltzgen/data/parse/schema.py -> build/lib/boltzgen/data/parse
2025-10-26T19:23:43,694   copying src/boltzgen/data/parse/__init__.py -> build/lib/boltzgen/data/parse
2025-10-26T19:23:43,696   copying src/boltzgen/data/parse/pdb_parser.py -> build/lib/boltzgen/data/parse
2025-10-26T19:23:43,698   copying src/boltzgen/data/parse/a3m.py -> build/lib/boltzgen/data/parse
2025-10-26T19:23:43,700   copying src/boltzgen/data/parse/mmcif.py -> build/lib/boltzgen/data/parse
2025-10-26T19:23:43,704   creating build/lib/boltzgen/data/template
2025-10-26T19:23:43,705   copying src/boltzgen/data/template/__init__.py -> build/lib/boltzgen/data/template
2025-10-26T19:23:43,707   copying src/boltzgen/data/template/features.py -> build/lib/boltzgen/data/template
2025-10-26T19:23:43,709   creating build/lib/boltzgen/data/feature
2025-10-26T19:23:43,710   copying src/boltzgen/data/feature/__init__.py -> build/lib/boltzgen/data/feature
2025-10-26T19:23:43,712   copying src/boltzgen/data/feature/featurizer.py -> build/lib/boltzgen/data/feature
2025-10-26T19:23:43,716   creating build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,717   copying src/boltzgen/data/filter/dynamic/max_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,719   copying src/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,721   copying src/boltzgen/data/filter/dynamic/filter.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,723   copying src/boltzgen/data/filter/dynamic/__init__.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,725   copying src/boltzgen/data/filter/dynamic/size.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,726   copying src/boltzgen/data/filter/dynamic/date.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,729   copying src/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,730   copying src/boltzgen/data/filter/dynamic/error.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,732   copying src/boltzgen/data/filter/dynamic/confidence.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,734   copying src/boltzgen/data/filter/dynamic/resolution.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T19:23:43,737   creating build/lib/boltzgen/data/filter/static
2025-10-26T19:23:43,738   copying src/boltzgen/data/filter/static/filter.py -> build/lib/boltzgen/data/filter/static
2025-10-26T19:23:43,740   copying src/boltzgen/data/filter/static/polymer.py -> build/lib/boltzgen/data/filter/static
2025-10-26T19:23:43,743   copying src/boltzgen/data/filter/static/__init__.py -> build/lib/boltzgen/data/filter/static
2025-10-26T19:23:43,745   copying src/boltzgen/data/filter/static/ligand.py -> build/lib/boltzgen/data/filter/static
2025-10-26T19:23:43,748   creating build/lib/boltzgen/model/loss
2025-10-26T19:23:43,749   copying src/boltzgen/model/loss/distogram.py -> build/lib/boltzgen/model/loss
2025-10-26T19:23:43,751   copying src/boltzgen/model/loss/bfactor.py -> build/lib/boltzgen/model/loss
2025-10-26T19:23:43,753   copying src/boltzgen/model/loss/__init__.py -> build/lib/boltzgen/model/loss
2025-10-26T19:23:43,754   copying src/boltzgen/model/loss/res_type.py -> build/lib/boltzgen/model/loss
2025-10-26T19:23:43,756   copying src/boltzgen/model/loss/diffusion.py -> build/lib/boltzgen/model/loss
2025-10-26T19:23:43,759   copying src/boltzgen/model/loss/confidence.py -> build/lib/boltzgen/model/loss
2025-10-26T19:23:43,761   copying src/boltzgen/model/loss/validation.py -> build/lib/boltzgen/model/loss
2025-10-26T19:23:43,765   creating build/lib/boltzgen/model/validation
2025-10-26T19:23:43,766   copying src/boltzgen/model/validation/rcsb.py -> build/lib/boltzgen/model/validation
2025-10-26T19:23:43,769   copying src/boltzgen/model/validation/refolding.py -> build/lib/boltzgen/model/validation
2025-10-26T19:23:43,771   copying src/boltzgen/model/validation/design.py -> build/lib/boltzgen/model/validation
2025-10-26T19:23:43,774   copying src/boltzgen/model/validation/validator.py -> build/lib/boltzgen/model/validation
2025-10-26T19:23:43,778   creating build/lib/boltzgen/model/layers
