2025-10-28T22:38:23,444 Created temporary directory: /tmp/pip-ephem-wheel-cache-8qqu_5b8
2025-10-28T22:38:23,446 Created temporary directory: /tmp/pip-build-tracker-ka7n6mpn
2025-10-28T22:38:23,446 Initialized build tracking at /tmp/pip-build-tracker-ka7n6mpn
2025-10-28T22:38:23,447 Created build tracker: /tmp/pip-build-tracker-ka7n6mpn
2025-10-28T22:38:23,447 Entered build tracker: /tmp/pip-build-tracker-ka7n6mpn
2025-10-28T22:38:23,448 Created temporary directory: /tmp/pip-wheel-_ipqk7f4
2025-10-28T22:38:23,451 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-28T22:38:23,453 Created temporary directory: /tmp/pip-ephem-wheel-cache-bxdeyzhd
2025-10-28T22:38:23,477 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-28T22:38:23,481 2 location(s) to search for versions of sigprofilermatrixgenerator:
2025-10-28T22:38:23,481 * https://pypi.org/simple/sigprofilermatrixgenerator/
2025-10-28T22:38:23,481 * https://www.piwheels.org/simple/sigprofilermatrixgenerator/
2025-10-28T22:38:23,482 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilermatrixgenerator/
2025-10-28T22:38:23,482 Getting page https://pypi.org/simple/sigprofilermatrixgenerator/
2025-10-28T22:38:23,484 Found index url https://pypi.org/simple
2025-10-28T22:38:23,716 Fetched page https://pypi.org/simple/sigprofilermatrixgenerator/ as application/vnd.pypi.simple.v1+json
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2025-10-28T22:38:23,748   Found link https://files.pythonhosted.org/packages/09/e0/a27c3a87eaa67985ed16425b07c6d0dbb9f2ed0bb370964a5eea8be9dc91/SigProfilerMatrixGenerator-0.1.2.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/), version: 0.1.2
2025-10-28T22:38:23,748   Found link https://files.pythonhosted.org/packages/bd/dd/b943503008f3dcda163b33e9402f52439b23c6b036cb328bcd37d6e7d010/SigProfilerMatrixGenerator-0.1.3.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/), version: 0.1.3
2025-10-28T22:38:23,749   Found link https://files.pythonhosted.org/packages/18/52/e8df4d5c50b73bee8f9ac77f5b30e1706176258c27c9ef81b20f467e3f60/SigProfilerMatrixGenerator-0.1.4.tar.gz (from https://pypi.org/simple/sigprofilermatrixgenerator/), version: 0.1.4
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2025-10-28T22:38:24,145   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.14-py3-none-any.whl#sha256=35fcddd4e462deee7959573e5e45dfa75d3f2b4ffce81939750a96eedac0b49d (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,146   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.13-py3-none-any.whl#sha256=fbb27c504c29ed32596c118b00da8aa59f67854e86799b0b330f8a9f2470037a (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,146   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.12-py3-none-any.whl#sha256=24992b19ac04769baed3433c1b795f09597f608117d9e33c67bf40e474e99e84 (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,147   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.11-py3-none-any.whl#sha256=c3b1761ab13a6dfb85050409e587eff691595bbf3b22248d8e45024792d0873d (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
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2025-10-28T22:38:24,148   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.9-py3-none-any.whl#sha256=15e07c22774c555e633b3c7365931ec869749f9e93699b316ad8b88b90e98661 (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,149   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.8-py3-none-any.whl#sha256=f8f015f2654820e23e139b06dad20b2b070c591cf3804c89728031fd465a1761 (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,150   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.7-py3-none-any.whl#sha256=2b7197f9e7546455ecec51a3668c35746722be54000330897cdb3bab16b2846c (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,150   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.6-py3-none-any.whl#sha256=9bb77768a94a36b84528c72712dcbab7060347122efa53e72efa67f7db5a4c1d (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,151   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.5-py3-none-any.whl#sha256=3bf26507e0f667a2958c8b58caa1307bf15b8dc11912252798fc227e99e98a0b (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,151   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.4-py3-none-any.whl#sha256=68f6f2f696d2ada3a780a59862675d42663d7c9e2e10563337ec01ab3e357dff (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,152   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.3-py3-none-any.whl#sha256=2c8f7184b84f55dd295a9ccbe96ba73b3f8746271bfd3844e25b8204b8df2044 (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,152   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.2-py3-none-any.whl#sha256=a77ce882dc149901406d631720a444648a7acde033b8599373cd1cf50ea132b5 (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,153   Skipping link: No binaries permitted for sigprofilermatrixgenerator: https://archive1.piwheels.org/simple/sigprofilermatrixgenerator/SigProfilerMatrixGenerator-0.1.1-py3-none-any.whl#sha256=e2a5663dc832700fdb64b22350ca8b0d792920cd1a1ec3cbec1f670ebd911a30 (from https://www.piwheels.org/simple/sigprofilermatrixgenerator/)
2025-10-28T22:38:24,154 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilermatrixgenerator/
2025-10-28T22:38:24,154 Skipping link: not a file: https://pypi.org/simple/sigprofilermatrixgenerator/
2025-10-28T22:38:24,188 Given no hashes to check 1 links for project 'sigprofilermatrixgenerator': discarding no candidates
2025-10-28T22:38:24,206 Collecting sigprofilermatrixgenerator==1.3.6
2025-10-28T22:38:24,209   Created temporary directory: /tmp/pip-unpack-7xcd85w8
2025-10-28T22:38:24,345   Downloading sigprofilermatrixgenerator-1.3.6.tar.gz (46.6 MB)
2025-10-28T22:38:36,776   Added sigprofilermatrixgenerator==1.3.6 from https://files.pythonhosted.org/packages/c7/a1/d7cb7b802e475cbc47ea2521467fba8cf4f7e8b694a2026b40aa752c362c/sigprofilermatrixgenerator-1.3.6.tar.gz to build tracker '/tmp/pip-build-tracker-ka7n6mpn'
2025-10-28T22:38:36,781   Created temporary directory: /tmp/pip-build-env-6cipbmmn
2025-10-28T22:38:36,786   Installing build dependencies: started
2025-10-28T22:38:36,787   Running command pip subprocess to install build dependencies
2025-10-28T22:38:37,943   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-28T22:38:38,519   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-28T22:38:38,542   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-28T22:38:40,249   Collecting setuptools>=61
2025-10-28T22:38:40,348     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-28T22:38:40,616   Collecting wheel
2025-10-28T22:38:40,633     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-10-28T22:38:40,768   Collecting build
2025-10-28T22:38:40,784     Using cached https://www.piwheels.org/simple/build/build-1.3.0-py3-none-any.whl (23 kB)
2025-10-28T22:38:40,999   Collecting packaging>=19.1
2025-10-28T22:38:41,017     Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB)
2025-10-28T22:38:41,083   Collecting pyproject_hooks
2025-10-28T22:38:41,097     Using cached https://www.piwheels.org/simple/pyproject-hooks/pyproject_hooks-1.2.0-py3-none-any.whl (10 kB)
2025-10-28T22:38:44,032   Installing collected packages: wheel, setuptools, pyproject_hooks, packaging, build
2025-10-28T22:38:44,280     Creating /tmp/pip-build-env-6cipbmmn/overlay/local/bin
2025-10-28T22:38:44,283     changing mode of /tmp/pip-build-env-6cipbmmn/overlay/local/bin/wheel to 755
2025-10-28T22:38:48,403     changing mode of /tmp/pip-build-env-6cipbmmn/overlay/local/bin/pyproject-build to 755
2025-10-28T22:38:48,437   Successfully installed build-1.3.0 packaging-25.0 pyproject_hooks-1.2.0 setuptools-80.9.0 wheel-0.45.1
2025-10-28T22:38:48,719   Installing build dependencies: finished with status 'done'
2025-10-28T22:38:48,726   Getting requirements to build wheel: started
2025-10-28T22:38:48,727   Running command Getting requirements to build wheel
2025-10-28T22:38:49,342   running egg_info
2025-10-28T22:38:49,349   writing SigProfilerMatrixGenerator.egg-info/PKG-INFO
2025-10-28T22:38:49,354   writing dependency_links to SigProfilerMatrixGenerator.egg-info/dependency_links.txt
2025-10-28T22:38:49,356   writing entry points to SigProfilerMatrixGenerator.egg-info/entry_points.txt
2025-10-28T22:38:49,358   writing requirements to SigProfilerMatrixGenerator.egg-info/requires.txt
2025-10-28T22:38:49,359   writing top-level names to SigProfilerMatrixGenerator.egg-info/top_level.txt
2025-10-28T22:38:49,390   reading manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt'
2025-10-28T22:38:49,826   reading manifest template 'MANIFEST.in'
2025-10-28T22:38:50,168   adding license file 'LICENSE'
2025-10-28T22:38:50,220   writing manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt'
2025-10-28T22:38:50,309   Getting requirements to build wheel: finished with status 'done'
2025-10-28T22:38:50,313   Created temporary directory: /tmp/pip-modern-metadata-2f_oui57
2025-10-28T22:38:50,315   Preparing metadata (pyproject.toml): started
2025-10-28T22:38:50,316   Running command Preparing metadata (pyproject.toml)
2025-10-28T22:38:50,888   running dist_info
2025-10-28T22:38:50,901   creating /tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info
2025-10-28T22:38:50,903   writing /tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/PKG-INFO
2025-10-28T22:38:50,908   writing dependency_links to /tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/dependency_links.txt
2025-10-28T22:38:50,910   writing entry points to /tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/entry_points.txt
2025-10-28T22:38:50,911   writing requirements to /tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/requires.txt
2025-10-28T22:38:50,912   writing top-level names to /tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/top_level.txt
2025-10-28T22:38:50,914   writing manifest file '/tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/SOURCES.txt'
2025-10-28T22:38:50,941   reading manifest file '/tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/SOURCES.txt'
2025-10-28T22:38:50,943   reading manifest template 'MANIFEST.in'
2025-10-28T22:38:51,306   adding license file 'LICENSE'
2025-10-28T22:38:51,340   writing manifest file '/tmp/pip-modern-metadata-2f_oui57/SigProfilerMatrixGenerator.egg-info/SOURCES.txt'
2025-10-28T22:38:51,343   creating '/tmp/pip-modern-metadata-2f_oui57/sigprofilermatrixgenerator-1.3.6.dist-info'
2025-10-28T22:38:51,483   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-28T22:38:51,489   Source in /tmp/pip-wheel-_ipqk7f4/sigprofilermatrixgenerator_3cd122691cb14d018c4a514d0a890823 has version 1.3.6, which satisfies requirement sigprofilermatrixgenerator==1.3.6 from https://files.pythonhosted.org/packages/c7/a1/d7cb7b802e475cbc47ea2521467fba8cf4f7e8b694a2026b40aa752c362c/sigprofilermatrixgenerator-1.3.6.tar.gz
2025-10-28T22:38:51,490   Removed sigprofilermatrixgenerator==1.3.6 from https://files.pythonhosted.org/packages/c7/a1/d7cb7b802e475cbc47ea2521467fba8cf4f7e8b694a2026b40aa752c362c/sigprofilermatrixgenerator-1.3.6.tar.gz from build tracker '/tmp/pip-build-tracker-ka7n6mpn'
2025-10-28T22:38:51,496 Created temporary directory: /tmp/pip-unpack-_q219mod
2025-10-28T22:38:51,497 Building wheels for collected packages: sigprofilermatrixgenerator
2025-10-28T22:38:51,502   Created temporary directory: /tmp/pip-wheel-ckdv2wmt
2025-10-28T22:38:51,502   Destination directory: /tmp/pip-wheel-ckdv2wmt
2025-10-28T22:38:51,505   Building wheel for sigprofilermatrixgenerator (pyproject.toml): started
2025-10-28T22:38:51,506   Running command Building wheel for sigprofilermatrixgenerator (pyproject.toml)
2025-10-28T22:38:52,111   running bdist_wheel
2025-10-28T22:38:52,145   running build
2025-10-28T22:38:52,145   running build_py
2025-10-28T22:38:52,156   creating build/lib/SigProfilerMatrixGenerator
2025-10-28T22:38:52,158   copying SigProfilerMatrixGenerator/version.py -> build/lib/SigProfilerMatrixGenerator
2025-10-28T22:38:52,160   copying SigProfilerMatrixGenerator/install.py -> build/lib/SigProfilerMatrixGenerator
2025-10-28T22:38:52,163   copying SigProfilerMatrixGenerator/__init__.py -> build/lib/SigProfilerMatrixGenerator
2025-10-28T22:38:52,165   copying SigProfilerMatrixGenerator/test_helpers.py -> build/lib/SigProfilerMatrixGenerator
2025-10-28T22:38:52,167   running egg_info
2025-10-28T22:38:52,181   writing SigProfilerMatrixGenerator.egg-info/PKG-INFO
2025-10-28T22:38:52,185   writing dependency_links to SigProfilerMatrixGenerator.egg-info/dependency_links.txt
2025-10-28T22:38:52,186   writing entry points to SigProfilerMatrixGenerator.egg-info/entry_points.txt
2025-10-28T22:38:52,188   writing requirements to SigProfilerMatrixGenerator.egg-info/requires.txt
2025-10-28T22:38:52,189   writing top-level names to SigProfilerMatrixGenerator.egg-info/top_level.txt
2025-10-28T22:38:52,199   reading manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt'
2025-10-28T22:38:52,255   reading manifest template 'MANIFEST.in'
2025-10-28T22:38:52,602   adding license file 'LICENSE'
2025-10-28T22:38:52,655   writing manifest file 'SigProfilerMatrixGenerator.egg-info/SOURCES.txt'
2025-10-28T22:38:52,659   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.controllers' is absent from the `packages` configuration.
2025-10-28T22:38:52,660   !!

2025-10-28T22:38:52,661           ********************************************************************************
2025-10-28T22:38:52,662           ############################
2025-10-28T22:38:52,662           # Package would be ignored #
2025-10-28T22:38:52,663           ############################
2025-10-28T22:38:52,663           Python recognizes 'SigProfilerMatrixGenerator.controllers' as an importable package[^1],
2025-10-28T22:38:52,664           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,664           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,665           package, please make sure that 'SigProfilerMatrixGenerator.controllers' is explicitly added
2025-10-28T22:38:52,665           to the `packages` configuration field.

2025-10-28T22:38:52,666           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,667           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,667           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,668           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,669           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,670           If you don't want 'SigProfilerMatrixGenerator.controllers' to be distributed and are
2025-10-28T22:38:52,670           already explicitly excluding 'SigProfilerMatrixGenerator.controllers' via
2025-10-28T22:38:52,671           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,671           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,672           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,673           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,674           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,676           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,676                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,677                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,678                 directory, all directories are treated like packages.
2025-10-28T22:38:52,678           ********************************************************************************

2025-10-28T22:38:52,680   !!
2025-10-28T22:38:52,680     check.warn(importable)
2025-10-28T22:38:52,681   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV' is absent from the `packages` configuration.
2025-10-28T22:38:52,681   !!

2025-10-28T22:38:52,683           ********************************************************************************
2025-10-28T22:38:52,683           ############################
2025-10-28T22:38:52,684           # Package would be ignored #
2025-10-28T22:38:52,684           ############################
2025-10-28T22:38:52,685           Python recognizes 'SigProfilerMatrixGenerator.references.CNV' as an importable package[^1],
2025-10-28T22:38:52,685           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,686           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,687           package, please make sure that 'SigProfilerMatrixGenerator.references.CNV' is explicitly added
2025-10-28T22:38:52,688           to the `packages` configuration field.

2025-10-28T22:38:52,689           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,690           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,690           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,692           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,692           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,693           If you don't want 'SigProfilerMatrixGenerator.references.CNV' to be distributed and are
2025-10-28T22:38:52,694           already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV' via
2025-10-28T22:38:52,694           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,694           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,695           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,696           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,697           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,698           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,699                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,699                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,700                 directory, all directories are treated like packages.
2025-10-28T22:38:52,700           ********************************************************************************

2025-10-28T22:38:52,701   !!
2025-10-28T22:38:52,702     check.warn(importable)
2025-10-28T22:38:52,702   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV.example_input' is absent from the `packages` configuration.
2025-10-28T22:38:52,702   !!

2025-10-28T22:38:52,703           ********************************************************************************
2025-10-28T22:38:52,704           ############################
2025-10-28T22:38:52,704           # Package would be ignored #
2025-10-28T22:38:52,705           ############################
2025-10-28T22:38:52,705           Python recognizes 'SigProfilerMatrixGenerator.references.CNV.example_input' as an importable package[^1],
2025-10-28T22:38:52,706           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,707           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,708           package, please make sure that 'SigProfilerMatrixGenerator.references.CNV.example_input' is explicitly added
2025-10-28T22:38:52,708           to the `packages` configuration field.

2025-10-28T22:38:52,709           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,710           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,710           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,711           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,712           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,713           If you don't want 'SigProfilerMatrixGenerator.references.CNV.example_input' to be distributed and are
2025-10-28T22:38:52,714           already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV.example_input' via
2025-10-28T22:38:52,714           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,715           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,715           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,716           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,717           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,719           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,720                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,720                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,720                 directory, all directories are treated like packages.
2025-10-28T22:38:52,721           ********************************************************************************

2025-10-28T22:38:52,721   !!
2025-10-28T22:38:52,722     check.warn(importable)
2025-10-28T22:38:52,722   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.CNV.example_output' is absent from the `packages` configuration.
2025-10-28T22:38:52,722   !!

2025-10-28T22:38:52,723           ********************************************************************************
2025-10-28T22:38:52,723           ############################
2025-10-28T22:38:52,724           # Package would be ignored #
2025-10-28T22:38:52,724           ############################
2025-10-28T22:38:52,724           Python recognizes 'SigProfilerMatrixGenerator.references.CNV.example_output' as an importable package[^1],
2025-10-28T22:38:52,725           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,726           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,726           package, please make sure that 'SigProfilerMatrixGenerator.references.CNV.example_output' is explicitly added
2025-10-28T22:38:52,726           to the `packages` configuration field.

2025-10-28T22:38:52,727           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,728           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,728           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,729           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,730           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,731           If you don't want 'SigProfilerMatrixGenerator.references.CNV.example_output' to be distributed and are
2025-10-28T22:38:52,732           already explicitly excluding 'SigProfilerMatrixGenerator.references.CNV.example_output' via
2025-10-28T22:38:52,732           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,733           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,734           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,735           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,736           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,737           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,738                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,738                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,739                 directory, all directories are treated like packages.
2025-10-28T22:38:52,739           ********************************************************************************

2025-10-28T22:38:52,740   !!
2025-10-28T22:38:52,741     check.warn(importable)
2025-10-28T22:38:52,741   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input' is absent from the `packages` configuration.
2025-10-28T22:38:52,742   !!

2025-10-28T22:38:52,743           ********************************************************************************
2025-10-28T22:38:52,743           ############################
2025-10-28T22:38:52,744           # Package would be ignored #
2025-10-28T22:38:52,745           ############################
2025-10-28T22:38:52,745           Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input' as an importable package[^1],
2025-10-28T22:38:52,746           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,746           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,747           package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input' is explicitly added
2025-10-28T22:38:52,747           to the `packages` configuration field.

