2025-10-26T22:29:44,947 Created temporary directory: /tmp/pip-ephem-wheel-cache-tsmg_r3m
2025-10-26T22:29:44,949 Created temporary directory: /tmp/pip-build-tracker-o1yq7m8f
2025-10-26T22:29:44,950 Initialized build tracking at /tmp/pip-build-tracker-o1yq7m8f
2025-10-26T22:29:44,951 Created build tracker: /tmp/pip-build-tracker-o1yq7m8f
2025-10-26T22:29:44,951 Entered build tracker: /tmp/pip-build-tracker-o1yq7m8f
2025-10-26T22:29:44,952 Created temporary directory: /tmp/pip-wheel-7b5ytwws
2025-10-26T22:29:44,955 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-26T22:29:44,957 Created temporary directory: /tmp/pip-ephem-wheel-cache-bk2n38qz
2025-10-26T22:29:44,980 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-26T22:29:44,984 2 location(s) to search for versions of boltzgen:
2025-10-26T22:29:44,984 * https://pypi.org/simple/boltzgen/
2025-10-26T22:29:44,984 * https://www.piwheels.org/simple/boltzgen/
2025-10-26T22:29:44,985 Fetching project page and analyzing links: https://pypi.org/simple/boltzgen/
2025-10-26T22:29:44,985 Getting page https://pypi.org/simple/boltzgen/
2025-10-26T22:29:44,987 Found index url https://pypi.org/simple
2025-10-26T22:29:45,200 Fetched page https://pypi.org/simple/boltzgen/ as application/vnd.pypi.simple.v1+json
2025-10-26T22:29:45,202   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/63/90/abce182b30c62f13029523927c04820cfa69e03635c4ab7f2ca01aa64fc8/boltzgen-0.1.0-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T22:29:45,203   Found link https://files.pythonhosted.org/packages/19/6d/3259f594bdc5688261f220b0280facea3a2e497e34609c1d358c40ff26df/boltzgen-0.1.0.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.0
2025-10-26T22:29:45,204   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/b9/e1/bea73eb825594a48e824a59ea2484c0748020a9713c5b2503d7cfe033c2b/boltzgen-0.1.1-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T22:29:45,205   Found link https://files.pythonhosted.org/packages/78/94/91e0892caf7d08ad1ee432f2d64d07f0bb4cc5fa53a010b2995db7a90dbf/boltzgen-0.1.1.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.1
2025-10-26T22:29:45,205   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/74/06/6834e94921b9a5c978a3b6014e20db1dc528e5b67d0dcad0f8f47836908c/boltzgen-0.1.2-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T22:29:45,206   Found link https://files.pythonhosted.org/packages/20/02/6579821c7da06745452f2ecb95605dce1b8de1658d1dd4be5c6c3b970208/boltzgen-0.1.2.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.2
2025-10-26T22:29:45,207 Fetching project page and analyzing links: https://www.piwheels.org/simple/boltzgen/
2025-10-26T22:29:45,208 Getting page https://www.piwheels.org/simple/boltzgen/
2025-10-26T22:29:45,209 Found index url https://www.piwheels.org/simple
2025-10-26T22:29:45,549 Fetched page https://www.piwheels.org/simple/boltzgen/ as text/html
2025-10-26T22:29:45,553   Skipping link: No binaries permitted for boltzgen: https://www.piwheels.org/simple/boltzgen/boltzgen-0.1.1-py3-none-any.whl#sha256=ba441ae54add47197ca07443c4bb7468bb6e30ae1e94224c21360afb80fd6215 (from https://www.piwheels.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T22:29:45,554   Skipping link: No binaries permitted for boltzgen: https://www.piwheels.org/simple/boltzgen/boltzgen-0.1.0-py3-none-any.whl#sha256=4c742030a0a07bb98c68ee543aad9b9d01c4a673e62ba78cab124ed43a91b644 (from https://www.piwheels.org/simple/boltzgen/) (requires-python:>=3.9)
2025-10-26T22:29:45,555 Skipping link: not a file: https://www.piwheels.org/simple/boltzgen/
2025-10-26T22:29:45,557 Skipping link: not a file: https://pypi.org/simple/boltzgen/
2025-10-26T22:29:45,603 Given no hashes to check 1 links for project 'boltzgen': discarding no candidates
2025-10-26T22:29:45,643 Collecting boltzgen==0.1.2
2025-10-26T22:29:45,645   Created temporary directory: /tmp/pip-unpack-wco9gled
2025-10-26T22:29:45,775   Downloading boltzgen-0.1.2.tar.gz (293 kB)
2025-10-26T22:29:46,198   Added boltzgen==0.1.2 from https://files.pythonhosted.org/packages/20/02/6579821c7da06745452f2ecb95605dce1b8de1658d1dd4be5c6c3b970208/boltzgen-0.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-o1yq7m8f'
2025-10-26T22:29:46,203   Created temporary directory: /tmp/pip-build-env-_sz62q1t
2025-10-26T22:29:46,208   Installing build dependencies: started
2025-10-26T22:29:46,209   Running command pip subprocess to install build dependencies
2025-10-26T22:29:47,343   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-26T22:29:47,919   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-26T22:29:47,942   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-26T22:29:49,660   Collecting setuptools>=61
2025-10-26T22:29:49,749     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-26T22:29:52,663   Installing collected packages: setuptools
2025-10-26T22:29:56,894   Successfully installed setuptools-80.9.0
2025-10-26T22:29:57,168   Installing build dependencies: finished with status 'done'
2025-10-26T22:29:57,175   Getting requirements to build wheel: started
2025-10-26T22:29:57,176   Running command Getting requirements to build wheel
2025-10-26T22:29:57,902   running egg_info
2025-10-26T22:29:57,908   writing src/boltzgen.egg-info/PKG-INFO
2025-10-26T22:29:57,915   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-10-26T22:29:57,917   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-10-26T22:29:57,921   writing requirements to src/boltzgen.egg-info/requires.txt
2025-10-26T22:29:57,923   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-10-26T22:29:57,981   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T22:29:57,990   adding license file 'LICENSE'
2025-10-26T22:29:57,998   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T22:29:58,096   Getting requirements to build wheel: finished with status 'done'
2025-10-26T22:29:58,100   Created temporary directory: /tmp/pip-modern-metadata-qix9gv6h
2025-10-26T22:29:58,102   Preparing metadata (pyproject.toml): started
2025-10-26T22:29:58,104   Running command Preparing metadata (pyproject.toml)
2025-10-26T22:29:59,473   running dist_info
2025-10-26T22:29:59,485   creating /tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info
2025-10-26T22:29:59,486   writing /tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/PKG-INFO
2025-10-26T22:29:59,493   writing dependency_links to /tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/dependency_links.txt
