2025-10-26T21:32:47,855 Created temporary directory: /tmp/pip-ephem-wheel-cache-6qgda_gv
2025-10-26T21:32:47,857 Created temporary directory: /tmp/pip-build-tracker-fa3eljav
2025-10-26T21:32:47,858 Initialized build tracking at /tmp/pip-build-tracker-fa3eljav
2025-10-26T21:32:47,858 Created build tracker: /tmp/pip-build-tracker-fa3eljav
2025-10-26T21:32:47,859 Entered build tracker: /tmp/pip-build-tracker-fa3eljav
2025-10-26T21:32:47,860 Created temporary directory: /tmp/pip-wheel-5gn_tb3n
2025-10-26T21:32:47,863 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-26T21:32:47,865 Created temporary directory: /tmp/pip-ephem-wheel-cache-v0ms4l_e
2025-10-26T21:32:47,888 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-26T21:32:47,891 2 location(s) to search for versions of boltzgen:
2025-10-26T21:32:47,891 * https://pypi.org/simple/boltzgen/
2025-10-26T21:32:47,891 * https://www.piwheels.org/simple/boltzgen/
2025-10-26T21:32:47,892 Fetching project page and analyzing links: https://pypi.org/simple/boltzgen/
2025-10-26T21:32:47,893 Getting page https://pypi.org/simple/boltzgen/
2025-10-26T21:32:47,895 Found index url https://pypi.org/simple
2025-10-26T21:32:48,034 Fetched page https://pypi.org/simple/boltzgen/ as application/vnd.pypi.simple.v1+json
2025-10-26T21:32:48,036   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/63/90/abce182b30c62f13029523927c04820cfa69e03635c4ab7f2ca01aa64fc8/boltzgen-0.1.0-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T21:32:48,037   Found link https://files.pythonhosted.org/packages/19/6d/3259f594bdc5688261f220b0280facea3a2e497e34609c1d358c40ff26df/boltzgen-0.1.0.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.0
2025-10-26T21:32:48,038   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/b9/e1/bea73eb825594a48e824a59ea2484c0748020a9713c5b2503d7cfe033c2b/boltzgen-0.1.1-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T21:32:48,039   Found link https://files.pythonhosted.org/packages/78/94/91e0892caf7d08ad1ee432f2d64d07f0bb4cc5fa53a010b2995db7a90dbf/boltzgen-0.1.1.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.1
2025-10-26T21:32:48,040   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/74/06/6834e94921b9a5c978a3b6014e20db1dc528e5b67d0dcad0f8f47836908c/boltzgen-0.1.2-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T21:32:48,041   Found link https://files.pythonhosted.org/packages/20/02/6579821c7da06745452f2ecb95605dce1b8de1658d1dd4be5c6c3b970208/boltzgen-0.1.2.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.2
2025-10-26T21:32:48,042 Fetching project page and analyzing links: https://www.piwheels.org/simple/boltzgen/
2025-10-26T21:32:48,042 Getting page https://www.piwheels.org/simple/boltzgen/
2025-10-26T21:32:48,043 Found index url https://www.piwheels.org/simple
2025-10-26T21:32:48,201 Fetched page https://www.piwheels.org/simple/boltzgen/ as text/html
2025-10-26T21:32:48,202   Skipping link: No binaries permitted for boltzgen: https://www.piwheels.org/simple/boltzgen/boltzgen-0.1.0-py3-none-any.whl#sha256=4c742030a0a07bb98c68ee543aad9b9d01c4a673e62ba78cab124ed43a91b644 (from https://www.piwheels.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T21:32:48,203 Skipping link: not a file: https://www.piwheels.org/simple/boltzgen/
2025-10-26T21:32:48,204 Skipping link: not a file: https://pypi.org/simple/boltzgen/
2025-10-26T21:32:48,223 Given no hashes to check 1 links for project 'boltzgen': discarding no candidates
2025-10-26T21:32:48,241 Collecting boltzgen==0.1.1
2025-10-26T21:32:48,244   Created temporary directory: /tmp/pip-unpack-lh0w1xrx
2025-10-26T21:32:48,381   Downloading boltzgen-0.1.1.tar.gz (285 kB)
2025-10-26T21:32:48,743   Added boltzgen==0.1.1 from https://files.pythonhosted.org/packages/78/94/91e0892caf7d08ad1ee432f2d64d07f0bb4cc5fa53a010b2995db7a90dbf/boltzgen-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-fa3eljav'
2025-10-26T21:32:48,749   Created temporary directory: /tmp/pip-build-env-wywplt1b
2025-10-26T21:32:48,754   Installing build dependencies: started
2025-10-26T21:32:48,755   Running command pip subprocess to install build dependencies
2025-10-26T21:32:49,901   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-26T21:32:50,513   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-26T21:32:50,538   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-26T21:32:52,309   Collecting setuptools>=40.8.0
2025-10-26T21:32:52,400     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-26T21:32:52,687   Collecting wheel
2025-10-26T21:32:52,703     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-10-26T21:32:55,623   Installing collected packages: wheel, setuptools
2025-10-26T21:32:55,872     Creating /tmp/pip-build-env-wywplt1b/overlay/local/bin
2025-10-26T21:32:55,874     changing mode of /tmp/pip-build-env-wywplt1b/overlay/local/bin/wheel to 755
2025-10-26T21:32:59,631   Successfully installed setuptools-80.9.0 wheel-0.45.1
2025-10-26T21:32:59,905   Installing build dependencies: finished with status 'done'
2025-10-26T21:32:59,911   Getting requirements to build wheel: started
2025-10-26T21:32:59,913   Running command Getting requirements to build wheel
2025-10-26T21:33:00,653   running egg_info
2025-10-26T21:33:00,659   writing src/boltzgen.egg-info/PKG-INFO
2025-10-26T21:33:00,667   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-10-26T21:33:00,669   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-10-26T21:33:00,673   writing requirements to src/boltzgen.egg-info/requires.txt
2025-10-26T21:33:00,674   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-10-26T21:33:00,728   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T21:33:00,736   adding license file 'LICENSE'
2025-10-26T21:33:00,744   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T21:33:00,841   Getting requirements to build wheel: finished with status 'done'