2025-10-26T19:23:43,779   copying src/boltzgen/model/layers/dropout.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,781   copying src/boltzgen/model/layers/attention.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,784   copying src/boltzgen/model/layers/pair_averaging.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,786   copying src/boltzgen/model/layers/pairformer.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,788   copying src/boltzgen/model/layers/initialize.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,790   copying src/boltzgen/model/layers/transition.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,792   copying src/boltzgen/model/layers/__init__.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,794   copying src/boltzgen/model/layers/confidence_utils.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,797   copying src/boltzgen/model/layers/outer_product_mean.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,798   copying src/boltzgen/model/layers/relative.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,800   copying src/boltzgen/model/layers/triangular.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,803   copying src/boltzgen/model/layers/miniformer.py -> build/lib/boltzgen/model/layers
2025-10-26T19:23:43,806   creating build/lib/boltzgen/model/models
2025-10-26T19:23:43,807   copying src/boltzgen/model/models/__init__.py -> build/lib/boltzgen/model/models
2025-10-26T19:23:43,808   copying src/boltzgen/model/models/boltz.py -> build/lib/boltzgen/model/models
2025-10-26T19:23:43,812   creating build/lib/boltzgen/model/kernels
2025-10-26T19:23:43,813   copying src/boltzgen/model/kernels/transition.py -> build/lib/boltzgen/model/kernels
2025-10-26T19:23:43,816   copying src/boltzgen/model/kernels/__init__.py -> build/lib/boltzgen/model/kernels
2025-10-26T19:23:43,818   creating build/lib/boltzgen/model/optim
2025-10-26T19:23:43,819   copying src/boltzgen/model/optim/ema.py -> build/lib/boltzgen/model/optim
2025-10-26T19:23:43,822   copying src/boltzgen/model/optim/__init__.py -> build/lib/boltzgen/model/optim
2025-10-26T19:23:43,823   copying src/boltzgen/model/optim/scheduler.py -> build/lib/boltzgen/model/optim
2025-10-26T19:23:43,826   creating build/lib/boltzgen/model/modules
2025-10-26T19:23:43,827   copying src/boltzgen/model/modules/trunk.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,831   copying src/boltzgen/model/modules/masker.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,833   copying src/boltzgen/model/modules/diffusion_conditioning.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,835   copying src/boltzgen/model/modules/encoders.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,838   copying src/boltzgen/model/modules/inverse_fold.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,841   copying src/boltzgen/model/modules/__init__.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,843   copying src/boltzgen/model/modules/utils.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,845   copying src/boltzgen/model/modules/diffusion.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,849   copying src/boltzgen/model/modules/scatter_utils.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,851   copying src/boltzgen/model/modules/affinity.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,853   copying src/boltzgen/model/modules/confidence.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,856   copying src/boltzgen/model/modules/transformers.py -> build/lib/boltzgen/model/modules
2025-10-26T19:23:43,859   creating build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T19:23:43,860   copying src/boltzgen/model/layers/triangular_attention/attention.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T19:23:43,863   copying src/boltzgen/model/layers/triangular_attention/__init__.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T19:23:43,865   copying src/boltzgen/model/layers/triangular_attention/utils.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T19:23:43,867   copying src/boltzgen/model/layers/triangular_attention/primitives.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T19:23:43,870   creating build/lib/boltzgen/task/filter
2025-10-26T19:23:43,872   copying src/boltzgen/task/filter/filter.py -> build/lib/boltzgen/task/filter
2025-10-26T19:23:43,876   copying src/boltzgen/task/filter/seqplot_utils.py -> build/lib/boltzgen/task/filter
2025-10-26T19:23:43,878   copying src/boltzgen/task/filter/__init__.py -> build/lib/boltzgen/task/filter
2025-10-26T19:23:43,880   creating build/lib/boltzgen/task/analyze
2025-10-26T19:23:43,881   copying src/boltzgen/task/analyze/analyze.py -> build/lib/boltzgen/task/analyze
2025-10-26T19:23:43,885   copying src/boltzgen/task/analyze/analyze_utils.py -> build/lib/boltzgen/task/analyze
