2025-10-29T01:54:06,327 Created temporary directory: /tmp/pip-ephem-wheel-cache-v2aq_ow6 2025-10-29T01:54:06,329 Created temporary directory: /tmp/pip-build-tracker-wzhbs58a 2025-10-29T01:54:06,329 Initialized build tracking at /tmp/pip-build-tracker-wzhbs58a 2025-10-29T01:54:06,330 Created build tracker: /tmp/pip-build-tracker-wzhbs58a 2025-10-29T01:54:06,330 Entered build tracker: /tmp/pip-build-tracker-wzhbs58a 2025-10-29T01:54:06,331 Created temporary directory: /tmp/pip-wheel-lcgh9mfr 2025-10-29T01:54:06,334 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-29T01:54:06,336 Created temporary directory: /tmp/pip-ephem-wheel-cache-8vg_jhw1 2025-10-29T01:54:06,358 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-29T01:54:06,362 2 location(s) to search for versions of sigprofilerassignment: 2025-10-29T01:54:06,362 * https://pypi.org/simple/sigprofilerassignment/ 2025-10-29T01:54:06,362 * https://www.piwheels.org/simple/sigprofilerassignment/ 2025-10-29T01:54:06,362 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2025-10-29T01:54:06,363 Getting page https://pypi.org/simple/sigprofilerassignment/ 2025-10-29T01:54:06,365 Found index url https://pypi.org/simple 2025-10-29T01:54:06,575 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2025-10-29T01:54:06,594 Skipping link: No binaries permitted for sigprofilerassignment: 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2025-10-29T01:54:06,598 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2025-10-29T01:54:06,599 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2025-10-29T01:54:06,599 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2025-10-29T01:54:06,600 Found link 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https://archive1.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2025-10-29T01:54:06,870 Skipping link: No binaries permitted for sigprofilerassignment: https://archive1.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2025-10-29T01:54:06,871 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2025-10-29T01:54:06,872 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2025-10-29T01:54:06,896 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2025-10-29T01:54:06,914 Collecting sigprofilerassignment==1.0.2 2025-10-29T01:54:06,917 Created temporary directory: /tmp/pip-unpack-3q391lrg 2025-10-29T01:54:07,128 Downloading sigprofilerassignment-1.0.2.tar.gz (5.4 MB) 2025-10-29T01:54:08,935 Added sigprofilerassignment==1.0.2 from https://files.pythonhosted.org/packages/17/00/71d3b5e8d88a5ee86e4e3b350d51dc46343ef44555a03880cd13cfdc3417/sigprofilerassignment-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-wzhbs58a' 2025-10-29T01:54:08,940 Created temporary directory: /tmp/pip-build-env-fo8nsd_m 2025-10-29T01:54:08,945 Installing build dependencies: started 2025-10-29T01:54:08,946 Running command pip subprocess to install build dependencies 2025-10-29T01:54:10,122 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-29T01:54:10,699 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-29T01:54:10,723 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-29T01:54:12,458 Collecting setuptools>=61 2025-10-29T01:54:12,554 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-29T01:54:12,847 Collecting wheel 2025-10-29T01:54:12,864 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-10-29T01:54:13,000 Collecting build 2025-10-29T01:54:13,016 Using cached https://www.piwheels.org/simple/build/build-1.3.0-py3-none-any.whl (23 kB) 2025-10-29T01:54:13,233 Collecting packaging>=19.1 2025-10-29T01:54:13,254 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-29T01:54:13,320 Collecting pyproject_hooks 2025-10-29T01:54:13,334 Using cached https://www.piwheels.org/simple/pyproject-hooks/pyproject_hooks-1.2.0-py3-none-any.whl (10 kB) 2025-10-29T01:54:16,294 Installing collected packages: wheel, setuptools, pyproject_hooks, packaging, build 2025-10-29T01:54:16,547 Creating /tmp/pip-build-env-fo8nsd_m/overlay/local/bin 2025-10-29T01:54:16,550 changing mode of /tmp/pip-build-env-fo8nsd_m/overlay/local/bin/wheel to 755 2025-10-29T01:54:20,666 changing mode of /tmp/pip-build-env-fo8nsd_m/overlay/local/bin/pyproject-build to 755 2025-10-29T01:54:20,699 Successfully installed build-1.3.0 packaging-25.0 pyproject_hooks-1.2.0 setuptools-80.9.0 wheel-0.45.1 2025-10-29T01:54:20,980 Installing build dependencies: finished with status 'done' 2025-10-29T01:54:20,986 Getting requirements to build wheel: started 2025-10-29T01:54:20,988 Running command Getting requirements to build wheel 2025-10-29T01:54:21,619 running egg_info 2025-10-29T01:54:21,626 writing SigProfilerAssignment.egg-info/PKG-INFO 2025-10-29T01:54:21,630 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2025-10-29T01:54:21,632 writing entry points to SigProfilerAssignment.egg-info/entry_points.txt 2025-10-29T01:54:21,634 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2025-10-29T01:54:21,635 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2025-10-29T01:54:21,666 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2025-10-29T01:54:21,702 reading manifest template 'MANIFEST.in' 2025-10-29T01:54:21,718 adding license file 'LICENSE.txt' 2025-10-29T01:54:21,729 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2025-10-29T01:54:21,818 Getting requirements to build wheel: finished with status 'done' 2025-10-29T01:54:21,821 Created temporary directory: /tmp/pip-modern-metadata-694h9am3 2025-10-29T01:54:21,824 Preparing metadata (pyproject.toml): started 2025-10-29T01:54:21,825 Running command Preparing metadata (pyproject.toml) 2025-10-29T01:54:22,402 running dist_info 2025-10-29T01:54:22,415 creating /tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info 2025-10-29T01:54:22,416 writing /tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/PKG-INFO 2025-10-29T01:54:22,421 writing dependency_links to /tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/dependency_links.txt 2025-10-29T01:54:22,423 writing entry points to /tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/entry_points.txt 2025-10-29T01:54:22,425 writing requirements to /tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/requires.txt 2025-10-29T01:54:22,426 writing top-level names to /tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/top_level.txt 2025-10-29T01:54:22,428 writing manifest file '/tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/SOURCES.txt' 2025-10-29T01:54:22,456 reading manifest file '/tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/SOURCES.txt' 2025-10-29T01:54:22,458 reading manifest template 'MANIFEST.in' 2025-10-29T01:54:22,470 adding license file 'LICENSE.txt' 2025-10-29T01:54:22,478 writing manifest file '/tmp/pip-modern-metadata-694h9am3/SigProfilerAssignment.egg-info/SOURCES.txt' 2025-10-29T01:54:22,479 creating '/tmp/pip-modern-metadata-694h9am3/sigprofilerassignment-1.0.2.dist-info' 2025-10-29T01:54:22,620 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-29T01:54:22,626 Source in /tmp/pip-wheel-lcgh9mfr/sigprofilerassignment_2ba0a9b4d93e45fb88a407f243b47d08 has version 1.0.2, which satisfies requirement sigprofilerassignment==1.0.2 from https://files.pythonhosted.org/packages/17/00/71d3b5e8d88a5ee86e4e3b350d51dc46343ef44555a03880cd13cfdc3417/sigprofilerassignment-1.0.2.tar.gz 2025-10-29T01:54:22,627 Removed sigprofilerassignment==1.0.2 from https://files.pythonhosted.org/packages/17/00/71d3b5e8d88a5ee86e4e3b350d51dc46343ef44555a03880cd13cfdc3417/sigprofilerassignment-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-wzhbs58a' 2025-10-29T01:54:22,633 Created temporary directory: /tmp/pip-unpack-7ulej0fm 2025-10-29T01:54:22,634 Building wheels for collected packages: sigprofilerassignment 2025-10-29T01:54:22,638 Created temporary directory: /tmp/pip-wheel-h27kzetl 2025-10-29T01:54:22,639 Destination directory: /tmp/pip-wheel-h27kzetl 2025-10-29T01:54:22,641 Building wheel for sigprofilerassignment (pyproject.toml): started 2025-10-29T01:54:22,642 Running command Building wheel for sigprofilerassignment (pyproject.toml) 2025-10-29T01:54:23,241 running bdist_wheel 2025-10-29T01:54:23,275 running build 2025-10-29T01:54:23,276 running build_py 2025-10-29T01:54:23,287 creating build/lib/SigProfilerAssignment 2025-10-29T01:54:23,289 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2025-10-29T01:54:23,291 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2025-10-29T01:54:23,294 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2025-10-29T01:54:23,297 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2025-10-29T01:54:23,300 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2025-10-29T01:54:23,302 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2025-10-29T01:54:23,305 copying SigProfilerAssignment/SigProfilerAssignment_CLI.py -> build/lib/SigProfilerAssignment 2025-10-29T01:54:23,306 running egg_info 2025-10-29T01:54:23,319 writing SigProfilerAssignment.egg-info/PKG-INFO 2025-10-29T01:54:23,323 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2025-10-29T01:54:23,325 writing entry points to SigProfilerAssignment.egg-info/entry_points.txt 2025-10-29T01:54:23,326 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2025-10-29T01:54:23,327 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2025-10-29T01:54:23,338 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2025-10-29T01:54:23,350 reading manifest template 'MANIFEST.in' 2025-10-29T01:54:23,361 adding license file 'LICENSE.txt' 2025-10-29T01:54:23,373 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2025-10-29T01:54:23,377 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.DecompositionPlots' is absent from the `packages` configuration. 