2025-10-26T22:29:59,495   writing entry points to /tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/entry_points.txt
2025-10-26T22:29:59,499   writing requirements to /tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/requires.txt
2025-10-26T22:29:59,500   writing top-level names to /tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/top_level.txt
2025-10-26T22:29:59,502   writing manifest file '/tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/SOURCES.txt'
2025-10-26T22:29:59,553   reading manifest file '/tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/SOURCES.txt'
2025-10-26T22:29:59,556   adding license file 'LICENSE'
2025-10-26T22:29:59,562   writing manifest file '/tmp/pip-modern-metadata-qix9gv6h/boltzgen.egg-info/SOURCES.txt'
2025-10-26T22:29:59,564   creating '/tmp/pip-modern-metadata-qix9gv6h/boltzgen-0.1.2.dist-info'
2025-10-26T22:29:59,692   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-26T22:29:59,696   Source in /tmp/pip-wheel-7b5ytwws/boltzgen_aa038cf7cd7f465b9b8754dc30fd9f56 has version 0.1.2, which satisfies requirement boltzgen==0.1.2 from https://files.pythonhosted.org/packages/20/02/6579821c7da06745452f2ecb95605dce1b8de1658d1dd4be5c6c3b970208/boltzgen-0.1.2.tar.gz
2025-10-26T22:29:59,698   Removed boltzgen==0.1.2 from https://files.pythonhosted.org/packages/20/02/6579821c7da06745452f2ecb95605dce1b8de1658d1dd4be5c6c3b970208/boltzgen-0.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-o1yq7m8f'
2025-10-26T22:29:59,703 Created temporary directory: /tmp/pip-unpack-eoyf5ky6
2025-10-26T22:29:59,704 Building wheels for collected packages: boltzgen
2025-10-26T22:29:59,708   Created temporary directory: /tmp/pip-wheel-q0kfx8c8
2025-10-26T22:29:59,709   Destination directory: /tmp/pip-wheel-q0kfx8c8
2025-10-26T22:29:59,711   Building wheel for boltzgen (pyproject.toml): started
2025-10-26T22:29:59,712   Running command Building wheel for boltzgen (pyproject.toml)
2025-10-26T22:30:00,353   running bdist_wheel
2025-10-26T22:30:00,373   running build
2025-10-26T22:30:00,374   running build_py
2025-10-26T22:30:00,381   creating build/lib/boltzgen
2025-10-26T22:30:00,383   copying src/boltzgen/__init__.py -> build/lib/boltzgen
2025-10-26T22:30:00,385   creating build/lib/boltzgen/data
2025-10-26T22:30:00,386   copying src/boltzgen/data/data.py -> build/lib/boltzgen/data
2025-10-26T22:30:00,391   copying src/boltzgen/data/__init__.py -> build/lib/boltzgen/data
2025-10-26T22:30:00,393   copying src/boltzgen/data/rmsd_computation.py -> build/lib/boltzgen/data
2025-10-26T22:30:00,395   copying src/boltzgen/data/mol.py -> build/lib/boltzgen/data
2025-10-26T22:30:00,398   copying src/boltzgen/data/const.py -> build/lib/boltzgen/data
2025-10-26T22:30:00,403   copying src/boltzgen/data/pad.py -> build/lib/boltzgen/data
2025-10-26T22:30:00,405   creating build/lib/boltzgen/model
2025-10-26T22:30:00,406   copying src/boltzgen/model/__init__.py -> build/lib/boltzgen/model
2025-10-26T22:30:00,409   creating build/lib/boltzgen/utils
2025-10-26T22:30:00,410   copying src/boltzgen/utils/__init__.py -> build/lib/boltzgen/utils
2025-10-26T22:30:00,411   copying src/boltzgen/utils/quiet.py -> build/lib/boltzgen/utils
2025-10-26T22:30:00,413   copying src/boltzgen/utils/pipeline_progress_bar.py -> build/lib/boltzgen/utils
2025-10-26T22:30:00,416   creating build/lib/boltzgen/task
2025-10-26T22:30:00,417   copying src/boltzgen/task/__init__.py -> build/lib/boltzgen/task
2025-10-26T22:30:00,419   copying src/boltzgen/task/task.py -> build/lib/boltzgen/task
2025-10-26T22:30:00,421   creating build/lib/boltzgen/cli
2025-10-26T22:30:00,422   copying src/boltzgen/cli/__init__.py -> build/lib/boltzgen/cli
2025-10-26T22:30:00,424   copying src/boltzgen/cli/boltzgen.py -> build/lib/boltzgen/cli
2025-10-26T22:30:00,428   creating build/lib/boltzgen/resources
2025-10-26T22:30:00,429   copying src/boltzgen/resources/main.py -> build/lib/boltzgen/resources
2025-10-26T22:30:00,432   creating build/lib/boltzgen/data/template
2025-10-26T22:30:00,433   copying src/boltzgen/data/template/features.py -> build/lib/boltzgen/data/template
2025-10-26T22:30:00,435   copying src/boltzgen/data/template/__init__.py -> build/lib/boltzgen/data/template
2025-10-26T22:30:00,437   creating build/lib/boltzgen/data/select
2025-10-26T22:30:00,438   copying src/boltzgen/data/select/__init__.py -> build/lib/boltzgen/data/select
2025-10-26T22:30:00,440   copying src/boltzgen/data/select/selector.py -> build/lib/boltzgen/data/select
2025-10-26T22:30:00,442   copying src/boltzgen/data/select/protein.py -> build/lib/boltzgen/data/select
2025-10-26T22:30:00,446   creating build/lib/boltzgen/data/tokenize
2025-10-26T22:30:00,447   copying src/boltzgen/data/tokenize/tokenizer.py -> build/lib/boltzgen/data/tokenize
2025-10-26T22:30:00,449   copying src/boltzgen/data/tokenize/__init__.py -> build/lib/boltzgen/data/tokenize
2025-10-26T22:30:00,451   creating build/lib/boltzgen/data/parse
2025-10-26T22:30:00,452   copying src/boltzgen/data/parse/pdb_parser.py -> build/lib/boltzgen/data/parse
2025-10-26T22:30:00,455   copying src/boltzgen/data/parse/schema.py -> build/lib/boltzgen/data/parse
2025-10-26T22:30:00,458   copying src/boltzgen/data/parse/a3m.py -> build/lib/boltzgen/data/parse
2025-10-26T22:30:00,460   copying src/boltzgen/data/parse/__init__.py -> build/lib/boltzgen/data/parse
2025-10-26T22:30:00,462   copying src/boltzgen/data/parse/mmcif.py -> build/lib/boltzgen/data/parse
2025-10-26T22:30:00,465   creating build/lib/boltzgen/data/crop
2025-10-26T22:30:00,466   copying src/boltzgen/data/crop/__init__.py -> build/lib/boltzgen/data/crop
2025-10-26T22:30:00,468   copying src/boltzgen/data/crop/cropper.py -> build/lib/boltzgen/data/crop
2025-10-26T22:30:00,470   copying src/boltzgen/data/crop/multimer.py -> build/lib/boltzgen/data/crop
2025-10-26T22:30:00,473   creating build/lib/boltzgen/data/feature
2025-10-26T22:30:00,474   copying src/boltzgen/data/feature/__init__.py -> build/lib/boltzgen/data/feature
2025-10-26T22:30:00,476   copying src/boltzgen/data/feature/featurizer.py -> build/lib/boltzgen/data/feature
2025-10-26T22:30:00,479   creating build/lib/boltzgen/data/filter
2025-10-26T22:30:00,480   copying src/boltzgen/data/filter/__init__.py -> build/lib/boltzgen/data/filter
2025-10-26T22:30:00,483   creating build/lib/boltzgen/data/sample