2025-10-26T21:33:00,845   Created temporary directory: /tmp/pip-modern-metadata-m9pjls33
2025-10-26T21:33:00,847   Preparing metadata (pyproject.toml): started
2025-10-26T21:33:00,848   Running command Preparing metadata (pyproject.toml)
2025-10-26T21:33:01,515   running dist_info
2025-10-26T21:33:01,527   creating /tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info
2025-10-26T21:33:01,528   writing /tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/PKG-INFO
2025-10-26T21:33:01,535   writing dependency_links to /tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/dependency_links.txt
2025-10-26T21:33:01,537   writing entry points to /tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/entry_points.txt
2025-10-26T21:33:01,541   writing requirements to /tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/requires.txt
2025-10-26T21:33:01,542   writing top-level names to /tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/top_level.txt
2025-10-26T21:33:01,544   writing manifest file '/tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/SOURCES.txt'
2025-10-26T21:33:01,589   reading manifest file '/tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/SOURCES.txt'
2025-10-26T21:33:01,592   adding license file 'LICENSE'
2025-10-26T21:33:01,598   writing manifest file '/tmp/pip-modern-metadata-m9pjls33/boltzgen.egg-info/SOURCES.txt'
2025-10-26T21:33:01,599   creating '/tmp/pip-modern-metadata-m9pjls33/boltzgen-0.1.1.dist-info'
2025-10-26T21:33:01,727   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-26T21:33:01,731   Source in /tmp/pip-wheel-5gn_tb3n/boltzgen_5869a311d9e6488b8313b4019562a859 has version 0.1.1, which satisfies requirement boltzgen==0.1.1 from https://files.pythonhosted.org/packages/78/94/91e0892caf7d08ad1ee432f2d64d07f0bb4cc5fa53a010b2995db7a90dbf/boltzgen-0.1.1.tar.gz
2025-10-26T21:33:01,732   Removed boltzgen==0.1.1 from https://files.pythonhosted.org/packages/78/94/91e0892caf7d08ad1ee432f2d64d07f0bb4cc5fa53a010b2995db7a90dbf/boltzgen-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-fa3eljav'
2025-10-26T21:33:01,737 Created temporary directory: /tmp/pip-unpack-3ox0973p
2025-10-26T21:33:01,738 Building wheels for collected packages: boltzgen
2025-10-26T21:33:01,742   Created temporary directory: /tmp/pip-wheel-uqb848dn
2025-10-26T21:33:01,743   Destination directory: /tmp/pip-wheel-uqb848dn
2025-10-26T21:33:01,745   Building wheel for boltzgen (pyproject.toml): started
2025-10-26T21:33:01,746   Running command Building wheel for boltzgen (pyproject.toml)
2025-10-26T21:33:02,386   running bdist_wheel
2025-10-26T21:33:02,407   running build
2025-10-26T21:33:02,408   running build_py
2025-10-26T21:33:02,414   creating build/lib/boltzgen
2025-10-26T21:33:02,416   copying src/boltzgen/__init__.py -> build/lib/boltzgen
2025-10-26T21:33:02,419   creating build/lib/boltzgen/task
2025-10-26T21:33:02,420   copying src/boltzgen/task/__init__.py -> build/lib/boltzgen/task
2025-10-26T21:33:02,422   copying src/boltzgen/task/task.py -> build/lib/boltzgen/task
2025-10-26T21:33:02,424   creating build/lib/boltzgen/utils
2025-10-26T21:33:02,425   copying src/boltzgen/utils/__init__.py -> build/lib/boltzgen/utils
2025-10-26T21:33:02,427   copying src/boltzgen/utils/pipeline_progress_bar.py -> build/lib/boltzgen/utils
2025-10-26T21:33:02,430   copying src/boltzgen/utils/quiet.py -> build/lib/boltzgen/utils
2025-10-26T21:33:02,432   creating build/lib/boltzgen/cli
2025-10-26T21:33:02,433   copying src/boltzgen/cli/__init__.py -> build/lib/boltzgen/cli
2025-10-26T21:33:02,435   copying src/boltzgen/cli/boltzgen.py -> build/lib/boltzgen/cli
2025-10-26T21:33:02,438   creating build/lib/boltzgen/model
2025-10-26T21:33:02,439   copying src/boltzgen/model/__init__.py -> build/lib/boltzgen/model
2025-10-26T21:33:02,442   creating build/lib/boltzgen/data
2025-10-26T21:33:02,443   copying src/boltzgen/data/__init__.py -> build/lib/boltzgen/data
2025-10-26T21:33:02,445   copying src/boltzgen/data/const.py -> build/lib/boltzgen/data
2025-10-26T21:33:02,448   copying src/boltzgen/data/data.py -> build/lib/boltzgen/data
2025-10-26T21:33:02,452   copying src/boltzgen/data/mol.py -> build/lib/boltzgen/data
2025-10-26T21:33:02,455   copying src/boltzgen/data/pad.py -> build/lib/boltzgen/data
2025-10-26T21:33:02,457   copying src/boltzgen/data/rmsd_computation.py -> build/lib/boltzgen/data
2025-10-26T21:33:02,459   creating build/lib/boltzgen/task/analyze
2025-10-26T21:33:02,460   copying src/boltzgen/task/analyze/analyze_utils.py -> build/lib/boltzgen/task/analyze
2025-10-26T21:33:02,464   copying src/boltzgen/task/analyze/analyze.py -> build/lib/boltzgen/task/analyze
2025-10-26T21:33:02,468   creating build/lib/boltzgen/task/filter
2025-10-26T21:33:02,469   copying src/boltzgen/task/filter/__init__.py -> build/lib/boltzgen/task/filter
2025-10-26T21:33:02,470   copying src/boltzgen/task/filter/filter.py -> build/lib/boltzgen/task/filter
2025-10-26T21:33:02,473   copying src/boltzgen/task/filter/seqplot_utils.py -> build/lib/boltzgen/task/filter
2025-10-26T21:33:02,477   creating build/lib/boltzgen/task/predict
2025-10-26T21:33:02,478   copying src/boltzgen/task/predict/loading_utils.py -> build/lib/boltzgen/task/predict
2025-10-26T21:33:02,480   copying src/boltzgen/task/predict/predict.py -> build/lib/boltzgen/task/predict
2025-10-26T21:33:02,482   copying src/boltzgen/task/predict/__init__.py -> build/lib/boltzgen/task/predict
2025-10-26T21:33:02,484   copying src/boltzgen/task/predict/writer.py -> build/lib/boltzgen/task/predict
2025-10-26T21:33:02,486   copying src/boltzgen/task/predict/data_from_yaml.py -> build/lib/boltzgen/task/predict
2025-10-26T21:33:02,489   copying src/boltzgen/task/predict/data_from_generated.py -> build/lib/boltzgen/task/predict
2025-10-26T21:33:02,492   creating build/lib/boltzgen/task/train