2025-10-29T01:54:23,377 !! 2025-10-29T01:54:23,379 ******************************************************************************** 2025-10-29T01:54:23,379 ############################ 2025-10-29T01:54:23,380 # Package would be ignored # 2025-10-29T01:54:23,381 ############################ 2025-10-29T01:54:23,382 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package[^1], 2025-10-29T01:54:23,382 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,383 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,383 package, please make sure that 'SigProfilerAssignment.DecompositionPlots' is explicitly added 2025-10-29T01:54:23,384 to the `packages` configuration field. 2025-10-29T01:54:23,385 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,386 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,387 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,387 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,388 If you don't want 'SigProfilerAssignment.DecompositionPlots' to be distributed and are 2025-10-29T01:54:23,389 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots' via 2025-10-29T01:54:23,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,390 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,390 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,391 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,392 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,394 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,394 even if it does not contain any `.py` files. 2025-10-29T01:54:23,395 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,396 directory, all directories are treated like packages. 2025-10-29T01:54:23,396 ******************************************************************************** 2025-10-29T01:54:23,397 !! 2025-10-29T01:54:23,398 check.warn(importable) 2025-10-29T01:54:23,399 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is absent from the `packages` configuration. 2025-10-29T01:54:23,400 !! 2025-10-29T01:54:23,401 ******************************************************************************** 2025-10-29T01:54:23,401 ############################ 2025-10-29T01:54:23,402 # Package would be ignored # 2025-10-29T01:54:23,402 ############################ 2025-10-29T01:54:23,403 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package[^1], 2025-10-29T01:54:23,404 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,405 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,405 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is explicitly added 2025-10-29T01:54:23,406 to the `packages` configuration field. 2025-10-29T01:54:23,407 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,407 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,408 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,409 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,410 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,412 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' to be distributed and are 2025-10-29T01:54:23,412 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' via 2025-10-29T01:54:23,413 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,414 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,414 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,416 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,417 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,419 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,419 even if it does not contain any `.py` files. 2025-10-29T01:54:23,420 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,420 directory, all directories are treated like packages. 2025-10-29T01:54:23,421 ******************************************************************************** 2025-10-29T01:54:23,422 !! 2025-10-29T01:54:23,422 check.warn(importable) 2025-10-29T01:54:23,423 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is absent from the `packages` configuration. 2025-10-29T01:54:23,423 !! 2025-10-29T01:54:23,424 ******************************************************************************** 2025-10-29T01:54:23,425 ############################ 2025-10-29T01:54:23,426 # Package would be ignored # 2025-10-29T01:54:23,426 ############################ 2025-10-29T01:54:23,427 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package[^1], 2025-10-29T01:54:23,427 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,428 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,429 package, please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is explicitly added 2025-10-29T01:54:23,429 to the `packages` configuration field. 2025-10-29T01:54:23,431 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,431 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,432 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,433 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,434 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,435 If you don't want 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' to be distributed and are 2025-10-29T01:54:23,436 already explicitly excluding 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' via 2025-10-29T01:54:23,436 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,438 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,439 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,440 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,442 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,442 even if it does not contain any `.py` files. 2025-10-29T01:54:23,443 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,445 directory, all directories are treated like packages. 2025-10-29T01:54:23,447 ******************************************************************************** 2025-10-29T01:54:23,448 !! 2025-10-29T01:54:23,448 check.warn(importable) 2025-10-29T01:54:23,448 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.controllers' is absent from the `packages` configuration. 2025-10-29T01:54:23,449 !! 2025-10-29T01:54:23,450 ******************************************************************************** 2025-10-29T01:54:23,450 ############################ 2025-10-29T01:54:23,451 # Package would be ignored # 2025-10-29T01:54:23,451 ############################ 2025-10-29T01:54:23,452 Python recognizes 'SigProfilerAssignment.controllers' as an importable package[^1], 2025-10-29T01:54:23,452 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,453 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,454 package, please make sure that 'SigProfilerAssignment.controllers' is explicitly added 2025-10-29T01:54:23,454 to the `packages` configuration field. 2025-10-29T01:54:23,455 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,456 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,457 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,460 If you don't want 'SigProfilerAssignment.controllers' to be distributed and are 2025-10-29T01:54:23,461 already explicitly excluding 'SigProfilerAssignment.controllers' via 2025-10-29T01:54:23,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,463 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,464 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,467 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,469 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,471 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,472 even if it does not contain any `.py` files. 2025-10-29T01:54:23,472 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,473 directory, all directories are treated like packages. 2025-10-29T01:54:23,473 ******************************************************************************** 2025-10-29T01:54:23,474 !! 2025-10-29T01:54:23,475 check.warn(importable) 2025-10-29T01:54:23,476 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data' is absent from the `packages` configuration. 2025-10-29T01:54:23,476 !! 2025-10-29T01:54:23,477 ******************************************************************************** 2025-10-29T01:54:23,478 ############################ 2025-10-29T01:54:23,478 # Package would be ignored # 2025-10-29T01:54:23,479 ############################ 2025-10-29T01:54:23,479 Python recognizes 'SigProfilerAssignment.data' as an importable package[^1], 2025-10-29T01:54:23,480 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,481 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,481 package, please make sure that 'SigProfilerAssignment.data' is explicitly added 2025-10-29T01:54:23,482 to the `packages` configuration field. 