2025-10-26T19:23:43,889   creating build/lib/boltzgen/task/predict
2025-10-26T19:23:43,890   copying src/boltzgen/task/predict/__init__.py -> build/lib/boltzgen/task/predict
2025-10-26T19:23:43,891   copying src/boltzgen/task/predict/data_from_generated.py -> build/lib/boltzgen/task/predict
2025-10-26T19:23:43,894   copying src/boltzgen/task/predict/writer.py -> build/lib/boltzgen/task/predict
2025-10-26T19:23:43,897   copying src/boltzgen/task/predict/data_from_yaml.py -> build/lib/boltzgen/task/predict
2025-10-26T19:23:43,899   copying src/boltzgen/task/predict/loading_utils.py -> build/lib/boltzgen/task/predict
2025-10-26T19:23:43,901   copying src/boltzgen/task/predict/predict.py -> build/lib/boltzgen/task/predict
2025-10-26T19:23:43,904   creating build/lib/boltzgen/task/train
2025-10-26T19:23:43,905   copying src/boltzgen/task/train/train.py -> build/lib/boltzgen/task/train
2025-10-26T19:23:43,908   copying src/boltzgen/task/train/__init__.py -> build/lib/boltzgen/task/train
2025-10-26T19:23:43,909   copying src/boltzgen/task/train/data.py -> build/lib/boltzgen/task/train
2025-10-26T19:23:43,912   running egg_info
2025-10-26T19:23:43,925   writing src/boltzgen.egg-info/PKG-INFO
2025-10-26T19:23:43,932   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-10-26T19:23:43,934   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-10-26T19:23:43,937   writing requirements to src/boltzgen.egg-info/requires.txt
2025-10-26T19:23:43,938   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-10-26T19:23:43,973   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T19:23:43,981   adding license file 'LICENSE'
2025-10-26T19:23:43,988   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T19:23:44,027   installing to build/bdist.linux-armv7l/wheel
2025-10-26T19:23:44,027   running install
2025-10-26T19:23:44,051   running install_lib
2025-10-26T19:23:44,057   creating build/bdist.linux-armv7l/wheel
2025-10-26T19:23:44,060   creating build/bdist.linux-armv7l/wheel/boltzgen
2025-10-26T19:23:44,061   copying build/lib/boltzgen/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen
2025-10-26T19:23:44,063   creating build/bdist.linux-armv7l/wheel/boltzgen/data
2025-10-26T19:23:44,065   creating build/bdist.linux-armv7l/wheel/boltzgen/data/select
2025-10-26T19:23:44,066   copying build/lib/boltzgen/data/select/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T19:23:44,068   copying build/lib/boltzgen/data/select/selector.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T19:23:44,070   copying build/lib/boltzgen/data/select/protein.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T19:23:44,073   creating build/bdist.linux-armv7l/wheel/boltzgen/data/tokenize
2025-10-26T19:23:44,074   copying build/lib/boltzgen/data/tokenize/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-10-26T19:23:44,076   copying build/lib/boltzgen/data/tokenize/tokenizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-10-26T19:23:44,079   creating build/bdist.linux-armv7l/wheel/boltzgen/data/crop
2025-10-26T19:23:44,081   copying build/lib/boltzgen/data/crop/cropper.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T19:23:44,083   copying build/lib/boltzgen/data/crop/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T19:23:44,084   copying build/lib/boltzgen/data/crop/multimer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T19:23:44,087   creating build/bdist.linux-armv7l/wheel/boltzgen/data/sample
2025-10-26T19:23:44,088   copying build/lib/boltzgen/data/sample/cluster.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T19:23:44,091   copying build/lib/boltzgen/data/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T19:23:44,092   copying build/lib/boltzgen/data/sample/sampler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T19:23:44,094   copying build/lib/boltzgen/data/pad.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T19:23:44,096   copying build/lib/boltzgen/data/rmsd_computation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T19:23:44,098   copying build/lib/boltzgen/data/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T19:23:44,101   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter
2025-10-26T19:23:44,102   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/dynamic