2025-10-28T22:38:52,748           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,748           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,749           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,749           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,750           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,751           If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input' to be distributed and are
2025-10-28T22:38:52,751           already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input' via
2025-10-28T22:38:52,752           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,752           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,753           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,754           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,755           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,757           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,757                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,758                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,759                 directory, all directories are treated like packages.
2025-10-28T22:38:52,759           ********************************************************************************

2025-10-28T22:38:52,761   !!
2025-10-28T22:38:52,761     check.warn(importable)
2025-10-28T22:38:52,762   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' is absent from the `packages` configuration.
2025-10-28T22:38:52,762   !!

2025-10-28T22:38:52,763           ********************************************************************************
2025-10-28T22:38:52,764           ############################
2025-10-28T22:38:52,764           # Package would be ignored #
2025-10-28T22:38:52,765           ############################
2025-10-28T22:38:52,765           Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' as an importable package[^1],
2025-10-28T22:38:52,766           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,767           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,767           package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' is explicitly added
2025-10-28T22:38:52,768           to the `packages` configuration field.

2025-10-28T22:38:52,769           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,770           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,770           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,771           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,773           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,773           If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' to be distributed and are
2025-10-28T22:38:52,774           already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input.PCAWG' via
2025-10-28T22:38:52,774           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,774           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,775           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,775           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,776           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,777           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,778                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,778                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,778                 directory, all directories are treated like packages.
2025-10-28T22:38:52,779           ********************************************************************************

2025-10-28T22:38:52,780   !!
2025-10-28T22:38:52,780     check.warn(importable)
2025-10-28T22:38:52,780   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' is absent from the `packages` configuration.
2025-10-28T22:38:52,781   !!

2025-10-28T22:38:52,782           ********************************************************************************
2025-10-28T22:38:52,782           ############################
2025-10-28T22:38:52,783           # Package would be ignored #
2025-10-28T22:38:52,783           ############################
2025-10-28T22:38:52,784           Python recognizes 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' as an importable package[^1],
2025-10-28T22:38:52,784           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,786           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,786           package, please make sure that 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' is explicitly added
2025-10-28T22:38:52,787           to the `packages` configuration field.

2025-10-28T22:38:52,788           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,789           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,789           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,790           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,791           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,792           If you don't want 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' to be distributed and are
2025-10-28T22:38:52,792           already explicitly excluding 'SigProfilerMatrixGenerator.references.SV.example_input.VCF' via
2025-10-28T22:38:52,793           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,793           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,794           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,795           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,796           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,798           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,798                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,799                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,800                 directory, all directories are treated like packages.
2025-10-28T22:38:52,800           ********************************************************************************

2025-10-28T22:38:52,801   !!
2025-10-28T22:38:52,801     check.warn(importable)
2025-10-28T22:38:52,801   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' is absent from the `packages` configuration.
2025-10-28T22:38:52,802   !!

2025-10-28T22:38:52,803           ********************************************************************************
2025-10-28T22:38:52,803           ############################
2025-10-28T22:38:52,803           # Package would be ignored #
2025-10-28T22:38:52,804           ############################
2025-10-28T22:38:52,804           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' as an importable package[^1],
2025-10-28T22:38:52,804           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,805           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,806           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' is explicitly added
2025-10-28T22:38:52,806           to the `packages` configuration field.

2025-10-28T22:38:52,807           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,807           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,808           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,809           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,810           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,811           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' to be distributed and are
2025-10-28T22:38:52,812           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.context_distributions' via
2025-10-28T22:38:52,812           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,813           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,814           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,815           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,816           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,817           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,817                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,818                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,818                 directory, all directories are treated like packages.
2025-10-28T22:38:52,819           ********************************************************************************

2025-10-28T22:38:52,820   !!
2025-10-28T22:38:52,820     check.warn(importable)
2025-10-28T22:38:52,821   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome' is absent from the `packages` configuration.
2025-10-28T22:38:52,822   !!

2025-10-28T22:38:52,823           ********************************************************************************
2025-10-28T22:38:52,823           ############################
2025-10-28T22:38:52,824           # Package would be ignored #
2025-10-28T22:38:52,825           ############################
2025-10-28T22:38:52,825           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome' as an importable package[^1],
2025-10-28T22:38:52,826           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,826           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,827           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome' is explicitly added
2025-10-28T22:38:52,827           to the `packages` configuration field.

2025-10-28T22:38:52,828           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,829           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,829           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,830           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,831           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,832           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome' to be distributed and are
2025-10-28T22:38:52,832           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome' via
2025-10-28T22:38:52,833           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,833           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,833           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,834           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,835           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,837           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,837                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,838                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,838                 directory, all directories are treated like packages.
2025-10-28T22:38:52,839           ********************************************************************************

2025-10-28T22:38:52,840   !!
2025-10-28T22:38:52,841     check.warn(importable)
2025-10-28T22:38:52,841   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' is absent from the `packages` configuration.
2025-10-28T22:38:52,842   !!

2025-10-28T22:38:52,843           ********************************************************************************
2025-10-28T22:38:52,844           ############################
2025-10-28T22:38:52,844           # Package would be ignored #
2025-10-28T22:38:52,845           ############################
2025-10-28T22:38:52,845           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' as an importable package[^1],
2025-10-28T22:38:52,846           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,847           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,847           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' is explicitly added
2025-10-28T22:38:52,848           to the `packages` configuration field.

2025-10-28T22:38:52,849           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,850           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,850           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,851           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,852           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,853           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' to be distributed and are
2025-10-28T22:38:52,853           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh37' via
2025-10-28T22:38:52,854           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,854           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,854           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,855           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,856           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,857           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,857                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,858                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,858                 directory, all directories are treated like packages.
2025-10-28T22:38:52,858           ********************************************************************************

2025-10-28T22:38:52,859   !!
2025-10-28T22:38:52,860     check.warn(importable)
2025-10-28T22:38:52,860   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' is absent from the `packages` configuration.
2025-10-28T22:38:52,860   !!

2025-10-28T22:38:52,861           ********************************************************************************
2025-10-28T22:38:52,862           ############################
2025-10-28T22:38:52,862           # Package would be ignored #
2025-10-28T22:38:52,863           ############################
2025-10-28T22:38:52,863           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' as an importable package[^1],
2025-10-28T22:38:52,864           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,865           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,866           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' is explicitly added
2025-10-28T22:38:52,866           to the `packages` configuration field.

2025-10-28T22:38:52,867           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,868           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,868           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,869           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,870           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,871           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' to be distributed and are
2025-10-28T22:38:52,872           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.GRCh38' via
2025-10-28T22:38:52,872           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,872           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,873           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,874           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,875           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,877           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,877                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,877                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,878                 directory, all directories are treated like packages.
2025-10-28T22:38:52,878           ********************************************************************************

2025-10-28T22:38:52,879   !!
2025-10-28T22:38:52,879     check.warn(importable)
2025-10-28T22:38:52,879   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' is absent from the `packages` configuration.
2025-10-28T22:38:52,880   !!

2025-10-28T22:38:52,881           ********************************************************************************
2025-10-28T22:38:52,881           ############################
2025-10-28T22:38:52,881           # Package would be ignored #
2025-10-28T22:38:52,882           ############################
2025-10-28T22:38:52,882           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' as an importable package[^1],
2025-10-28T22:38:52,882           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,883           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,884           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' is explicitly added
2025-10-28T22:38:52,884           to the `packages` configuration field.

2025-10-28T22:38:52,885           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,885           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,886           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,887           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,888           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,889           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' to be distributed and are
2025-10-28T22:38:52,890           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.c_elegans' via
2025-10-28T22:38:52,890           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,891           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,891           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,892           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,893           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,895           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,895                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,896                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,896                 directory, all directories are treated like packages.
2025-10-28T22:38:52,897           ********************************************************************************

2025-10-28T22:38:52,898   !!
2025-10-28T22:38:52,899     check.warn(importable)
2025-10-28T22:38:52,899   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' is absent from the `packages` configuration.
2025-10-28T22:38:52,900   !!

2025-10-28T22:38:52,901           ********************************************************************************
2025-10-28T22:38:52,902           ############################
2025-10-28T22:38:52,902           # Package would be ignored #
2025-10-28T22:38:52,903           ############################
2025-10-28T22:38:52,904           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' as an importable package[^1],
2025-10-28T22:38:52,904           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,905           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,905           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' is explicitly added
2025-10-28T22:38:52,905           to the `packages` configuration field.

2025-10-28T22:38:52,906           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,906           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,907           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,908           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,908           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,909           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' to be distributed and are
2025-10-28T22:38:52,910           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.dog' via
2025-10-28T22:38:52,910           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,910           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,911           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,912           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,913           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,914           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,915                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,915                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,916                 directory, all directories are treated like packages.
2025-10-28T22:38:52,916           ********************************************************************************

2025-10-28T22:38:52,917   !!
2025-10-28T22:38:52,918     check.warn(importable)
2025-10-28T22:38:52,918   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' is absent from the `packages` configuration.
2025-10-28T22:38:52,919   !!

2025-10-28T22:38:52,920           ********************************************************************************
2025-10-28T22:38:52,920           ############################
2025-10-28T22:38:52,921           # Package would be ignored #
2025-10-28T22:38:52,921           ############################
2025-10-28T22:38:52,922           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' as an importable package[^1],
2025-10-28T22:38:52,922           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,923           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,924           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' is explicitly added
2025-10-28T22:38:52,924           to the `packages` configuration field.

2025-10-28T22:38:52,925           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,926           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,926           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,928           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,928           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,929           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' to be distributed and are
2025-10-28T22:38:52,929           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.ebv' via
2025-10-28T22:38:52,930           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,930           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,930           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,931           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,932           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,933           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,933                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,934                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,934                 directory, all directories are treated like packages.
2025-10-28T22:38:52,934           ********************************************************************************

2025-10-28T22:38:52,935   !!
2025-10-28T22:38:52,936     check.warn(importable)
2025-10-28T22:38:52,936   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' is absent from the `packages` configuration.
2025-10-28T22:38:52,936   !!

2025-10-28T22:38:52,937           ********************************************************************************
2025-10-28T22:38:52,938           ############################
2025-10-28T22:38:52,938           # Package would be ignored #
2025-10-28T22:38:52,939           ############################
2025-10-28T22:38:52,939           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' as an importable package[^1],
2025-10-28T22:38:52,940           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,941           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,941           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' is explicitly added
2025-10-28T22:38:52,942           to the `packages` configuration field.

2025-10-28T22:38:52,943           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,944           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,944           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,945           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,946           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,947           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' to be distributed and are
2025-10-28T22:38:52,947           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm10' via
2025-10-28T22:38:52,948           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,948           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,949           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,950           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,951           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,953           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,953                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,954                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,954                 directory, all directories are treated like packages.
2025-10-28T22:38:52,954           ********************************************************************************

2025-10-28T22:38:52,955   !!
2025-10-28T22:38:52,955     check.warn(importable)
2025-10-28T22:38:52,956   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' is absent from the `packages` configuration.
2025-10-28T22:38:52,956   !!

2025-10-28T22:38:52,957           ********************************************************************************
2025-10-28T22:38:52,957           ############################
2025-10-28T22:38:52,958           # Package would be ignored #
2025-10-28T22:38:52,958           ############################
2025-10-28T22:38:52,958           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' as an importable package[^1],
2025-10-28T22:38:52,959           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,960           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,960           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' is explicitly added
2025-10-28T22:38:52,960           to the `packages` configuration field.

2025-10-28T22:38:52,961           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,962           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,962           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,964           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,965           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,966           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' to be distributed and are
2025-10-28T22:38:52,967           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm39' via
2025-10-28T22:38:52,967           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,968           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,968           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,970           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,971           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,972           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,972                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,973                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,973                 directory, all directories are treated like packages.
2025-10-28T22:38:52,974           ********************************************************************************

2025-10-28T22:38:52,975   !!
2025-10-28T22:38:52,976     check.warn(importable)
2025-10-28T22:38:52,976   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' is absent from the `packages` configuration.
2025-10-28T22:38:52,977   !!

2025-10-28T22:38:52,978           ********************************************************************************
2025-10-28T22:38:52,978           ############################
2025-10-28T22:38:52,979           # Package would be ignored #
2025-10-28T22:38:52,980           ############################
2025-10-28T22:38:52,980           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' as an importable package[^1],
2025-10-28T22:38:52,981           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:52,981           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:52,982           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' is explicitly added
2025-10-28T22:38:52,982           to the `packages` configuration field.

2025-10-28T22:38:52,983           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:52,983           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:52,983           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:52,984           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:52,985           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:52,986           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' to be distributed and are
2025-10-28T22:38:52,986           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.mm9' via
2025-10-28T22:38:52,986           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:52,987           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:52,987           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:52,988           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:52,989           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:52,991           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:52,991                 even if it does not contain any `.py` files.
2025-10-28T22:38:52,992                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:52,993                 directory, all directories are treated like packages.
2025-10-28T22:38:52,993           ********************************************************************************

2025-10-28T22:38:52,994   !!
2025-10-28T22:38:52,995     check.warn(importable)
2025-10-28T22:38:52,995   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' is absent from the `packages` configuration.
2025-10-28T22:38:52,996   !!

2025-10-28T22:38:52,997           ********************************************************************************
2025-10-28T22:38:52,998           ############################
2025-10-28T22:38:52,998           # Package would be ignored #
2025-10-28T22:38:52,998           ############################
2025-10-28T22:38:52,999           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' as an importable package[^1],
2025-10-28T22:38:52,999           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,000           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,001           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' is explicitly added
2025-10-28T22:38:53,001           to the `packages` configuration field.

2025-10-28T22:38:53,002           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,003           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,003           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,005           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,006           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,007           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' to be distributed and are
2025-10-28T22:38:53,007           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn6' via
2025-10-28T22:38:53,007           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,008           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,008           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,009           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,010           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,011           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,011                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,011                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,012                 directory, all directories are treated like packages.
2025-10-28T22:38:53,012           ********************************************************************************

2025-10-28T22:38:53,013   !!
2025-10-28T22:38:53,013     check.warn(importable)
2025-10-28T22:38:53,014   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' is absent from the `packages` configuration.
2025-10-28T22:38:53,014   !!

2025-10-28T22:38:53,015           ********************************************************************************
2025-10-28T22:38:53,016           ############################
2025-10-28T22:38:53,016           # Package would be ignored #
2025-10-28T22:38:53,017           ############################
2025-10-28T22:38:53,017           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' as an importable package[^1],
2025-10-28T22:38:53,018           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,019           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,020           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' is explicitly added
2025-10-28T22:38:53,020           to the `packages` configuration field.

2025-10-28T22:38:53,021           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,022           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,023           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,023           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,024           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,025           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' to be distributed and are
2025-10-28T22:38:53,026           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.rn7' via
2025-10-28T22:38:53,026           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,027           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,027           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,029           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,030           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,031           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,032                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,033                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,033                 directory, all directories are treated like packages.
2025-10-28T22:38:53,034           ********************************************************************************

2025-10-28T22:38:53,038   !!
2025-10-28T22:38:53,038     check.warn(importable)
2025-10-28T22:38:53,039   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' is absent from the `packages` configuration.
2025-10-28T22:38:53,039   !!

2025-10-28T22:38:53,040           ********************************************************************************
2025-10-28T22:38:53,041           ############################
2025-10-28T22:38:53,041           # Package would be ignored #
2025-10-28T22:38:53,041           ############################
2025-10-28T22:38:53,042           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' as an importable package[^1],
2025-10-28T22:38:53,042           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,043           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,043           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' is explicitly added
2025-10-28T22:38:53,044           to the `packages` configuration field.

2025-10-28T22:38:53,045           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,045           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,045           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,046           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,047           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,049           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' to be distributed and are
2025-10-28T22:38:53,049           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.exome.yeast' via
2025-10-28T22:38:53,050           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,050           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,051           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,052           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,053           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,054           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,055                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,055                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,056                 directory, all directories are treated like packages.
2025-10-28T22:38:53,056           ********************************************************************************

2025-10-28T22:38:53,057   !!
2025-10-28T22:38:53,058     check.warn(importable)
2025-10-28T22:38:53,059   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' is absent from the `packages` configuration.
2025-10-28T22:38:53,059   !!

2025-10-28T22:38:53,060           ********************************************************************************
2025-10-28T22:38:53,061           ############################
2025-10-28T22:38:53,061           # Package would be ignored #
2025-10-28T22:38:53,062           ############################
2025-10-28T22:38:53,063           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' as an importable package[^1],
2025-10-28T22:38:53,063           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,064           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,064           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' is explicitly added
2025-10-28T22:38:53,065           to the `packages` configuration field.

2025-10-28T22:38:53,065           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,066           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,066           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,067           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,068           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,068           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' to be distributed and are
2025-10-28T22:38:53,069           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts' via
2025-10-28T22:38:53,069           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,070           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,070           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,071           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,072           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,073           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,074                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,074                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,075                 directory, all directories are treated like packages.
2025-10-28T22:38:53,075           ********************************************************************************

2025-10-28T22:38:53,076   !!
2025-10-28T22:38:53,077     check.warn(importable)
2025-10-28T22:38:53,077   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' is absent from the `packages` configuration.
2025-10-28T22:38:53,078   !!

2025-10-28T22:38:53,079           ********************************************************************************
2025-10-28T22:38:53,080           ############################
2025-10-28T22:38:53,080           # Package would be ignored #
2025-10-28T22:38:53,081           ############################
2025-10-28T22:38:53,081           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' as an importable package[^1],
2025-10-28T22:38:53,081           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,082           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,083           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' is explicitly added
2025-10-28T22:38:53,084           to the `packages` configuration field.

2025-10-28T22:38:53,085           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,085           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,086           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,087           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,088           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,089           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' to be distributed and are
2025-10-28T22:38:53,089           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh37' via
2025-10-28T22:38:53,090           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,090           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,090           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,091           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,092           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,093           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,093                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,094                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,094                 directory, all directories are treated like packages.
2025-10-28T22:38:53,095           ********************************************************************************

2025-10-28T22:38:53,095   !!
2025-10-28T22:38:53,096     check.warn(importable)
2025-10-28T22:38:53,096   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' is absent from the `packages` configuration.
2025-10-28T22:38:53,096   !!

2025-10-28T22:38:53,097           ********************************************************************************
2025-10-28T22:38:53,098           ############################
2025-10-28T22:38:53,098           # Package would be ignored #
2025-10-28T22:38:53,099           ############################
2025-10-28T22:38:53,100           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' as an importable package[^1],
2025-10-28T22:38:53,100           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,101           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,102           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' is explicitly added
2025-10-28T22:38:53,103           to the `packages` configuration field.

2025-10-28T22:38:53,104           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,104           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,105           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,106           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,107           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,108           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' to be distributed and are
2025-10-28T22:38:53,108           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.GRCh38' via
2025-10-28T22:38:53,109           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,109           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,110           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,111           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,112           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,115           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,115                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,115                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,116                 directory, all directories are treated like packages.
2025-10-28T22:38:53,116           ********************************************************************************

2025-10-28T22:38:53,117   !!
2025-10-28T22:38:53,117     check.warn(importable)
2025-10-28T22:38:53,118   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' is absent from the `packages` configuration.
2025-10-28T22:38:53,118   !!