2025-10-29T01:54:23,483 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,483 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,484 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,485 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,486 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,487 If you don't want 'SigProfilerAssignment.data' to be distributed and are 2025-10-29T01:54:23,487 already explicitly excluding 'SigProfilerAssignment.data' via 2025-10-29T01:54:23,488 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,488 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,489 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,490 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,490 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,492 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,493 even if it does not contain any `.py` files. 2025-10-29T01:54:23,493 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,494 directory, all directories are treated like packages. 2025-10-29T01:54:23,494 ******************************************************************************** 2025-10-29T01:54:23,496 !! 2025-10-29T01:54:23,496 check.warn(importable) 2025-10-29T01:54:23,497 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is absent from the `packages` configuration. 2025-10-29T01:54:23,497 !! 2025-10-29T01:54:23,498 ******************************************************************************** 2025-10-29T01:54:23,499 ############################ 2025-10-29T01:54:23,500 # Package would be ignored # 2025-10-29T01:54:23,500 ############################ 2025-10-29T01:54:23,501 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package[^1], 2025-10-29T01:54:23,501 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,503 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,503 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is explicitly added 2025-10-29T01:54:23,504 to the `packages` configuration field. 2025-10-29T01:54:23,505 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,506 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,506 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,507 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,509 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,510 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' to be distributed and are 2025-10-29T01:54:23,510 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' via 2025-10-29T01:54:23,511 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,512 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,513 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,514 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,515 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,516 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,516 even if it does not contain any `.py` files. 2025-10-29T01:54:23,517 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,517 directory, all directories are treated like packages. 2025-10-29T01:54:23,518 ******************************************************************************** 2025-10-29T01:54:23,519 !! 2025-10-29T01:54:23,519 check.warn(importable) 2025-10-29T01:54:23,520 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is absent from the `packages` configuration. 2025-10-29T01:54:23,520 !! 2025-10-29T01:54:23,521 ******************************************************************************** 2025-10-29T01:54:23,522 ############################ 2025-10-29T01:54:23,522 # Package would be ignored # 2025-10-29T01:54:23,523 ############################ 2025-10-29T01:54:23,523 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package[^1], 2025-10-29T01:54:23,524 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,525 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,525 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is explicitly added 2025-10-29T01:54:23,526 to the `packages` configuration field. 2025-10-29T01:54:23,527 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,528 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,528 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,529 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,530 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,532 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' to be distributed and are 2025-10-29T01:54:23,532 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' via 2025-10-29T01:54:23,533 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,533 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,534 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,535 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,536 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,538 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,539 even if it does not contain any `.py` files. 2025-10-29T01:54:23,539 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,540 directory, all directories are treated like packages. 2025-10-29T01:54:23,540 ******************************************************************************** 2025-10-29T01:54:23,541 !! 2025-10-29T01:54:23,542 check.warn(importable) 2025-10-29T01:54:23,543 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm10' is absent from the `packages` configuration. 2025-10-29T01:54:23,543 !! 2025-10-29T01:54:23,544 ******************************************************************************** 2025-10-29T01:54:23,545 ############################ 2025-10-29T01:54:23,545 # Package would be ignored # 2025-10-29T01:54:23,546 ############################ 2025-10-29T01:54:23,546 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package[^1], 2025-10-29T01:54:23,547 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,548 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,548 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is explicitly added 2025-10-29T01:54:23,548 to the `packages` configuration field. 2025-10-29T01:54:23,549 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,550 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,551 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,552 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,554 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm10' to be distributed and are 2025-10-29T01:54:23,554 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm10' via 2025-10-29T01:54:23,555 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,555 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,556 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,557 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,560 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,561 even if it does not contain any `.py` files. 2025-10-29T01:54:23,561 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,562 directory, all directories are treated like packages. 2025-10-29T01:54:23,562 ******************************************************************************** 2025-10-29T01:54:23,563 !! 2025-10-29T01:54:23,564 check.warn(importable) 2025-10-29T01:54:23,564 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.mm9' is absent from the `packages` configuration. 2025-10-29T01:54:23,565 !! 2025-10-29T01:54:23,566 ******************************************************************************** 2025-10-29T01:54:23,567 ############################ 2025-10-29T01:54:23,567 # Package would be ignored # 2025-10-29T01:54:23,568 ############################ 2025-10-29T01:54:23,568 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package[^1], 2025-10-29T01:54:23,569 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,570 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,571 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is explicitly added 2025-10-29T01:54:23,571 to the `packages` configuration field. 2025-10-29T01:54:23,573 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,574 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,575 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,576 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,577 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.mm9' to be distributed and are 2025-10-29T01:54:23,578 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.mm9' via 2025-10-29T01:54:23,579 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,579 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,580 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,581 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,585 even if it does not contain any `.py` files. 2025-10-29T01:54:23,585 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,586 directory, all directories are treated like packages. 2025-10-29T01:54:23,586 ******************************************************************************** 2025-10-29T01:54:23,587 !! 2025-10-29T01:54:23,588 check.warn(importable) 2025-10-29T01:54:23,588 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.Reference_Signatures.rn6' is absent from the `packages` configuration. 2025-10-29T01:54:23,589 !! 2025-10-29T01:54:23,590 ******************************************************************************** 2025-10-29T01:54:23,591 ############################ 2025-10-29T01:54:23,591 # Package would be ignored # 2025-10-29T01:54:23,592 ############################ 2025-10-29T01:54:23,592 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package[^1], 2025-10-29T01:54:23,593 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,595 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,595 package, please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is explicitly added 2025-10-29T01:54:23,596 to the `packages` configuration field. 