2025-10-29T00:37:38,354 Created temporary directory: /tmp/pip-ephem-wheel-cache-2euoi6cc
2025-10-29T00:37:38,356 Created temporary directory: /tmp/pip-build-tracker-4uarmtm0
2025-10-29T00:37:38,357 Initialized build tracking at /tmp/pip-build-tracker-4uarmtm0
2025-10-29T00:37:38,357 Created build tracker: /tmp/pip-build-tracker-4uarmtm0
2025-10-29T00:37:38,358 Entered build tracker: /tmp/pip-build-tracker-4uarmtm0
2025-10-29T00:37:38,359 Created temporary directory: /tmp/pip-wheel-7x4_4qtc
2025-10-29T00:37:38,362 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-29T00:37:38,364 Created temporary directory: /tmp/pip-ephem-wheel-cache-v_j1tlym
2025-10-29T00:37:38,386 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-29T00:37:38,389 2 location(s) to search for versions of bioscons:
2025-10-29T00:37:38,389 * https://pypi.org/simple/bioscons/
2025-10-29T00:37:38,389 * https://www.piwheels.org/simple/bioscons/
2025-10-29T00:37:38,390 Fetching project page and analyzing links: https://pypi.org/simple/bioscons/
2025-10-29T00:37:38,390 Getting page https://pypi.org/simple/bioscons/
2025-10-29T00:37:38,392 Found index url https://pypi.org/simple
2025-10-29T00:37:38,605 Fetched page https://pypi.org/simple/bioscons/ as application/vnd.pypi.simple.v1+json
2025-10-29T00:37:38,609   Found link https://files.pythonhosted.org/packages/cc/51/188f9b317426159fe3a956afbfd3c072ccc15bc2def44792e9a719c72945/bioscons-0.5.tar.gz (from https://pypi.org/simple/bioscons/), version: 0.5
2025-10-29T00:37:38,609   Skipping link: No binaries permitted for bioscons: https://files.pythonhosted.org/packages/ed/03/156b29a20253aacb2612b85689d3eedabb564af02ecf1e01db7e44c2f8a8/bioscons-0.6-py2-none-any.whl (from https://pypi.org/simple/bioscons/)
2025-10-29T00:37:38,610   Found link https://files.pythonhosted.org/packages/ce/df/f1c3ae8788fe00800d3a392efd6830c5b3b91630ce5588097cf9c1bb84d3/bioscons-0.6.tar.gz (from https://pypi.org/simple/bioscons/), version: 0.6
2025-10-29T00:37:38,611   Skipping link: No binaries permitted for bioscons: https://files.pythonhosted.org/packages/3b/54/7ad838081d20f4e1f754f345fdaf60045fce92235394ff5281d18169447e/bioscons-0.7-py2-none-any.whl (from https://pypi.org/simple/bioscons/)
2025-10-29T00:37:38,611   Found link https://files.pythonhosted.org/packages/36/4b/2a96dd49bbf7ebc8ae6c36b4ff297f42eb8f0f9bfaea4c58c6c0efa102cf/bioscons-0.7.tar.gz (from https://pypi.org/simple/bioscons/), version: 0.7
2025-10-29T00:37:38,612   Skipping link: No binaries permitted for bioscons: https://files.pythonhosted.org/packages/1f/cd/1d06aac9431bbebab43364794f317077ed5b098375665a6706e6fe5021c2/bioscons-0.7.1-py2-none-any.whl (from https://pypi.org/simple/bioscons/)
2025-10-29T00:37:38,613   Found link https://files.pythonhosted.org/packages/73/f3/ba6f9923b82fe05b002f29b592f7dece569d1c337c30305e195d8c719faa/bioscons-0.7.1.tar.gz (from https://pypi.org/simple/bioscons/), version: 0.7.1
2025-10-29T00:37:38,613   Skipping link: No binaries permitted for bioscons: https://files.pythonhosted.org/packages/85/cc/4c043835c1931911f453cb7d8a280b59f09b460e5b735d59fbe6179ddda4/bioscons-0.8-py2-none-any.whl (from https://pypi.org/simple/bioscons/)
2025-10-29T00:37:38,614   Found link https://files.pythonhosted.org/packages/f4/1d/3c4d9f4103c35eed5cf87f068f7785c60faed7a6330a0696f029a7a4da01/bioscons-0.8.tar.gz (from https://pypi.org/simple/bioscons/), version: 0.8
2025-10-29T00:37:38,615   Skipping link: No binaries permitted for bioscons: https://files.pythonhosted.org/packages/0b/3f/1e0afe5de78c16864070cdf9189046e0adc1b140e1c3aaa29a3ad40b7687/bioscons-0.8.1-py2-none-any.whl (from https://pypi.org/simple/bioscons/)
