2025-10-29T19:45:27,805 Created temporary directory: /tmp/pip-ephem-wheel-cache-c7yhdqut 2025-10-29T19:45:27,807 Created temporary directory: /tmp/pip-build-tracker-90hwfpzt 2025-10-29T19:45:27,807 Initialized build tracking at /tmp/pip-build-tracker-90hwfpzt 2025-10-29T19:45:27,808 Created build tracker: /tmp/pip-build-tracker-90hwfpzt 2025-10-29T19:45:27,808 Entered build tracker: /tmp/pip-build-tracker-90hwfpzt 2025-10-29T19:45:27,809 Created temporary directory: /tmp/pip-wheel-itcrzf26 2025-10-29T19:45:27,812 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-29T19:45:27,814 Created temporary directory: /tmp/pip-ephem-wheel-cache-j3p8wgdh 2025-10-29T19:45:27,836 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-29T19:45:27,840 2 location(s) to search for versions of cool-seq-tool: 2025-10-29T19:45:27,840 * https://pypi.org/simple/cool-seq-tool/ 2025-10-29T19:45:27,840 * https://www.piwheels.org/simple/cool-seq-tool/ 2025-10-29T19:45:27,840 Fetching project page and analyzing links: https://pypi.org/simple/cool-seq-tool/ 2025-10-29T19:45:27,841 Getting page https://pypi.org/simple/cool-seq-tool/ 2025-10-29T19:45:27,843 Found index url https://pypi.org/simple 2025-10-29T19:45:28,058 Fetched page https://pypi.org/simple/cool-seq-tool/ as application/vnd.pypi.simple.v1+json 2025-10-29T19:45:28,075 Skipping link: No binaries permitted for cool-seq-tool: 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https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.3.0.dev1-py3-none-any.whl#sha256=87858e36a415be384a2421b35109fd5f7ea3becbe489d2915e8fa5e794e769f0 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,375 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.3.0.dev0-py3-none-any.whl#sha256=8fb97744e229f6260075a30a3dda89f7768858beae002f54da2fbb6e8664780b (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,376 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.2.0.dev0-py3-none-any.whl#sha256=9b4dc7d79d81003c970a0ce3d87f82aa8309c499b30896af8fc1fd130c5e36e5 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,376 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.14.dev3-py3-none-any.whl#sha256=a08d0d9538306cc805eb13916a6dcc68281896c318ed6f77eb1505c239c933c2 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,377 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.14.dev2-py3-none-any.whl#sha256=fffc5301fc38f82f5ce654b893b76378662686b1b1d4f165512e09b7e488f83b (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,377 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.14.dev1-py3-none-any.whl#sha256=579f19ac1f46b21702b7797c45e7480324f4e49326a243555892ff45e9f2e586 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,378 Skipping link: No binaries permitted for cool-seq-tool: 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https://www.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.11-py3-none-any.whl#sha256=10611238536f602c39d43cfb283961abbc1e635825d65aad7e500c37ce775f63 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,380 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.10-py3-none-any.whl#sha256=db6100933d75c339a8bda33621aba7b4c11660d04ca9b010bbcfe68621ebe463 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,380 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.9-py3-none-any.whl#sha256=42aacf3300fa07b881fec41ebef33650e7cf3bdca5396d0d6d31cfd72761cea0 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,381 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.8-py3-none-any.whl#sha256=c66fe62bd5111225990d60122c58c9a4668fb9dd15725a8974e4562715424ad7 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,381 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.7-py3-none-any.whl#sha256=6ebd28a20e3317ada82c3fc3d97c1d24a48fc0ef80fcb469cd23d49692da5d66 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,382 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.6-py3-none-any.whl#sha256=e6c7710a805b4fbe77f84fa23d8c451e374bef97e036352d2391888c3e6e22d6 (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,382 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.5-py3-none-any.whl#sha256=8c06d9425c581bc6b94bea9cf23a9ba058c0fa5d1999971d6c6b29797366163e (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,383 Skipping link: No binaries permitted for cool-seq-tool: https://archive1.