2025-10-29T01:54:23,597 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,601 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,603 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,604 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,605 If you don't want 'SigProfilerAssignment.data.Reference_Signatures.rn6' to be distributed and are 2025-10-29T01:54:23,606 already explicitly excluding 'SigProfilerAssignment.data.Reference_Signatures.rn6' via 2025-10-29T01:54:23,606 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,607 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,610 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,611 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,612 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,614 even if it does not contain any `.py` files. 2025-10-29T01:54:23,614 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,615 directory, all directories are treated like packages. 2025-10-29T01:54:23,615 ******************************************************************************** 2025-10-29T01:54:23,617 !! 2025-10-29T01:54:23,617 check.warn(importable) 2025-10-29T01:54:23,618 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.tests.cnv_input' is absent from the `packages` configuration. 2025-10-29T01:54:23,619 !! 2025-10-29T01:54:23,620 ******************************************************************************** 2025-10-29T01:54:23,621 ############################ 2025-10-29T01:54:23,621 # Package would be ignored # 2025-10-29T01:54:23,622 ############################ 2025-10-29T01:54:23,622 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package[^1], 2025-10-29T01:54:23,623 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,624 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,625 package, please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is explicitly added 2025-10-29T01:54:23,625 to the `packages` configuration field. 2025-10-29T01:54:23,626 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,627 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,629 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,630 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,631 If you don't want 'SigProfilerAssignment.data.tests.cnv_input' to be distributed and are 2025-10-29T01:54:23,631 already explicitly excluding 'SigProfilerAssignment.data.tests.cnv_input' via 2025-10-29T01:54:23,632 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,632 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,633 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,634 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,637 even if it does not contain any `.py` files. 2025-10-29T01:54:23,638 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,639 directory, all directories are treated like packages. 2025-10-29T01:54:23,639 ******************************************************************************** 2025-10-29T01:54:23,642 !! 2025-10-29T01:54:23,643 check.warn(importable) 2025-10-29T01:54:23,643 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.tests.txt_input' is absent from the `packages` configuration. 2025-10-29T01:54:23,644 !! 2025-10-29T01:54:23,645 ******************************************************************************** 2025-10-29T01:54:23,645 ############################ 2025-10-29T01:54:23,647 # Package would be ignored # 2025-10-29T01:54:23,648 ############################ 2025-10-29T01:54:23,648 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package[^1], 2025-10-29T01:54:23,649 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,650 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,650 package, please make sure that 'SigProfilerAssignment.data.tests.txt_input' is explicitly added 2025-10-29T01:54:23,651 to the `packages` configuration field. 2025-10-29T01:54:23,652 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,652 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,653 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,654 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,655 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,656 If you don't want 'SigProfilerAssignment.data.tests.txt_input' to be distributed and are 2025-10-29T01:54:23,656 already explicitly excluding 'SigProfilerAssignment.data.tests.txt_input' via 2025-10-29T01:54:23,657 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,658 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,658 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,659 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,660 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,661 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,662 even if it does not contain any `.py` files. 2025-10-29T01:54:23,662 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,663 directory, all directories are treated like packages. 2025-10-29T01:54:23,664 ******************************************************************************** 2025-10-29T01:54:23,666 !! 2025-10-29T01:54:23,666 check.warn(importable) 2025-10-29T01:54:23,667 /tmp/pip-build-env-fo8nsd_m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'SigProfilerAssignment.data.tests.vcf_input' is absent from the `packages` configuration. 2025-10-29T01:54:23,668 !! 2025-10-29T01:54:23,669 ******************************************************************************** 2025-10-29T01:54:23,669 ############################ 2025-10-29T01:54:23,670 # Package would be ignored # 2025-10-29T01:54:23,671 ############################ 2025-10-29T01:54:23,672 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package[^1], 2025-10-29T01:54:23,672 but it is absent from setuptools' `packages` configuration. 2025-10-29T01:54:23,673 This leads to an ambiguous overall configuration. If you want to distribute this 2025-10-29T01:54:23,674 package, please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is explicitly added 2025-10-29T01:54:23,674 to the `packages` configuration field. 2025-10-29T01:54:23,675 Alternatively, you can also rely on setuptools' discovery methods 2025-10-29T01:54:23,676 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-10-29T01:54:23,677 instead of `find_packages(...)`/`find:`). 2025-10-29T01:54:23,678 You can read more about "package discovery" on setuptools documentation page: 2025-10-29T01:54:23,679 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-10-29T01:54:23,680 If you don't want 'SigProfilerAssignment.data.tests.vcf_input' to be distributed and are 2025-10-29T01:54:23,680 already explicitly excluding 'SigProfilerAssignment.data.tests.vcf_input' via 2025-10-29T01:54:23,681 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-10-29T01:54:23,681 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-10-29T01:54:23,681 combination with a more fine grained `package-data` configuration. 2025-10-29T01:54:23,682 You can read more about "package data files" on setuptools documentation page: 2025-10-29T01:54:23,683 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-10-29T01:54:23,685 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-10-29T01:54:23,685 even if it does not contain any `.py` files. 2025-10-29T01:54:23,686 On the other hand, currently there is no concept of package data 2025-10-29T01:54:23,686 directory, all directories are treated like packages. 2025-10-29T01:54:23,686 ******************************************************************************** 2025-10-29T01:54:23,688 !! 2025-10-29T01:54:23,689 check.warn(importable) 2025-10-29T01:54:23,689 creating build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,690 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,690 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,691 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,691 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,692 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,693 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,694 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,695 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,695 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:23,696 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2025-10-29T01:54:23,696 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2025-10-29T01:54:23,697 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2025-10-29T01:54:23,697 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2025-10-29T01:54:23,698 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2025-10-29T01:54:23,698 creating build/lib/SigProfilerAssignment/controllers 2025-10-29T01:54:23,699 copying SigProfilerAssignment/controllers/cli_controller.py -> build/lib/SigProfilerAssignment/controllers 2025-10-29T01:54:23,700 creating build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,700 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,701 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,702 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,702 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,702 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,703 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,704 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,704 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,705 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,705 