2025-10-29T00:37:38,615   Found link https://files.pythonhosted.org/packages/0c/67/38e7405ab95939802c1fd14299b8efa017daccb420d5bdc82199321463d8/bioscons-0.8.1.tar.gz (from https://pypi.org/simple/bioscons/), version: 0.8.1
2025-10-29T00:37:38,616   Skipping link: No binaries permitted for bioscons: https://files.pythonhosted.org/packages/50/f4/dab67ce0f7d9c7744004f507d4ec5b759c55ebe9e1c757fbaef31f6b01f2/bioscons-0.9.0-py3-none-any.whl (from https://pypi.org/simple/bioscons/)
2025-10-29T00:37:38,617   Found link https://files.pythonhosted.org/packages/14/51/951e2f5b3e55263caaf6fbc9393d842f7fe7b5942aa24504d136d56e5ebe/bioscons-0.9.0.tar.gz (from https://pypi.org/simple/bioscons/), version: 0.9.0
2025-10-29T00:37:38,618   Skipping link: No binaries permitted for bioscons: https://files.pythonhosted.org/packages/c1/51/2ebc22111c7120d7324bc88252f45d1bf7d57430ddd7df35af68b13b0ab4/bioscons-1.1.0-py3-none-any.whl (from https://pypi.org/simple/bioscons/) (requires-python:>=3.5)
2025-10-29T00:37:38,619   Found link https://files.pythonhosted.org/packages/dd/6d/d8e57f1f2217398593158a9d61bc00fb73270d7f8d809bcfc350be30623c/bioscons-1.1.0.tar.gz (from https://pypi.org/simple/bioscons/) (requires-python:>=3.5), version: 1.1.0
2025-10-29T00:37:38,620 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioscons/
2025-10-29T00:37:38,620 Getting page https://www.piwheels.org/simple/bioscons/
2025-10-29T00:37:38,621 Found index url https://www.piwheels.org/simple
2025-10-29T00:37:38,825 Fetched page https://www.piwheels.org/simple/bioscons/ as text/html
2025-10-29T00:37:38,829   Skipping link: No binaries permitted for bioscons: https://archive1.piwheels.org/simple/bioscons/bioscons-0.9.0-py3-none-any.whl#sha256=53f1b76c89b21841df1a3ec95faec6009a1b4b3a2904230cb73a669beb550f35 (from https://www.piwheels.org/simple/bioscons/)
2025-10-29T00:37:38,829   Skipping link: No binaries permitted for bioscons: https://archive1.piwheels.org/simple/bioscons/bioscons-0.8.1-py3-none-any.whl#sha256=fdd2a33fb8c1ac32018bf5529585cfc08be801743863ef9a4f65333ad7396d52 (from https://www.piwheels.org/simple/bioscons/)
2025-10-29T00:37:38,830   Skipping link: No binaries permitted for bioscons: https://archive1.piwheels.org/simple/bioscons/bioscons-0.8-py3-none-any.whl#sha256=5d4b364e3225959cd88cc81656dcb7e5716f3e8e047f2281e8de3028a6ff0ced (from https://www.piwheels.org/simple/bioscons/)
2025-10-29T00:37:38,830   Skipping link: No binaries permitted for bioscons: https://archive1.piwheels.org/simple/bioscons/bioscons-0.7.1-py3-none-any.whl#sha256=6acba62977930da316687d6b4c989298c013faf4eb33f90983a63b71a31e6207 (from https://www.piwheels.org/simple/bioscons/)
2025-10-29T00:37:38,831   Skipping link: No binaries permitted for bioscons: https://archive1.piwheels.org/simple/bioscons/bioscons-0.7-py3-none-any.whl#sha256=f17df43bdd511bf43706530568f8076960f206e704f9570a8e55f473c6c3a87b (from https://www.piwheels.org/simple/bioscons/)
2025-10-29T00:37:38,832   Skipping link: No binaries permitted for bioscons: https://archive1.piwheels.org/simple/bioscons/bioscons-0.6-py3-none-any.whl#sha256=073dca1cc8fb13a0820db436ad046859aa1efbdc8c954809f2135a85835402bb (from https://www.piwheels.org/simple/bioscons/)
2025-10-29T00:37:38,832   Skipping link: No binaries permitted for bioscons: https://archive1.piwheels.org/simple/bioscons/bioscons-0.5-py3-none-any.whl#sha256=7f3e5ac1deb46b8ded6cd515edf6dc260206c45c26e66d8597bc68e4127d0339 (from https://www.piwheels.org/simple/bioscons/)
2025-10-29T00:37:38,833 Skipping link: not a file: https://www.piwheels.org/simple/bioscons/