2025-10-26T21:33:02,493   copying src/boltzgen/task/train/__init__.py -> build/lib/boltzgen/task/train
2025-10-26T21:33:02,495   copying src/boltzgen/task/train/train.py -> build/lib/boltzgen/task/train
2025-10-26T21:33:02,498   copying src/boltzgen/task/train/data.py -> build/lib/boltzgen/task/train
2025-10-26T21:33:02,501   creating build/lib/boltzgen/model/optim
2025-10-26T21:33:02,502   copying src/boltzgen/model/optim/scheduler.py -> build/lib/boltzgen/model/optim
2025-10-26T21:33:02,504   copying src/boltzgen/model/optim/__init__.py -> build/lib/boltzgen/model/optim
2025-10-26T21:33:02,505   copying src/boltzgen/model/optim/ema.py -> build/lib/boltzgen/model/optim
2025-10-26T21:33:02,508   creating build/lib/boltzgen/model/modules
2025-10-26T21:33:02,509   copying src/boltzgen/model/modules/confidence.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,512   copying src/boltzgen/model/modules/utils.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,514   copying src/boltzgen/model/modules/__init__.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,516   copying src/boltzgen/model/modules/trunk.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,519   copying src/boltzgen/model/modules/affinity.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,521   copying src/boltzgen/model/modules/diffusion.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,524   copying src/boltzgen/model/modules/diffusion_conditioning.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,526   copying src/boltzgen/model/modules/inverse_fold.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,528   copying src/boltzgen/model/modules/scatter_utils.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,531   copying src/boltzgen/model/modules/encoders.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,533   copying src/boltzgen/model/modules/transformers.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,536   copying src/boltzgen/model/modules/masker.py -> build/lib/boltzgen/model/modules
2025-10-26T21:33:02,539   creating build/lib/boltzgen/model/layers
2025-10-26T21:33:02,540   copying src/boltzgen/model/layers/outer_product_mean.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,542   copying src/boltzgen/model/layers/__init__.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,543   copying src/boltzgen/model/layers/pair_averaging.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,545   copying src/boltzgen/model/layers/triangular.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,548   copying src/boltzgen/model/layers/dropout.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,550   copying src/boltzgen/model/layers/transition.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,552   copying src/boltzgen/model/layers/relative.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,554   copying src/boltzgen/model/layers/attention.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,556   copying src/boltzgen/model/layers/pairformer.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,559   copying src/boltzgen/model/layers/miniformer.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,561   copying src/boltzgen/model/layers/confidence_utils.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,564   copying src/boltzgen/model/layers/initialize.py -> build/lib/boltzgen/model/layers
2025-10-26T21:33:02,566   creating build/lib/boltzgen/model/models
2025-10-26T21:33:02,567   copying src/boltzgen/model/models/boltz.py -> build/lib/boltzgen/model/models
2025-10-26T21:33:02,570   copying src/boltzgen/model/models/__init__.py -> build/lib/boltzgen/model/models
2025-10-26T21:33:02,573   creating build/lib/boltzgen/model/loss
2025-10-26T21:33:02,574   copying src/boltzgen/model/loss/confidence.py -> build/lib/boltzgen/model/loss
2025-10-26T21:33:02,576   copying src/boltzgen/model/loss/__init__.py -> build/lib/boltzgen/model/loss
2025-10-26T21:33:02,578   copying src/boltzgen/model/loss/bfactor.py -> build/lib/boltzgen/model/loss
2025-10-26T21:33:02,580   copying src/boltzgen/model/loss/diffusion.py -> build/lib/boltzgen/model/loss
2025-10-26T21:33:02,582   copying src/boltzgen/model/loss/res_type.py -> build/lib/boltzgen/model/loss
2025-10-26T21:33:02,584   copying src/boltzgen/model/loss/validation.py -> build/lib/boltzgen/model/loss
2025-10-26T21:33:02,587   copying src/boltzgen/model/loss/distogram.py -> build/lib/boltzgen/model/loss
2025-10-26T21:33:02,589   creating build/lib/boltzgen/model/validation
2025-10-26T21:33:02,590   copying src/boltzgen/model/validation/design.py -> build/lib/boltzgen/model/validation
2025-10-26T21:33:02,593   copying src/boltzgen/model/validation/rcsb.py -> build/lib/boltzgen/model/validation
2025-10-26T21:33:02,595   copying src/boltzgen/model/validation/validator.py -> build/lib/boltzgen/model/validation
2025-10-26T21:33:02,598   copying src/boltzgen/model/validation/refolding.py -> build/lib/boltzgen/model/validation
2025-10-26T21:33:02,600   creating build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,601   copying src/boltzgen/model/layers/triangular_attention/utils.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,604   copying src/boltzgen/model/layers/triangular_attention/__init__.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,605   copying src/boltzgen/model/layers/triangular_attention/primitives.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,608   copying src/boltzgen/model/layers/triangular_attention/attention.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,611   creating build/lib/boltzgen/data/tokenize
2025-10-26T21:33:02,612   copying src/boltzgen/data/tokenize/__init__.py -> build/lib/boltzgen/data/tokenize
2025-10-26T21:33:02,613   copying src/boltzgen/data/tokenize/tokenizer.py -> build/lib/boltzgen/data/tokenize
2025-10-26T21:33:02,616   creating build/lib/boltzgen/data/select