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,706 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2025-10-29T01:54:23,706 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,707 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,708 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,708 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,709 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,709 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,710 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,710 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,711 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,711 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,712 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,712 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,713 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,713 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,714 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,714 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,715 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,716 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,716 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,717 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,717 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,717 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,718 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,719 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,719 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,719 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,720 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,721 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,721 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,722 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,769 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,770 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,770 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:23,771 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,771 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,772 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,773 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,775 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,775 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,776 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,777 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,777 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,778 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,780 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,783 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,788 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,794 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,797 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,800 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,806 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,812 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,816 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,819 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,826 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,832 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,835 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,838 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,841 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,847 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:23,853 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,854 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,858 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,861 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,865 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,869 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,872 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,875 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,881 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,887 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,890 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,893 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,899 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,905 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,908 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,911 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,918 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,924 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,927 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,931 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,938 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,945 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,948 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,951 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,957 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:23,963 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,964 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,968 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,971 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,975 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,979 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,982 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,985 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,993 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:23,999 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,002 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,006 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,012 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,018 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,021 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,024 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,031 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,037 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,040 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,044 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,050 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,056 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,060 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,063 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,068 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,075 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,076 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,081 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,085 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,090 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,094 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,097 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,101 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,108 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,115 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,118 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,122 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,129 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,136 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,140 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,143 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,151 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,158 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,162 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,165 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,176 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,184 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,187 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,190 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,195 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,201 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2025-10-29T01:54:24,202 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2025-10-29T01:54:24,217 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,218 copying SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,221 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,225 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,228 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,231 copying SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,233 copying SigProfilerAssignment/data/tests/txt_input/custom-SBS-list.