2025-10-28T22:38:53,119           ********************************************************************************
2025-10-28T22:38:53,119           ############################
2025-10-28T22:38:53,120           # Package would be ignored #
2025-10-28T22:38:53,120           ############################
2025-10-28T22:38:53,120           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' as an importable package[^1],
2025-10-28T22:38:53,121           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,122           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,122           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' is explicitly added
2025-10-28T22:38:53,123           to the `packages` configuration field.

2025-10-28T22:38:53,124           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,124           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,125           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,127           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,128           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,130           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' to be distributed and are
2025-10-28T22:38:53,130           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.c_elegans' via
2025-10-28T22:38:53,131           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,132           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,132           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,134           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,135           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,137           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,137                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,138                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,139                 directory, all directories are treated like packages.
2025-10-28T22:38:53,139           ********************************************************************************

2025-10-28T22:38:53,141   !!
2025-10-28T22:38:53,141     check.warn(importable)
2025-10-28T22:38:53,142   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' is absent from the `packages` configuration.
2025-10-28T22:38:53,143   !!

2025-10-28T22:38:53,144           ********************************************************************************
2025-10-28T22:38:53,145           ############################
2025-10-28T22:38:53,146           # Package would be ignored #
2025-10-28T22:38:53,146           ############################
2025-10-28T22:38:53,147           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' as an importable package[^1],
2025-10-28T22:38:53,147           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,148           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,149           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' is explicitly added
2025-10-28T22:38:53,149           to the `packages` configuration field.

2025-10-28T22:38:53,150           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,151           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,151           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,152           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,153           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,154           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' to be distributed and are
2025-10-28T22:38:53,155           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.dog' via
2025-10-28T22:38:53,155           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,156           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,156           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,158           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,159           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,161           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,162                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,163                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,163                 directory, all directories are treated like packages.
2025-10-28T22:38:53,164           ********************************************************************************

2025-10-28T22:38:53,165   !!
2025-10-28T22:38:53,166     check.warn(importable)
2025-10-28T22:38:53,167   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' is absent from the `packages` configuration.
2025-10-28T22:38:53,168   !!

2025-10-28T22:38:53,169           ********************************************************************************
2025-10-28T22:38:53,169           ############################
2025-10-28T22:38:53,170           # Package would be ignored #
2025-10-28T22:38:53,171           ############################
2025-10-28T22:38:53,171           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' as an importable package[^1],
2025-10-28T22:38:53,172           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,173           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,174           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' is explicitly added
2025-10-28T22:38:53,174           to the `packages` configuration field.

2025-10-28T22:38:53,176           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,176           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,177           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,179           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,180           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,181           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' to be distributed and are
2025-10-28T22:38:53,181           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.ebv' via
2025-10-28T22:38:53,182           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,182           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,183           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,184           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,185           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,186           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,187                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,187                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,188                 directory, all directories are treated like packages.
2025-10-28T22:38:53,188           ********************************************************************************

2025-10-28T22:38:53,189   !!
2025-10-28T22:38:53,190     check.warn(importable)
2025-10-28T22:38:53,190   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' is absent from the `packages` configuration.
2025-10-28T22:38:53,191   !!

2025-10-28T22:38:53,192           ********************************************************************************
2025-10-28T22:38:53,193           ############################
2025-10-28T22:38:53,194           # Package would be ignored #
2025-10-28T22:38:53,194           ############################
2025-10-28T22:38:53,195           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' as an importable package[^1],
2025-10-28T22:38:53,196           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,197           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,198           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' is explicitly added
2025-10-28T22:38:53,199           to the `packages` configuration field.

2025-10-28T22:38:53,201           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,201           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,202           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,203           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,204           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,206           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' to be distributed and are
2025-10-28T22:38:53,206           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm10' via
2025-10-28T22:38:53,207           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,208           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,209           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,210           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,212           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,213           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,214                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,214                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,215                 directory, all directories are treated like packages.
2025-10-28T22:38:53,215           ********************************************************************************

2025-10-28T22:38:53,217   !!
2025-10-28T22:38:53,217     check.warn(importable)
2025-10-28T22:38:53,218   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' is absent from the `packages` configuration.
2025-10-28T22:38:53,218   !!

2025-10-28T22:38:53,219           ********************************************************************************
2025-10-28T22:38:53,220           ############################
2025-10-28T22:38:53,220           # Package would be ignored #
2025-10-28T22:38:53,221           ############################
2025-10-28T22:38:53,222           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' as an importable package[^1],
2025-10-28T22:38:53,222           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,223           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,224           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' is explicitly added
2025-10-28T22:38:53,224           to the `packages` configuration field.

2025-10-28T22:38:53,225           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,226           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,227           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,228           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,229           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,231           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' to be distributed and are
2025-10-28T22:38:53,232           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm39' via
2025-10-28T22:38:53,232           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,233           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,234           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,235           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,236           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,238           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,239                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,239                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,240                 directory, all directories are treated like packages.
2025-10-28T22:38:53,240           ********************************************************************************

2025-10-28T22:38:53,242   !!
2025-10-28T22:38:53,242     check.warn(importable)
2025-10-28T22:38:53,243   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' is absent from the `packages` configuration.
2025-10-28T22:38:53,244   !!

2025-10-28T22:38:53,245           ********************************************************************************
2025-10-28T22:38:53,246           ############################
2025-10-28T22:38:53,246           # Package would be ignored #
2025-10-28T22:38:53,247           ############################
2025-10-28T22:38:53,247           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' as an importable package[^1],
2025-10-28T22:38:53,248           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,249           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,249           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' is explicitly added
2025-10-28T22:38:53,250           to the `packages` configuration field.

2025-10-28T22:38:53,251           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,251           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,252           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,253           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,254           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,255           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' to be distributed and are
2025-10-28T22:38:53,256           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.mm9' via
2025-10-28T22:38:53,256           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,257           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,257           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,259           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,260           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,262           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,263                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,264                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,264                 directory, all directories are treated like packages.
2025-10-28T22:38:53,265           ********************************************************************************

2025-10-28T22:38:53,266   !!
2025-10-28T22:38:53,267     check.warn(importable)
2025-10-28T22:38:53,268   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' is absent from the `packages` configuration.
2025-10-28T22:38:53,269   !!

2025-10-28T22:38:53,270           ********************************************************************************
2025-10-28T22:38:53,270           ############################
2025-10-28T22:38:53,271           # Package would be ignored #
2025-10-28T22:38:53,272           ############################
2025-10-28T22:38:53,272           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' as an importable package[^1],
2025-10-28T22:38:53,273           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,274           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,275           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' is explicitly added
2025-10-28T22:38:53,276           to the `packages` configuration field.

2025-10-28T22:38:53,277           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,278           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,279           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,280           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,281           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,282           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' to be distributed and are
2025-10-28T22:38:53,283           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn6' via
2025-10-28T22:38:53,283           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,284           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,284           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,285           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,286           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,288           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,288                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,289                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,290                 directory, all directories are treated like packages.
2025-10-28T22:38:53,290           ********************************************************************************

2025-10-28T22:38:53,291   !!
2025-10-28T22:38:53,292     check.warn(importable)
2025-10-28T22:38:53,293   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' is absent from the `packages` configuration.
2025-10-28T22:38:53,293   !!

2025-10-28T22:38:53,295           ********************************************************************************
2025-10-28T22:38:53,295           ############################
2025-10-28T22:38:53,296           # Package would be ignored #
2025-10-28T22:38:53,297           ############################
2025-10-28T22:38:53,297           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' as an importable package[^1],
2025-10-28T22:38:53,298           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,299           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,300           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' is explicitly added
2025-10-28T22:38:53,301           to the `packages` configuration field.

2025-10-28T22:38:53,302           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,302           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,303           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,304           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,305           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,307           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' to be distributed and are
2025-10-28T22:38:53,307           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.rn7' via
2025-10-28T22:38:53,308           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,309           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,309           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,311           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,312           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,314           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,314                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,315                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,316                 directory, all directories are treated like packages.
2025-10-28T22:38:53,316           ********************************************************************************

2025-10-28T22:38:53,317   !!
2025-10-28T22:38:53,318     check.warn(importable)
2025-10-28T22:38:53,321   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' is absent from the `packages` configuration.
2025-10-28T22:38:53,322   !!

2025-10-28T22:38:53,329           ********************************************************************************
2025-10-28T22:38:53,332           ############################
2025-10-28T22:38:53,332           # Package would be ignored #
2025-10-28T22:38:53,333           ############################
2025-10-28T22:38:53,334           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' as an importable package[^1],
2025-10-28T22:38:53,335           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,342           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,343           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' is explicitly added
2025-10-28T22:38:53,344           to the `packages` configuration field.

2025-10-28T22:38:53,349           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,350           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,351           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,355           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,356           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,357           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' to be distributed and are
2025-10-28T22:38:53,358           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.transcripts.yeast' via
2025-10-28T22:38:53,359           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,360           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,361           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,365           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,369           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,373           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,374                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,375                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,376                 directory, all directories are treated like packages.
2025-10-28T22:38:53,377           ********************************************************************************

2025-10-28T22:38:53,378   !!
2025-10-28T22:38:53,379     check.warn(importable)
2025-10-28T22:38:53,380   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' is absent from the `packages` configuration.
2025-10-28T22:38:53,380   !!

2025-10-28T22:38:53,381           ********************************************************************************
2025-10-28T22:38:53,382           ############################
2025-10-28T22:38:53,382           # Package would be ignored #
2025-10-28T22:38:53,383           ############################
2025-10-28T22:38:53,383           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' as an importable package[^1],
2025-10-28T22:38:53,384           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,385           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,385           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' is explicitly added
2025-10-28T22:38:53,386           to the `packages` configuration field.

2025-10-28T22:38:53,386           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,387           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,387           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,388           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,389           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,390           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' to be distributed and are
2025-10-28T22:38:53,391           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED' via
2025-10-28T22:38:53,391           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,392           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,392           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,393           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,394           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,395           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,396                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,396                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,397                 directory, all directories are treated like packages.
2025-10-28T22:38:53,398           ********************************************************************************

2025-10-28T22:38:53,399   !!
2025-10-28T22:38:53,399     check.warn(importable)
2025-10-28T22:38:53,400   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' is absent from the `packages` configuration.
2025-10-28T22:38:53,400   !!

2025-10-28T22:38:53,401           ********************************************************************************
2025-10-28T22:38:53,402           ############################
2025-10-28T22:38:53,402           # Package would be ignored #
2025-10-28T22:38:53,403           ############################
2025-10-28T22:38:53,403           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' as an importable package[^1],
2025-10-28T22:38:53,404           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,405           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,405           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' is explicitly added
2025-10-28T22:38:53,406           to the `packages` configuration field.

2025-10-28T22:38:53,407           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,408           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,409           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,409           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,410           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,412           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' to be distributed and are
2025-10-28T22:38:53,412           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh37' via
2025-10-28T22:38:53,413           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,413           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,414           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,415           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,416           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,418           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,419                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,419                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,420                 directory, all directories are treated like packages.
2025-10-28T22:38:53,420           ********************************************************************************

2025-10-28T22:38:53,421   !!
2025-10-28T22:38:53,422     check.warn(importable)
2025-10-28T22:38:53,423   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' is absent from the `packages` configuration.
2025-10-28T22:38:53,423   !!

2025-10-28T22:38:53,424           ********************************************************************************
2025-10-28T22:38:53,425           ############################
2025-10-28T22:38:53,426           # Package would be ignored #
2025-10-28T22:38:53,426           ############################
2025-10-28T22:38:53,427           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' as an importable package[^1],
2025-10-28T22:38:53,427           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,429           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,429           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' is explicitly added
2025-10-28T22:38:53,430           to the `packages` configuration field.

2025-10-28T22:38:53,431           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,432           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,432           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,434           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,436           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,438           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' to be distributed and are
2025-10-28T22:38:53,438           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.GRCh38' via
2025-10-28T22:38:53,439           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,440           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,441           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,443           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,444           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,447           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,447                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,447                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,448                 directory, all directories are treated like packages.
2025-10-28T22:38:53,448           ********************************************************************************

2025-10-28T22:38:53,449   !!
2025-10-28T22:38:53,450     check.warn(importable)
2025-10-28T22:38:53,451   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' is absent from the `packages` configuration.
2025-10-28T22:38:53,451   !!

2025-10-28T22:38:53,453           ********************************************************************************
2025-10-28T22:38:53,454           ############################
2025-10-28T22:38:53,455           # Package would be ignored #
2025-10-28T22:38:53,455           ############################
2025-10-28T22:38:53,456           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' as an importable package[^1],
2025-10-28T22:38:53,456           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,457           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,458           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' is explicitly added
2025-10-28T22:38:53,459           to the `packages` configuration field.

2025-10-28T22:38:53,460           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,460           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,461           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,462           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,464           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,465           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' to be distributed and are
2025-10-28T22:38:53,466           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.c_elegans' via
2025-10-28T22:38:53,466           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,467           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,468           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,469           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,470           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,472           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,472                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,473                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,474                 directory, all directories are treated like packages.
2025-10-28T22:38:53,474           ********************************************************************************

2025-10-28T22:38:53,476   !!
2025-10-28T22:38:53,476     check.warn(importable)
2025-10-28T22:38:53,477   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' is absent from the `packages` configuration.
2025-10-28T22:38:53,477   !!

2025-10-28T22:38:53,479           ********************************************************************************
2025-10-28T22:38:53,479           ############################
2025-10-28T22:38:53,480           # Package would be ignored #
2025-10-28T22:38:53,480           ############################
2025-10-28T22:38:53,481           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' as an importable package[^1],
2025-10-28T22:38:53,482           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,483           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,483           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' is explicitly added
2025-10-28T22:38:53,484           to the `packages` configuration field.

2025-10-28T22:38:53,485           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,486           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,486           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,487           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,488           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,489           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' to be distributed and are
2025-10-28T22:38:53,490           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.dog' via
2025-10-28T22:38:53,490           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,491           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,491           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,492           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,493           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,495           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,495                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,496                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,496                 directory, all directories are treated like packages.
2025-10-28T22:38:53,497           ********************************************************************************

2025-10-28T22:38:53,498   !!
2025-10-28T22:38:53,498     check.warn(importable)
2025-10-28T22:38:53,499   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' is absent from the `packages` configuration.
2025-10-28T22:38:53,499   !!

2025-10-28T22:38:53,501           ********************************************************************************
2025-10-28T22:38:53,501           ############################
2025-10-28T22:38:53,502           # Package would be ignored #
2025-10-28T22:38:53,502           ############################
2025-10-28T22:38:53,503           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' as an importable package[^1],
2025-10-28T22:38:53,503           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,504           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,505           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' is explicitly added
2025-10-28T22:38:53,505           to the `packages` configuration field.

2025-10-28T22:38:53,507           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,507           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,508           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,508           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,509           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,510           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' to be distributed and are
2025-10-28T22:38:53,511           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm10' via
2025-10-28T22:38:53,511           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,512           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,512           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,513           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,514           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,515           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,516                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,516                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,517                 directory, all directories are treated like packages.
2025-10-28T22:38:53,517           ********************************************************************************

2025-10-28T22:38:53,518   !!
2025-10-28T22:38:53,519     check.warn(importable)
2025-10-28T22:38:53,519   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' is absent from the `packages` configuration.
2025-10-28T22:38:53,520   !!

2025-10-28T22:38:53,521           ********************************************************************************
2025-10-28T22:38:53,521           ############################
2025-10-28T22:38:53,522           # Package would be ignored #
2025-10-28T22:38:53,522           ############################
2025-10-28T22:38:53,523           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' as an importable package[^1],
2025-10-28T22:38:53,524           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,524           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,525           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' is explicitly added
2025-10-28T22:38:53,526           to the `packages` configuration field.

2025-10-28T22:38:53,527           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,528           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,528           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,529           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,530           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,531           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' to be distributed and are
2025-10-28T22:38:53,532           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm39' via
2025-10-28T22:38:53,532           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,533           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,533           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,534           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,535           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,537           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,537                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,537                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,538                 directory, all directories are treated like packages.
2025-10-28T22:38:53,538           ********************************************************************************

2025-10-28T22:38:53,539   !!
2025-10-28T22:38:53,540     check.warn(importable)
2025-10-28T22:38:53,540   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' is absent from the `packages` configuration.
2025-10-28T22:38:53,541   !!

2025-10-28T22:38:53,541           ********************************************************************************
2025-10-28T22:38:53,542           ############################
2025-10-28T22:38:53,542           # Package would be ignored #
2025-10-28T22:38:53,543           ############################
2025-10-28T22:38:53,543           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' as an importable package[^1],
2025-10-28T22:38:53,544           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,545           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,545           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' is explicitly added
2025-10-28T22:38:53,546           to the `packages` configuration field.

2025-10-28T22:38:53,547           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,547           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,548           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,549           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,550           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,551           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' to be distributed and are
2025-10-28T22:38:53,551           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.mm9' via
2025-10-28T22:38:53,552           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,552           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,553           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,554           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,555           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,556           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,557                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,558                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,558                 directory, all directories are treated like packages.
2025-10-28T22:38:53,559           ********************************************************************************

2025-10-28T22:38:53,560   !!
2025-10-28T22:38:53,560     check.warn(importable)
2025-10-28T22:38:53,561   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' is absent from the `packages` configuration.
2025-10-28T22:38:53,562   !!

2025-10-28T22:38:53,563           ********************************************************************************
2025-10-28T22:38:53,563           ############################
2025-10-28T22:38:53,564           # Package would be ignored #
2025-10-28T22:38:53,564           ############################
2025-10-28T22:38:53,564           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' as an importable package[^1],
2025-10-28T22:38:53,565           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,566           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,566           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' is explicitly added
2025-10-28T22:38:53,567           to the `packages` configuration field.

2025-10-28T22:38:53,568           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,568           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,569           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,570           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,571           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,572           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' to be distributed and are
2025-10-28T22:38:53,572           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn6' via
2025-10-28T22:38:53,573           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,573           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,574           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,575           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,575           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,577           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,577                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,578                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,578                 directory, all directories are treated like packages.
2025-10-28T22:38:53,579           ********************************************************************************

2025-10-28T22:38:53,580   !!
2025-10-28T22:38:53,580     check.warn(importable)
2025-10-28T22:38:53,581   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' is absent from the `packages` configuration.
2025-10-28T22:38:53,582   !!

2025-10-28T22:38:53,583           ********************************************************************************
2025-10-28T22:38:53,583           ############################
2025-10-28T22:38:53,584           # Package would be ignored #
2025-10-28T22:38:53,584           ############################
2025-10-28T22:38:53,585           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' as an importable package[^1],
2025-10-28T22:38:53,585           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,586           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,587           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' is explicitly added
2025-10-28T22:38:53,588           to the `packages` configuration field.

2025-10-28T22:38:53,589           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,590           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,590           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,591           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,592           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,593           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' to be distributed and are
2025-10-28T22:38:53,594           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.rn7' via
2025-10-28T22:38:53,594           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,594           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,595           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,596           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,597           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,598           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,599                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,599                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,600                 directory, all directories are treated like packages.
2025-10-28T22:38:53,600           ********************************************************************************

2025-10-28T22:38:53,602   !!
2025-10-28T22:38:53,602     check.warn(importable)
2025-10-28T22:38:53,603   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' is absent from the `packages` configuration.
2025-10-28T22:38:53,603   !!