2025-10-26T22:30:00,484   copying src/boltzgen/data/sample/sampler.py -> build/lib/boltzgen/data/sample
2025-10-26T22:30:00,486   copying src/boltzgen/data/sample/cluster.py -> build/lib/boltzgen/data/sample
2025-10-26T22:30:00,488   copying src/boltzgen/data/sample/__init__.py -> build/lib/boltzgen/data/sample
2025-10-26T22:30:00,490   creating build/lib/boltzgen/data/write
2025-10-26T22:30:00,492   copying src/boltzgen/data/write/pdb.py -> build/lib/boltzgen/data/write
2025-10-26T22:30:00,494   copying src/boltzgen/data/write/__init__.py -> build/lib/boltzgen/data/write
2025-10-26T22:30:00,496   copying src/boltzgen/data/write/mmcif.py -> build/lib/boltzgen/data/write
2025-10-26T22:30:00,499   creating build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,500   copying src/boltzgen/data/filter/dynamic/resolution.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,502   copying src/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,504   copying src/boltzgen/data/filter/dynamic/confidence.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,506   copying src/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,508   copying src/boltzgen/data/filter/dynamic/date.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,510   copying src/boltzgen/data/filter/dynamic/size.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,512   copying src/boltzgen/data/filter/dynamic/filter.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,514   copying src/boltzgen/data/filter/dynamic/__init__.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,515   copying src/boltzgen/data/filter/dynamic/error.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,518   copying src/boltzgen/data/filter/dynamic/max_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,520   creating build/lib/boltzgen/data/filter/static
2025-10-26T22:30:00,521   copying src/boltzgen/data/filter/static/ligand.py -> build/lib/boltzgen/data/filter/static
2025-10-26T22:30:00,523   copying src/boltzgen/data/filter/static/filter.py -> build/lib/boltzgen/data/filter/static
2025-10-26T22:30:00,525   copying src/boltzgen/data/filter/static/__init__.py -> build/lib/boltzgen/data/filter/static
2025-10-26T22:30:00,527   copying src/boltzgen/data/filter/static/polymer.py -> build/lib/boltzgen/data/filter/static
2025-10-26T22:30:00,530   creating build/lib/boltzgen/model/layers
2025-10-26T22:30:00,531   copying src/boltzgen/model/layers/pair_averaging.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,533   copying src/boltzgen/model/layers/initialize.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,535   copying src/boltzgen/model/layers/outer_product_mean.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,537   copying src/boltzgen/model/layers/transition.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,539   copying src/boltzgen/model/layers/triangular.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,541   copying src/boltzgen/model/layers/relative.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,543   copying src/boltzgen/model/layers/pairformer.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,546   copying src/boltzgen/model/layers/__init__.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,547   copying src/boltzgen/model/layers/miniformer.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,549   copying src/boltzgen/model/layers/attention.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,551   copying src/boltzgen/model/layers/dropout.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,553   copying src/boltzgen/model/layers/confidence_utils.py -> build/lib/boltzgen/model/layers
2025-10-26T22:30:00,557   creating build/lib/boltzgen/model/modules
2025-10-26T22:30:00,557   copying src/boltzgen/model/modules/transformers.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,560   copying src/boltzgen/model/modules/affinity.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,562   copying src/boltzgen/model/modules/confidence.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,565   copying src/boltzgen/model/modules/inverse_fold.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,568   copying src/boltzgen/model/modules/utils.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,571   copying src/boltzgen/model/modules/__init__.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,572   copying src/boltzgen/model/modules/diffusion_conditioning.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,575   copying src/boltzgen/model/modules/scatter_utils.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,577   copying src/boltzgen/model/modules/encoders.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,580   copying src/boltzgen/model/modules/trunk.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,583   copying src/boltzgen/model/modules/masker.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,586   copying src/boltzgen/model/modules/diffusion.py -> build/lib/boltzgen/model/modules
2025-10-26T22:30:00,590   creating build/lib/boltzgen/model/loss
2025-10-26T22:30:00,591   copying src/boltzgen/model/loss/distogram.py -> build/lib/boltzgen/model/loss
2025-10-26T22:30:00,594   copying src/boltzgen/model/loss/bfactor.py -> build/lib/boltzgen/model/loss
2025-10-26T22:30:00,596   copying src/boltzgen/model/loss/validation.py -> build/lib/boltzgen/model/loss
2025-10-26T22:30:00,600   copying src/boltzgen/model/loss/confidence.py -> build/lib/boltzgen/model/loss
2025-10-26T22:30:00,603   copying src/boltzgen/model/loss/__init__.py -> build/lib/boltzgen/model/loss
2025-10-26T22:30:00,605   copying src/boltzgen/model/loss/res_type.py -> build/lib/boltzgen/model/loss
2025-10-26T22:30:00,607   copying src/boltzgen/model/loss/diffusion.py -> build/lib/boltzgen/model/loss
2025-10-26T22:30:00,610   creating build/lib/boltzgen/model/optim
2025-10-26T22:30:00,612   copying src/boltzgen/model/optim/__init__.py -> build/lib/boltzgen/model/optim
2025-10-26T22:30:00,614   copying src/boltzgen/model/optim/scheduler.py -> build/lib/boltzgen/model/optim
2025-10-26T22:30:00,616   copying src/boltzgen/model/optim/ema.py -> build/lib/boltzgen/model/optim
2025-10-26T22:30:00,619   creating build/lib/boltzgen/model/models
2025-10-26T22:30:00,620   copying src/boltzgen/model/models/__init__.py -> build/lib/boltzgen/model/models
2025-10-26T22:30:00,622   copying src/boltzgen/model/models/boltz.py -> build/lib/boltzgen/model/models