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,236 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,239 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,241 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,244 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,246 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,249 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,250 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,253 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,260 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,264 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,271 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,294 installing to build/bdist.linux-armv7l/wheel 2025-10-29T01:54:24,295 running install 2025-10-29T01:54:24,319 running install_lib 2025-10-29T01:54:24,328 creating build/bdist.linux-armv7l/wheel 2025-10-29T01:54:24,331 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2025-10-29T01:54:24,332 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2025-10-29T01:54:24,335 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2025-10-29T01:54:24,337 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,347 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,352 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,354 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,356 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,359 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2025-10-29T01:54:24,361 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,363 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,372 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,378 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,384 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,397 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,400 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,406 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,409 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,412 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,415 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,419 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,426 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,429 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,435 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,438 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,441 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,445 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,448 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,451 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,454 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,456 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,463 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,468 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,471 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm9 2025-10-29T01:54:24,479 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,481 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,484 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,488 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,492 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,496 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,499 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,502 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,508 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,512 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,515 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,519 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,525 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,531 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,535 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,539 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,546 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,549 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,553 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,556 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,562 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,566 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,570 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,573 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,579 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,581 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,584 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,587 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,592 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,597 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,600 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,603 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,608 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh37 2025-10-29T01:54:24,614 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,615 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,618 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,624 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,630 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,633 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,639 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,645 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,650 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,656 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,659 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,663 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,666 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,669 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,673 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,675 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,680 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,683 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,686 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,689 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,692 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,694 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,699 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,703 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,706 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/mm10 2025-10-29T01:54:24,711 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,712 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,718 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,723 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,726 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,729 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,732 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,735 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,738 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,740 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,744 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,750 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,752 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,755 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,760 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,767 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,769 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,772 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,775 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,779 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,783 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,787 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,792 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,797 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,802 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/rn6 2025-10-29T01:54:24,805 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,806 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,811 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,814 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,818 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,821 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,824 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,829 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,832 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,835 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,837 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,840 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,845 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,848 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,853 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,856 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,859 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,865 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,868 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,871 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,874 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,878 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,882 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,888 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,892 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,896 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/Reference_Signatures/GRCh38 2025-10-29T01:54:24,901 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,904 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2025-10-29T01:54:24,905 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,907 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,909 copying build/lib/SigProfilerAssignment/data/tests/txt_input/custom-SBS-list.