2025-10-28T22:38:53,604           ********************************************************************************
2025-10-28T22:38:53,605           ############################
2025-10-28T22:38:53,605           # Package would be ignored #
2025-10-28T22:38:53,606           ############################
2025-10-28T22:38:53,606           Python recognizes 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' as an importable package[^1],
2025-10-28T22:38:53,607           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,608           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,609           package, please make sure that 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' is explicitly added
2025-10-28T22:38:53,609           to the `packages` configuration field.

2025-10-28T22:38:53,610           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,611           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,611           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,612           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,613           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,614           If you don't want 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' to be distributed and are
2025-10-28T22:38:53,615           already explicitly excluding 'SigProfilerMatrixGenerator.references.chromosomes.tsb_BED.yeast' via
2025-10-28T22:38:53,615           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,616           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,617           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,618           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,619           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,620           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,621                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,621                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,622                 directory, all directories are treated like packages.
2025-10-28T22:38:53,623           ********************************************************************************

2025-10-28T22:38:53,624   !!
2025-10-28T22:38:53,624     check.warn(importable)
2025-10-28T22:38:53,624   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.scripts' is absent from the `packages` configuration.
2025-10-28T22:38:53,625   !!

2025-10-28T22:38:53,626           ********************************************************************************
2025-10-28T22:38:53,626           ############################
2025-10-28T22:38:53,627           # Package would be ignored #
2025-10-28T22:38:53,627           ############################
2025-10-28T22:38:53,628           Python recognizes 'SigProfilerMatrixGenerator.scripts' as an importable package[^1],
2025-10-28T22:38:53,628           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,629           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,629           package, please make sure that 'SigProfilerMatrixGenerator.scripts' is explicitly added
2025-10-28T22:38:53,630           to the `packages` configuration field.

2025-10-28T22:38:53,631           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,632           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,632           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,633           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,634           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,635           If you don't want 'SigProfilerMatrixGenerator.scripts' to be distributed and are
2025-10-28T22:38:53,636           already explicitly excluding 'SigProfilerMatrixGenerator.scripts' via
2025-10-28T22:38:53,636           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,637           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,637           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,639           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,640           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,641           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,642                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,642                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,643                 directory, all directories are treated like packages.
2025-10-28T22:38:53,644           ********************************************************************************

2025-10-28T22:38:53,645   !!
2025-10-28T22:38:53,645     check.warn(importable)
2025-10-28T22:38:53,646   /tmp/pip-build-env-6cipbmmn/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerMatrixGenerator.scripts.Benchmark' is absent from the `packages` configuration.
2025-10-28T22:38:53,646   !!

2025-10-28T22:38:53,648           ********************************************************************************
2025-10-28T22:38:53,648           ############################
2025-10-28T22:38:53,649           # Package would be ignored #
2025-10-28T22:38:53,649           ############################
2025-10-28T22:38:53,650           Python recognizes 'SigProfilerMatrixGenerator.scripts.Benchmark' as an importable package[^1],
2025-10-28T22:38:53,650           but it is absent from setuptools' `packages` configuration.

2025-10-28T22:38:53,651           This leads to an ambiguous overall configuration. If you want to distribute this
2025-10-28T22:38:53,651           package, please make sure that 'SigProfilerMatrixGenerator.scripts.Benchmark' is explicitly added
2025-10-28T22:38:53,652           to the `packages` configuration field.

2025-10-28T22:38:53,654           Alternatively, you can also rely on setuptools' discovery methods
2025-10-28T22:38:53,655           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-10-28T22:38:53,656           instead of `find_packages(...)`/`find:`).

2025-10-28T22:38:53,658           You can read more about "package discovery" on setuptools documentation page:

2025-10-28T22:38:53,660           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-10-28T22:38:53,662           If you don't want 'SigProfilerMatrixGenerator.scripts.Benchmark' to be distributed and are
2025-10-28T22:38:53,663           already explicitly excluding 'SigProfilerMatrixGenerator.scripts.Benchmark' via
2025-10-28T22:38:53,663           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-10-28T22:38:53,664           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-10-28T22:38:53,664           combination with a more fine grained `package-data` configuration.

2025-10-28T22:38:53,665           You can read more about "package data files" on setuptools documentation page:

2025-10-28T22:38:53,666           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-10-28T22:38:53,668           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-10-28T22:38:53,669                 even if it does not contain any `.py` files.
2025-10-28T22:38:53,669                 On the other hand, currently there is no concept of package data
2025-10-28T22:38:53,670                 directory, all directories are treated like packages.
2025-10-28T22:38:53,670           ********************************************************************************