2025-10-26T21:33:02,617   copying src/boltzgen/data/select/__init__.py -> build/lib/boltzgen/data/select
2025-10-26T21:33:02,619   copying src/boltzgen/data/select/selector.py -> build/lib/boltzgen/data/select
2025-10-26T21:33:02,621   copying src/boltzgen/data/select/protein.py -> build/lib/boltzgen/data/select
2025-10-26T21:33:02,624   creating build/lib/boltzgen/data/sample
2025-10-26T21:33:02,625   copying src/boltzgen/data/sample/cluster.py -> build/lib/boltzgen/data/sample
2025-10-26T21:33:02,628   copying src/boltzgen/data/sample/__init__.py -> build/lib/boltzgen/data/sample
2025-10-26T21:33:02,629   copying src/boltzgen/data/sample/sampler.py -> build/lib/boltzgen/data/sample
2025-10-26T21:33:02,632   creating build/lib/boltzgen/data/feature
2025-10-26T21:33:02,633   copying src/boltzgen/data/feature/__init__.py -> build/lib/boltzgen/data/feature
2025-10-26T21:33:02,634   copying src/boltzgen/data/feature/featurizer.py -> build/lib/boltzgen/data/feature
2025-10-26T21:33:02,639   creating build/lib/boltzgen/data/crop
2025-10-26T21:33:02,640   copying src/boltzgen/data/crop/multimer.py -> build/lib/boltzgen/data/crop
2025-10-26T21:33:02,643   copying src/boltzgen/data/crop/__init__.py -> build/lib/boltzgen/data/crop
2025-10-26T21:33:02,645   copying src/boltzgen/data/crop/cropper.py -> build/lib/boltzgen/data/crop
2025-10-26T21:33:02,647   creating build/lib/boltzgen/data/write
2025-10-26T21:33:02,648   copying src/boltzgen/data/write/pdb.py -> build/lib/boltzgen/data/write
2025-10-26T21:33:02,651   copying src/boltzgen/data/write/mmcif.py -> build/lib/boltzgen/data/write
2025-10-26T21:33:02,653   copying src/boltzgen/data/write/__init__.py -> build/lib/boltzgen/data/write
2025-10-26T21:33:02,655   creating build/lib/boltzgen/data/filter
2025-10-26T21:33:02,657   copying src/boltzgen/data/filter/__init__.py -> build/lib/boltzgen/data/filter
2025-10-26T21:33:02,659   creating build/lib/boltzgen/data/parse
2025-10-26T21:33:02,659   copying src/boltzgen/data/parse/schema.py -> build/lib/boltzgen/data/parse
2025-10-26T21:33:02,663   copying src/boltzgen/data/parse/pdb_parser.py -> build/lib/boltzgen/data/parse
2025-10-26T21:33:02,665   copying src/boltzgen/data/parse/mmcif.py -> build/lib/boltzgen/data/parse
2025-10-26T21:33:02,668   copying src/boltzgen/data/parse/__init__.py -> build/lib/boltzgen/data/parse
2025-10-26T21:33:02,670   copying src/boltzgen/data/parse/a3m.py -> build/lib/boltzgen/data/parse
2025-10-26T21:33:02,672   creating build/lib/boltzgen/data/template
2025-10-26T21:33:02,673   copying src/boltzgen/data/template/__init__.py -> build/lib/boltzgen/data/template
2025-10-26T21:33:02,675   copying src/boltzgen/data/template/features.py -> build/lib/boltzgen/data/template
2025-10-26T21:33:02,677   creating build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,678   copying src/boltzgen/data/filter/dynamic/confidence.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,680   copying src/boltzgen/data/filter/dynamic/__init__.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,682   copying src/boltzgen/data/filter/dynamic/size.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,684   copying src/boltzgen/data/filter/dynamic/resolution.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,685   copying src/boltzgen/data/filter/dynamic/max_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,687   copying src/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,689   copying src/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,691   copying src/boltzgen/data/filter/dynamic/filter.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,693   copying src/boltzgen/data/filter/dynamic/error.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,695   copying src/boltzgen/data/filter/dynamic/date.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T21:33:02,698   creating build/lib/boltzgen/data/filter/static
2025-10-26T21:33:02,699   copying src/boltzgen/data/filter/static/__init__.py -> build/lib/boltzgen/data/filter/static
2025-10-26T21:33:02,701   copying src/boltzgen/data/filter/static/filter.py -> build/lib/boltzgen/data/filter/static
2025-10-26T21:33:02,703   copying src/boltzgen/data/filter/static/ligand.py -> build/lib/boltzgen/data/filter/static
2025-10-26T21:33:02,705   copying src/boltzgen/data/filter/static/polymer.py -> build/lib/boltzgen/data/filter/static
2025-10-26T21:33:02,708   running egg_info
2025-10-26T21:33:02,720   writing src/boltzgen.egg-info/PKG-INFO
2025-10-26T21:33:02,727   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-10-26T21:33:02,729   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-10-26T21:33:02,732   writing requirements to src/boltzgen.egg-info/requires.txt
2025-10-26T21:33:02,733   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-10-26T21:33:02,767   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T21:33:02,775   adding license file 'LICENSE'
2025-10-26T21:33:02,782   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T21:33:02,820   installing to build/bdist.linux-armv7l/wheel
2025-10-26T21:33:02,820   running install
2025-10-26T21:33:02,844   running install_lib
2025-10-26T21:33:02,851   creating build/bdist.linux-armv7l/wheel
2025-10-26T21:33:02,853   creating build/bdist.linux-armv7l/wheel/boltzgen
2025-10-26T21:33:02,855   creating build/bdist.linux-armv7l/wheel/boltzgen/task
2025-10-26T21:33:02,856   copying build/lib/boltzgen/task/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-10-26T21:33:02,859   creating build/bdist.linux-armv7l/wheel/boltzgen/task/analyze
2025-10-26T21:33:02,860   copying build/lib/boltzgen/task/analyze/analyze_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-10-26T21:33:02,863   copying build/lib/boltzgen/task/analyze/analyze.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-10-26T21:33:02,867   creating build/bdist.linux-armv7l/wheel/boltzgen/task/filter