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,911 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,914 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,916 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,918 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,920 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,922 copying build/lib/SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,924 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,926 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,928 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/txt_input 2025-10-29T01:54:24,931 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,932 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,937 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,942 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,950 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,954 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/vcf_input 2025-10-29T01:54:24,958 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2025-10-29T01:54:24,959 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data/tests/cnv_input 2025-10-29T01:54:24,968 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,972 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,975 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,977 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,980 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/data 2025-10-29T01:54:24,982 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2025-10-29T01:54:24,985 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/controllers 2025-10-29T01:54:24,986 copying build/lib/SigProfilerAssignment/controllers/cli_controller.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/controllers 2025-10-29T01:54:24,989 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2025-10-29T01:54:24,992 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2025-10-29T01:54:24,995 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2025-10-29T01:54:24,997 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2025-10-29T01:54:25,000 copying build/lib/SigProfilerAssignment/SigProfilerAssignment_CLI.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment 2025-10-29T01:54:25,002 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,004 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,006 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,009 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,012 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,021 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,024 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,027 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,030 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,033 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots 2025-10-29T01:54:25,036 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2025-10-29T01:54:25,039 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2025-10-29T01:54:25,040 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2025-10-29T01:54:25,075 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2025-10-29T01:54:25,078 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/./SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2025-10-29T01:54:25,079 running install_egg_info 2025-10-29T01:54:25,094 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/./SigProfilerAssignment-1.0.2-py3.11.egg-info 2025-10-29T01:54:25,109 running install_scripts 2025-10-29T01:54:25,121 creating build/bdist.linux-armv7l/wheel/sigprofilerassignment-1.0.2.dist-info/WHEEL 2025-10-29T01:54:25,124 creating '/tmp/pip-wheel-h27kzetl/.tmp-l4ajnrzc/sigprofilerassignment-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-29T01:54:25,126 adding 'SigProfilerAssignment/Analyzer.py' 2025-10-29T01:54:25,128 adding 'SigProfilerAssignment/SigProfilerAssignment_CLI.py' 2025-10-29T01:54:25,129 adding 'SigProfilerAssignment/__init__.py' 2025-10-29T01:54:25,135 adding 'SigProfilerAssignment/decompose_subroutines.py' 2025-10-29T01:54:25,140 adding 'SigProfilerAssignment/decomposition.py' 2025-10-29T01:54:25,144 adding 'SigProfilerAssignment/single_sample.py' 2025-10-29T01:54:25,146 adding 'SigProfilerAssignment/version.py' 2025-10-29T01:54:25,150 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2025-10-29T01:54:25,152 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2025-10-29T01:54:25,154 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2025-10-29T01:54:25,157 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2025-10-29T01:54:25,159 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2025-10-29T01:54:25,161 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2025-10-29T01:54:25,163 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2025-10-29T01:54:25,166 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SV32.py' 2025-10-29T01:54:25,181 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2025-10-29T01:54:25,185 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2025-10-29T01:54:25,187 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2025-10-29T01:54:25,314 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2025-10-29T01:54:25,324 adding 'SigProfilerAssignment/controllers/cli_controller.py' 2025-10-29T01:54:25,327 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2025-10-29T01:54:25,329 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2025-10-29T01:54:25,334 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2025-10-29T01:54:25,336 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2025-10-29T01:54:25,359 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2025-10-29T01:54:25,410 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2025-10-29T01:54:25,414 adding 'SigProfilerAssignment/data/Samples.txt' 2025-10-29T01:54:25,416 adding 'SigProfilerAssignment/data/csvexample.csv' 2025-10-29T01:54:25,418 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2025-10-29T01:54:25,421 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2025-10-29T01:54:25,435 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2025-10-29T01:54:25,440 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2025-10-29T01:54:25,449 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2025-10-29T01:54:25,457 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2025-10-29T01:54:25,469 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2025-10-29T01:54:25,472 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2025-10-29T01:54:25,476 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2025-10-29T01:54:25,481 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2025-10-29T01:54:25,514 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2025-10-29T01:54:25,549 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2025-10-29T01:54:25,553 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2025-10-29T01:54:25,556 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2025-10-29T01:54:25,562 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2025-10-29T01:54:25,583 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2025-10-29T01:54:25,620 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2025-10-29T01:54:25,658 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2025-10-29T01:54:25,662 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2025-10-29T01:54:25,665 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2025-10-29T01:54:25,669 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2025-10-29T01:54:25,674 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2025-10-29T01:54:25,711 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2025-10-29T01:54:25,749 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2025-10-29T01:54:25,753 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_CN_GRCh37.txt' 2025-10-29T01:54:25,756 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37.txt' 2025-10-29T01:54:25,762 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_DBS_GRCh37_exome.txt' 2025-10-29T01:54:25,767 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_ID_GRCh37.txt' 2025-10-29T01:54:25,789 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37.txt' 2025-10-29T01:54:25,831 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.4_SBS_GRCh37_exome.txt' 2025-10-29T01:54:25,835 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2025-10-29T01:54:25,839 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2025-10-29T01:54:25,845 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2025-10-29T01:54:25,877 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2025-10-29T01:54:25,909 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2025-10-29T01:54:25,919 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2025-10-29T01:54:25,927 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2025-10-29T01:54:25,940 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2025-10-29T01:54:25,952 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2025-10-29T01:54:25,956 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2025-10-29T01:54:25,959 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2025-10-29T01:54:25,992 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2025-10-29T01:54:26,027 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2025-10-29T01:54:26,031 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2025-10-29T01:54:26,034 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2025-10-29T01:54:26,070 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2025-10-29T01:54:26,108 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2025-10-29T01:54:26,112 