2025-10-26T22:30:00,626   creating build/lib/boltzgen/model/validation
2025-10-26T22:30:00,627   copying src/boltzgen/model/validation/refolding.py -> build/lib/boltzgen/model/validation
2025-10-26T22:30:00,630   copying src/boltzgen/model/validation/validator.py -> build/lib/boltzgen/model/validation
2025-10-26T22:30:00,633   copying src/boltzgen/model/validation/design.py -> build/lib/boltzgen/model/validation
2025-10-26T22:30:00,635   copying src/boltzgen/model/validation/rcsb.py -> build/lib/boltzgen/model/validation
2025-10-26T22:30:00,638   creating build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T22:30:00,639   copying src/boltzgen/model/layers/triangular_attention/utils.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T22:30:00,642   copying src/boltzgen/model/layers/triangular_attention/__init__.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T22:30:00,644   copying src/boltzgen/model/layers/triangular_attention/primitives.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T22:30:00,646   copying src/boltzgen/model/layers/triangular_attention/attention.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-10-26T22:30:00,649   creating build/lib/boltzgen/task/analyze
2025-10-26T22:30:00,651   copying src/boltzgen/task/analyze/analyze_utils.py -> build/lib/boltzgen/task/analyze
2025-10-26T22:30:00,654   copying src/boltzgen/task/analyze/analyze.py -> build/lib/boltzgen/task/analyze
2025-10-26T22:30:00,658   creating build/lib/boltzgen/task/train
2025-10-26T22:30:00,659   copying src/boltzgen/task/train/train.py -> build/lib/boltzgen/task/train
2025-10-26T22:30:00,662   copying src/boltzgen/task/train/data.py -> build/lib/boltzgen/task/train
2025-10-26T22:30:00,665   copying src/boltzgen/task/train/__init__.py -> build/lib/boltzgen/task/train
2025-10-26T22:30:00,668   creating build/lib/boltzgen/task/predict
2025-10-26T22:30:00,669   copying src/boltzgen/task/predict/loading_utils.py -> build/lib/boltzgen/task/predict
2025-10-26T22:30:00,671   copying src/boltzgen/task/predict/writer.py -> build/lib/boltzgen/task/predict
2025-10-26T22:30:00,674   copying src/boltzgen/task/predict/__init__.py -> build/lib/boltzgen/task/predict
2025-10-26T22:30:00,676   copying src/boltzgen/task/predict/data_from_yaml.py -> build/lib/boltzgen/task/predict
2025-10-26T22:30:00,679   copying src/boltzgen/task/predict/predict.py -> build/lib/boltzgen/task/predict
2025-10-26T22:30:00,682   copying src/boltzgen/task/predict/data_from_generated.py -> build/lib/boltzgen/task/predict
2025-10-26T22:30:00,685   creating build/lib/boltzgen/task/filter
2025-10-26T22:30:00,687   copying src/boltzgen/task/filter/seqplot_utils.py -> build/lib/boltzgen/task/filter
2025-10-26T22:30:00,690   copying src/boltzgen/task/filter/filter.py -> build/lib/boltzgen/task/filter
2025-10-26T22:30:00,693   copying src/boltzgen/task/filter/__init__.py -> build/lib/boltzgen/task/filter
2025-10-26T22:30:00,696   running egg_info
2025-10-26T22:30:00,708   writing src/boltzgen.egg-info/PKG-INFO
2025-10-26T22:30:00,715   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-10-26T22:30:00,717   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-10-26T22:30:00,721   writing requirements to src/boltzgen.egg-info/requires.txt
2025-10-26T22:30:00,723   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-10-26T22:30:00,761   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T22:30:00,769   adding license file 'LICENSE'
2025-10-26T22:30:00,777   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-10-26T22:30:00,796   creating build/lib/boltzgen/resources/config
2025-10-26T22:30:00,798   copying src/boltzgen/resources/config/design.yaml -> build/lib/boltzgen/resources/config
2025-10-26T22:30:00,801   copying src/boltzgen/resources/config/inverse_fold.yaml -> build/lib/boltzgen/resources/config
2025-10-26T22:30:00,803   copying src/boltzgen/resources/config/affinity.yaml -> build/lib/boltzgen/resources/config
2025-10-26T22:30:00,806   copying src/boltzgen/resources/config/filtering.yaml -> build/lib/boltzgen/resources/config
2025-10-26T22:30:00,808   copying src/boltzgen/resources/config/fold.yaml -> build/lib/boltzgen/resources/config
2025-10-26T22:30:00,811   copying src/boltzgen/resources/config/analysis.yaml -> build/lib/boltzgen/resources/config
2025-10-26T22:30:00,813   copying src/boltzgen/resources/config/inverse_fold_only.yaml -> build/lib/boltzgen/resources/config
2025-10-26T22:30:00,816   creating build/lib/boltzgen/resources/config/train
2025-10-26T22:30:00,817   copying src/boltzgen/resources/config/train/boltzgen_small.yaml -> build/lib/boltzgen/resources/config/train
2025-10-26T22:30:00,820   copying src/boltzgen/resources/config/train/inverse_folding.yaml -> build/lib/boltzgen/resources/config/train
2025-10-26T22:30:00,823   copying src/boltzgen/resources/config/train/boltzgen.yaml -> build/lib/boltzgen/resources/config/train
2025-10-26T22:30:00,854   installing to build/bdist.linux-armv7l/wheel
2025-10-26T22:30:00,854   running install
2025-10-26T22:30:00,878   running install_lib
2025-10-26T22:30:00,885   creating build/bdist.linux-armv7l/wheel
2025-10-26T22:30:00,887   creating build/bdist.linux-armv7l/wheel/boltzgen
2025-10-26T22:30:00,889   creating build/bdist.linux-armv7l/wheel/boltzgen/data
2025-10-26T22:30:00,891   creating build/bdist.linux-armv7l/wheel/boltzgen/data/template
2025-10-26T22:30:00,893   copying build/lib/boltzgen/data/template/features.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-10-26T22:30:00,895   copying build/lib/boltzgen/data/template/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-10-26T22:30:00,897   creating build/bdist.linux-armv7l/wheel/boltzgen/data/select
2025-10-26T22:30:00,899   copying build/lib/boltzgen/data/select/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T22:30:00,901   copying build/lib/boltzgen/data/select/selector.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T22:30:00,903   copying build/lib/boltzgen/data/select/protein.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-10-26T22:30:00,906   copying build/lib/boltzgen/data/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T22:30:00,910   creating build/bdist.linux-armv7l/wheel/boltzgen/data/tokenize