2025-10-26T21:33:02,868   copying build/lib/boltzgen/task/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T21:33:02,869   copying build/lib/boltzgen/task/filter/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T21:33:02,872   copying build/lib/boltzgen/task/filter/seqplot_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T21:33:02,875   creating build/bdist.linux-armv7l/wheel/boltzgen/task/predict
2025-10-26T21:33:02,876   copying build/lib/boltzgen/task/predict/loading_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T21:33:02,878   copying build/lib/boltzgen/task/predict/predict.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T21:33:02,881   copying build/lib/boltzgen/task/predict/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T21:33:02,882   copying build/lib/boltzgen/task/predict/writer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T21:33:02,885   copying build/lib/boltzgen/task/predict/data_from_yaml.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T21:33:02,887   copying build/lib/boltzgen/task/predict/data_from_generated.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T21:33:02,890   creating build/bdist.linux-armv7l/wheel/boltzgen/task/train
2025-10-26T21:33:02,891   copying build/lib/boltzgen/task/train/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T21:33:02,893   copying build/lib/boltzgen/task/train/train.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T21:33:02,895   copying build/lib/boltzgen/task/train/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T21:33:02,898   copying build/lib/boltzgen/task/task.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-10-26T21:33:02,901   creating build/bdist.linux-armv7l/wheel/boltzgen/utils
2025-10-26T21:33:02,902   copying build/lib/boltzgen/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T21:33:02,904   copying build/lib/boltzgen/utils/pipeline_progress_bar.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T21:33:02,906   copying build/lib/boltzgen/utils/quiet.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T21:33:02,908   copying build/lib/boltzgen/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen
2025-10-26T21:33:02,910   creating build/bdist.linux-armv7l/wheel/boltzgen/cli
2025-10-26T21:33:02,911   copying build/lib/boltzgen/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-10-26T21:33:02,912   copying build/lib/boltzgen/cli/boltzgen.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-10-26T21:33:02,916   creating build/bdist.linux-armv7l/wheel/boltzgen/model
2025-10-26T21:33:02,917   copying build/lib/boltzgen/model/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model
2025-10-26T21:33:02,919   creating build/bdist.linux-armv7l/wheel/boltzgen/model/optim
2025-10-26T21:33:02,920   copying build/lib/boltzgen/model/optim/scheduler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T21:33:02,923   copying build/lib/boltzgen/model/optim/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T21:33:02,924   copying build/lib/boltzgen/model/optim/ema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T21:33:02,927   creating build/bdist.linux-armv7l/wheel/boltzgen/model/modules
2025-10-26T21:33:02,928   copying build/lib/boltzgen/model/modules/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,931   copying build/lib/boltzgen/model/modules/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,933   copying build/lib/boltzgen/model/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,935   copying build/lib/boltzgen/model/modules/trunk.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,938   copying build/lib/boltzgen/model/modules/affinity.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,940   copying build/lib/boltzgen/model/modules/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,943   copying build/lib/boltzgen/model/modules/diffusion_conditioning.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,945   copying build/lib/boltzgen/model/modules/inverse_fold.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,948   copying build/lib/boltzgen/model/modules/scatter_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,950   copying build/lib/boltzgen/model/modules/encoders.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,952   copying build/lib/boltzgen/model/modules/transformers.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,955   copying build/lib/boltzgen/model/modules/masker.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T21:33:02,958   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers
2025-10-26T21:33:02,959   copying build/lib/boltzgen/model/layers/outer_product_mean.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,961   copying build/lib/boltzgen/model/layers/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,962   copying build/lib/boltzgen/model/layers/pair_averaging.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,965   copying build/lib/boltzgen/model/layers/triangular.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,967   copying build/lib/boltzgen/model/layers/dropout.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,969   copying build/lib/boltzgen/model/layers/transition.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,971   copying build/lib/boltzgen/model/layers/relative.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,973   copying build/lib/boltzgen/model/layers/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,975   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,976   copying build/lib/boltzgen/model/layers/triangular_attention/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,979   copying build/lib/boltzgen/model/layers/triangular_attention/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,981   copying build/lib/boltzgen/model/layers/triangular_attention/primitives.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,983   copying build/lib/boltzgen/model/layers/triangular_attention/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T21:33:02,986   copying build/lib/boltzgen/model/layers/pairformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,988   copying build/lib/boltzgen/model/layers/miniformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,991   copying build/lib/boltzgen/model/layers/confidence_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,994   copying build/lib/boltzgen/model/layers/initialize.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T21:33:02,996   creating build/bdist.linux-armv7l/wheel/boltzgen/model/models