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2025-10-29T01:54:26,115 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2025-10-29T01:54:26,152 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2025-10-29T01:54:26,190 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2025-10-29T01:54:26,198 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38.txt' 2025-10-29T01:54:26,204 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_DBS_GRCh38_exome.txt' 2025-10-29T01:54:26,248 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38.txt' 2025-10-29T01:54:26,290 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SBS_GRCh38_exome.txt' 2025-10-29T01:54:26,293 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.4_SV_GRCh38.txt' 2025-10-29T01:54:26,296 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2025-10-29T01:54:26,299 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2025-10-29T01:54:26,330 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2025-10-29T01:54:26,362 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2025-10-29T01:54:26,372 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2025-10-29T01:54:26,380 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2025-10-29T01:54:26,393 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2025-10-29T01:54:26,405 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2025-10-29T01:54:26,409 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2025-10-29T01:54:26,412 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2025-10-29T01:54:26,445 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2025-10-29T01:54:26,480 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2025-10-29T01:54:26,484 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2025-10-29T01:54:26,487 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2025-10-29T01:54:26,523 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2025-10-29T01:54:26,561 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2025-10-29T01:54:26,565 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2025-10-29T01:54:26,568 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2025-10-29T01:54:26,605 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2025-10-29T01:54:26,643 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2025-10-29T01:54:26,651 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10.txt' 2025-10-29T01:54:26,657 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_DBS_mm10_exome.txt' 2025-10-29T01:54:26,701 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10.txt' 2025-10-29T01:54:26,743 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.4_SBS_mm10_exome.txt' 2025-10-29T01:54:26,747 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2025-10-29T01:54:26,751 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2025-10-29T01:54:26,782 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2025-10-29T01:54:26,813 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2025-10-29T01:54:26,824 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2025-10-29T01:54:26,832 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2025-10-29T01:54:26,844 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2025-10-29T01:54:26,857 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2025-10-29T01:54:26,860 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2025-10-29T01:54:26,864 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2025-10-29T01:54:26,897 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2025-10-29T01:54:26,931 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2025-10-29T01:54:26,935 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2025-10-29T01:54:26,939 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2025-10-29T01:54:26,976 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2025-10-29T01:54:27,014 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2025-10-29T01:54:27,019 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2025-10-29T01:54:27,023 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2025-10-29T01:54:27,061 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2025-10-29T01:54:27,099 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2025-10-29T01:54:27,107 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9.txt' 2025-10-29T01:54:27,114 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_DBS_mm9_exome.txt' 2025-10-29T01:54:27,158 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9.txt' 2025-10-29T01:54:27,200 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.4_SBS_mm9_exome.txt' 2025-10-29T01:54:27,205 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2025-10-29T01:54:27,208 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2025-10-29T01:54:27,239 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2025-10-29T01:54:27,271 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2025-10-29T01:54:27,281 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2025-10-29T01:54:27,290 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2025-10-29T01:54:27,302 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2025-10-29T01:54:27,314 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2025-10-29T01:54:27,318 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2025-10-29T01:54:27,321 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2025-10-29T01:54:27,355 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2025-10-29T01:54:27,389 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2025-10-29T01:54:27,393 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2025-10-29T01:54:27,396 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2025-10-29T01:54:27,432 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2025-10-29T01:54:27,469 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2025-10-29T01:54:27,473 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2025-10-29T01:54:27,477 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2025-10-29T01:54:27,513 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2025-10-29T01:54:27,551 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2025-10-29T01:54:27,559 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6.txt' 2025-10-29T01:54:27,565 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_DBS_rn6_exome.txt' 2025-10-29T01:54:27,609 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6.txt' 2025-10-29T01:54:27,651 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.4_SBS_rn6_exome.txt' 2025-10-29T01:54:27,655 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2025-10-29T01:54:27,659 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2025-10-29T01:54:27,690 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2025-10-29T01:54:27,721 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2025-10-29T01:54:27,787 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2025-10-29T01:54:27,792 adding 'SigProfilerAssignment/data/tests/txt_input/CNV48_S3_Signatures.txt' 2025-10-29T01:54:27,794 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2025-10-29T01:54:27,795 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2025-10-29T01:54:27,797 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2025-10-29T01:54:27,799 adding 'SigProfilerAssignment/data/tests/txt_input/SV32_S3_Signatures.txt' 2025-10-29T01:54:27,801 adding 'SigProfilerAssignment/data/tests/txt_input/custom-SBS-list.txt' 2025-10-29T01:54:27,804 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_CNV48.txt' 2025-10-29T01:54:27,805 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2025-10-29T01:54:27,807 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2025-10-29T01:54:27,808 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2025-10-29T01:54:27,810 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SV32.txt' 2025-10-29T01:54:27,816 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2025-10-29T01:54:27,836 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2025-10-29T01:54:27,855 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2025-10-29T01:54:27,889 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2025-10-29T01:54:27,909 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2025-10-29T01:54:27,913 adding 'sigprofilerassignment-1.0.2.dist-info/licenses/LICENSE.txt' 2025-10-29T01:54:27,915 adding 'sigprofilerassignment-1.0.2.dist-info/METADATA' 2025-10-29T01:54:27,916 adding 'sigprofilerassignment-1.0.2.dist-info/WHEEL' 2025-10-29T01:54:27,917 adding 'sigprofilerassignment-1.0.2.dist-info/entry_points.txt' 2025-10-29T01:54:27,917 adding 'sigprofilerassignment-1.0.2.dist-info/top_level.txt' 2025-10-29T01:54:27,921 adding 'sigprofilerassignment-1.0.2.dist-info/RECORD' 2025-10-29T01:54:27,988 removing build/bdist.linux-armv7l/wheel 2025-10-29T01:54:28,142 Building wheel for sigprofilerassignment (pyproject.toml): finished with status 'done' 2025-10-29T01:54:28,250 Created wheel for sigprofilerassignment: filename=sigprofilerassignment-1.0.2-py3-none-any.whl size=5585519 sha256=467d8dfa43ea5de59279be93e9853641cd66061d6c9ab51e8cceac1df9f518dc 2025-10-29T01:54:28,251 Stored in directory: /tmp/pip-ephem-wheel-cache-8vg_jhw1/wheels/e6/f1/2d/6af4babe6c086cae10e24270f9565c04f51970067c06cd8687 2025-10-29T01:54:28,271 Successfully built sigprofilerassignment 2025-10-29T01:54:28,409 Removed build tracker: '/tmp/pip-build-tracker-wzhbs58a'