2025-10-26T19:23:44,104   copying build/lib/boltzgen/data/filter/dynamic/max_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,106   copying build/lib/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,108   copying build/lib/boltzgen/data/filter/dynamic/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,109   copying build/lib/boltzgen/data/filter/dynamic/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,111   copying build/lib/boltzgen/data/filter/dynamic/size.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,113   copying build/lib/boltzgen/data/filter/dynamic/date.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,115   copying build/lib/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,117   copying build/lib/boltzgen/data/filter/dynamic/error.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,119   copying build/lib/boltzgen/data/filter/dynamic/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,121   copying build/lib/boltzgen/data/filter/dynamic/resolution.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T19:23:44,123   copying build/lib/boltzgen/data/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter
2025-10-26T19:23:44,125   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/static
2025-10-26T19:23:44,126   copying build/lib/boltzgen/data/filter/static/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T19:23:44,128   copying build/lib/boltzgen/data/filter/static/polymer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T19:23:44,131   copying build/lib/boltzgen/data/filter/static/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T19:23:44,133   copying build/lib/boltzgen/data/filter/static/ligand.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T19:23:44,134   copying build/lib/boltzgen/data/const.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T19:23:44,139   creating build/bdist.linux-armv7l/wheel/boltzgen/data/write
2025-10-26T19:23:44,140   copying build/lib/boltzgen/data/write/pdb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T19:23:44,143   copying build/lib/boltzgen/data/write/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T19:23:44,144   copying build/lib/boltzgen/data/write/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T19:23:44,147   copying build/lib/boltzgen/data/mol.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T19:23:44,150   creating build/bdist.linux-armv7l/wheel/boltzgen/data/parse
2025-10-26T19:23:44,151   copying build/lib/boltzgen/data/parse/schema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T19:23:44,155   copying build/lib/boltzgen/data/parse/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T19:23:44,157   copying build/lib/boltzgen/data/parse/pdb_parser.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T19:23:44,159   copying build/lib/boltzgen/data/parse/a3m.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T19:23:44,161   copying build/lib/boltzgen/data/parse/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T19:23:44,164   creating build/bdist.linux-armv7l/wheel/boltzgen/data/template
2025-10-26T19:23:44,165   copying build/lib/boltzgen/data/template/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-10-26T19:23:44,167   copying build/lib/boltzgen/data/template/features.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-10-26T19:23:44,169   copying build/lib/boltzgen/data/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T19:23:44,173   creating build/bdist.linux-armv7l/wheel/boltzgen/data/feature
2025-10-26T19:23:44,174   copying build/lib/boltzgen/data/feature/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-10-26T19:23:44,176   copying build/lib/boltzgen/data/feature/featurizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-10-26T19:23:44,180   creating build/bdist.linux-armv7l/wheel/boltzgen/cli
2025-10-26T19:23:44,181   copying build/lib/boltzgen/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-10-26T19:23:44,183   copying build/lib/boltzgen/cli/boltzgen.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-10-26T19:23:44,187   creating build/bdist.linux-armv7l/wheel/boltzgen/utils
2025-10-26T19:23:44,188   copying build/lib/boltzgen/utils/quiet.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T19:23:44,190   copying build/lib/boltzgen/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T19:23:44,192   copying build/lib/boltzgen/utils/pipeline_progress_bar.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T19:23:44,195   creating build/bdist.linux-armv7l/wheel/boltzgen/model