2025-10-29T00:37:38,834 Skipping link: not a file: https://pypi.org/simple/bioscons/
2025-10-29T00:37:38,853 Given no hashes to check 1 links for project 'bioscons': discarding no candidates
2025-10-29T00:37:38,871 Collecting bioscons==1.1.0
2025-10-29T00:37:38,874   Created temporary directory: /tmp/pip-unpack-0e7tfuka
2025-10-29T00:37:39,022   Downloading bioscons-1.1.0.tar.gz (261 kB)
2025-10-29T00:37:39,306   Added bioscons==1.1.0 from https://files.pythonhosted.org/packages/dd/6d/d8e57f1f2217398593158a9d61bc00fb73270d7f8d809bcfc350be30623c/bioscons-1.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-4uarmtm0'
2025-10-29T00:37:39,311   Created temporary directory: /tmp/pip-build-env-cju9ozo6
2025-10-29T00:37:39,316   Installing build dependencies: started
2025-10-29T00:37:39,317   Running command pip subprocess to install build dependencies
2025-10-29T00:37:40,460   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-10-29T00:37:41,041   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-10-29T00:37:41,064   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-10-29T00:37:42,788   Collecting setuptools>=64
2025-10-29T00:37:42,873     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-10-29T00:37:43,250   Collecting setuptools-scm>=8
2025-10-29T00:37:43,269     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB)
2025-10-29T00:37:43,455   Collecting packaging>=20
2025-10-29T00:37:43,472     Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB)
2025-10-29T00:37:46,383   Installing collected packages: setuptools, packaging, setuptools-scm
2025-10-29T00:37:50,563     Creating /tmp/pip-build-env-cju9ozo6/overlay/local/bin
2025-10-29T00:37:50,566     changing mode of /tmp/pip-build-env-cju9ozo6/overlay/local/bin/setuptools-scm to 755
2025-10-29T00:37:50,589   Successfully installed packaging-25.0 setuptools-80.9.0 setuptools-scm-9.2.2
2025-10-29T00:37:50,870   Installing build dependencies: finished with status 'done'
2025-10-29T00:37:50,876   Getting requirements to build wheel: started
2025-10-29T00:37:50,877   Running command Getting requirements to build wheel
2025-10-29T00:37:51,641   running egg_info
2025-10-29T00:37:51,649   writing src/bioscons.egg-info/PKG-INFO
2025-10-29T00:37:51,653   writing dependency_links to src/bioscons.egg-info/dependency_links.txt
2025-10-29T00:37:51,655   writing requirements to src/bioscons.egg-info/requires.txt
2025-10-29T00:37:51,657   writing top-level names to src/bioscons.egg-info/top_level.txt
2025-10-29T00:37:51,705   listing git files failed - pretending there aren't any
2025-10-29T00:37:51,711   reading manifest file 'src/bioscons.egg-info/SOURCES.txt'
2025-10-29T00:37:51,726   reading manifest template 'MANIFEST.in'
2025-10-29T00:37:51,728   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-10-29T00:37:51,730   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2025-10-29T00:37:51,731   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-29T00:37:51,732   warning: no previously-included files matching '.git*' found anywhere in distribution
2025-10-29T00:37:51,733   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2025-10-29T00:37:51,735   warning: no previously-included files matching '*.png' found anywhere in distribution
2025-10-29T00:37:51,744   writing manifest file 'src/bioscons.egg-info/SOURCES.txt'
2025-10-29T00:37:51,846   Getting requirements to build wheel: finished with status 'done'
2025-10-29T00:37:51,849   Created temporary directory: /tmp/pip-modern-metadata-zs3vugw0
2025-10-29T00:37:51,852   Preparing metadata (pyproject.toml): started
2025-10-29T00:37:51,853   Running command Preparing metadata (pyproject.toml)