2025-10-28T22:38:53,672   !!
2025-10-28T22:38:53,672     check.warn(importable)
2025-10-28T22:38:53,673   creating build/lib/SigProfilerMatrixGenerator/controllers
2025-10-28T22:38:53,673   copying SigProfilerMatrixGenerator/controllers/__init__.py -> build/lib/SigProfilerMatrixGenerator/controllers
2025-10-28T22:38:53,674   copying SigProfilerMatrixGenerator/controllers/cli_controller.py -> build/lib/SigProfilerMatrixGenerator/controllers
2025-10-28T22:38:53,674   creating build/lib/SigProfilerMatrixGenerator/references/CNV
2025-10-28T22:38:53,675   copying SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV
2025-10-28T22:38:53,675   copying SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt -> build/lib/SigProfilerMatrixGenerator/references/CNV
2025-10-28T22:38:53,676   creating build/lib/SigProfilerMatrixGenerator/references/CNV/example_input
2025-10-28T22:38:53,676   copying SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_input
2025-10-28T22:38:53,677   copying SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_input
2025-10-28T22:38:53,677   creating build/lib/SigProfilerMatrixGenerator/references/CNV/example_output
2025-10-28T22:38:53,678   copying SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv -> build/lib/SigProfilerMatrixGenerator/references/CNV/example_output
2025-10-28T22:38:53,678   creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,679   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,679   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,680   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,680   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,681   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,681   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,682   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,682   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,683   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,684   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,684   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,685   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,686   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,686   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,687   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,687   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,688   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,689   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,690   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,691   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,691   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,692   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,693   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,693   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,694   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,694   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,695   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,695   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,696   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,697   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,699   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,700   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,702   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,702   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,703   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,704   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,706   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,707   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,707   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,708   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,708   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,709   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,710   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,710   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,711   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,711   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,712   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,712   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,713   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,714   copying SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:38:53,714   creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,715   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,715   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,716   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,716   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,717   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,718   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,718   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,719   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,719   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,720   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,720   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,720   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,721   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,721   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,722   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,722   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,723   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,723   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,724   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,725   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,725   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,726   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,726   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,727   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,727   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,728   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,728   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,729   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,730   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,730   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,731   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,732   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,732   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,732   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,733   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,734   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,734   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,735   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,735   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,736   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,737   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,737   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,738   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,739   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,739   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,740   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,740   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,741   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,741   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,742   copying SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:38:53,742   creating build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:38:53,743   copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:38:53,751   copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:38:53,754   copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:38:53,858   copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:38:53,860   copying SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf -> build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:38:53,863   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,864   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,868   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,872   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,874   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,877   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,880   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,883   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,885   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,901   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,907   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,909   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,912   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,914   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,917   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,919   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,921   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,924   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,929   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,933   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,936   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,938   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,941   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,944   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,947   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,958   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,965   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,967   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,969   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,972   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,974   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,977   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,979   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,982   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,985   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,989   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,991   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,993   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,995   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:53,998   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,000   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,009   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,019   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,021   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,024   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,026   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,029   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,032   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,035   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,038   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,050   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,056   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,059   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,061   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,065   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,069   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,071   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,085   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,095   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,098   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,101   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,104   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,107   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,110   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,113   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,116   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,120   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,126   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,128   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,131   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,133   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,136   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,138   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,151   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,159   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,161   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,163   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,166   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,168   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,170   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,173   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,175   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,179   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,182   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,184   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,186   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,189   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,192   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,195   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,201   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,207   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,209   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,212   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,214   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,216   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,219   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,223   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,226   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,228   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,231   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,233   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,236   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,239   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,245   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,251   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,253   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,255   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,258   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,260   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,262   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,264   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,266   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,270   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,272   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,274   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,277   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,279   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,284   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,286   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,288   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,290   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,295   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,300   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,307   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,313   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,316   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,318   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,320   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,322   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,325   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,328   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,332   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,335   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,351   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,362   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,380   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,399   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,402   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,404   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,407   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,409   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,412   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,414   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,418   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,421   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,423   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,426   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,429   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,432   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,435   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,437   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,439   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,442   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,445   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,450   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,456   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,464   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,473   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,475   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,478   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,480   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,483   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,486   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,490   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,494   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,497   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,513   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,525   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,545   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,571   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,574   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,576   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,579   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,581   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,584   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,587   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,590   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,593   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,596   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,599   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,601   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,604   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,606   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,609   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,612   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,615   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,620   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,624   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,630   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,636   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,639   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,641   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,644   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,646   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,649   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,653   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,657   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,660   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,674   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,688   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,704   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,720   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,722   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,725   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,727   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,729   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,732   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,734   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,738   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,740   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,743   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,746   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,749   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,751   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,753   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,755   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,758   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,764   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,769   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,777   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,785   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,787   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,790   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,793   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,795   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,799   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,803   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,808   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,812   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,832   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,858   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,880   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,903   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,905   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,908   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,911   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,914   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,917   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,921   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,924   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,928   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,932   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,935   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,938   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,941   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,943   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,946   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,949   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,952   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,958   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,964   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,974   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,982   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,984   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,987   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,989   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,991   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,994   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:54,997   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,001   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,004   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,017   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,026   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,043   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,063   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,065   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,068   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,070   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,073   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,076   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,080   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,083   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,086   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,089   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,093   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,096   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,100   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,102   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,105   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,108   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,111   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,116   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,121   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,127   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,133   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,135   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,138   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,141   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,143   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,147   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,151   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,155   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,159   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,174   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,189   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,202   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,214   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,217   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,219   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,221   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,224   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,227   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,229   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,232   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,235   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,241   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,248   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,255   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,261   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,263   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,265   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,268   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,271   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,275   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,279   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,284   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,288   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,304   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,321   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,338   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,357   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,360   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,363   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,365   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,368   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,371   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,374   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,378   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,381   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,385   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,388   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,391   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,394   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,397   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,400   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,403   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,406   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,410   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,416   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,419   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,422   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,425   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,439   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,441   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,444   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,447   copying SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:38:55,449   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome
2025-10-28T22:38:55,450   copying SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome
2025-10-28T22:38:55,452   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37
2025-10-28T22:38:55,453   copying SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37
2025-10-28T22:38:55,731   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38
2025-10-28T22:38:55,733   copying SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38
2025-10-28T22:38:55,817   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans
2025-10-28T22:38:55,819   copying SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans
2025-10-28T22:38:56,022   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog
2025-10-28T22:38:56,023   copying SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog
2025-10-28T22:38:56,092   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:38:56,092   copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:38:56,095   copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:38:56,098   copying SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:38:56,101   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10
2025-10-28T22:38:56,101   copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10
2025-10-28T22:38:56,171   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39
2025-10-28T22:38:56,172   copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39
2025-10-28T22:38:56,248   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9
2025-10-28T22:38:56,249   copying SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9
2025-10-28T22:38:56,325   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6
2025-10-28T22:38:56,326   copying SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6
2025-10-28T22:38:56,662   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7
2025-10-28T22:38:56,663   copying SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7
2025-10-28T22:38:56,763   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast
2025-10-28T22:38:56,764   copying SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast
2025-10-28T22:38:56,769   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts
2025-10-28T22:38:56,770   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts
2025-10-28T22:38:56,772   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,773   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,779   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,789   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,797   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,801   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,808   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,814   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,824   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,836   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,841   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,855   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,870   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,875   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,879   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,884   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,893   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,901   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,908   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,914   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,923   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,932   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,938   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,945   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,948   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,955   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:56,959   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:56,960   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:56,968   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:56,981   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:56,992   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:56,997   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,005   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,013   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,023   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,033   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,037   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,047   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,059   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,066   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,070   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,074   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,084   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,092   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,098   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,105   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,113   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,125   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,131   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,137   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,139   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,149   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:38:57,152   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,153   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,162   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,170   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,180   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,188   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,191   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,206   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:38:57,216   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,217   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,222   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,226   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,230   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,233   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,236   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,240   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,243   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,248   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,252   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,255   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,259   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,263   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,266   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,269   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,272   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,276   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,279   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,282   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,286   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,289   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,292   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,296   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,300   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,303   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,306   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,309   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,312   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,315   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,318   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,321   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,323   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,327   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,330   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,334   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,338   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,342   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,345   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,350   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:57,354   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv
2025-10-28T22:38:57,355   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv
2025-10-28T22:38:57,357   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,358   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,365   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,373   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,378   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,384   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,390   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,395   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,399   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,405   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,409   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,414   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,424   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,433   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,439   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,446   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,454   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,461   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,472   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,479   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,487   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,490   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,495   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:38:57,498   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,499   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,505   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,518   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,523   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,528   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,534   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,539   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,545   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,551   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,556   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,562   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,571   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,581   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,588   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,597   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,607   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,615   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,629   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,636   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,646   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,653   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:57,656   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,657   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,667   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,679   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,685   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,690   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,696   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,702   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,708   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,715   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,720   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,725   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,732   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,746   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,754   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,769   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,781   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,789   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,800   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,807   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,816   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,818   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,825   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:57,827   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,828   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,834   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,838   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,842   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,846   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,850   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,854   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,859   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,863   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,868   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,872   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,882   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,888   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,895   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,902   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,908   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,914   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,920   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,926   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,932   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,939   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,942   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,949   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:38:57,952   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,954   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,963   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,968   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,973   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,977   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,982   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,988   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,993   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:57,998   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,003   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,008   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,019   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,024   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,032   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,040   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,048   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,056   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,062   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,068   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,074   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,080   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,083   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,090   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:38:58,093   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,094   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,098   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,102   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,106   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,109   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,112   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,115   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,118   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,122   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,125   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,129   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,132   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,136   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,140   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,144   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,147   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,151   copying SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:38:58,155   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED
2025-10-28T22:38:58,156   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED
2025-10-28T22:38:58,159   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,160   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,164   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,168   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,172   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,175   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,179   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,182   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,186   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,190   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,193   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,196   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,201   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,205   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,208   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,212   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,217   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,221   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,225   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,228   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,232   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,235   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,238   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,241   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,244   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:38:58,247   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,248   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,251   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,255   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,259   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,262   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,266   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,269   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,273   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,277   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,280   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,284   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,288   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,291   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,294   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,298   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,302   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,306   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,309   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,313   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,317   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,321   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,325   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,328   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,332   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:38:58,335   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,336   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,342   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,348   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,354   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,360   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,362   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,368   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:38:58,372   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,373   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,377   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,380   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,383   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,386   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,389   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,392   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,395   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,398   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,402   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,405   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,409   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,412   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,415   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,418   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,422   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,425   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,428   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,431   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,435   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,438   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,441   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,444   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,447   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,450   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,453   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,456   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,459   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,462   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,465   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,468   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,470   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,473   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,477   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,480   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,484   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,487   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,490   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,494   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:38:58,498   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,499   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,503   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,507   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,511   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,514   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,518   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,522   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,525   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,529   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,532   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,536   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,540   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,544   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,548   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,552   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,556   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,561   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,565   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,569   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,573   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,576   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:38:58,579   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,580   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,584   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,588   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,592   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,595   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,599   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,603   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,606   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,610   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,613   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,617   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,620   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,625   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,628   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,633   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,636   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,640   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,645   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,648   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,652   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,655   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:38:58,658   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,659   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,662   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,668   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,673   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,677   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,682   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,686   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,691   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,696   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,700   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,705   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,710   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,716   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,720   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,725   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,730   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,735   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,741   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,746   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,751   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,754   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:38:58,757   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,758   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,763   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,766   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,770   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,773   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,776   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,779   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,782   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,785   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,788   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,791   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,796   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,800   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,804   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,810   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,814   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,818   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,822   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,827   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,831   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,835   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,838   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,841   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:38:58,844   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,845   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,853   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,857   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,861   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,865   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,869   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,873   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,877   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,881   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,886   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,890   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,900   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,904   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,909   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,917   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,922   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,926   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,931   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,936   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,941   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,945   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,948   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,952   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:38:58,955   creating build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,956   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,960   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,963   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,968   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,971   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,974   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,978   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,982   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,985   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,989   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,993   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:58,996   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:59,000   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:59,004   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:59,007   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:59,011   copying SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt -> build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:38:59,014   creating build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,016   copying SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,020   copying SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,027   copying SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,031   copying SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,036   copying SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,039   copying SigProfilerMatrixGenerator/scripts/__init__.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,041   copying SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,045   copying SigProfilerMatrixGenerator/scripts/ref_install.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,048   copying SigProfilerMatrixGenerator/scripts/reference_genome_manager.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,051   copying SigProfilerMatrixGenerator/scripts/save_chrom_strings.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,054   copying SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,057   copying SigProfilerMatrixGenerator/scripts/save_context_distribution.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,061   copying SigProfilerMatrixGenerator/scripts/save_tsb_192.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,064   copying SigProfilerMatrixGenerator/scripts/vcfToBedpe.py -> build/lib/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,067   creating build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,069   copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,074   copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,077   copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,082   copying SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,085   copying SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,087   copying SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,092   copying SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,095   copying SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,100   copying SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt -> build/lib/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,120   installing to build/bdist.linux-armv7l/wheel