2025-10-26T19:23:44,197   creating build/bdist.linux-armv7l/wheel/boltzgen/model/loss
2025-10-26T19:23:44,198   copying build/lib/boltzgen/model/loss/distogram.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T19:23:44,200   copying build/lib/boltzgen/model/loss/bfactor.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T19:23:44,202   copying build/lib/boltzgen/model/loss/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T19:23:44,204   copying build/lib/boltzgen/model/loss/res_type.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T19:23:44,206   copying build/lib/boltzgen/model/loss/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T19:23:44,209   copying build/lib/boltzgen/model/loss/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T19:23:44,211   copying build/lib/boltzgen/model/loss/validation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T19:23:44,215   creating build/bdist.linux-armv7l/wheel/boltzgen/model/validation
2025-10-26T19:23:44,216   copying build/lib/boltzgen/model/validation/rcsb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T19:23:44,219   copying build/lib/boltzgen/model/validation/refolding.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T19:23:44,221   copying build/lib/boltzgen/model/validation/design.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T19:23:44,224   copying build/lib/boltzgen/model/validation/validator.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T19:23:44,227   copying build/lib/boltzgen/model/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model
2025-10-26T19:23:44,229   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers
2025-10-26T19:23:44,230   copying build/lib/boltzgen/model/layers/dropout.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,233   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers/triangular_attention
2025-10-26T19:23:44,234   copying build/lib/boltzgen/model/layers/triangular_attention/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T19:23:44,236   copying build/lib/boltzgen/model/layers/triangular_attention/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T19:23:44,238   copying build/lib/boltzgen/model/layers/triangular_attention/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T19:23:44,240   copying build/lib/boltzgen/model/layers/triangular_attention/primitives.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T19:23:44,243   copying build/lib/boltzgen/model/layers/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,245   copying build/lib/boltzgen/model/layers/pair_averaging.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,247   copying build/lib/boltzgen/model/layers/pairformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,249   copying build/lib/boltzgen/model/layers/initialize.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,251   copying build/lib/boltzgen/model/layers/transition.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,253   copying build/lib/boltzgen/model/layers/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,255   copying build/lib/boltzgen/model/layers/confidence_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,258   copying build/lib/boltzgen/model/layers/outer_product_mean.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,260   copying build/lib/boltzgen/model/layers/relative.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,262   copying build/lib/boltzgen/model/layers/triangular.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,265   copying build/lib/boltzgen/model/layers/miniformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T19:23:44,267   creating build/bdist.linux-armv7l/wheel/boltzgen/model/models
2025-10-26T19:23:44,268   copying build/lib/boltzgen/model/models/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-10-26T19:23:44,270   copying build/lib/boltzgen/model/models/boltz.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-10-26T19:23:44,275   creating build/bdist.linux-armv7l/wheel/boltzgen/model/kernels
2025-10-26T19:23:44,276   copying build/lib/boltzgen/model/kernels/transition.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/kernels
2025-10-26T19:23:44,279   copying build/lib/boltzgen/model/kernels/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/kernels
2025-10-26T19:23:44,281   creating build/bdist.linux-armv7l/wheel/boltzgen/model/optim