2025-10-29T00:37:52,575   running dist_info
2025-10-29T00:37:52,590   creating /tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info
2025-10-29T00:37:52,591   writing /tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info/PKG-INFO
2025-10-29T00:37:52,595   writing dependency_links to /tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info/dependency_links.txt
2025-10-29T00:37:52,597   writing requirements to /tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info/requires.txt
2025-10-29T00:37:52,598   writing top-level names to /tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info/top_level.txt
2025-10-29T00:37:52,599   writing manifest file '/tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info/SOURCES.txt'
2025-10-29T00:37:52,643   listing git files failed - pretending there aren't any
2025-10-29T00:37:52,648   reading manifest file '/tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info/SOURCES.txt'
2025-10-29T00:37:52,650   reading manifest template 'MANIFEST.in'
2025-10-29T00:37:52,651   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-10-29T00:37:52,652   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2025-10-29T00:37:52,653   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-29T00:37:52,653   warning: no previously-included files matching '.git*' found anywhere in distribution
2025-10-29T00:37:52,654   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2025-10-29T00:37:52,655   warning: no previously-included files matching '*.png' found anywhere in distribution
2025-10-29T00:37:52,657   writing manifest file '/tmp/pip-modern-metadata-zs3vugw0/bioscons.egg-info/SOURCES.txt'
2025-10-29T00:37:52,658   creating '/tmp/pip-modern-metadata-zs3vugw0/bioscons-1.1.0.dist-info'
2025-10-29T00:37:52,783   Preparing metadata (pyproject.toml): finished with status 'done'
2025-10-29T00:37:52,788   Source in /tmp/pip-wheel-7x4_4qtc/bioscons_03fb1f3b66014aeeaf9e266f4d511cfd has version 1.1.0, which satisfies requirement bioscons==1.1.0 from https://files.pythonhosted.org/packages/dd/6d/d8e57f1f2217398593158a9d61bc00fb73270d7f8d809bcfc350be30623c/bioscons-1.1.0.tar.gz
2025-10-29T00:37:52,789   Removed bioscons==1.1.0 from https://files.pythonhosted.org/packages/dd/6d/d8e57f1f2217398593158a9d61bc00fb73270d7f8d809bcfc350be30623c/bioscons-1.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-4uarmtm0'
2025-10-29T00:37:52,794 Created temporary directory: /tmp/pip-unpack-0jyknlj_
2025-10-29T00:37:52,795 Building wheels for collected packages: bioscons
2025-10-29T00:37:52,799   Created temporary directory: /tmp/pip-wheel-a2pcxyug
2025-10-29T00:37:52,800   Destination directory: /tmp/pip-wheel-a2pcxyug
2025-10-29T00:37:52,802   Building wheel for bioscons (pyproject.toml): started
2025-10-29T00:37:52,803   Running command Building wheel for bioscons (pyproject.toml)
2025-10-29T00:37:53,497   running bdist_wheel
2025-10-29T00:37:53,523   running build
2025-10-29T00:37:53,524   running build_py
2025-10-29T00:37:53,532   creating build/lib/bioscons
2025-10-29T00:37:53,535   copying src/bioscons/slurm.py -> build/lib/bioscons
2025-10-29T00:37:53,538   copying src/bioscons/utils.py -> build/lib/bioscons
2025-10-29T00:37:53,540   copying src/bioscons/fast.py -> build/lib/bioscons
2025-10-29T00:37:53,543   copying src/bioscons/__init__.py -> build/lib/bioscons
2025-10-29T00:37:53,545   copying src/bioscons/fileutils.py -> build/lib/bioscons
2025-10-29T00:37:53,547   running egg_info
2025-10-29T00:37:53,562   writing src/bioscons.egg-info/PKG-INFO
2025-10-29T00:37:53,565   writing dependency_links to src/bioscons.egg-info/dependency_links.txt