2025-10-28T22:38:59,120   running install
2025-10-28T22:38:59,143   running install_lib
2025-10-28T22:38:59,153   creating build/bdist.linux-armv7l/wheel
2025-10-28T22:38:59,156   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator
2025-10-28T22:38:59,157   copying build/lib/SigProfilerMatrixGenerator/version.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator
2025-10-28T22:38:59,159   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,160   copying build/lib/SigProfilerMatrixGenerator/scripts/save_tsb_192.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,163   copying build/lib/SigProfilerMatrixGenerator/scripts/ref_install.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,165   copying build/lib/SigProfilerMatrixGenerator/scripts/reference_genome_manager.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,168   copying build/lib/SigProfilerMatrixGenerator/scripts/save_chrom_strings.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,170   copying build/lib/SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,175   copying build/lib/SigProfilerMatrixGenerator/scripts/save_context_distribution.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,178   copying build/lib/SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,182   copying build/lib/SigProfilerMatrixGenerator/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,183   copying build/lib/SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,186   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,187   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,189   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,191   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,192   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,197   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,198   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,202   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,207   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,209   copying build/lib/SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts/Benchmark
2025-10-28T22:38:59,213   copying build/lib/SigProfilerMatrixGenerator/scripts/vcfToBedpe.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,215   copying build/lib/SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,218   copying build/lib/SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,221   copying build/lib/SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,225   copying build/lib/SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/scripts
2025-10-28T22:38:59,227   copying build/lib/SigProfilerMatrixGenerator/install.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator
2025-10-28T22:38:59,231   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references
2025-10-28T22:38:59,232   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes
2025-10-28T22:38:59,234   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts
2025-10-28T22:38:59,237   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,238   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,241   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,244   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,247   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,250   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,254   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,257   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,260   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,263   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,266   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,270   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,273   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,275   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,279   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,282   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,287   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,290   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,295   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,298   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,301   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,305   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,308   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,312   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,315   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,318   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,323   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,327   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,331   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,334   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,337   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,340   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,344   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,349   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,352   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,355   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,358   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,361   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,366   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,368   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog
2025-10-28T22:38:59,373   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,374   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,380   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,387   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,398   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,403   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,411   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,423   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,433   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,440   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,447   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,461   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,482   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,484   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,492   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,494   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,502   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,511   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,521   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,529   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,539   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,547   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,552   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9
2025-10-28T22:38:59,576   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,577   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,588   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,609   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,629   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,645   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,667   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,675   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,682   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,685   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,691   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,699   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,709   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,711   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,724   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,727   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,729   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,734   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,741   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,749   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,754   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,759   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,766   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,784   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,801   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,805   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37
2025-10-28T22:38:59,812   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,813   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,820   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,826   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,837   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,843   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,853   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,873   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,880   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,886   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,896   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,954   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,965   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,968   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,972   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,978   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,984   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:38:59,995   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:39:00,002   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:39:00,011   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:39:00,019   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:39:00,024   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39
2025-10-28T22:39:00,035   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts
2025-10-28T22:39:00,037   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,039   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,041   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,059   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,070   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,077   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,093   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,102   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans
2025-10-28T22:39:00,114   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,116   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,126   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,131   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,141   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,147   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,158   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,173   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,184   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,191   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,201   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,209   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,227   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,230   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,236   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,238   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,244   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,253   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,263   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,271   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,280   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,286   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,290   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10
2025-10-28T22:39:00,297   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,298   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,302   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,307   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,310   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,314   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,318   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,322   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,327   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,330   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,334   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,339   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,347   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,349   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,354   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,356   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,362   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,367   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,375   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,384   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,390   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,402   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,405   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,408   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6
2025-10-28T22:39:00,413   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,414   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,420   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,430   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,438   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,446   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,454   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,461   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,467   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,471   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,476   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,483   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,493   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,495   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,503   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,506   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,508   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,513   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,519   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,525   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,531   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,535   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,540   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,551   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,560   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,564   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38
2025-10-28T22:39:00,572   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,573   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,576   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,580   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,583   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,586   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,589   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,592   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,595   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,597   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,600   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,602   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,605   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,608   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,611   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,612   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,615   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,618   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast
2025-10-28T22:39:00,621   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,622   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,627   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,634   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,639   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,644   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,650   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,658   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,667   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,672   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,678   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,687   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,697   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,699   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,703   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,705   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,709   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,714   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,721   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,730   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,735   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,750   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,755   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,758   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7
2025-10-28T22:39:00,764   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv
2025-10-28T22:39:00,765   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv
2025-10-28T22:39:00,775   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,776   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,778   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,780   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,782   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,784   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,788   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,790   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,792   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,794   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,797   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,800   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,802   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,804   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,818   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,821   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,823   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,826   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,829   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,831   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,833   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,835   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,840   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,841   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,843   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,845   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,852   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,854   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,856   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,858   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,861   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,863   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,864   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,866   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,868   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,875   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,876   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,879   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,880   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,885   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,886   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,888   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,894   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,910   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,912   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,918   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,931   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,933   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,935   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,938   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,941   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,944   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,947   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,949   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,951   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,953   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,955   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,957   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,960   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,964   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,967   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,969   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,971   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,973   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,976   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,978   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,980   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,984   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,986   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,988   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:00,995   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,001   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,004   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,007   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,009   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,019   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,022   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,040   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,042   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,045   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,048   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,050   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,053   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,056   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,059   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,064   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,075   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,078   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,080   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,083   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,085   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,088   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,093   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,095   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,099   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,102   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,105   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,126   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,129   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,131   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,137   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,142   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,145   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,173   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,176   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,179   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,183   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,200   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,204   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,206   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,208   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,209   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,211   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,213   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,218   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,220   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,221   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,224   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,225   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,227   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,229   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,231   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,234   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,236   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,239   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,241   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,244   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,249   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,251   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,254   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,256   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,258   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,260   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,262   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,263   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,265   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,272   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,276   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,281   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,284   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,286   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,289   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,291   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,293   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,296   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,298   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,300   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,302   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,305   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,308   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,310   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,312   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,314   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,317   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,321   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,323   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,329   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,331   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,333   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,339   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,342   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,349   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,367   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,370   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,377   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,379   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,382   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,384   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,386   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,388   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,399   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,408   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,410   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,425   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,439   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,441   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,444   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,452   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,460   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,472   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,474   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,476   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,479   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,481   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,483   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,486   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,489   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,492   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,498   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,500   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,504   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,506   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,509   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,511   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,513   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,537   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,544   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,547   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,550   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,552   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,556   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,559   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,561   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,563   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,565   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,591   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,593   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,595   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,597   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,599   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,604   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,608   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,616   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,618   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,622   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,634   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,643   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,646   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,648   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,650   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,652   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,655   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,657   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,662   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,664   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,666   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,668   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,670   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,672   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,674   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,678   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,680   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,682   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,685   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,687   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,690   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,708   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,711   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,713   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,716   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,718   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,721   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,724   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,726   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,729   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,732   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,734   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,737   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,740   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,742   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,750   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,755   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,761   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,763   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,773   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,775   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,777   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,779   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,781   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,784   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,787   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,789   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,791   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,795   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,798   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,800   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,813   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,816   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,819   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,821   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,824   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,835   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,837   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,840   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,842   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,845   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,847   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,850   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,853   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,855   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,858   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,861   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,865   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,884   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,887   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,891   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,894   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,898   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,901   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,904   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,908   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,910   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,914   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,941   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,944   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,948   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,953   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,962   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,965   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,971   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,974   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,977   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,982   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,993   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:01,997   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,000   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,003   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,005   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,007   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,013   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,015   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,017   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,019   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,023   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,025   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,027   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,041   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,043   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,045   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,052   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,054   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,057   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,073   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,076   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,079   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,085   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,087   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,089   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,099   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,102   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,104   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,109   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,125   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,127   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,129   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,131   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,133   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,135   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,150   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,157   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,159   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,161   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,166   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,168   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,172   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,178   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/context_distributions
2025-10-28T22:39:02,182   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED
2025-10-28T22:39:02,185   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,186   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,189   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,192   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,194   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,197   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,200   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,203   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,206   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,209   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,212   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,215   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,218   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,221   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,224   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,227   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,230   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,233   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,236   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,239   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,242   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,245   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,248   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,251   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,254   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,257   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,259   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,262   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,265   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,267   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,269   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,272   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,274   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,277   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,279   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,283   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,285   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,288   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,291   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,293   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog
2025-10-28T22:39:02,296   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,297   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,299   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,301   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,304   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,307   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,310   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,313   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,316   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,319   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,322   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,325   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,329   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,332   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,335   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,339   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,342   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,345   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,348   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,351   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,354   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,356   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9
2025-10-28T22:39:02,361   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,362   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,364   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,367   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,369   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,371   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,374   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,377   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,379   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,382   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,385   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,387   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,390   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,392   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,396   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,398   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,401   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,404   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,407   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,410   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,413   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,416   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,419   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,422   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,424   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37
2025-10-28T22:39:02,428   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,429   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,432   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,434   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,438   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,440   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,443   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,446   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,449   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,452   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,455   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,457   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,460   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,463   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,467   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,471   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,474   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,476   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,480   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,482   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,486   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,488   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39
2025-10-28T22:39:02,493   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED
2025-10-28T22:39:02,495   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,497   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,499   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,505   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,511   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,516   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,520   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,526   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans
2025-10-28T22:39:02,531   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,532   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,535   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,537   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,540   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,543   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,546   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,549   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,552   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,555   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,558   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,561   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,564   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,568   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,571   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,575   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,579   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,582   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,586   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,588   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,591   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,593   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10