2025-10-26T19:23:44,282   copying build/lib/boltzgen/model/optim/ema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T19:23:44,285   copying build/lib/boltzgen/model/optim/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T19:23:44,286   copying build/lib/boltzgen/model/optim/scheduler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T19:23:44,289   creating build/bdist.linux-armv7l/wheel/boltzgen/model/modules
2025-10-26T19:23:44,290   copying build/lib/boltzgen/model/modules/trunk.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,292   copying build/lib/boltzgen/model/modules/masker.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,294   copying build/lib/boltzgen/model/modules/diffusion_conditioning.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,296   copying build/lib/boltzgen/model/modules/encoders.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,299   copying build/lib/boltzgen/model/modules/inverse_fold.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,301   copying build/lib/boltzgen/model/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,303   copying build/lib/boltzgen/model/modules/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,305   copying build/lib/boltzgen/model/modules/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,308   copying build/lib/boltzgen/model/modules/scatter_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,310   copying build/lib/boltzgen/model/modules/affinity.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,312   copying build/lib/boltzgen/model/modules/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,315   copying build/lib/boltzgen/model/modules/transformers.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T19:23:44,318   creating build/bdist.linux-armv7l/wheel/boltzgen/task
2025-10-26T19:23:44,319   copying build/lib/boltzgen/task/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-10-26T19:23:44,321   creating build/bdist.linux-armv7l/wheel/boltzgen/task/filter
2025-10-26T19:23:44,322   copying build/lib/boltzgen/task/filter/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T19:23:44,326   copying build/lib/boltzgen/task/filter/seqplot_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T19:23:44,329   copying build/lib/boltzgen/task/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T19:23:44,331   creating build/bdist.linux-armv7l/wheel/boltzgen/task/analyze
2025-10-26T19:23:44,332   copying build/lib/boltzgen/task/analyze/analyze.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-10-26T19:23:44,336   copying build/lib/boltzgen/task/analyze/analyze_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-10-26T19:23:44,341   creating build/bdist.linux-armv7l/wheel/boltzgen/task/predict
2025-10-26T19:23:44,342   copying build/lib/boltzgen/task/predict/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T19:23:44,344   copying build/lib/boltzgen/task/predict/data_from_generated.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T19:23:44,347   copying build/lib/boltzgen/task/predict/writer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T19:23:44,350   copying build/lib/boltzgen/task/predict/data_from_yaml.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T19:23:44,353   copying build/lib/boltzgen/task/predict/loading_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T19:23:44,355   copying build/lib/boltzgen/task/predict/predict.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T19:23:44,358   copying build/lib/boltzgen/task/task.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-10-26T19:23:44,361   creating build/bdist.linux-armv7l/wheel/boltzgen/task/train
2025-10-26T19:23:44,362   copying build/lib/boltzgen/task/train/train.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T19:23:44,365   copying build/lib/boltzgen/task/train/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T19:23:44,366   copying build/lib/boltzgen/task/train/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T19:23:44,370   running install_egg_info
2025-10-26T19:23:44,376   Copying src/boltzgen.egg-info to build/bdist.linux-armv7l/wheel/./boltzgen-0.1.0-py3.11.egg-info
2025-10-26T19:23:44,387   running install_scripts
2025-10-26T19:23:44,398   creating build/bdist.linux-armv7l/wheel/boltzgen-0.1.0.dist-info/WHEEL
2025-10-26T19:23:44,401   creating '/tmp/pip-wheel-1o3qzjqr/.tmp-8mzvkia7/boltzgen-0.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-26T19:23:44,403   adding 'boltzgen/__init__.py'