2025-10-29T00:37:53,567   writing requirements to src/bioscons.egg-info/requires.txt
2025-10-29T00:37:53,568   writing top-level names to src/bioscons.egg-info/top_level.txt
2025-10-29T00:37:53,601   listing git files failed - pretending there aren't any
2025-10-29T00:37:53,606   reading manifest file 'src/bioscons.egg-info/SOURCES.txt'
2025-10-29T00:37:53,613   reading manifest template 'MANIFEST.in'
2025-10-29T00:37:53,615   warning: no previously-included files matching '*.so' found anywhere in distribution
2025-10-29T00:37:53,616   warning: no previously-included files matching '*.pyd' found anywhere in distribution
2025-10-29T00:37:53,617   warning: no previously-included files matching '*.pyc' found anywhere in distribution
2025-10-29T00:37:53,619   warning: no previously-included files matching '.git*' found anywhere in distribution
2025-10-29T00:37:53,620   warning: no previously-included files matching '.DS_Store' found anywhere in distribution
2025-10-29T00:37:53,621   warning: no previously-included files matching '*.png' found anywhere in distribution
2025-10-29T00:37:53,625   writing manifest file 'src/bioscons.egg-info/SOURCES.txt'
2025-10-29T00:37:53,642   installing to build/bdist.linux-armv7l/wheel
2025-10-29T00:37:53,643   running install
2025-10-29T00:37:53,667   running install_lib
2025-10-29T00:37:53,674   creating build/bdist.linux-armv7l/wheel
2025-10-29T00:37:53,677   creating build/bdist.linux-armv7l/wheel/bioscons
2025-10-29T00:37:53,678   copying build/lib/bioscons/slurm.py -> build/bdist.linux-armv7l/wheel/./bioscons
2025-10-29T00:37:53,681   copying build/lib/bioscons/utils.py -> build/bdist.linux-armv7l/wheel/./bioscons
2025-10-29T00:37:53,683   copying build/lib/bioscons/fast.py -> build/bdist.linux-armv7l/wheel/./bioscons
2025-10-29T00:37:53,686   copying build/lib/bioscons/__init__.py -> build/bdist.linux-armv7l/wheel/./bioscons
2025-10-29T00:37:53,688   copying build/lib/bioscons/fileutils.py -> build/bdist.linux-armv7l/wheel/./bioscons
2025-10-29T00:37:53,690   running install_egg_info
2025-10-29T00:37:53,698   Copying src/bioscons.egg-info to build/bdist.linux-armv7l/wheel/./bioscons-1.1.0-py3.11.egg-info
2025-10-29T00:37:53,709   running install_scripts
2025-10-29T00:37:53,717   creating build/bdist.linux-armv7l/wheel/bioscons-1.1.0.dist-info/WHEEL
2025-10-29T00:37:53,720   creating '/tmp/pip-wheel-a2pcxyug/.tmp-my2_u2yy/bioscons-1.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-10-29T00:37:53,723   adding 'bioscons/__init__.py'
2025-10-29T00:37:53,725   adding 'bioscons/fast.py'
2025-10-29T00:37:53,727   adding 'bioscons/fileutils.py'
2025-10-29T00:37:53,729   adding 'bioscons/slurm.py'
2025-10-29T00:37:53,731   adding 'bioscons/utils.py'
2025-10-29T00:37:53,734   adding 'bioscons-1.1.0.dist-info/METADATA'
2025-10-29T00:37:53,735   adding 'bioscons-1.1.0.dist-info/WHEEL'
2025-10-29T00:37:53,736   adding 'bioscons-1.1.0.dist-info/top_level.txt'
2025-10-29T00:37:53,738   adding 'bioscons-1.1.0.dist-info/RECORD'
2025-10-29T00:37:53,739   removing build/bdist.linux-armv7l/wheel
2025-10-29T00:37:53,845   Building wheel for bioscons (pyproject.toml): finished with status 'done'
2025-10-29T00:37:53,850   Created wheel for bioscons: filename=bioscons-1.1.0-py3-none-any.whl size=11377 sha256=c7de0aaa043b5bda36509fc4509edcd75c868caa0bdb511b6fa531e65bc6487c
2025-10-29T00:37:53,851   Stored in directory: /tmp/pip-ephem-wheel-cache-v_j1tlym/wheels/86/d5/0a/536e79c8a77243b735c0ac6796fac47cbea7a8d015dbc606f9
2025-10-29T00:37:53,861 Successfully built bioscons
2025-10-29T00:37:53,865 Removed build tracker: '/tmp/pip-build-tracker-4uarmtm0'