2025-10-28T22:39:02,598   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,599   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,602   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,604   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,605   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,609   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,612   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,614   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,617   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,620   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,623   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,626   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,629   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,631   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,634   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,637   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,640   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,643   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,649   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,652   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,656   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,659   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,662   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,665   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6
2025-10-28T22:39:02,670   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,671   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,674   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,678   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,680   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,682   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,686   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,689   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,692   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,696   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,700   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,704   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,708   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,712   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,717   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,721   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,725   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,730   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,735   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,960   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,966   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,973   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,980   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,986   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,990   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38
2025-10-28T22:39:02,998   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,000   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,004   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,008   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,013   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,017   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,022   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,025   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,029   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,032   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,036   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,039   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,042   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,045   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,048   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,052   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,055   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast
2025-10-28T22:39:03,059   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,061   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,066   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,069   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,071   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,077   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,081   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,085   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,090   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,095   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,100   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,105   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,111   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,114   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,118   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,122   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,125   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,129   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,133   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,136   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,140   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,143   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,146   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,149   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7
2025-10-28T22:39:03,153   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome
2025-10-28T22:39:03,155   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/dog
2025-10-28T22:39:03,157   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/dog
2025-10-28T22:39:03,222   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9
2025-10-28T22:39:03,223   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm9
2025-10-28T22:39:03,300   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37
2025-10-28T22:39:03,301   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37
2025-10-28T22:39:03,585   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39
2025-10-28T22:39:03,586   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm39
2025-10-28T22:39:03,654   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome
2025-10-28T22:39:03,656   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans
2025-10-28T22:39:03,657   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans
2025-10-28T22:39:03,847   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10
2025-10-28T22:39:03,848   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/mm10
2025-10-28T22:39:03,920   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6
2025-10-28T22:39:03,921   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/rn6
2025-10-28T22:39:04,282   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38
2025-10-28T22:39:04,284   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38
2025-10-28T22:39:04,364   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast
2025-10-28T22:39:04,365   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/yeast
2025-10-28T22:39:04,371   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7
2025-10-28T22:39:04,372   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/rn7
2025-10-28T22:39:04,483   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:39:04,485   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:39:04,487   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:39:04,490   copying build/lib/SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/chromosomes/exome/ebv
2025-10-28T22:39:04,493   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV
2025-10-28T22:39:04,495   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input
2025-10-28T22:39:04,498   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,500   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,503   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,505   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,508   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,511   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,513   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,516   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,518   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,520   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,523   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,525   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,527   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,530   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,532   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,534   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,537   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,540   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,542   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,545   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,548   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,550   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,553   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,556   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,559   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,561   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,565   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,567   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,570   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,572   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,576   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,578   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,581   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,583   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,585   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,588   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,590   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,593   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,595   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,597   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,600   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,602   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,605   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,608   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,611   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,613   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,615   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,618   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,621   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,624   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,626   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/560-Breast
2025-10-28T22:39:04,630   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,632   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,634   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,637   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,640   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,644   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,647   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,650   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,652   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,655   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,658   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,660   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,663   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,665   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,668   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,670   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,672   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,675   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,678   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,680   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,682   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,684   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,687   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,689   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,692   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,694   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,697   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,700   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,702   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,704   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,707   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,710   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,712   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,715   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,717   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,719   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,721   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,724   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,726   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,729   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,732   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,735   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,737   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,740   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,742   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,745   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,747   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,749   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,752   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,755   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,757   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/PCAWG
2025-10-28T22:39:04,761   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:39:04,762   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:39:04,765   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:39:04,767   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:39:04,770   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:39:04,802   copying build/lib/SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/SV/example_input/VCF
2025-10-28T22:39:04,834   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV
2025-10-28T22:39:04,836   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV/example_output
2025-10-28T22:39:04,837   copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_output
2025-10-28T22:39:04,841   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/references/CNV/example_input
2025-10-28T22:39:04,842   copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_input
2025-10-28T22:39:04,852   copying build/lib/SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV/example_input
2025-10-28T22:39:04,871   copying build/lib/SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV
2025-10-28T22:39:04,873   copying build/lib/SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/references/CNV
2025-10-28T22:39:04,876   creating build/bdist.linux-armv7l/wheel/SigProfilerMatrixGenerator/controllers
2025-10-28T22:39:04,877   copying build/lib/SigProfilerMatrixGenerator/controllers/cli_controller.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/controllers
2025-10-28T22:39:04,879   copying build/lib/SigProfilerMatrixGenerator/controllers/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator/controllers
2025-10-28T22:39:04,881   copying build/lib/SigProfilerMatrixGenerator/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator
2025-10-28T22:39:04,882   copying build/lib/SigProfilerMatrixGenerator/test_helpers.py -> build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator
2025-10-28T22:39:04,885   running install_egg_info
2025-10-28T22:39:04,899   Copying SigProfilerMatrixGenerator.egg-info to build/bdist.linux-armv7l/wheel/./SigProfilerMatrixGenerator-1.3.6-py3.11.egg-info
2025-10-28T22:39:04,916   running install_scripts
2025-10-28T22:39:04,929   creating build/bdist.linux-armv7l/wheel/sigprofilermatrixgenerator-1.3.6.dist-info/WHEEL
2025-10-28T22:39:04,932   creating '/tmp/pip-wheel-ckdv2wmt/.tmp-9a_l6v56/sigprofilermatrixgenerator-1.3.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-28T22:39:04,934   adding 'SigProfilerMatrixGenerator/__init__.py'
2025-10-28T22:39:04,937   adding 'SigProfilerMatrixGenerator/install.py'
2025-10-28T22:39:04,939   adding 'SigProfilerMatrixGenerator/test_helpers.py'
2025-10-28T22:39:04,940   adding 'SigProfilerMatrixGenerator/version.py'
2025-10-28T22:39:04,942   adding 'SigProfilerMatrixGenerator/controllers/__init__.py'
2025-10-28T22:39:04,944   adding 'SigProfilerMatrixGenerator/controllers/cli_controller.py'
2025-10-28T22:39:04,946   adding 'SigProfilerMatrixGenerator/references/CNV/CNV_features.tsv'
2025-10-28T22:39:04,947   adding 'SigProfilerMatrixGenerator/references/CNV/CN_classes_dictionary.txt'
2025-10-28T22:39:05,077   adding 'SigProfilerMatrixGenerator/references/CNV/example_input/Battenberg_test.tsv'
2025-10-28T22:39:05,147   adding 'SigProfilerMatrixGenerator/references/CNV/example_input/all.breast.ascat.summary.sample.tsv'
2025-10-28T22:39:05,153   adding 'SigProfilerMatrixGenerator/references/CNV/example_output/BATTENBERG-TEST.CNV48.matrix.tsv'
2025-10-28T22:39:05,159   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11346a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,161   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11348a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,162   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11352a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,164   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11361a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,165   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11379a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,166   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11384a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,168   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11389a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,171   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11742a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,172   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11743a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,176   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD11748a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,178   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13162a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,180   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13167a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,184   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13297a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,186   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13298a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,188   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD13306a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,189   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14456a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,190   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD14472a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,191   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD17973a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,193   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD18031a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,194   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD22364a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,196   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD23566a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,198   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24217a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,199   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24225a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,201   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24303a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,203   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD24314a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,204   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4069a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,209   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4103a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,211   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4199a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,214   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4255a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,215   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4606a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,217   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4875a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,219   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD4957a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,222   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6048a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,223   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD6414a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,224   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7199a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,229   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7205a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,230   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7238a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,233   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD7305a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,237   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8832a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,239   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8969a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,243   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD8982a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,245   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9002a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,248   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9064a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,250   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9541a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,252   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9568a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,254   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9572a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,255   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9589a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,256   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9593a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,258   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9755a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,259   adding 'SigProfilerMatrixGenerator/references/SV/example_input/560-Breast/PD9756a.560_breast.rearrangements.n560.bedpe'
2025-10-28T22:39:05,262   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA130927.bedpe'
2025-10-28T22:39:05,264   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA270468.bedpe'
2025-10-28T22:39:05,265   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA321048.bedpe'
2025-10-28T22:39:05,267   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA410978.bedpe'
2025-10-28T22:39:05,268   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413642.bedpe'
2025-10-28T22:39:05,269   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413758.bedpe'
2025-10-28T22:39:05,271   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA413928.bedpe'
2025-10-28T22:39:05,272   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499742.bedpe'
2025-10-28T22:39:05,273   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA499746.bedpe'
2025-10-28T22:39:05,275   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501385.bedpe'
2025-10-28T22:39:05,276   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501469.bedpe'
2025-10-28T22:39:05,279   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501576.bedpe'
2025-10-28T22:39:05,282   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501599.bedpe'
2025-10-28T22:39:05,284   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA501607.bedpe'
2025-10-28T22:39:05,287   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505478.bedpe'
2025-10-28T22:39:05,289   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505529.bedpe'
2025-10-28T22:39:05,291   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505768.bedpe'
2025-10-28T22:39:05,294   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA505918.bedpe'
2025-10-28T22:39:05,295   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA507250.bedpe'
2025-10-28T22:39:05,298   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515261.bedpe'
2025-10-28T22:39:05,300   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA515347.bedpe'
2025-10-28T22:39:05,301   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517281.bedpe'
2025-10-28T22:39:05,303   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA517376.bedpe'
2025-10-28T22:39:05,305   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA520203.bedpe'
2025-10-28T22:39:05,307   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528809.bedpe'
2025-10-28T22:39:05,310   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528848.bedpe'
2025-10-28T22:39:05,314   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528876.bedpe'
2025-10-28T22:39:05,318   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA528947.bedpe'
2025-10-28T22:39:05,319   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529739.bedpe'
2025-10-28T22:39:05,320   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529747.bedpe'
2025-10-28T22:39:05,322   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529774.bedpe'
2025-10-28T22:39:05,323   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA529837.bedpe'
2025-10-28T22:39:05,324   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530440.bedpe'
2025-10-28T22:39:05,326   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530512.bedpe'
2025-10-28T22:39:05,328   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530594.bedpe'
2025-10-28T22:39:05,330   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA530642.bedpe'
2025-10-28T22:39:05,332   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA533704.bedpe'
2025-10-28T22:39:05,341   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538871.bedpe'
2025-10-28T22:39:05,343   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA538992.bedpe'
2025-10-28T22:39:05,344   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA539008.bedpe'
2025-10-28T22:39:05,346   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541765.bedpe'
2025-10-28T22:39:05,348   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA541894.bedpe'
2025-10-28T22:39:05,350   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542155.bedpe'
2025-10-28T22:39:05,351   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542181.bedpe'
2025-10-28T22:39:05,352   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542577.bedpe'
2025-10-28T22:39:05,354   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542830.bedpe'
2025-10-28T22:39:05,355   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA542879.bedpe'
2025-10-28T22:39:05,358   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA569081.bedpe'
2025-10-28T22:39:05,360   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570843.bedpe'
2025-10-28T22:39:05,361   adding 'SigProfilerMatrixGenerator/references/SV/example_input/PCAWG/SA570896.bedpe'
2025-10-28T22:39:05,387   adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/COLO829v003T.purple.sv.vcf'
2025-10-28T22:39:05,391   adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/delly.vcf'
2025-10-28T22:39:05,575   adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/gnomad.vcf'
2025-10-28T22:39:05,589   adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/lumpy.vcf'
2025-10-28T22:39:05,590   adding 'SigProfilerMatrixGenerator/references/SV/example_input/VCF/manta.vcf'
2025-10-28T22:39:05,623   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536.csv'
2025-10-28T22:39:05,646   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_1536_exome.csv'
2025-10-28T22:39:05,647   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24.csv'
2025-10-28T22:39:05,649   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_24_exome.csv'
2025-10-28T22:39:05,653   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384.csv'
2025-10-28T22:39:05,657   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_384_exome.csv'
2025-10-28T22:39:05,658   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6.csv'
2025-10-28T22:39:05,763   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144.csv'
2025-10-28T22:39:05,865   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6144_exome.csv'
2025-10-28T22:39:05,868   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_6_exome.csv'
2025-10-28T22:39:05,869   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96.csv'
2025-10-28T22:39:05,871   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_96_exome.csv'
2025-10-28T22:39:05,872   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS.csv'
2025-10-28T22:39:05,874   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186.csv'
2025-10-28T22:39:05,875   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS186_exome.csv'
2025-10-28T22:39:05,876   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh37_DBS_exome.csv'
2025-10-28T22:39:05,902   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536.csv'
2025-10-28T22:39:05,924   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_1536_exome.csv'
2025-10-28T22:39:05,926   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24.csv'
2025-10-28T22:39:05,927   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_24_exome.csv'
2025-10-28T22:39:05,932   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384.csv'
2025-10-28T22:39:05,935   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_384_exome.csv'
2025-10-28T22:39:05,937   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6.csv'
2025-10-28T22:39:06,042   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144.csv'
2025-10-28T22:39:06,146   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6144_exome.csv'
2025-10-28T22:39:06,149   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_6_exome.csv'
2025-10-28T22:39:06,150   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96.csv'
2025-10-28T22:39:06,152   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_96_exome.csv'
2025-10-28T22:39:06,153   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS.csv'
2025-10-28T22:39:06,155   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186.csv'
2025-10-28T22:39:06,157   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS186_exome.csv'
2025-10-28T22:39:06,158   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_GRCh38_DBS_exome.csv'
2025-10-28T22:39:06,181   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536.csv'
2025-10-28T22:39:06,200   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_1536_exome.csv'
2025-10-28T22:39:06,202   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24.csv'
2025-10-28T22:39:06,203   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_24_exome.csv'
2025-10-28T22:39:06,207   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384.csv'
2025-10-28T22:39:06,210   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_384_exome.csv'
2025-10-28T22:39:06,212   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6.csv'
2025-10-28T22:39:06,300   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144.csv'
2025-10-28T22:39:06,389   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6144_exome.csv'
2025-10-28T22:39:06,391   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_6_exome.csv'
2025-10-28T22:39:06,392   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96.csv'
2025-10-28T22:39:06,394   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_96_exome.csv'
2025-10-28T22:39:06,395   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS.csv'
2025-10-28T22:39:06,397   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186.csv'
2025-10-28T22:39:06,398   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS186_exome.csv'
2025-10-28T22:39:06,399   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm10_DBS_exome.csv'
2025-10-28T22:39:06,423   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536.csv'
2025-10-28T22:39:06,441   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_1536_exome.csv'
2025-10-28T22:39:06,443   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24.csv'
2025-10-28T22:39:06,444   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_24_exome.csv'
2025-10-28T22:39:06,448   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384.csv'
2025-10-28T22:39:06,451   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_384_exome.csv'
2025-10-28T22:39:06,452   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6.csv'
2025-10-28T22:39:06,544   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144.csv'
2025-10-28T22:39:06,632   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6144_exome.csv'
2025-10-28T22:39:06,634   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_6_exome.csv'
2025-10-28T22:39:06,636   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96.csv'
2025-10-28T22:39:06,637   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_96_exome.csv'
2025-10-28T22:39:06,639   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS.csv'
2025-10-28T22:39:06,640   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186.csv'
2025-10-28T22:39:06,642   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS186_exome.csv'
2025-10-28T22:39:06,643   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm39_DBS_exome.csv'
2025-10-28T22:39:06,666   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536.csv'
2025-10-28T22:39:06,685   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_1536_exome.csv'
2025-10-28T22:39:06,687   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24.csv'
2025-10-28T22:39:06,688   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_24_exome.csv'
2025-10-28T22:39:06,691   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384.csv'
2025-10-28T22:39:06,694   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_384_exome.csv'
2025-10-28T22:39:06,696   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6.csv'
2025-10-28T22:39:06,785   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144.csv'
2025-10-28T22:39:06,873   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6144_exome.csv'
2025-10-28T22:39:06,875   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_6_exome.csv'
2025-10-28T22:39:06,877   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96.csv'
2025-10-28T22:39:06,879   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_96_exome.csv'
2025-10-28T22:39:06,880   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS.csv'
2025-10-28T22:39:06,881   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186.csv'
2025-10-28T22:39:06,883   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS186_exome.csv'
2025-10-28T22:39:06,884   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_mm9_DBS_exome.csv'
2025-10-28T22:39:06,907   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536.csv'
2025-10-28T22:39:06,927   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_1536_exome.csv'
2025-10-28T22:39:06,929   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24.csv'
2025-10-28T22:39:06,930   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_24_exome.csv'
2025-10-28T22:39:06,933   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384.csv'
2025-10-28T22:39:06,937   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_384_exome.csv'
2025-10-28T22:39:06,938   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6.csv'
2025-10-28T22:39:07,034   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144.csv'
2025-10-28T22:39:07,128   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6144_exome.csv'
2025-10-28T22:39:07,130   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_6_exome.csv'
2025-10-28T22:39:07,132   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96.csv'
2025-10-28T22:39:07,134   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_96_exome.csv'
2025-10-28T22:39:07,135   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_DBS.csv'
2025-10-28T22:39:07,137   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn6_DBS186.csv'
2025-10-28T22:39:07,161   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536.csv'
2025-10-28T22:39:07,182   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_1536_exome.csv'
2025-10-28T22:39:07,183   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24.csv'
2025-10-28T22:39:07,185   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_24_exome.csv'
2025-10-28T22:39:07,189   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384.csv'
2025-10-28T22:39:07,192   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_384_exome.csv'
2025-10-28T22:39:07,193   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6.csv'
2025-10-28T22:39:07,290   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144.csv'
2025-10-28T22:39:07,381   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6144_exome.csv'
2025-10-28T22:39:07,384   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_6_exome.csv'
2025-10-28T22:39:07,385   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96.csv'
2025-10-28T22:39:07,387   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_96_exome.csv'
2025-10-28T22:39:07,388   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS.csv'
2025-10-28T22:39:07,390   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186.csv'
2025-10-28T22:39:07,391   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS186_exome.csv'
2025-10-28T22:39:07,392   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_rn7_DBS_exome.csv'
2025-10-28T22:39:07,405   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_1536.csv'
2025-10-28T22:39:07,407   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_192.csv'
2025-10-28T22:39:07,408   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_24.csv'
2025-10-28T22:39:07,410   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_384.csv'
2025-10-28T22:39:07,412   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6.csv'
2025-10-28T22:39:07,474   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_6144.csv'
2025-10-28T22:39:07,476   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_96.csv'
2025-10-28T22:39:07,477   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS.csv'
2025-10-28T22:39:07,478   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_counts_yeast_DBS186.csv'
2025-10-28T22:39:07,513   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female.csv'
2025-10-28T22:39:07,549   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_female_exome.csv'
2025-10-28T22:39:07,614   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male.csv'
2025-10-28T22:39:07,680   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_1536_male_exome.csv'
2025-10-28T22:39:07,683   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female.csv'
2025-10-28T22:39:07,685   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_female_exome.csv'
2025-10-28T22:39:07,686   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male.csv'
2025-10-28T22:39:07,688   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_24_male_exome.csv'
2025-10-28T22:39:07,696   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female.csv'
2025-10-28T22:39:07,704   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_female_exome.csv'
2025-10-28T22:39:07,719   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male.csv'
2025-10-28T22:39:07,734   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_384_male_exome.csv'
2025-10-28T22:39:07,880   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female.csv'
2025-10-28T22:39:08,025   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_female_exome.csv'
2025-10-28T22:39:08,294   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male.csv'
2025-10-28T22:39:08,544   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6144_male_exome.csv'
2025-10-28T22:39:08,552   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female.csv'
2025-10-28T22:39:08,554   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_female_exome.csv'
2025-10-28T22:39:08,555   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male.csv'
2025-10-28T22:39:08,556   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_6_male_exome.csv'
2025-10-28T22:39:08,558   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female.csv'
2025-10-28T22:39:08,561   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_female_exome.csv'
2025-10-28T22:39:08,564   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male.csv'
2025-10-28T22:39:08,567   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_96_male_exome.csv'
2025-10-28T22:39:08,569   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female.csv'
2025-10-28T22:39:08,572   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_BED.csv'
2025-10-28T22:39:08,574   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_female_exome.csv'
2025-10-28T22:39:08,577   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male.csv'
2025-10-28T22:39:08,579   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS186_male_exome.csv'
2025-10-28T22:39:08,581   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female.csv'
2025-10-28T22:39:08,582   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_female_exome.csv'
2025-10-28T22:39:08,584   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male.csv'
2025-10-28T22:39:08,585   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh37_DBS_male_exome.csv'
2025-10-28T22:39:08,621   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female.csv'
2025-10-28T22:39:08,688   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_female_exome.csv'
2025-10-28T22:39:08,753   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male.csv'
2025-10-28T22:39:08,818   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_1536_male_exome.csv'
2025-10-28T22:39:08,821   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female.csv'
2025-10-28T22:39:08,822   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_female_exome.csv'
2025-10-28T22:39:08,824   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male.csv'
2025-10-28T22:39:08,825   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_24_male_exome.csv'
2025-10-28T22:39:08,833   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female.csv'
2025-10-28T22:39:08,848   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_female_exome.csv'
2025-10-28T22:39:08,863   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male.csv'
2025-10-28T22:39:08,872   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_384_male_exome.csv'
2025-10-28T22:39:09,016   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female.csv'
2025-10-28T22:39:09,162   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_female_exome.csv'
2025-10-28T22:39:09,427   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male.csv'
2025-10-28T22:39:09,680   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6144_male_exome.csv'
2025-10-28T22:39:09,688   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female.csv'
2025-10-28T22:39:09,689   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_female_exome.csv'
2025-10-28T22:39:09,691   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male.csv'
2025-10-28T22:39:09,692   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_6_male_exome.csv'
2025-10-28T22:39:09,694   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female.csv'
2025-10-28T22:39:09,697   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_female_exome.csv'
2025-10-28T22:39:09,700   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male.csv'
2025-10-28T22:39:09,703   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_96_male_exome.csv'
2025-10-28T22:39:09,706   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female.csv'
2025-10-28T22:39:09,709   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_female_exome.csv'
2025-10-28T22:39:09,711   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male.csv'
2025-10-28T22:39:09,713   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS186_male_exome.csv'
2025-10-28T22:39:09,715   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_exome_old.csv'
2025-10-28T22:39:09,717   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female.csv'
2025-10-28T22:39:09,718   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_female_exome.csv'
2025-10-28T22:39:09,720   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_GRCh38_DBS_male.csv'
2025-10-28T22:39:09,750   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female.csv'
2025-10-28T22:39:09,781   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_female_exome.csv'
2025-10-28T22:39:09,836   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male.csv'
2025-10-28T22:39:09,893   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_1536_male_exome.csv'
2025-10-28T22:39:09,896   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female.csv'
2025-10-28T22:39:09,897   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_female_exome.csv'
2025-10-28T22:39:09,899   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male.csv'
2025-10-28T22:39:09,900   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_24_male_exome.csv'
2025-10-28T22:39:09,907   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female.csv'
2025-10-28T22:39:09,914   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_female_exome.csv'
2025-10-28T22:39:09,926   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male.csv'
2025-10-28T22:39:09,933   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_384_male_exome.csv'
2025-10-28T22:39:10,060   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female.csv'
2025-10-28T22:39:10,187   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_female_exome.csv'
2025-10-28T22:39:10,419   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male.csv'
2025-10-28T22:39:10,638   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6144_male_exome.csv'
2025-10-28T22:39:10,645   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female.csv'
2025-10-28T22:39:10,646   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_female_exome.csv'
2025-10-28T22:39:10,648   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_6_male_exome.csv'
2025-10-28T22:39:10,650   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female.csv'
2025-10-28T22:39:10,652   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_female_exome.csv'
2025-10-28T22:39:10,655   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male.csv'
2025-10-28T22:39:10,657   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_96_male_exome.csv'
2025-10-28T22:39:10,660   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female.csv'
2025-10-28T22:39:10,662   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_female_exome.csv'
2025-10-28T22:39:10,664   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male.csv'
2025-10-28T22:39:10,666   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS186_male_exome.csv'
2025-10-28T22:39:10,668   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female.csv'
2025-10-28T22:39:10,669   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_female_exome.csv'
2025-10-28T22:39:10,670   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male.csv'
2025-10-28T22:39:10,672   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm10_DBS_male_exome.csv'
2025-10-28T22:39:10,729   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female.csv'
2025-10-28T22:39:10,787   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_female_exome.csv'
2025-10-28T22:39:10,847   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male.csv'
2025-10-28T22:39:10,909   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_1536_male_exome.csv'
2025-10-28T22:39:10,912   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female.csv'
2025-10-28T22:39:10,914   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_female_exome.csv'
2025-10-28T22:39:10,915   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male.csv'
2025-10-28T22:39:10,916   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_24_male_exome.csv'
2025-10-28T22:39:10,929   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female.csv'
2025-10-28T22:39:10,942   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_female_exome.csv'
2025-10-28T22:39:10,956   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male.csv'
2025-10-28T22:39:10,970   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_384_male_exome.csv'
2025-10-28T22:39:11,204   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female.csv'
2025-10-28T22:39:11,429   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_female_exome.csv'
2025-10-28T22:39:11,683   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male.csv'
2025-10-28T22:39:11,917   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6144_male_exome.csv'
2025-10-28T22:39:11,924   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female.csv'
2025-10-28T22:39:11,925   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_female_exome.csv'
2025-10-28T22:39:11,927   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male.csv'
2025-10-28T22:39:11,928   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_6_male_exome.csv'
2025-10-28T22:39:11,931   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female.csv'
2025-10-28T22:39:11,934   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_female_exome.csv'
2025-10-28T22:39:11,937   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male.csv'
2025-10-28T22:39:11,940   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_96_male_exome.csv'
2025-10-28T22:39:11,942   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female.csv'
2025-10-28T22:39:11,945   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_female_exome.csv'
2025-10-28T22:39:11,947   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male.csv'
2025-10-28T22:39:11,949   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS186_male_exome.csv'
2025-10-28T22:39:11,951   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female.csv'
2025-10-28T22:39:11,953   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_female_exome.csv'
2025-10-28T22:39:11,954   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male.csv'
2025-10-28T22:39:11,956   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm39_DBS_male_exome.csv'
2025-10-28T22:39:11,987   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female.csv'
2025-10-28T22:39:12,018   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_female_exome.csv'
2025-10-28T22:39:12,074   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male.csv'
2025-10-28T22:39:12,131   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_1536_male_exome.csv'
2025-10-28T22:39:12,134   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female.csv'
2025-10-28T22:39:12,136   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_female_exome.csv'
2025-10-28T22:39:12,137   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male.csv'
2025-10-28T22:39:12,139   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_24_male_exome.csv'
2025-10-28T22:39:12,146   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female.csv'
2025-10-28T22:39:12,153   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_female_exome.csv'
2025-10-28T22:39:12,165   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male.csv'
2025-10-28T22:39:12,172   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_384_male_exome.csv'
2025-10-28T22:39:12,299   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female.csv'
2025-10-28T22:39:12,425   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_female_exome.csv'
2025-10-28T22:39:12,655   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male.csv'
2025-10-28T22:39:12,875   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6144_male_exome.csv'
2025-10-28T22:39:12,882   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female.csv'
2025-10-28T22:39:12,883   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_female_exome.csv'
2025-10-28T22:39:12,885   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male.csv'
2025-10-28T22:39:12,886   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_6_male_exome.csv'
2025-10-28T22:39:12,888   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female.csv'
2025-10-28T22:39:12,890   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_female_exome.csv'
2025-10-28T22:39:12,893   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male.csv'
2025-10-28T22:39:12,896   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_96_male_exome.csv'
2025-10-28T22:39:12,898   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female.csv'
2025-10-28T22:39:12,901   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_female_exome.csv'
2025-10-28T22:39:12,903   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male.csv'
2025-10-28T22:39:12,906   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS186_male_exome.csv'
2025-10-28T22:39:12,907   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female.csv'
2025-10-28T22:39:12,909   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_female_exome.csv'
2025-10-28T22:39:12,910   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male.csv'
2025-10-28T22:39:12,912   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_mm9_DBS_male_exome.csv'
2025-10-28T22:39:12,944   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female.csv'
2025-10-28T22:39:12,976   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_female_exome.csv'
2025-10-28T22:39:13,010   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male.csv'
2025-10-28T22:39:13,044   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_1536_male_exome.csv'
2025-10-28T22:39:13,046   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female.csv'