2025-10-26T19:23:44,405   adding 'boltzgen/cli/__init__.py'
2025-10-26T19:23:44,411   adding 'boltzgen/cli/boltzgen.py'
2025-10-26T19:23:44,414   adding 'boltzgen/data/__init__.py'
2025-10-26T19:23:44,422   adding 'boltzgen/data/const.py'
2025-10-26T19:23:44,431   adding 'boltzgen/data/data.py'
2025-10-26T19:23:44,436   adding 'boltzgen/data/mol.py'
2025-10-26T19:23:44,438   adding 'boltzgen/data/pad.py'
2025-10-26T19:23:44,440   adding 'boltzgen/data/rmsd_computation.py'
2025-10-26T19:23:44,442   adding 'boltzgen/data/crop/__init__.py'
2025-10-26T19:23:44,443   adding 'boltzgen/data/crop/cropper.py'
2025-10-26T19:23:44,445   adding 'boltzgen/data/crop/multimer.py'
2025-10-26T19:23:44,447   adding 'boltzgen/data/feature/__init__.py'
2025-10-26T19:23:44,457   adding 'boltzgen/data/feature/featurizer.py'
2025-10-26T19:23:44,460   adding 'boltzgen/data/filter/__init__.py'
2025-10-26T19:23:44,461   adding 'boltzgen/data/filter/dynamic/__init__.py'
2025-10-26T19:23:44,463   adding 'boltzgen/data/filter/dynamic/confidence.py'
2025-10-26T19:23:44,464   adding 'boltzgen/data/filter/dynamic/date.py'
2025-10-26T19:23:44,465   adding 'boltzgen/data/filter/dynamic/error.py'
2025-10-26T19:23:44,466   adding 'boltzgen/data/filter/dynamic/filter.py'
2025-10-26T19:23:44,468   adding 'boltzgen/data/filter/dynamic/max_residues.py'
2025-10-26T19:23:44,469   adding 'boltzgen/data/filter/dynamic/min_protein_residues.py'
2025-10-26T19:23:44,471   adding 'boltzgen/data/filter/dynamic/pdb_id_txtfile.py'
2025-10-26T19:23:44,472   adding 'boltzgen/data/filter/dynamic/resolution.py'
2025-10-26T19:23:44,473   adding 'boltzgen/data/filter/dynamic/size.py'
2025-10-26T19:23:44,475   adding 'boltzgen/data/filter/static/__init__.py'
2025-10-26T19:23:44,476   adding 'boltzgen/data/filter/static/filter.py'
2025-10-26T19:23:44,478   adding 'boltzgen/data/filter/static/ligand.py'
2025-10-26T19:23:44,479   adding 'boltzgen/data/filter/static/polymer.py'
2025-10-26T19:23:44,481   adding 'boltzgen/data/parse/__init__.py'
2025-10-26T19:23:44,483   adding 'boltzgen/data/parse/a3m.py'
2025-10-26T19:23:44,488   adding 'boltzgen/data/parse/mmcif.py'
2025-10-26T19:23:44,490   adding 'boltzgen/data/parse/pdb_parser.py'
2025-10-26T19:23:44,498   adding 'boltzgen/data/parse/schema.py'
2025-10-26T19:23:44,501   adding 'boltzgen/data/sample/__init__.py'
2025-10-26T19:23:44,503   adding 'boltzgen/data/sample/cluster.py'
2025-10-26T19:23:44,504   adding 'boltzgen/data/sample/sampler.py'
2025-10-26T19:23:44,506   adding 'boltzgen/data/select/__init__.py'
2025-10-26T19:23:44,509   adding 'boltzgen/data/select/protein.py'
2025-10-26T19:23:44,510   adding 'boltzgen/data/select/selector.py'
2025-10-26T19:23:44,512   adding 'boltzgen/data/template/__init__.py'
2025-10-26T19:23:44,514   adding 'boltzgen/data/template/features.py'
2025-10-26T19:23:44,515   adding 'boltzgen/data/tokenize/__init__.py'
2025-10-26T19:23:44,518   adding 'boltzgen/data/tokenize/tokenizer.py'
2025-10-26T19:23:44,520   adding 'boltzgen/data/write/__init__.py'
2025-10-26T19:23:44,522   adding 'boltzgen/data/write/mmcif.py'
2025-10-26T19:23:44,524   adding 'boltzgen/data/write/pdb.py'
2025-10-26T19:23:44,526   adding 'boltzgen/model/__init__.py'
2025-10-26T19:23:44,527   adding 'boltzgen/model/kernels/__init__.py'
2025-10-26T19:23:44,529   adding 'boltzgen/model/kernels/transition.py'
2025-10-26T19:23:44,531   adding 'boltzgen/model/layers/__init__.py'
2025-10-26T19:23:44,532   adding 'boltzgen/model/layers/attention.py'
2025-10-26T19:23:44,534   adding 'boltzgen/model/layers/confidence_utils.py'
2025-10-26T19:23:44,535   adding 'boltzgen/model/layers/dropout.py'
2025-10-26T19:23:44,537   adding 'boltzgen/model/layers/initialize.py'
2025-10-26T19:23:44,538   adding 'boltzgen/model/layers/miniformer.py'
2025-10-26T19:23:44,540   adding 'boltzgen/model/layers/outer_product_mean.py'
2025-10-26T19:23:44,541   adding 'boltzgen/model/layers/pair_averaging.py'
2025-10-26T19:23:44,543   adding 'boltzgen/model/layers/pairformer.py'
2025-10-26T19:23:44,544   adding 'boltzgen/model/layers/relative.py'
2025-10-26T19:23:44,546   adding 'boltzgen/model/layers/transition.py'
2025-10-26T19:23:44,548   adding 'boltzgen/model/layers/triangular.py'
2025-10-26T19:23:44,550   adding 'boltzgen/model/layers/triangular_attention/__init__.py'
2025-10-26T19:23:44,551   adding 'boltzgen/model/layers/triangular_attention/attention.py'
2025-10-26T19:23:44,553   adding 'boltzgen/model/layers/triangular_attention/primitives.py'