2025-10-26T22:30:00,912   copying build/lib/boltzgen/data/tokenize/tokenizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-10-26T22:30:00,915   copying build/lib/boltzgen/data/tokenize/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-10-26T22:30:00,917   creating build/bdist.linux-armv7l/wheel/boltzgen/data/parse
2025-10-26T22:30:00,919   copying build/lib/boltzgen/data/parse/pdb_parser.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T22:30:00,921   copying build/lib/boltzgen/data/parse/schema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T22:30:00,926   copying build/lib/boltzgen/data/parse/a3m.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T22:30:00,928   copying build/lib/boltzgen/data/parse/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T22:30:00,930   copying build/lib/boltzgen/data/parse/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-10-26T22:30:00,934   creating build/bdist.linux-armv7l/wheel/boltzgen/data/crop
2025-10-26T22:30:00,935   copying build/lib/boltzgen/data/crop/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T22:30:00,936   copying build/lib/boltzgen/data/crop/cropper.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T22:30:00,938   copying build/lib/boltzgen/data/crop/multimer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-10-26T22:30:00,941   creating build/bdist.linux-armv7l/wheel/boltzgen/data/feature
2025-10-26T22:30:00,942   copying build/lib/boltzgen/data/feature/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-10-26T22:30:00,944   copying build/lib/boltzgen/data/feature/featurizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-10-26T22:30:00,947   copying build/lib/boltzgen/data/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T22:30:00,949   copying build/lib/boltzgen/data/rmsd_computation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T22:30:00,951   copying build/lib/boltzgen/data/mol.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T22:30:00,954   copying build/lib/boltzgen/data/const.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T22:30:00,958   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter
2025-10-26T22:30:00,959   copying build/lib/boltzgen/data/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter
2025-10-26T22:30:00,961   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/dynamic
2025-10-26T22:30:00,962   copying build/lib/boltzgen/data/filter/dynamic/resolution.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,964   copying build/lib/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,966   copying build/lib/boltzgen/data/filter/dynamic/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,968   copying build/lib/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,970   copying build/lib/boltzgen/data/filter/dynamic/date.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,972   copying build/lib/boltzgen/data/filter/dynamic/size.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,974   copying build/lib/boltzgen/data/filter/dynamic/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,975   copying build/lib/boltzgen/data/filter/dynamic/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,977   copying build/lib/boltzgen/data/filter/dynamic/error.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,979   copying build/lib/boltzgen/data/filter/dynamic/max_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-10-26T22:30:00,982   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/static
2025-10-26T22:30:00,983   copying build/lib/boltzgen/data/filter/static/ligand.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T22:30:00,985   copying build/lib/boltzgen/data/filter/static/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T22:30:00,986   copying build/lib/boltzgen/data/filter/static/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T22:30:00,988   copying build/lib/boltzgen/data/filter/static/polymer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-10-26T22:30:00,991   creating build/bdist.linux-armv7l/wheel/boltzgen/data/sample
2025-10-26T22:30:00,992   copying build/lib/boltzgen/data/sample/sampler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T22:30:00,994   copying build/lib/boltzgen/data/sample/cluster.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T22:30:00,997   copying build/lib/boltzgen/data/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-10-26T22:30:00,999   creating build/bdist.linux-armv7l/wheel/boltzgen/data/write
2025-10-26T22:30:01,000   copying build/lib/boltzgen/data/write/pdb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T22:30:01,002   copying build/lib/boltzgen/data/write/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T22:30:01,004   copying build/lib/boltzgen/data/write/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-10-26T22:30:01,007   copying build/lib/boltzgen/data/pad.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-10-26T22:30:01,009   creating build/bdist.linux-armv7l/wheel/boltzgen/model
2025-10-26T22:30:01,011   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers
2025-10-26T22:30:01,012   copying build/lib/boltzgen/model/layers/pair_averaging.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,014   copying build/lib/boltzgen/model/layers/initialize.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,016   copying build/lib/boltzgen/model/layers/outer_product_mean.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,018   copying build/lib/boltzgen/model/layers/transition.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,020   copying build/lib/boltzgen/model/layers/triangular.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,022   copying build/lib/boltzgen/model/layers/relative.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,024   copying build/lib/boltzgen/model/layers/pairformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,027   copying build/lib/boltzgen/model/layers/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,028   copying build/lib/boltzgen/model/layers/miniformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,031   copying build/lib/boltzgen/model/layers/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,033   copying build/lib/boltzgen/model/layers/dropout.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,035   copying build/lib/boltzgen/model/layers/confidence_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-10-26T22:30:01,038   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers/triangular_attention