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.4-py3-none-any.whl#sha256=99837ef6073c54c2795f87af602a31fb916f37a7c1b365962a9e13f9049b0c3d (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2025-10-29T19:45:28,384 Skipping link: not a file: https://www.piwheels.org/simple/cool-seq-tool/ 2025-10-29T19:45:28,384 Skipping link: not a file: https://pypi.org/simple/cool-seq-tool/ 2025-10-29T19:45:28,409 Given no hashes to check 1 links for project 'cool-seq-tool': discarding no candidates 2025-10-29T19:45:28,428 Collecting cool-seq-tool==0.15.1 2025-10-29T19:45:28,431 Created temporary directory: /tmp/pip-unpack-088_ekku 2025-10-29T19:45:28,643 Downloading cool_seq_tool-0.15.1.tar.gz (4.4 MB) 2025-10-29T19:45:30,486 Added cool-seq-tool==0.15.1 from https://files.pythonhosted.org/packages/1b/b7/6c97769023e049e9620644ea3019a390f401d2fd951a6d69c0c2cbf909d0/cool_seq_tool-0.15.1.tar.gz to build tracker '/tmp/pip-build-tracker-90hwfpzt' 2025-10-29T19:45:30,494 Created temporary directory: /tmp/pip-build-env-0q2xyj41 2025-10-29T19:45:30,499 Installing build dependencies: started 2025-10-29T19:45:30,500 Running command pip subprocess to install build dependencies 2025-10-29T19:45:31,647 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-29T19:45:32,262 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-29T19:45:32,286 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-29T19:45:34,017 Collecting setuptools>=64 2025-10-29T19:45:34,115 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-29T19:45:34,493 Collecting setuptools_scm>=8 2025-10-29T19:45:34,510 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-10-29T19:45:34,696 Collecting packaging>=20 2025-10-29T19:45:34,711 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-10-29T19:45:37,604 Installing collected packages: setuptools, packaging, setuptools_scm 2025-10-29T19:45:41,640 Creating /tmp/pip-build-env-0q2xyj41/overlay/local/bin 2025-10-29T19:45:41,642 changing mode of /tmp/pip-build-env-0q2xyj41/overlay/local/bin/setuptools-scm to 755 2025-10-29T19:45:41,666 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 2025-10-29T19:45:41,946 Installing build dependencies: finished with status 'done' 2025-10-29T19:45:41,953 Getting requirements to build wheel: started 2025-10-29T19:45:41,954 Running command Getting requirements to build wheel 2025-10-29T19:45:42,662 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-29T19:45:42,663 !! 2025-10-29T19:45:42,664 ******************************************************************************** 2025-10-29T19:45:42,664 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-29T19:45:42,666 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-29T19:45:42,666 or your builds will no longer be supported. 2025-10-29T19:45:42,668 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:42,668 ******************************************************************************** 2025-10-29T19:45:42,670 !! 2025-10-29T19:45:42,670 corresp(dist, value, root_dir) 2025-10-29T19:45:42,761 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T19:45:42,762 !! 2025-10-29T19:45:42,763 ******************************************************************************** 2025-10-29T19:45:42,764 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T19:45:42,765 License :: OSI Approved :: MIT License 2025-10-29T19:45:42,766 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:42,767 ******************************************************************************** 2025-10-29T19:45:42,768 !! 2025-10-29T19:45:42,768 dist._finalize_license_expression() 2025-10-29T19:45:42,769 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T19:45:42,769 !! 2025-10-29T19:45:42,770 ******************************************************************************** 2025-10-29T19:45:42,770 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T19:45:42,771 License :: OSI Approved :: MIT License 2025-10-29T19:45:42,772 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:42,772 ******************************************************************************** 2025-10-29T19:45:42,773 !! 