2025-10-26T19:23:44,555   adding 'boltzgen/model/layers/triangular_attention/utils.py'
2025-10-26T19:23:44,557   adding 'boltzgen/model/loss/__init__.py'
2025-10-26T19:23:44,559   adding 'boltzgen/model/loss/bfactor.py'
2025-10-26T19:23:44,561   adding 'boltzgen/model/loss/confidence.py'
2025-10-26T19:23:44,562   adding 'boltzgen/model/loss/diffusion.py'
2025-10-26T19:23:44,564   adding 'boltzgen/model/loss/distogram.py'
2025-10-26T19:23:44,565   adding 'boltzgen/model/loss/res_type.py'
2025-10-26T19:23:44,570   adding 'boltzgen/model/loss/validation.py'
2025-10-26T19:23:44,572   adding 'boltzgen/model/models/__init__.py'
2025-10-26T19:23:44,578   adding 'boltzgen/model/models/boltz.py'
2025-10-26T19:23:44,580   adding 'boltzgen/model/modules/__init__.py'
2025-10-26T19:23:44,582   adding 'boltzgen/model/modules/affinity.py'
2025-10-26T19:23:44,584   adding 'boltzgen/model/modules/confidence.py'
2025-10-26T19:23:44,588   adding 'boltzgen/model/modules/diffusion.py'
2025-10-26T19:23:44,589   adding 'boltzgen/model/modules/diffusion_conditioning.py'
2025-10-26T19:23:44,592   adding 'boltzgen/model/modules/encoders.py'
2025-10-26T19:23:44,595   adding 'boltzgen/model/modules/inverse_fold.py'
2025-10-26T19:23:44,597   adding 'boltzgen/model/modules/masker.py'
2025-10-26T19:23:44,598   adding 'boltzgen/model/modules/scatter_utils.py'
2025-10-26T19:23:44,600   adding 'boltzgen/model/modules/transformers.py'
2025-10-26T19:23:44,602   adding 'boltzgen/model/modules/trunk.py'
2025-10-26T19:23:44,604   adding 'boltzgen/model/modules/utils.py'
2025-10-26T19:23:44,606   adding 'boltzgen/model/optim/__init__.py'
2025-10-26T19:23:44,608   adding 'boltzgen/model/optim/ema.py'
2025-10-26T19:23:44,610   adding 'boltzgen/model/optim/scheduler.py'
2025-10-26T19:23:44,612   adding 'boltzgen/model/validation/design.py'
2025-10-26T19:23:44,614   adding 'boltzgen/model/validation/rcsb.py'
2025-10-26T19:23:44,616   adding 'boltzgen/model/validation/refolding.py'
2025-10-26T19:23:44,619   adding 'boltzgen/model/validation/validator.py'
2025-10-26T19:23:44,621   adding 'boltzgen/task/__init__.py'
2025-10-26T19:23:44,622   adding 'boltzgen/task/task.py'
2025-10-26T19:23:44,628   adding 'boltzgen/task/analyze/analyze.py'
2025-10-26T19:23:44,634   adding 'boltzgen/task/analyze/analyze_utils.py'
2025-10-26T19:23:44,635   adding 'boltzgen/task/filter/__init__.py'
2025-10-26T19:23:44,641   adding 'boltzgen/task/filter/filter.py'
2025-10-26T19:23:44,644   adding 'boltzgen/task/filter/seqplot_utils.py'
2025-10-26T19:23:44,645   adding 'boltzgen/task/predict/__init__.py'
2025-10-26T19:23:44,649   adding 'boltzgen/task/predict/data_from_generated.py'
2025-10-26T19:23:44,652   adding 'boltzgen/task/predict/data_from_yaml.py'
2025-10-26T19:23:44,653   adding 'boltzgen/task/predict/loading_utils.py'
2025-10-26T19:23:44,654   adding 'boltzgen/task/predict/predict.py'
2025-10-26T19:23:44,657   adding 'boltzgen/task/predict/writer.py'
2025-10-26T19:23:44,658   adding 'boltzgen/task/train/__init__.py'
2025-10-26T19:23:44,662   adding 'boltzgen/task/train/data.py'
2025-10-26T19:23:44,664   adding 'boltzgen/task/train/train.py'
2025-10-26T19:23:44,666   adding 'boltzgen/utils/__init__.py'
2025-10-26T19:23:44,668   adding 'boltzgen/utils/pipeline_progress_bar.py'
2025-10-26T19:23:44,669   adding 'boltzgen/utils/quiet.py'
2025-10-26T19:23:44,671   adding 'boltzgen-0.1.0.dist-info/licenses/LICENSE'
2025-10-26T19:23:44,672   adding 'boltzgen-0.1.0.dist-info/METADATA'
2025-10-26T19:23:44,673   adding 'boltzgen-0.1.0.dist-info/WHEEL'
2025-10-26T19:23:44,674   adding 'boltzgen-0.1.0.dist-info/entry_points.txt'
2025-10-26T19:23:44,675   adding 'boltzgen-0.1.0.dist-info/top_level.txt'
2025-10-26T19:23:44,677   adding 'boltzgen-0.1.0.dist-info/RECORD'
2025-10-26T19:23:44,684   removing build/bdist.linux-armv7l/wheel
2025-10-26T19:23:44,820   Building wheel for boltzgen (pyproject.toml): finished with status 'done'
2025-10-26T19:23:44,831   Created wheel for boltzgen: filename=boltzgen-0.1.0-py3-none-any.whl size=318865 sha256=4c742030a0a07bb98c68ee543aad9b9d01c4a673e62ba78cab124ed43a91b644
2025-10-26T19:23:44,832   Stored in directory: /tmp/pip-ephem-wheel-cache-_qyd5pu0/wheels/f8/75/5b/0c5dab6609da8c9daa4e40f9f98d61db15de51c004b56d8927
2025-10-26T19:23:44,846 Successfully built boltzgen
2025-10-26T19:23:44,858 Removed build tracker: '/tmp/pip-build-tracker-3vmqtv5q'