2025-10-26T22:30:01,039   copying build/lib/boltzgen/model/layers/triangular_attention/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T22:30:01,042   copying build/lib/boltzgen/model/layers/triangular_attention/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T22:30:01,043   copying build/lib/boltzgen/model/layers/triangular_attention/primitives.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T22:30:01,046   copying build/lib/boltzgen/model/layers/triangular_attention/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-10-26T22:30:01,049   creating build/bdist.linux-armv7l/wheel/boltzgen/model/modules
2025-10-26T22:30:01,050   copying build/lib/boltzgen/model/modules/transformers.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,053   copying build/lib/boltzgen/model/modules/affinity.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,055   copying build/lib/boltzgen/model/modules/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,058   copying build/lib/boltzgen/model/modules/inverse_fold.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,061   copying build/lib/boltzgen/model/modules/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,063   copying build/lib/boltzgen/model/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,065   copying build/lib/boltzgen/model/modules/diffusion_conditioning.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,067   copying build/lib/boltzgen/model/modules/scatter_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,069   copying build/lib/boltzgen/model/modules/encoders.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,072   copying build/lib/boltzgen/model/modules/trunk.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,075   copying build/lib/boltzgen/model/modules/masker.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,077   copying build/lib/boltzgen/model/modules/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-10-26T22:30:01,080   creating build/bdist.linux-armv7l/wheel/boltzgen/model/loss
2025-10-26T22:30:01,081   copying build/lib/boltzgen/model/loss/distogram.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T22:30:01,083   copying build/lib/boltzgen/model/loss/bfactor.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T22:30:01,085   copying build/lib/boltzgen/model/loss/validation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T22:30:01,089   copying build/lib/boltzgen/model/loss/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T22:30:01,091   copying build/lib/boltzgen/model/loss/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T22:30:01,093   copying build/lib/boltzgen/model/loss/res_type.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T22:30:01,095   copying build/lib/boltzgen/model/loss/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-10-26T22:30:01,097   creating build/bdist.linux-armv7l/wheel/boltzgen/model/optim
2025-10-26T22:30:01,098   copying build/lib/boltzgen/model/optim/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T22:30:01,100   copying build/lib/boltzgen/model/optim/scheduler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T22:30:01,102   copying build/lib/boltzgen/model/optim/ema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-10-26T22:30:01,105   creating build/bdist.linux-armv7l/wheel/boltzgen/model/models
2025-10-26T22:30:01,106   copying build/lib/boltzgen/model/models/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-10-26T22:30:01,107   copying build/lib/boltzgen/model/models/boltz.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-10-26T22:30:01,111   copying build/lib/boltzgen/model/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model
2025-10-26T22:30:01,113   creating build/bdist.linux-armv7l/wheel/boltzgen/model/validation
2025-10-26T22:30:01,114   copying build/lib/boltzgen/model/validation/refolding.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T22:30:01,117   copying build/lib/boltzgen/model/validation/validator.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T22:30:01,119   copying build/lib/boltzgen/model/validation/design.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T22:30:01,122   copying build/lib/boltzgen/model/validation/rcsb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-10-26T22:30:01,123   copying build/lib/boltzgen/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen
2025-10-26T22:30:01,125   creating build/bdist.linux-armv7l/wheel/boltzgen/utils
2025-10-26T22:30:01,126   copying build/lib/boltzgen/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T22:30:01,128   copying build/lib/boltzgen/utils/quiet.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T22:30:01,130   copying build/lib/boltzgen/utils/pipeline_progress_bar.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-10-26T22:30:01,132   creating build/bdist.linux-armv7l/wheel/boltzgen/task
2025-10-26T22:30:01,133   copying build/lib/boltzgen/task/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-10-26T22:30:01,136   creating build/bdist.linux-armv7l/wheel/boltzgen/task/analyze
2025-10-26T22:30:01,137   copying build/lib/boltzgen/task/analyze/analyze_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-10-26T22:30:01,140   copying build/lib/boltzgen/task/analyze/analyze.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-10-26T22:30:01,143   creating build/bdist.linux-armv7l/wheel/boltzgen/task/train
2025-10-26T22:30:01,144   copying build/lib/boltzgen/task/train/train.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T22:30:01,146   copying build/lib/boltzgen/task/train/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T22:30:01,149   copying build/lib/boltzgen/task/train/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-10-26T22:30:01,151   copying build/lib/boltzgen/task/task.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-10-26T22:30:01,153   creating build/bdist.linux-armv7l/wheel/boltzgen/task/predict
2025-10-26T22:30:01,154   copying build/lib/boltzgen/task/predict/loading_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T22:30:01,155   copying build/lib/boltzgen/task/predict/writer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T22:30:01,158   copying build/lib/boltzgen/task/predict/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T22:30:01,159   copying build/lib/boltzgen/task/predict/data_from_yaml.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T22:30:01,161   copying build/lib/boltzgen/task/predict/predict.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T22:30:01,164   copying build/lib/boltzgen/task/predict/data_from_generated.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-10-26T22:30:01,167   creating build/bdist.linux-armv7l/wheel/boltzgen/task/filter