2025-10-26T21:33:02,997   copying build/lib/boltzgen/model/models/boltz.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-10-26T21:33:03,001   copying build/lib/boltzgen/model/models/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-10-26T21:33:03,003   creating build/bdist.linux-armv7l/wheel/boltzgen/model/loss
2025-10-26T21:33:03,004   copying build/lib/boltzgen/model/loss/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T21:33:03,007   copying build/lib/boltzgen/model/loss/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T21:33:03,008   copying build/lib/boltzgen/model/loss/bfactor.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T21:33:03,010   copying build/lib/boltzgen/model/loss/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T21:33:03,012   copying build/lib/boltzgen/model/loss/res_type.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T21:33:03,014   copying build/lib/boltzgen/model/loss/validation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T21:33:03,018   copying build/lib/boltzgen/model/loss/distogram.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T21:33:03,020   creating build/bdist.linux-armv7l/wheel/boltzgen/model/validation
2025-10-26T21:33:03,021   copying build/lib/boltzgen/model/validation/design.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T21:33:03,024   copying build/lib/boltzgen/model/validation/rcsb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T21:33:03,026   copying build/lib/boltzgen/model/validation/validator.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T21:33:03,029   copying build/lib/boltzgen/model/validation/refolding.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T21:33:03,032   creating build/bdist.linux-armv7l/wheel/boltzgen/data
2025-10-26T21:33:03,033   creating build/bdist.linux-armv7l/wheel/boltzgen/data/tokenize
2025-10-26T21:33:03,035   copying build/lib/boltzgen/data/tokenize/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-10-26T21:33:03,037   copying build/lib/boltzgen/data/tokenize/tokenizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-10-26T21:33:03,040   creating build/bdist.linux-armv7l/wheel/boltzgen/data/select
2025-10-26T21:33:03,041   copying build/lib/boltzgen/data/select/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T21:33:03,043   copying build/lib/boltzgen/data/select/selector.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T21:33:03,045   copying build/lib/boltzgen/data/select/protein.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T21:33:03,048   creating build/bdist.linux-armv7l/wheel/boltzgen/data/sample
2025-10-26T21:33:03,049   copying build/lib/boltzgen/data/sample/cluster.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T21:33:03,051   copying build/lib/boltzgen/data/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T21:33:03,053   copying build/lib/boltzgen/data/sample/sampler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T21:33:03,055   creating build/bdist.linux-armv7l/wheel/boltzgen/data/feature
2025-10-26T21:33:03,057   copying build/lib/boltzgen/data/feature/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-10-26T21:33:03,058   copying build/lib/boltzgen/data/feature/featurizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-10-26T21:33:03,062   copying build/lib/boltzgen/data/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T21:33:03,064   copying build/lib/boltzgen/data/const.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T21:33:03,068   creating build/bdist.linux-armv7l/wheel/boltzgen/data/crop
2025-10-26T21:33:03,069   copying build/lib/boltzgen/data/crop/multimer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T21:33:03,071   copying build/lib/boltzgen/data/crop/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T21:33:03,073   copying build/lib/boltzgen/data/crop/cropper.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T21:33:03,075   copying build/lib/boltzgen/data/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T21:33:03,078   copying build/lib/boltzgen/data/mol.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T21:33:03,081   copying build/lib/boltzgen/data/pad.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T21:33:03,083   creating build/bdist.linux-armv7l/wheel/boltzgen/data/write
2025-10-26T21:33:03,084   copying build/lib/boltzgen/data/write/pdb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T21:33:03,087   copying build/lib/boltzgen/data/write/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T21:33:03,089   copying build/lib/boltzgen/data/write/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T21:33:03,091   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter
2025-10-26T21:33:03,093   copying build/lib/boltzgen/data/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter
2025-10-26T21:33:03,095   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/dynamic