2025-10-28T22:39:13,048   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_female_exome.csv'
2025-10-28T22:39:13,050   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male.csv'
2025-10-28T22:39:13,051   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_24_male_exome.csv'
2025-10-28T22:39:13,058   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female.csv'
2025-10-28T22:39:13,066   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_female_exome.csv'
2025-10-28T22:39:13,073   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male.csv'
2025-10-28T22:39:13,081   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_384_male_exome.csv'
2025-10-28T22:39:13,210   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female.csv'
2025-10-28T22:39:13,348   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_female_exome.csv'
2025-10-28T22:39:13,486   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male.csv'
2025-10-28T22:39:13,629   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6144_male_exome.csv'
2025-10-28T22:39:13,634   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female.csv'
2025-10-28T22:39:13,635   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_female_exome.csv'
2025-10-28T22:39:13,637   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male.csv'
2025-10-28T22:39:13,638   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_6_male_exome.csv'
2025-10-28T22:39:13,640   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female.csv'
2025-10-28T22:39:13,642   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_female_exome.csv'
2025-10-28T22:39:13,645   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male.csv'
2025-10-28T22:39:13,647   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn6_96_male_exome.csv'
2025-10-28T22:39:13,708   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female.csv'
2025-10-28T22:39:13,770   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_female_exome.csv'
2025-10-28T22:39:13,835   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male.csv'
2025-10-28T22:39:13,900   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_1536_male_exome.csv'
2025-10-28T22:39:13,903   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female.csv'
2025-10-28T22:39:13,904   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_female_exome.csv'
2025-10-28T22:39:13,906   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male.csv'
2025-10-28T22:39:13,908   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_24_male_exome.csv'
2025-10-28T22:39:13,921   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female.csv'
2025-10-28T22:39:13,935   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_female_exome.csv'
2025-10-28T22:39:13,950   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male.csv'
2025-10-28T22:39:13,964   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_384_male_exome.csv'
2025-10-28T22:39:14,213   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female.csv'
2025-10-28T22:39:14,449   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_female_exome.csv'
2025-10-28T22:39:14,717   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male.csv'
2025-10-28T22:39:14,960   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6144_male_exome.csv'
2025-10-28T22:39:14,967   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female.csv'
2025-10-28T22:39:14,968   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_female_exome.csv'
2025-10-28T22:39:14,970   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male.csv'
2025-10-28T22:39:14,971   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_6_male_exome.csv'
2025-10-28T22:39:14,974   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female.csv'
2025-10-28T22:39:14,977   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_female_exome.csv'
2025-10-28T22:39:14,981   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male.csv'
2025-10-28T22:39:14,984   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_96_male_exome.csv'
2025-10-28T22:39:14,986   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female.csv'
2025-10-28T22:39:14,989   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_female_exome.csv'
2025-10-28T22:39:14,991   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male.csv'
2025-10-28T22:39:14,994   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS186_male_exome.csv'
2025-10-28T22:39:14,996   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female.csv'
2025-10-28T22:39:14,997   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_female_exome.csv'
2025-10-28T22:39:14,999   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male.csv'
2025-10-28T22:39:15,001   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_rn7_DBS_male_exome.csv'
2025-10-28T22:39:15,009   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_signatures_96.txt'
2025-10-28T22:39:15,055   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_1536_female.csv'
2025-10-28T22:39:15,063   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_192_female.csv'
2025-10-28T22:39:15,065   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_24_female.csv'
2025-10-28T22:39:15,075   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_384_female.csv'
2025-10-28T22:39:15,242   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6144_female.csv'
2025-10-28T22:39:15,247   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_6_female.csv'
2025-10-28T22:39:15,250   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_96_female.csv'
2025-10-28T22:39:15,252   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS186_female.csv'
2025-10-28T22:39:15,254   adding 'SigProfilerMatrixGenerator/references/chromosomes/context_distributions/context_distribution_yeast_DBS_female.csv'
2025-10-28T22:39:15,256   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/__init__.py'
2025-10-28T22:39:18,017   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh37/GRCh37_exome.interval_list'
2025-10-28T22:39:19,085   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/GRCh38/GRCh38_exome.interval_list'
2025-10-28T22:39:20,386   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/c_elegans/c_elegans_exome.interval_list'
2025-10-28T22:39:21,286   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/dog/dog_exome.interval_list'
2025-10-28T22:39:21,316   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/ebv_exome.interval_list'
2025-10-28T22:39:21,318   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/multipleVariableTesting_mar12_2020.txt'
2025-10-28T22:39:21,321   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/ebv/tcga_cyclic_regions(AutoRecovered).csv'
2025-10-28T22:39:22,203   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm10/mm10_exome.interval_list'
2025-10-28T22:39:23,114   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm39/mm39_exome.interval_list'
2025-10-28T22:39:24,026   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/mm9/mm9_exome.interval_list'
2025-10-28T22:39:26,335   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/rn6/rn6_exome.interval_list'
2025-10-28T22:39:27,545   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/rn7/rn7_exome.interval_list'
2025-10-28T22:39:27,639   adding 'SigProfilerMatrixGenerator/references/chromosomes/exome/yeast/yeast_exome.interval_list'
2025-10-28T22:39:27,642   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/__init__.py'
2025-10-28T22:39:27,664   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/10_transcripts.txt'
2025-10-28T22:39:27,708   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/11_transcripts.txt'
2025-10-28T22:39:27,753   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/12_transcripts.txt'
2025-10-28T22:39:27,764   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/13_transcripts.txt'
2025-10-28T22:39:27,788   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/14_transcripts.txt'
2025-10-28T22:39:27,810   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/15_transcripts.txt'
2025-10-28T22:39:27,841   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/16_transcripts.txt'
2025-10-28T22:39:27,887   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/17_transcripts.txt'
2025-10-28T22:39:27,900   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/18_transcripts.txt'
2025-10-28T22:39:27,951   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/19_transcripts.txt'
2025-10-28T22:39:28,014   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/1_transcripts.txt'
2025-10-28T22:39:28,032   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/20_transcripts.txt'
2025-10-28T22:39:28,039   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/21_transcripts.txt'
2025-10-28T22:39:28,054   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/22_transcripts.txt'
2025-10-28T22:39:28,099   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/2_transcripts.txt'
2025-10-28T22:39:28,141   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/3_transcripts.txt'
2025-10-28T22:39:28,167   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/4_transcripts.txt'
2025-10-28T22:39:28,196   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/5_transcripts.txt'
2025-10-28T22:39:28,228   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/6_transcripts.txt'
2025-10-28T22:39:28,259   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/7_transcripts.txt'
2025-10-28T22:39:28,284   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/8_transcripts.txt'
2025-10-28T22:39:28,307   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/9_transcripts.txt'
2025-10-28T22:39:28,309   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/MT_transcripts.txt'
2025-10-28T22:39:28,331   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/X_transcripts.txt'
2025-10-28T22:39:28,334   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh37/Y_transcripts.txt'
2025-10-28T22:39:28,356   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/10_transcripts.txt'
2025-10-28T22:39:28,401   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/11_transcripts.txt'
2025-10-28T22:39:28,443   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/12_transcripts.txt'
2025-10-28T22:39:28,454   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/13_transcripts.txt'
2025-10-28T22:39:28,478   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/14_transcripts.txt'
2025-10-28T22:39:28,500   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/15_transcripts.txt'
2025-10-28T22:39:28,532   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/16_transcripts.txt'
2025-10-28T22:39:28,575   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/17_transcripts.txt'
2025-10-28T22:39:28,588   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/18_transcripts.txt'
2025-10-28T22:39:28,639   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/19_transcripts.txt'
2025-10-28T22:39:28,702   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/1_transcripts.txt'
2025-10-28T22:39:28,720   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/20_transcripts.txt'
2025-10-28T22:39:28,728   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/21_transcripts.txt'
2025-10-28T22:39:28,742   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/22_transcripts.txt'
2025-10-28T22:39:28,787   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/2_transcripts.txt'
2025-10-28T22:39:28,830   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/3_transcripts.txt'
2025-10-28T22:39:28,858   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/4_transcripts.txt'
2025-10-28T22:39:28,889   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/5_transcripts.txt'
2025-10-28T22:39:28,921   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/6_transcripts.txt'
2025-10-28T22:39:28,952   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/7_transcripts.txt'
2025-10-28T22:39:28,978   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/8_transcripts.txt'
2025-10-28T22:39:29,001   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/9_transcripts.txt'
2025-10-28T22:39:29,003   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/MT_transcripts.txt'
2025-10-28T22:39:29,027   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/X_transcripts.txt'
2025-10-28T22:39:29,030   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/GRCh38/Y_transcripts.txt'
2025-10-28T22:39:29,064   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/III_transcripts.txt'
2025-10-28T22:39:29,107   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/II_transcripts.txt'
2025-10-28T22:39:29,155   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/IV_transcripts.txt'
2025-10-28T22:39:29,195   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/I_transcripts.txt'
2025-10-28T22:39:29,198   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/MtDNA_transcripts.txt'
2025-10-28T22:39:29,256   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/V_transcripts.txt'
2025-10-28T22:39:29,293   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/c_elegans/X_transcripts.txt'
2025-10-28T22:39:29,303   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/10_transcripts.txt'
2025-10-28T22:39:29,309   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/11_transcripts.txt'
2025-10-28T22:39:29,315   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/12_transcripts.txt'
2025-10-28T22:39:29,320   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/13_transcripts.txt'
2025-10-28T22:39:29,324   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/14_transcripts.txt'
2025-10-28T22:39:29,329   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/15_transcripts.txt'
2025-10-28T22:39:29,334   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/16_transcripts.txt'
2025-10-28T22:39:29,341   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/17_transcripts.txt'
2025-10-28T22:39:29,349   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/18_transcripts.txt'
2025-10-28T22:39:29,352   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/19_transcripts.txt'
2025-10-28T22:39:29,365   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/1_transcripts.txt'
2025-10-28T22:39:29,376   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/20_transcripts.txt'
2025-10-28T22:39:29,382   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/21_transcripts.txt'
2025-10-28T22:39:29,385   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/22_transcripts.txt'
2025-10-28T22:39:29,388   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/23_transcripts.txt'
2025-10-28T22:39:29,394   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/24_transcripts.txt'
2025-10-28T22:39:29,398   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/25_transcripts.txt'
2025-10-28T22:39:29,404   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/26_transcripts.txt'
2025-10-28T22:39:29,410   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/27_transcripts.txt'
2025-10-28T22:39:29,414   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/28_transcripts.txt'
2025-10-28T22:39:29,417   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/29_transcripts.txt'
2025-10-28T22:39:29,425   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/2_transcripts.txt'
2025-10-28T22:39:29,430   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/30_transcripts.txt'
2025-10-28T22:39:29,433   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/31_transcripts.txt'
2025-10-28T22:39:29,436   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/32_transcripts.txt'
2025-10-28T22:39:29,439   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/33_transcripts.txt'
2025-10-28T22:39:29,442   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/34_transcripts.txt'
2025-10-28T22:39:29,445   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/35_transcripts.txt'
2025-10-28T22:39:29,447   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/36_transcripts.txt'
2025-10-28T22:39:29,450   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/37_transcripts.txt'
2025-10-28T22:39:29,453   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/38_transcripts.txt'
2025-10-28T22:39:29,458   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/3_transcripts.txt'
2025-10-28T22:39:29,464   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/4_transcripts.txt'
2025-10-28T22:39:29,475   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/5_transcripts.txt'
2025-10-28T22:39:29,485   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/6_transcripts.txt'
2025-10-28T22:39:29,493   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/7_transcripts.txt'
2025-10-28T22:39:29,500   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/8_transcripts.txt'
2025-10-28T22:39:29,512   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/9_transcripts.txt'
2025-10-28T22:39:29,521   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/dog/X_transcripts.txt'
2025-10-28T22:39:29,524   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/ebv/gi_82503188_ref_NC_007605_transcripts.txt'
2025-10-28T22:39:29,548   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/10_transcripts.txt'
2025-10-28T22:39:29,583   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/11_transcripts.txt'
2025-10-28T22:39:29,600   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/12_transcripts.txt'
2025-10-28T22:39:29,618   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/13_transcripts.txt'
2025-10-28T22:39:29,637   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/14_transcripts.txt'
2025-10-28T22:39:29,656   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/15_transcripts.txt'
2025-10-28T22:39:29,672   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/16_transcripts.txt'
2025-10-28T22:39:29,695   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/17_transcripts.txt'
2025-10-28T22:39:29,705   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/18_transcripts.txt'
2025-10-28T22:39:29,719   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/19_transcripts.txt'
2025-10-28T22:39:29,748   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/1_transcripts.txt'
2025-10-28T22:39:29,792   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/2_transcripts.txt'
2025-10-28T22:39:29,818   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/3_transcripts.txt'
2025-10-28T22:39:29,848   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/4_transcripts.txt'
2025-10-28T22:39:29,880   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/5_transcripts.txt'
2025-10-28T22:39:29,908   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/6_transcripts.txt'
2025-10-28T22:39:29,958   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/7_transcripts.txt'
2025-10-28T22:39:29,982   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/8_transcripts.txt'
2025-10-28T22:39:30,012   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/9_transcripts.txt'
2025-10-28T22:39:30,015   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/MT_transcripts.txt'
2025-10-28T22:39:30,033   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/X_transcripts.txt'
2025-10-28T22:39:30,037   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm10/Y_transcripts.txt'
2025-10-28T22:39:30,061   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/10_transcripts.txt'
2025-10-28T22:39:30,096   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/11_transcripts.txt'
2025-10-28T22:39:30,113   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/12_transcripts.txt'
2025-10-28T22:39:30,131   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/13_transcripts.txt'
2025-10-28T22:39:30,150   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/14_transcripts.txt'
2025-10-28T22:39:30,169   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/15_transcripts.txt'
2025-10-28T22:39:30,185   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/16_transcripts.txt'
2025-10-28T22:39:30,210   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/17_transcripts.txt'
2025-10-28T22:39:30,223   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/18_transcripts.txt'
2025-10-28T22:39:30,243   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/19_transcripts.txt'
2025-10-28T22:39:30,272   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/1_transcripts.txt'
2025-10-28T22:39:30,316   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/2_transcripts.txt'
2025-10-28T22:39:30,342   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/3_transcripts.txt'
2025-10-28T22:39:30,377   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/4_transcripts.txt'
2025-10-28T22:39:30,409   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/5_transcripts.txt'
2025-10-28T22:39:30,437   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/6_transcripts.txt'
2025-10-28T22:39:30,488   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/7_transcripts.txt'
2025-10-28T22:39:30,513   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/8_transcripts.txt'
2025-10-28T22:39:30,543   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/9_transcripts.txt'
2025-10-28T22:39:30,563   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/X_transcripts.txt'
2025-10-28T22:39:30,567   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm39/Y_transcripts.txt'
2025-10-28T22:39:30,595   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/10_transcripts.txt'
2025-10-28T22:39:30,654   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/11_transcripts.txt'
2025-10-28T22:39:30,676   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/12_transcripts.txt'
2025-10-28T22:39:30,696   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/13_transcripts.txt'
2025-10-28T22:39:30,718   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/14_transcripts.txt'
2025-10-28T22:39:30,740   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/15_transcripts.txt'
2025-10-28T22:39:30,762   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/16_transcripts.txt'
2025-10-28T22:39:30,793   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/17_transcripts.txt'
2025-10-28T22:39:30,807   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/18_transcripts.txt'
2025-10-28T22:39:30,825   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/19_transcripts.txt'
2025-10-28T22:39:30,860   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/1_transcripts.txt'
2025-10-28T22:39:30,929   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/2_transcripts.txt'
2025-10-28T22:39:30,964   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/3_transcripts.txt'
2025-10-28T22:39:31,015   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/4_transcripts.txt'
2025-10-28T22:39:31,061   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/5_transcripts.txt'
2025-10-28T22:39:31,103   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/6_transcripts.txt'
2025-10-28T22:39:31,160   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/7_transcripts.txt'
2025-10-28T22:39:31,199   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/8_transcripts.txt'
2025-10-28T22:39:31,232   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/9_transcripts.txt'
2025-10-28T22:39:31,235   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/MT_transcripts.txt'
2025-10-28T22:39:31,261   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/X_transcripts.txt'
2025-10-28T22:39:31,264   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/mm9/Y_transcripts.txt'
2025-10-28T22:39:31,284   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/10_transcripts.txt'
2025-10-28T22:39:31,292   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/11_transcripts.txt'
2025-10-28T22:39:31,300   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/12_transcripts.txt'
2025-10-28T22:39:31,308   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/13_transcripts.txt'
2025-10-28T22:39:31,316   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/14_transcripts.txt'
2025-10-28T22:39:31,325   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/15_transcripts.txt'
2025-10-28T22:39:31,333   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/16_transcripts.txt'
2025-10-28T22:39:31,341   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/17_transcripts.txt'
2025-10-28T22:39:31,347   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/18_transcripts.txt'
2025-10-28T22:39:31,353   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/19_transcripts.txt'
2025-10-28T22:39:31,389   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/1_transcripts.txt'
2025-10-28T22:39:31,399   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/20_transcripts.txt'
2025-10-28T22:39:31,417   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/2_transcripts.txt'
2025-10-28T22:39:31,439   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/3_transcripts.txt'
2025-10-28T22:39:31,457   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/4_transcripts.txt'
2025-10-28T22:39:31,473   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/5_transcripts.txt'
2025-10-28T22:39:31,485   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/6_transcripts.txt'
2025-10-28T22:39:31,502   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/7_transcripts.txt'
2025-10-28T22:39:31,517   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/8_transcripts.txt'
2025-10-28T22:39:31,528   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/9_transcripts.txt'
2025-10-28T22:39:31,530   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/MT_transcripts.txt'
2025-10-28T22:39:31,540   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/X_transcripts.txt'
2025-10-28T22:39:31,542   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn6/Y_transcripts.txt'
2025-10-28T22:39:31,575   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/10_transcripts.txt'
2025-10-28T22:39:31,589   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/11_transcripts.txt'
2025-10-28T22:39:31,603   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/12_transcripts.txt'
2025-10-28T22:39:31,617   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/13_transcripts.txt'
2025-10-28T22:39:31,633   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/14_transcripts.txt'
2025-10-28T22:39:31,648   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/15_transcripts.txt'
2025-10-28T22:39:31,661   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/16_transcripts.txt'
2025-10-28T22:39:31,675   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/17_transcripts.txt'
2025-10-28T22:39:31,687   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/18_transcripts.txt'
2025-10-28T22:39:31,698   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/19_transcripts.txt'
2025-10-28T22:39:31,758   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/1_transcripts.txt'
2025-10-28T22:39:31,775   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/20_transcripts.txt'
2025-10-28T22:39:31,807   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/2_transcripts.txt'
2025-10-28T22:39:31,844   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/3_transcripts.txt'
2025-10-28T22:39:31,875   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/4_transcripts.txt'
2025-10-28T22:39:31,905   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/5_transcripts.txt'
2025-10-28T22:39:31,927   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/6_transcripts.txt'
2025-10-28T22:39:31,956   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/7_transcripts.txt'
2025-10-28T22:39:31,982   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/8_transcripts.txt'
2025-10-28T22:39:32,001   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/9_transcripts.txt'
2025-10-28T22:39:32,003   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/MT_transcripts.txt'
2025-10-28T22:39:32,022   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/X_transcripts.txt'
2025-10-28T22:39:32,025   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/rn7/Y_transcripts.txt'
2025-10-28T22:39:32,027   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/III_transcripts.txt'
2025-10-28T22:39:32,031   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/II_transcripts.txt'
2025-10-28T22:39:32,037   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IV_transcripts.txt'
2025-10-28T22:39:32,040   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/IX_transcripts.txt'
2025-10-28T22:39:32,041   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/I_transcripts.txt'
2025-10-28T22:39:32,043   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/M_transcripts.txt'
2025-10-28T22:39:32,045   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VIII_transcripts.txt'
2025-10-28T22:39:32,050   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VII_transcripts.txt'
2025-10-28T22:39:32,052   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/VI_transcripts.txt'
2025-10-28T22:39:32,055   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/V_transcripts.txt'
2025-10-28T22:39:32,059   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIII_transcripts.txt'
2025-10-28T22:39:32,063   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XII_transcripts.txt'
2025-10-28T22:39:32,067   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XIV_transcripts.txt'
2025-10-28T22:39:32,070   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XI_transcripts.txt'
2025-10-28T22:39:32,074   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XVI_transcripts.txt'
2025-10-28T22:39:32,079   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/XV_transcripts.txt'
2025-10-28T22:39:32,082   adding 'SigProfilerMatrixGenerator/references/chromosomes/transcripts/yeast/X_transcripts.txt'
2025-10-28T22:39:32,084   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/__init__.py'
2025-10-28T22:39:32,091   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/10_BED_TSB.txt'
2025-10-28T22:39:32,102   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/11_BED_TSB.txt'
2025-10-28T22:39:32,111   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/12_BED_TSB.txt'
2025-10-28T22:39:32,114   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/13_BED_TSB.txt'
2025-10-28T22:39:32,119   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/14_BED_TSB.txt'
2025-10-28T22:39:32,123   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/15_BED_TSB.txt'
2025-10-28T22:39:32,130   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/16_BED_TSB.txt'
2025-10-28T22:39:32,139   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/17_BED_TSB.txt'
2025-10-28T22:39:32,142   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/18_BED_TSB.txt'
2025-10-28T22:39:32,153   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/19_BED_TSB.txt'
2025-10-28T22:39:32,174   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/1_BED_TSB.txt'
2025-10-28T22:39:32,179   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/20_BED_TSB.txt'
2025-10-28T22:39:32,181   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/21_BED_TSB.txt'
2025-10-28T22:39:32,184   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/22_BED_TSB.txt'
2025-10-28T22:39:32,196   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/2_BED_TSB.txt'
2025-10-28T22:39:32,207   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/3_BED_TSB.txt'
2025-10-28T22:39:32,214   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/4_BED_TSB.txt'
2025-10-28T22:39:32,222   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/5_BED_TSB.txt'
2025-10-28T22:39:32,231   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/6_BED_TSB.txt'
2025-10-28T22:39:32,240   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/7_BED_TSB.txt'
2025-10-28T22:39:32,246   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/8_BED_TSB.txt'
2025-10-28T22:39:32,253   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/9_BED_TSB.txt'
2025-10-28T22:39:32,261   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/X_BED_TSB.txt'
2025-10-28T22:39:32,262   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh37/Y_BED_TSB.txt'
2025-10-28T22:39:32,269   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/10_BED_TSB.txt'
2025-10-28T22:39:32,280   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/11_BED_TSB.txt'
2025-10-28T22:39:32,289   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/12_BED_TSB.txt'
2025-10-28T22:39:32,291   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/13_BED_TSB.txt'
2025-10-28T22:39:32,296   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/14_BED_TSB.txt'
2025-10-28T22:39:32,307   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/15_BED_TSB.txt'
2025-10-28T22:39:32,313   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/16_BED_TSB.txt'
2025-10-28T22:39:32,323   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/17_BED_TSB.txt'
2025-10-28T22:39:32,325   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/18_BED_TSB.txt'
2025-10-28T22:39:32,336   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/19_BED_TSB.txt'
2025-10-28T22:39:32,357   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/1_BED_TSB.txt'
2025-10-28T22:39:32,361   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/20_BED_TSB.txt'
2025-10-28T22:39:32,363   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/21_BED_TSB.txt'
2025-10-28T22:39:32,366   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/22_BED_TSB.txt'
2025-10-28T22:39:32,378   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/2_BED_TSB.txt'
2025-10-28T22:39:32,389   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/3_BED_TSB.txt'
2025-10-28T22:39:32,395   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/4_BED_TSB.txt'
2025-10-28T22:39:32,403   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/5_BED_TSB.txt'
2025-10-28T22:39:32,412   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/6_BED_TSB.txt'
2025-10-28T22:39:32,421   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/7_BED_TSB.txt'
2025-10-28T22:39:32,426   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/8_BED_TSB.txt'
2025-10-28T22:39:32,433   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/9_BED_TSB.txt'
2025-10-28T22:39:32,441   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/X_BED_TSB.txt'
2025-10-28T22:39:32,443   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/GRCh38/Y_BED_TSB.txt'
2025-10-28T22:39:32,465   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/III_BED_TSB.txt'
2025-10-28T22:39:32,496   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/II_BED_TSB.txt'
2025-10-28T22:39:32,527   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/IV_BED_TSB.txt'
2025-10-28T22:39:32,554   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/I_BED_TSB.txt'
2025-10-28T22:39:32,556   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/MtDNA_BED_TSB.txt'
2025-10-28T22:39:32,604   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/V_BED_TSB.txt'
2025-10-28T22:39:32,632   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/c_elegans/X_BED_TSB.txt'
2025-10-28T22:39:32,638   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/10_BED_TSB.txt'
2025-10-28T22:39:32,642   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/11_BED_TSB.txt'
2025-10-28T22:39:32,646   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/12_BED_TSB.txt'
2025-10-28T22:39:32,650   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/13_BED_TSB.txt'
2025-10-28T22:39:32,653   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/14_BED_TSB.txt'
2025-10-28T22:39:32,657   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/15_BED_TSB.txt'
2025-10-28T22:39:32,660   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/16_BED_TSB.txt'
2025-10-28T22:39:32,665   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/17_BED_TSB.txt'
2025-10-28T22:39:32,671   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/18_BED_TSB.txt'
2025-10-28T22:39:32,673   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/19_BED_TSB.txt'
2025-10-28T22:39:32,685   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/1_BED_TSB.txt'
2025-10-28T22:39:32,693   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/20_BED_TSB.txt'
2025-10-28T22:39:32,696   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/21_BED_TSB.txt'
2025-10-28T22:39:32,699   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/22_BED_TSB.txt'
2025-10-28T22:39:32,701   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/23_BED_TSB.txt'
2025-10-28T22:39:32,705   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/24_BED_TSB.txt'
2025-10-28T22:39:32,708   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/25_BED_TSB.txt'
2025-10-28T22:39:32,712   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/26_BED_TSB.txt'
2025-10-28T22:39:32,716   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/27_BED_TSB.txt'
2025-10-28T22:39:32,719   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/28_BED_TSB.txt'
2025-10-28T22:39:32,720   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/29_BED_TSB.txt'
2025-10-28T22:39:32,726   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/2_BED_TSB.txt'
2025-10-28T22:39:32,730   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/30_BED_TSB.txt'
2025-10-28T22:39:32,732   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/31_BED_TSB.txt'
2025-10-28T22:39:32,734   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/32_BED_TSB.txt'
2025-10-28T22:39:32,736   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/33_BED_TSB.txt'
2025-10-28T22:39:32,739   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/34_BED_TSB.txt'
2025-10-28T22:39:32,741   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/35_BED_TSB.txt'
2025-10-28T22:39:32,742   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/36_BED_TSB.txt'
2025-10-28T22:39:32,745   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/37_BED_TSB.txt'
2025-10-28T22:39:32,747   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/38_BED_TSB.txt'
2025-10-28T22:39:32,751   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/3_BED_TSB.txt'
2025-10-28T22:39:32,755   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/4_BED_TSB.txt'
2025-10-28T22:39:32,763   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/5_BED_TSB.txt'
2025-10-28T22:39:32,770   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/6_BED_TSB.txt'
2025-10-28T22:39:32,777   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/7_BED_TSB.txt'
2025-10-28T22:39:32,794   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/8_BED_TSB.txt'
2025-10-28T22:39:32,804   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/9_BED_TSB.txt'
2025-10-28T22:39:32,811   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/dog/X_BED_TSB.txt'
2025-10-28T22:39:32,821   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/10_BED_TSB.txt'
2025-10-28T22:39:32,836   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/11_BED_TSB.txt'
2025-10-28T22:39:32,841   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/12_BED_TSB.txt'
2025-10-28T22:39:32,848   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/13_BED_TSB.txt'
2025-10-28T22:39:32,855   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/14_BED_TSB.txt'
2025-10-28T22:39:32,862   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/15_BED_TSB.txt'
2025-10-28T22:39:32,867   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/16_BED_TSB.txt'
2025-10-28T22:39:32,876   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/17_BED_TSB.txt'
2025-10-28T22:39:32,880   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/18_BED_TSB.txt'
2025-10-28T22:39:32,885   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/19_BED_TSB.txt'
2025-10-28T22:39:32,897   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/1_BED_TSB.txt'
2025-10-28T22:39:32,916   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/2_BED_TSB.txt'
2025-10-28T22:39:32,925   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/3_BED_TSB.txt'
2025-10-28T22:39:32,939   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/4_BED_TSB.txt'
2025-10-28T22:39:32,952   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/5_BED_TSB.txt'
2025-10-28T22:39:32,962   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/6_BED_TSB.txt'
2025-10-28T22:39:32,982   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/7_BED_TSB.txt'
2025-10-28T22:39:32,991   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/8_BED_TSB.txt'
2025-10-28T22:39:33,002   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/9_BED_TSB.txt'
2025-10-28T22:39:33,011   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/X_BED_TSB.txt'
2025-10-28T22:39:33,013   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm10/Y_BED_TSB.txt'
2025-10-28T22:39:33,023   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/10_BED_TSB.txt'
2025-10-28T22:39:33,037   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/11_BED_TSB.txt'
2025-10-28T22:39:33,043   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/12_BED_TSB.txt'
2025-10-28T22:39:33,049   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/13_BED_TSB.txt'
2025-10-28T22:39:33,056   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/14_BED_TSB.txt'
2025-10-28T22:39:33,063   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/15_BED_TSB.txt'
2025-10-28T22:39:33,068   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/16_BED_TSB.txt'
2025-10-28T22:39:33,077   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/17_BED_TSB.txt'
2025-10-28T22:39:33,081   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/18_BED_TSB.txt'
2025-10-28T22:39:33,086   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/19_BED_TSB.txt'
2025-10-28T22:39:33,098   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/1_BED_TSB.txt'
2025-10-28T22:39:33,117   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/2_BED_TSB.txt'
2025-10-28T22:39:33,126   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/3_BED_TSB.txt'
2025-10-28T22:39:33,140   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/4_BED_TSB.txt'
2025-10-28T22:39:33,152   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/5_BED_TSB.txt'
2025-10-28T22:39:33,163   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/6_BED_TSB.txt'
2025-10-28T22:39:33,183   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/7_BED_TSB.txt'
2025-10-28T22:39:33,193   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/8_BED_TSB.txt'
2025-10-28T22:39:33,204   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/9_BED_TSB.txt'
2025-10-28T22:39:33,212   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/X_BED_TSB.txt'
2025-10-28T22:39:33,214   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm39/Y_BED_TSB.txt'
2025-10-28T22:39:33,224   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/10_BED_TSB.txt'
2025-10-28T22:39:33,238   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/11_BED_TSB.txt'
2025-10-28T22:39:33,244   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/12_BED_TSB.txt'
2025-10-28T22:39:33,252   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/13_BED_TSB.txt'
2025-10-28T22:39:33,259   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/14_BED_TSB.txt'
2025-10-28T22:39:33,265   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/15_BED_TSB.txt'
2025-10-28T22:39:33,271   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/16_BED_TSB.txt'
2025-10-28T22:39:33,279   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/17_BED_TSB.txt'
2025-10-28T22:39:33,284   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/18_BED_TSB.txt'
2025-10-28T22:39:33,289   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/19_BED_TSB.txt'
2025-10-28T22:39:33,301   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/1_BED_TSB.txt'
2025-10-28T22:39:33,320   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/2_BED_TSB.txt'
2025-10-28T22:39:33,331   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/3_BED_TSB.txt'
2025-10-28T22:39:33,345   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/4_BED_TSB.txt'
2025-10-28T22:39:33,358   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/5_BED_TSB.txt'
2025-10-28T22:39:33,369   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/6_BED_TSB.txt'
2025-10-28T22:39:33,390   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/7_BED_TSB.txt'
2025-10-28T22:39:33,400   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/8_BED_TSB.txt'
2025-10-28T22:39:33,411   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/9_BED_TSB.txt'
2025-10-28T22:39:33,420   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/X_BED_TSB.txt'
2025-10-28T22:39:33,421   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/mm9/Y_BED_TSB.txt'
2025-10-28T22:39:33,437   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/10_BED_TSB.txt'
2025-10-28T22:39:33,442   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/11_BED_TSB.txt'
2025-10-28T22:39:33,447   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/12_BED_TSB.txt'
2025-10-28T22:39:33,452   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/13_BED_TSB.txt'
2025-10-28T22:39:33,457   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/14_BED_TSB.txt'
2025-10-28T22:39:33,463   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/15_BED_TSB.txt'
2025-10-28T22:39:33,468   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/16_BED_TSB.txt'
2025-10-28T22:39:33,473   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/17_BED_TSB.txt'
2025-10-28T22:39:33,476   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/18_BED_TSB.txt'
2025-10-28T22:39:33,481   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/19_BED_TSB.txt'
2025-10-28T22:39:33,514   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/1_BED_TSB.txt'
2025-10-28T22:39:33,519   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/20_BED_TSB.txt'
2025-10-28T22:39:33,533   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/2_BED_TSB.txt'
2025-10-28T22:39:33,552   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/3_BED_TSB.txt'
2025-10-28T22:39:33,566   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/4_BED_TSB.txt'
2025-10-28T22:39:33,580   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/5_BED_TSB.txt'
2025-10-28T22:39:33,589   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/6_BED_TSB.txt'
2025-10-28T22:39:33,602   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/7_BED_TSB.txt'
2025-10-28T22:39:33,614   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/8_BED_TSB.txt'
2025-10-28T22:39:33,621   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/9_BED_TSB.txt'
2025-10-28T22:39:33,623   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/MT_BED_TSB.txt'
2025-10-28T22:39:33,630   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/X_BED_TSB.txt'
2025-10-28T22:39:33,632   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn6/Y_BED_TSB.txt'
2025-10-28T22:39:33,650   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/10_BED_TSB.txt'
2025-10-28T22:39:33,656   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/11_BED_TSB.txt'
2025-10-28T22:39:33,664   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/12_BED_TSB.txt'
2025-10-28T22:39:33,671   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/13_BED_TSB.txt'
2025-10-28T22:39:33,679   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/14_BED_TSB.txt'
2025-10-28T22:39:33,686   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/15_BED_TSB.txt'
2025-10-28T22:39:33,693   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/16_BED_TSB.txt'
2025-10-28T22:39:33,700   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/17_BED_TSB.txt'
2025-10-28T22:39:33,705   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/18_BED_TSB.txt'
2025-10-28T22:39:33,711   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/19_BED_TSB.txt'
2025-10-28T22:39:33,753   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/1_BED_TSB.txt'
2025-10-28T22:39:33,760   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/20_BED_TSB.txt'
2025-10-28T22:39:33,780   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/2_BED_TSB.txt'
2025-10-28T22:39:33,804   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/3_BED_TSB.txt'
2025-10-28T22:39:33,824   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/4_BED_TSB.txt'
2025-10-28T22:39:33,842   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/5_BED_TSB.txt'
2025-10-28T22:39:33,855   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/6_BED_TSB.txt'
2025-10-28T22:39:33,872   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/7_BED_TSB.txt'
2025-10-28T22:39:33,887   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/8_BED_TSB.txt'
2025-10-28T22:39:33,897   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/9_BED_TSB.txt'
2025-10-28T22:39:33,898   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/MT_BED_TSB.txt'
2025-10-28T22:39:33,911   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/X_BED_TSB.txt'
2025-10-28T22:39:33,912   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/rn7/Y_BED_TSB.txt'
2025-10-28T22:39:33,915   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/III_BED_TSB.txt'
2025-10-28T22:39:33,918   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/II_BED_TSB.txt'
2025-10-28T22:39:33,925   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IV_BED_TSB.txt'
2025-10-28T22:39:33,927   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/IX_BED_TSB.txt'
2025-10-28T22:39:33,929   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/I_BED_TSB.txt'
2025-10-28T22:39:33,931   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VIII_BED_TSB.txt'
2025-10-28T22:39:33,935   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VII_BED_TSB.txt'
2025-10-28T22:39:33,938   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/VI_BED_TSB.txt'
2025-10-28T22:39:33,940   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/V_BED_TSB.txt'
2025-10-28T22:39:33,944   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIII_BED_TSB.txt'
2025-10-28T22:39:33,948   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XII_BED_TSB.txt'
2025-10-28T22:39:33,951   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XIV_BED_TSB.txt'
2025-10-28T22:39:33,953   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XI_BED_TSB.txt'
2025-10-28T22:39:33,957   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XVI_BED_TSB.txt'
2025-10-28T22:39:33,961   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/XV_BED_TSB.txt'
2025-10-28T22:39:33,965   adding 'SigProfilerMatrixGenerator/references/chromosomes/tsb_BED/yeast/X_BED_TSB.txt'
2025-10-28T22:39:33,968   adding 'SigProfilerMatrixGenerator/scripts/CNVMatrixGenerator.py'
2025-10-28T22:39:33,979   adding 'SigProfilerMatrixGenerator/scripts/MutationMatrixGenerator.py'
2025-10-28T22:39:33,985   adding 'SigProfilerMatrixGenerator/scripts/SVMatrixGenerator.py'
2025-10-28T22:39:34,003   adding 'SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGeneratorFunc.py'
2025-10-28T22:39:34,005   adding 'SigProfilerMatrixGenerator/scripts/SigProfilerMatrixGenerator_CLI.py'
2025-10-28T22:39:34,006   adding 'SigProfilerMatrixGenerator/scripts/__init__.py'
2025-10-28T22:39:34,008   adding 'SigProfilerMatrixGenerator/scripts/convert_input_to_simple_files.py'
2025-10-28T22:39:34,010   adding 'SigProfilerMatrixGenerator/scripts/ref_install.py'
2025-10-28T22:39:34,013   adding 'SigProfilerMatrixGenerator/scripts/reference_genome_manager.py'
2025-10-28T22:39:34,015   adding 'SigProfilerMatrixGenerator/scripts/save_chrom_strings.py'
2025-10-28T22:39:34,016   adding 'SigProfilerMatrixGenerator/scripts/save_chrom_tsb_separate.py'
2025-10-28T22:39:34,019   adding 'SigProfilerMatrixGenerator/scripts/save_context_distribution.py'
2025-10-28T22:39:34,021   adding 'SigProfilerMatrixGenerator/scripts/save_tsb_192.py'
2025-10-28T22:39:34,024   adding 'SigProfilerMatrixGenerator/scripts/vcfToBedpe.py'
2025-10-28T22:39:34,043   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_3072.txt'
2025-10-28T22:39:34,044   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh37_bench_orig_96.txt'
2025-10-28T22:39:34,064   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_3072.txt'
2025-10-28T22:39:34,066   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/GRCh38_bench_orig_96.txt'
2025-10-28T22:39:34,067   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/__init__.py'
2025-10-28T22:39:34,086   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_3072.txt'
2025-10-28T22:39:34,088   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm10_bench_orig_96.txt'
2025-10-28T22:39:34,107   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_3072.txt'
2025-10-28T22:39:34,109   adding 'SigProfilerMatrixGenerator/scripts/Benchmark/mm9_bench_orig_96.txt'
2025-10-28T22:39:34,112   adding 'sigprofilermatrixgenerator-1.3.6.dist-info/licenses/LICENSE'
2025-10-28T22:39:34,114   adding 'sigprofilermatrixgenerator-1.3.6.dist-info/METADATA'
2025-10-28T22:39:34,116   adding 'sigprofilermatrixgenerator-1.3.6.dist-info/WHEEL'
2025-10-28T22:39:34,117   adding 'sigprofilermatrixgenerator-1.3.6.dist-info/entry_points.txt'
2025-10-28T22:39:34,117   adding 'sigprofilermatrixgenerator-1.3.6.dist-info/top_level.txt'
2025-10-28T22:39:34,136   adding 'sigprofilermatrixgenerator-1.3.6.dist-info/RECORD'
2025-10-28T22:39:34,639   removing build/bdist.linux-armv7l/wheel
2025-10-28T22:39:35,019   Building wheel for sigprofilermatrixgenerator (pyproject.toml): finished with status 'done'
2025-10-28T22:39:36,231   Created wheel for sigprofilermatrixgenerator: filename=sigprofilermatrixgenerator-1.3.6-py3-none-any.whl size=47475214 sha256=d474cd5934cd1f64fd0b7c6034e05d295f7b0d12954f875ed8e6921524447d40
2025-10-28T22:39:36,233   Stored in directory: /tmp/pip-ephem-wheel-cache-bxdeyzhd/wheels/b8/f7/f2/91a4473a5f02cdb2bf3af842147efa2c10540e154a52f15250
2025-10-28T22:39:36,290 Successfully built sigprofilermatrixgenerator
2025-10-28T22:39:38,052 Removed build tracker: '/tmp/pip-build-tracker-ka7n6mpn'