2025-10-26T22:30:01,168   copying build/lib/boltzgen/task/filter/seqplot_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T22:30:01,170   copying build/lib/boltzgen/task/filter/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T22:30:01,173   copying build/lib/boltzgen/task/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-10-26T22:30:01,175   creating build/bdist.linux-armv7l/wheel/boltzgen/cli
2025-10-26T22:30:01,177   copying build/lib/boltzgen/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-10-26T22:30:01,178   copying build/lib/boltzgen/cli/boltzgen.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-10-26T22:30:01,182   creating build/bdist.linux-armv7l/wheel/boltzgen/resources
2025-10-26T22:30:01,183   copying build/lib/boltzgen/resources/main.py -> build/bdist.linux-armv7l/wheel/./boltzgen/resources
2025-10-26T22:30:01,185   creating build/bdist.linux-armv7l/wheel/boltzgen/resources/config
2025-10-26T22:30:01,186   copying build/lib/boltzgen/resources/config/design.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-10-26T22:30:01,188   copying build/lib/boltzgen/resources/config/inverse_fold.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-10-26T22:30:01,190   copying build/lib/boltzgen/resources/config/affinity.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-10-26T22:30:01,192   copying build/lib/boltzgen/resources/config/filtering.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-10-26T22:30:01,194   creating build/bdist.linux-armv7l/wheel/boltzgen/resources/config/train
2025-10-26T22:30:01,195   copying build/lib/boltzgen/resources/config/train/boltzgen_small.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config/train
2025-10-26T22:30:01,198   copying build/lib/boltzgen/resources/config/train/inverse_folding.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config/train
2025-10-26T22:30:01,200   copying build/lib/boltzgen/resources/config/train/boltzgen.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config/train
2025-10-26T22:30:01,203   copying build/lib/boltzgen/resources/config/fold.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-10-26T22:30:01,204   copying build/lib/boltzgen/resources/config/analysis.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-10-26T22:30:01,206   copying build/lib/boltzgen/resources/config/inverse_fold_only.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-10-26T22:30:01,208   running install_egg_info
2025-10-26T22:30:01,213   Copying src/boltzgen.egg-info to build/bdist.linux-armv7l/wheel/./boltzgen-0.1.2-py3.11.egg-info
2025-10-26T22:30:01,224   running install_scripts
2025-10-26T22:30:01,235   creating build/bdist.linux-armv7l/wheel/boltzgen-0.1.2.dist-info/WHEEL
2025-10-26T22:30:01,238   creating '/tmp/pip-wheel-q0kfx8c8/.tmp-3vrcoh0a/boltzgen-0.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-26T22:30:01,240   adding 'boltzgen/__init__.py'
2025-10-26T22:30:01,241   adding 'boltzgen/cli/__init__.py'
2025-10-26T22:30:01,248   adding 'boltzgen/cli/boltzgen.py'
2025-10-26T22:30:01,250   adding 'boltzgen/data/__init__.py'
2025-10-26T22:30:01,258   adding 'boltzgen/data/const.py'
2025-10-26T22:30:01,266   adding 'boltzgen/data/data.py'
2025-10-26T22:30:01,271   adding 'boltzgen/data/mol.py'
2025-10-26T22:30:01,273   adding 'boltzgen/data/pad.py'
2025-10-26T22:30:01,274   adding 'boltzgen/data/rmsd_computation.py'
2025-10-26T22:30:01,276   adding 'boltzgen/data/crop/__init__.py'
2025-10-26T22:30:01,277   adding 'boltzgen/data/crop/cropper.py'
2025-10-26T22:30:01,279   adding 'boltzgen/data/crop/multimer.py'
2025-10-26T22:30:01,281   adding 'boltzgen/data/feature/__init__.py'
2025-10-26T22:30:01,290   adding 'boltzgen/data/feature/featurizer.py'
2025-10-26T22:30:01,292   adding 'boltzgen/data/filter/__init__.py'
2025-10-26T22:30:01,294   adding 'boltzgen/data/filter/dynamic/__init__.py'
2025-10-26T22:30:01,295   adding 'boltzgen/data/filter/dynamic/confidence.py'
2025-10-26T22:30:01,297   adding 'boltzgen/data/filter/dynamic/date.py'
2025-10-26T22:30:01,298   adding 'boltzgen/data/filter/dynamic/error.py'
2025-10-26T22:30:01,299   adding 'boltzgen/data/filter/dynamic/filter.py'
2025-10-26T22:30:01,300   adding 'boltzgen/data/filter/dynamic/max_residues.py'
2025-10-26T22:30:01,302   adding 'boltzgen/data/filter/dynamic/min_protein_residues.py'
2025-10-26T22:30:01,303   adding 'boltzgen/data/filter/dynamic/pdb_id_txtfile.py'
2025-10-26T22:30:01,304   adding 'boltzgen/data/filter/dynamic/resolution.py'
2025-10-26T22:30:01,305   adding 'boltzgen/data/filter/dynamic/size.py'
2025-10-26T22:30:01,307   adding 'boltzgen/data/filter/static/__init__.py'
2025-10-26T22:30:01,308   adding 'boltzgen/data/filter/static/filter.py'
2025-10-26T22:30:01,310   adding 'boltzgen/data/filter/static/ligand.py'
2025-10-26T22:30:01,311   adding 'boltzgen/data/filter/static/polymer.py'
2025-10-26T22:30:01,313   adding 'boltzgen/data/parse/__init__.py'
2025-10-26T22:30:01,314   adding 'boltzgen/data/parse/a3m.py'
2025-10-26T22:30:01,320   adding 'boltzgen/data/parse/mmcif.py'
2025-10-26T22:30:01,322   adding 'boltzgen/data/parse/pdb_parser.py'
2025-10-26T22:30:01,330   adding 'boltzgen/data/parse/schema.py'
2025-10-26T22:30:01,332   adding 'boltzgen/data/sample/__init__.py'
2025-10-26T22:30:01,333   adding 'boltzgen/data/sample/cluster.py'
2025-10-26T22:30:01,335   adding 'boltzgen/data/sample/sampler.py'
2025-10-26T22:30:01,336   adding 'boltzgen/data/select/__init__.py'
2025-10-26T22:30:01,339   adding 'boltzgen/data/select/protein.py'
2025-10-26T22:30:01,341   adding 'boltzgen/data/select/selector.py'
2025-10-26T22:30:01,342   adding 'boltzgen/data/template/__init__.py'
2025-10-26T22:30:01,344   adding 'boltzgen/data/template/features.py'
2025-10-26T22:30:01,345   adding 'boltzgen/data/tokenize/__init__.py'
2025-10-26T22:30:01,347   adding 'boltzgen/data/tokenize/tokenizer.py'
2025-10-26T22:30:01,349   adding 'boltzgen/data/write/__init__.py'
2025-10-26T22:30:01,351   adding 'boltzgen/data/write/mmcif.py'
2025-10-26T22:30:01,353   adding 'boltzgen/data/write/pdb.py'
2025-10-26T22:30:01,354   adding 'boltzgen/model/__init__.py'