2025-10-26T21:33:03,096   copying build/lib/boltzgen/data/filter/dynamic/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,098   copying build/lib/boltzgen/data/filter/dynamic/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,100   copying build/lib/boltzgen/data/filter/dynamic/size.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,101   copying build/lib/boltzgen/data/filter/dynamic/resolution.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,103   copying build/lib/boltzgen/data/filter/dynamic/max_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,105   copying build/lib/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,107   copying build/lib/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,109   copying build/lib/boltzgen/data/filter/dynamic/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,110   copying build/lib/boltzgen/data/filter/dynamic/error.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,112   copying build/lib/boltzgen/data/filter/dynamic/date.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T21:33:03,115   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/static
2025-10-26T21:33:03,116   copying build/lib/boltzgen/data/filter/static/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T21:33:03,118   copying build/lib/boltzgen/data/filter/static/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T21:33:03,119   copying build/lib/boltzgen/data/filter/static/ligand.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T21:33:03,121   copying build/lib/boltzgen/data/filter/static/polymer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T21:33:03,125   creating build/bdist.linux-armv7l/wheel/boltzgen/data/parse
2025-10-26T21:33:03,126   copying build/lib/boltzgen/data/parse/schema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T21:33:03,129   copying build/lib/boltzgen/data/parse/pdb_parser.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T21:33:03,132   copying build/lib/boltzgen/data/parse/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T21:33:03,135   copying build/lib/boltzgen/data/parse/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T21:33:03,136   copying build/lib/boltzgen/data/parse/a3m.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T21:33:03,138   creating build/bdist.linux-armv7l/wheel/boltzgen/data/template
2025-10-26T21:33:03,139   copying build/lib/boltzgen/data/template/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-10-26T21:33:03,141   copying build/lib/boltzgen/data/template/features.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-10-26T21:33:03,143   copying build/lib/boltzgen/data/rmsd_computation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T21:33:03,145   running install_egg_info
2025-10-26T21:33:03,151   Copying src/boltzgen.egg-info to build/bdist.linux-armv7l/wheel/./boltzgen-0.1.1-py3.11.egg-info
2025-10-26T21:33:03,162   running install_scripts
2025-10-26T21:33:03,173   creating build/bdist.linux-armv7l/wheel/boltzgen-0.1.1.dist-info/WHEEL
2025-10-26T21:33:03,176   creating '/tmp/pip-wheel-uqb848dn/.tmp-q60gjnyq/boltzgen-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-26T21:33:03,179   adding 'boltzgen/__init__.py'
2025-10-26T21:33:03,181   adding 'boltzgen/cli/__init__.py'
2025-10-26T21:33:03,187   adding 'boltzgen/cli/boltzgen.py'
2025-10-26T21:33:03,189   adding 'boltzgen/data/__init__.py'
2025-10-26T21:33:03,197   adding 'boltzgen/data/const.py'
2025-10-26T21:33:03,206   adding 'boltzgen/data/data.py'
2025-10-26T21:33:03,210   adding 'boltzgen/data/mol.py'
2025-10-26T21:33:03,212   adding 'boltzgen/data/pad.py'
2025-10-26T21:33:03,213   adding 'boltzgen/data/rmsd_computation.py'
2025-10-26T21:33:03,215   adding 'boltzgen/data/crop/__init__.py'
2025-10-26T21:33:03,216   adding 'boltzgen/data/crop/cropper.py'
2025-10-26T21:33:03,218   adding 'boltzgen/data/crop/multimer.py'
2025-10-26T21:33:03,220   adding 'boltzgen/data/feature/__init__.py'
2025-10-26T21:33:03,230   adding 'boltzgen/data/feature/featurizer.py'
2025-10-26T21:33:03,232   adding 'boltzgen/data/filter/__init__.py'
2025-10-26T21:33:03,233   adding 'boltzgen/data/filter/dynamic/__init__.py'
2025-10-26T21:33:03,234   adding 'boltzgen/data/filter/dynamic/confidence.py'
2025-10-26T21:33:03,236   adding 'boltzgen/data/filter/dynamic/date.py'
2025-10-26T21:33:03,237   adding 'boltzgen/data/filter/dynamic/error.py'
2025-10-26T21:33:03,238   adding 'boltzgen/data/filter/dynamic/filter.py'
2025-10-26T21:33:03,239   adding 'boltzgen/data/filter/dynamic/max_residues.py'
2025-10-26T21:33:03,241   adding 'boltzgen/data/filter/dynamic/min_protein_residues.py'
2025-10-26T21:33:03,242   adding 'boltzgen/data/filter/dynamic/pdb_id_txtfile.py'
2025-10-26T21:33:03,243   adding 'boltzgen/data/filter/dynamic/resolution.py'
2025-10-26T21:33:03,245   adding 'boltzgen/data/filter/dynamic/size.py'
2025-10-26T21:33:03,246   adding 'boltzgen/data/filter/static/__init__.py'
2025-10-26T21:33:03,247   adding 'boltzgen/data/filter/static/filter.py'
2025-10-26T21:33:03,249   adding 'boltzgen/data/filter/static/ligand.py'
2025-10-26T21:33:03,250   adding 'boltzgen/data/filter/static/polymer.py'
2025-10-26T21:33:03,252   adding 'boltzgen/data/parse/__init__.py'
2025-10-26T21:33:03,253   adding 'boltzgen/data/parse/a3m.py'
2025-10-26T21:33:03,259   adding 'boltzgen/data/parse/mmcif.py'
2025-10-26T21:33:03,261   adding 'boltzgen/data/parse/pdb_parser.py'
2025-10-26T21:33:03,269   adding 'boltzgen/data/parse/schema.py'
2025-10-26T21:33:03,271   adding 'boltzgen/data/sample/__init__.py'
2025-10-26T21:33:03,273   adding 'boltzgen/data/sample/cluster.py'
2025-10-26T21:33:03,274   adding 'boltzgen/data/sample/sampler.py'
2025-10-26T21:33:03,275   adding 'boltzgen/data/select/__init__.py'
2025-10-26T21:33:03,278   adding 'boltzgen/data/select/protein.py'
2025-10-26T21:33:03,280   adding 'boltzgen/data/select/selector.py'
2025-10-26T21:33:03,281   adding 'boltzgen/data/template/__init__.py'
2025-10-26T21:33:03,282   adding 'boltzgen/data/template/features.py'
2025-10-26T21:33:03,284   adding 'boltzgen/data/tokenize/__init__.py'