2025-10-26T22:30:01,356   adding 'boltzgen/model/layers/__init__.py'
2025-10-26T22:30:01,357   adding 'boltzgen/model/layers/attention.py'
2025-10-26T22:30:01,359   adding 'boltzgen/model/layers/confidence_utils.py'
2025-10-26T22:30:01,361   adding 'boltzgen/model/layers/dropout.py'
2025-10-26T22:30:01,362   adding 'boltzgen/model/layers/initialize.py'
2025-10-26T22:30:01,363   adding 'boltzgen/model/layers/miniformer.py'
2025-10-26T22:30:01,364   adding 'boltzgen/model/layers/outer_product_mean.py'
2025-10-26T22:30:01,365   adding 'boltzgen/model/layers/pair_averaging.py'
2025-10-26T22:30:01,367   adding 'boltzgen/model/layers/pairformer.py'
2025-10-26T22:30:01,368   adding 'boltzgen/model/layers/relative.py'
2025-10-26T22:30:01,369   adding 'boltzgen/model/layers/transition.py'
2025-10-26T22:30:01,371   adding 'boltzgen/model/layers/triangular.py'
2025-10-26T22:30:01,372   adding 'boltzgen/model/layers/triangular_attention/__init__.py'
2025-10-26T22:30:01,374   adding 'boltzgen/model/layers/triangular_attention/attention.py'
2025-10-26T22:30:01,376   adding 'boltzgen/model/layers/triangular_attention/primitives.py'
2025-10-26T22:30:01,378   adding 'boltzgen/model/layers/triangular_attention/utils.py'
2025-10-26T22:30:01,379   adding 'boltzgen/model/loss/__init__.py'
2025-10-26T22:30:01,381   adding 'boltzgen/model/loss/bfactor.py'
2025-10-26T22:30:01,383   adding 'boltzgen/model/loss/confidence.py'
2025-10-26T22:30:01,385   adding 'boltzgen/model/loss/diffusion.py'
2025-10-26T22:30:01,386   adding 'boltzgen/model/loss/distogram.py'
2025-10-26T22:30:01,387   adding 'boltzgen/model/loss/res_type.py'
2025-10-26T22:30:01,392   adding 'boltzgen/model/loss/validation.py'
2025-10-26T22:30:01,394   adding 'boltzgen/model/models/__init__.py'
2025-10-26T22:30:01,400   adding 'boltzgen/model/models/boltz.py'
2025-10-26T22:30:01,402   adding 'boltzgen/model/modules/__init__.py'
2025-10-26T22:30:01,404   adding 'boltzgen/model/modules/affinity.py'
2025-10-26T22:30:01,406   adding 'boltzgen/model/modules/confidence.py'
2025-10-26T22:30:01,410   adding 'boltzgen/model/modules/diffusion.py'
2025-10-26T22:30:01,411   adding 'boltzgen/model/modules/diffusion_conditioning.py'
2025-10-26T22:30:01,414   adding 'boltzgen/model/modules/encoders.py'
2025-10-26T22:30:01,417   adding 'boltzgen/model/modules/inverse_fold.py'
2025-10-26T22:30:01,418   adding 'boltzgen/model/modules/masker.py'
2025-10-26T22:30:01,420   adding 'boltzgen/model/modules/scatter_utils.py'
2025-10-26T22:30:01,421   adding 'boltzgen/model/modules/transformers.py'
2025-10-26T22:30:01,424   adding 'boltzgen/model/modules/trunk.py'
2025-10-26T22:30:01,426   adding 'boltzgen/model/modules/utils.py'
2025-10-26T22:30:01,428   adding 'boltzgen/model/optim/__init__.py'
2025-10-26T22:30:01,429   adding 'boltzgen/model/optim/ema.py'
2025-10-26T22:30:01,431   adding 'boltzgen/model/optim/scheduler.py'
2025-10-26T22:30:01,433   adding 'boltzgen/model/validation/design.py'
2025-10-26T22:30:01,434   adding 'boltzgen/model/validation/rcsb.py'
2025-10-26T22:30:01,436   adding 'boltzgen/model/validation/refolding.py'
2025-10-26T22:30:01,439   adding 'boltzgen/model/validation/validator.py'
2025-10-26T22:30:01,441   adding 'boltzgen/resources/main.py'
2025-10-26T22:30:01,443   adding 'boltzgen/resources/config/affinity.yaml'
2025-10-26T22:30:01,444   adding 'boltzgen/resources/config/analysis.yaml'
2025-10-26T22:30:01,445   adding 'boltzgen/resources/config/design.yaml'
2025-10-26T22:30:01,447   adding 'boltzgen/resources/config/filtering.yaml'
2025-10-26T22:30:01,448   adding 'boltzgen/resources/config/fold.yaml'
2025-10-26T22:30:01,450   adding 'boltzgen/resources/config/inverse_fold.yaml'
2025-10-26T22:30:01,451   adding 'boltzgen/resources/config/inverse_fold_only.yaml'
2025-10-26T22:30:01,454   adding 'boltzgen/resources/config/train/boltzgen.yaml'
2025-10-26T22:30:01,455   adding 'boltzgen/resources/config/train/boltzgen_small.yaml'
2025-10-26T22:30:01,457   adding 'boltzgen/resources/config/train/inverse_folding.yaml'
2025-10-26T22:30:01,459   adding 'boltzgen/task/__init__.py'
2025-10-26T22:30:01,460   adding 'boltzgen/task/task.py'
2025-10-26T22:30:01,466   adding 'boltzgen/task/analyze/analyze.py'
2025-10-26T22:30:01,471   adding 'boltzgen/task/analyze/analyze_utils.py'
2025-10-26T22:30:01,473   adding 'boltzgen/task/filter/__init__.py'
2025-10-26T22:30:01,478   adding 'boltzgen/task/filter/filter.py'
2025-10-26T22:30:01,481   adding 'boltzgen/task/filter/seqplot_utils.py'
2025-10-26T22:30:01,482   adding 'boltzgen/task/predict/__init__.py'
2025-10-26T22:30:01,486   adding 'boltzgen/task/predict/data_from_generated.py'
2025-10-26T22:30:01,488   adding 'boltzgen/task/predict/data_from_yaml.py'
2025-10-26T22:30:01,489   adding 'boltzgen/task/predict/loading_utils.py'
2025-10-26T22:30:01,491   adding 'boltzgen/task/predict/predict.py'
2025-10-26T22:30:01,493   adding 'boltzgen/task/predict/writer.py'
2025-10-26T22:30:01,495   adding 'boltzgen/task/train/__init__.py'
2025-10-26T22:30:01,499   adding 'boltzgen/task/train/data.py'
2025-10-26T22:30:01,501   adding 'boltzgen/task/train/train.py'
2025-10-26T22:30:01,502   adding 'boltzgen/utils/__init__.py'
2025-10-26T22:30:01,503   adding 'boltzgen/utils/pipeline_progress_bar.py'
2025-10-26T22:30:01,505   adding 'boltzgen/utils/quiet.py'
2025-10-26T22:30:01,507   adding 'boltzgen-0.1.2.dist-info/licenses/LICENSE'
2025-10-26T22:30:01,508   adding 'boltzgen-0.1.2.dist-info/METADATA'
2025-10-26T22:30:01,509   adding 'boltzgen-0.1.2.dist-info/WHEEL'
2025-10-26T22:30:01,510   adding 'boltzgen-0.1.2.dist-info/entry_points.txt'
2025-10-26T22:30:01,511   adding 'boltzgen-0.1.2.dist-info/top_level.txt'
2025-10-26T22:30:01,513   adding 'boltzgen-0.1.2.dist-info/RECORD'
2025-10-26T22:30:01,519   removing build/bdist.linux-armv7l/wheel
2025-10-26T22:30:01,653   Building wheel for boltzgen (pyproject.toml): finished with status 'done'
2025-10-26T22:30:01,665   Created wheel for boltzgen: filename=boltzgen-0.1.2-py3-none-any.whl size=333159 sha256=540dfba80316dc74e1622a369e825b5debdf02aa7cb197ebbb311186113017c4
2025-10-26T22:30:01,666   Stored in directory: /tmp/pip-ephem-wheel-cache-bk2n38qz/wheels/78/0c/d4/52d723f9f22c38a31a1dd5e28f80012278d1c2a0fdbc7098d5
2025-10-26T22:30:01,681 Successfully built boltzgen
2025-10-26T22:30:01,695 Removed build tracker: '/tmp/pip-build-tracker-o1yq7m8f'