2025-10-26T21:33:03,286   adding 'boltzgen/data/tokenize/tokenizer.py'
2025-10-26T21:33:03,287   adding 'boltzgen/data/write/__init__.py'
2025-10-26T21:33:03,289   adding 'boltzgen/data/write/mmcif.py'
2025-10-26T21:33:03,291   adding 'boltzgen/data/write/pdb.py'
2025-10-26T21:33:03,292   adding 'boltzgen/model/__init__.py'
2025-10-26T21:33:03,294   adding 'boltzgen/model/layers/__init__.py'
2025-10-26T21:33:03,295   adding 'boltzgen/model/layers/attention.py'
2025-10-26T21:33:03,297   adding 'boltzgen/model/layers/confidence_utils.py'
2025-10-26T21:33:03,299   adding 'boltzgen/model/layers/dropout.py'
2025-10-26T21:33:03,300   adding 'boltzgen/model/layers/initialize.py'
2025-10-26T21:33:03,301   adding 'boltzgen/model/layers/miniformer.py'
2025-10-26T21:33:03,303   adding 'boltzgen/model/layers/outer_product_mean.py'
2025-10-26T21:33:03,304   adding 'boltzgen/model/layers/pair_averaging.py'
2025-10-26T21:33:03,305   adding 'boltzgen/model/layers/pairformer.py'
2025-10-26T21:33:03,307   adding 'boltzgen/model/layers/relative.py'
2025-10-26T21:33:03,308   adding 'boltzgen/model/layers/transition.py'
2025-10-26T21:33:03,309   adding 'boltzgen/model/layers/triangular.py'
2025-10-26T21:33:03,311   adding 'boltzgen/model/layers/triangular_attention/__init__.py'
2025-10-26T21:33:03,312   adding 'boltzgen/model/layers/triangular_attention/attention.py'
2025-10-26T21:33:03,314   adding 'boltzgen/model/layers/triangular_attention/primitives.py'
2025-10-26T21:33:03,317   adding 'boltzgen/model/layers/triangular_attention/utils.py'
2025-10-26T21:33:03,318   adding 'boltzgen/model/loss/__init__.py'
2025-10-26T21:33:03,320   adding 'boltzgen/model/loss/bfactor.py'
2025-10-26T21:33:03,322   adding 'boltzgen/model/loss/confidence.py'
2025-10-26T21:33:03,323   adding 'boltzgen/model/loss/diffusion.py'
2025-10-26T21:33:03,325   adding 'boltzgen/model/loss/distogram.py'
2025-10-26T21:33:03,326   adding 'boltzgen/model/loss/res_type.py'
2025-10-26T21:33:03,331   adding 'boltzgen/model/loss/validation.py'
2025-10-26T21:33:03,333   adding 'boltzgen/model/models/__init__.py'
2025-10-26T21:33:03,339   adding 'boltzgen/model/models/boltz.py'
2025-10-26T21:33:03,341   adding 'boltzgen/model/modules/__init__.py'
2025-10-26T21:33:03,343   adding 'boltzgen/model/modules/affinity.py'
2025-10-26T21:33:03,345   adding 'boltzgen/model/modules/confidence.py'
2025-10-26T21:33:03,349   adding 'boltzgen/model/modules/diffusion.py'
2025-10-26T21:33:03,350   adding 'boltzgen/model/modules/diffusion_conditioning.py'
2025-10-26T21:33:03,353   adding 'boltzgen/model/modules/encoders.py'
2025-10-26T21:33:03,356   adding 'boltzgen/model/modules/inverse_fold.py'
2025-10-26T21:33:03,358   adding 'boltzgen/model/modules/masker.py'
2025-10-26T21:33:03,359   adding 'boltzgen/model/modules/scatter_utils.py'
2025-10-26T21:33:03,361   adding 'boltzgen/model/modules/transformers.py'
2025-10-26T21:33:03,363   adding 'boltzgen/model/modules/trunk.py'
2025-10-26T21:33:03,365   adding 'boltzgen/model/modules/utils.py'
2025-10-26T21:33:03,367   adding 'boltzgen/model/optim/__init__.py'
2025-10-26T21:33:03,369   adding 'boltzgen/model/optim/ema.py'
2025-10-26T21:33:03,370   adding 'boltzgen/model/optim/scheduler.py'
2025-10-26T21:33:03,373   adding 'boltzgen/model/validation/design.py'
2025-10-26T21:33:03,374   adding 'boltzgen/model/validation/rcsb.py'
2025-10-26T21:33:03,376   adding 'boltzgen/model/validation/refolding.py'
2025-10-26T21:33:03,379   adding 'boltzgen/model/validation/validator.py'
2025-10-26T21:33:03,380   adding 'boltzgen/task/__init__.py'
2025-10-26T21:33:03,382   adding 'boltzgen/task/task.py'
2025-10-26T21:33:03,388   adding 'boltzgen/task/analyze/analyze.py'
2025-10-26T21:33:03,393   adding 'boltzgen/task/analyze/analyze_utils.py'
2025-10-26T21:33:03,395   adding 'boltzgen/task/filter/__init__.py'
2025-10-26T21:33:03,400   adding 'boltzgen/task/filter/filter.py'
2025-10-26T21:33:03,403   adding 'boltzgen/task/filter/seqplot_utils.py'
2025-10-26T21:33:03,404   adding 'boltzgen/task/predict/__init__.py'
2025-10-26T21:33:03,408   adding 'boltzgen/task/predict/data_from_generated.py'
2025-10-26T21:33:03,410   adding 'boltzgen/task/predict/data_from_yaml.py'
2025-10-26T21:33:03,411   adding 'boltzgen/task/predict/loading_utils.py'
2025-10-26T21:33:03,413   adding 'boltzgen/task/predict/predict.py'
2025-10-26T21:33:03,415   adding 'boltzgen/task/predict/writer.py'
2025-10-26T21:33:03,417   adding 'boltzgen/task/train/__init__.py'
2025-10-26T21:33:03,421   adding 'boltzgen/task/train/data.py'
2025-10-26T21:33:03,423   adding 'boltzgen/task/train/train.py'
2025-10-26T21:33:03,425   adding 'boltzgen/utils/__init__.py'
2025-10-26T21:33:03,427   adding 'boltzgen/utils/pipeline_progress_bar.py'
2025-10-26T21:33:03,428   adding 'boltzgen/utils/quiet.py'
2025-10-26T21:33:03,430   adding 'boltzgen-0.1.1.dist-info/licenses/LICENSE'
2025-10-26T21:33:03,431   adding 'boltzgen-0.1.1.dist-info/METADATA'
2025-10-26T21:33:03,432   adding 'boltzgen-0.1.1.dist-info/WHEEL'
2025-10-26T21:33:03,433   adding 'boltzgen-0.1.1.dist-info/entry_points.txt'
2025-10-26T21:33:03,434   adding 'boltzgen-0.1.1.dist-info/top_level.txt'
2025-10-26T21:33:03,436   adding 'boltzgen-0.1.1.dist-info/RECORD'
2025-10-26T21:33:03,442   removing build/bdist.linux-armv7l/wheel
2025-10-26T21:33:03,576   Building wheel for boltzgen (pyproject.toml): finished with status 'done'
2025-10-26T21:33:03,588   Created wheel for boltzgen: filename=boltzgen-0.1.1-py3-none-any.whl size=315380 sha256=ba441ae54add47197ca07443c4bb7468bb6e30ae1e94224c21360afb80fd6215
2025-10-26T21:33:03,589   Stored in directory: /tmp/pip-ephem-wheel-cache-v0ms4l_e/wheels/1d/4e/92/d6bb0fbdcaaefab4f6dd3a57c06fb3a846edb709208309aa9e
2025-10-26T21:33:03,603 Successfully built boltzgen
2025-10-26T21:33:03,614 Removed build tracker: '/tmp/pip-build-tracker-fa3eljav'