2025-10-29T19:45:42,774 self._finalize_license_expression() 2025-10-29T19:45:42,781 running egg_info 2025-10-29T19:45:42,789 writing src/cool_seq_tool.egg-info/PKG-INFO 2025-10-29T19:45:42,799 writing dependency_links to src/cool_seq_tool.egg-info/dependency_links.txt 2025-10-29T19:45:42,805 writing requirements to src/cool_seq_tool.egg-info/requires.txt 2025-10-29T19:45:42,806 writing top-level names to src/cool_seq_tool.egg-info/top_level.txt 2025-10-29T19:45:42,911 listing git files failed - pretending there aren't any 2025-10-29T19:45:42,916 reading manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-10-29T19:45:42,925 adding license file 'LICENSE' 2025-10-29T19:45:42,929 writing manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-10-29T19:45:43,032 Getting requirements to build wheel: finished with status 'done' 2025-10-29T19:45:43,036 Created temporary directory: /tmp/pip-modern-metadata-0_skcqox 2025-10-29T19:45:43,038 Preparing metadata (pyproject.toml): started 2025-10-29T19:45:43,039 Running command Preparing metadata (pyproject.toml) 2025-10-29T19:45:43,667 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-29T19:45:43,667 !! 2025-10-29T19:45:43,668 ******************************************************************************** 2025-10-29T19:45:43,668 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-29T19:45:43,670 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-29T19:45:43,670 or your builds will no longer be supported. 2025-10-29T19:45:43,671 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:43,672 ******************************************************************************** 2025-10-29T19:45:43,673 !! 2025-10-29T19:45:43,673 corresp(dist, value, root_dir) 2025-10-29T19:45:43,753 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T19:45:43,754 !! 2025-10-29T19:45:43,755 ******************************************************************************** 2025-10-29T19:45:43,755 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T19:45:43,757 License :: OSI Approved :: MIT License 2025-10-29T19:45:43,758 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:43,758 ******************************************************************************** 2025-10-29T19:45:43,760 !! 2025-10-29T19:45:43,760 dist._finalize_license_expression() 2025-10-29T19:45:43,762 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T19:45:43,762 !! 2025-10-29T19:45:43,763 ******************************************************************************** 2025-10-29T19:45:43,764 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T19:45:43,765 License :: OSI Approved :: MIT License 2025-10-29T19:45:43,766 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:43,766 ******************************************************************************** 2025-10-29T19:45:43,767 !! 2025-10-29T19:45:43,767 self._finalize_license_expression() 2025-10-29T19:45:43,774 running dist_info 2025-10-29T19:45:43,788 creating /tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info 2025-10-29T19:45:43,789 writing /tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info/PKG-INFO 2025-10-29T19:45:43,799 writing dependency_links to /tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info/dependency_links.txt 2025-10-29T19:45:43,805 writing requirements to /tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info/requires.txt 2025-10-29T19:45:43,806 writing top-level names to /tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info/top_level.txt 2025-10-29T19:45:43,807 writing manifest file '/tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info/SOURCES.txt' 2025-10-29T19:45:43,855 listing git files failed - pretending there aren't any 2025-10-29T19:45:43,859 reading manifest file '/tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info/SOURCES.txt' 2025-10-29T19:45:43,861 adding license file 'LICENSE' 2025-10-29T19:45:43,864 writing manifest file '/tmp/pip-modern-metadata-0_skcqox/cool_seq_tool.egg-info/SOURCES.txt' 2025-10-29T19:45:43,865 creating '/tmp/pip-modern-metadata-0_skcqox/cool_seq_tool-0.15.1.dist-info' 2025-10-29T19:45:43,991 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-29T19:45:43,996 Source in /tmp/pip-wheel-itcrzf26/cool-seq-tool_b3bfa8c17b6c43cb8ff4d28b4993bbde has version 0.15.1, which satisfies requirement cool-seq-tool==0.15.1 from https://files.pythonhosted.org/packages/1b/b7/6c97769023e049e9620644ea3019a390f401d2fd951a6d69c0c2cbf909d0/cool_seq_tool-0.15.1.tar.gz 2025-10-29T19:45:43,997 Removed cool-seq-tool==0.15.1 from https://files.pythonhosted.org/packages/1b/b7/6c97769023e049e9620644ea3019a390f401d2fd951a6d69c0c2cbf909d0/cool_seq_tool-0.15.1.tar.gz from build tracker '/tmp/pip-build-tracker-90hwfpzt' 2025-10-29T19:45:44,004 Created temporary directory: /tmp/pip-unpack-raubh98e 2025-10-29T19:45:44,005 Building wheels for collected packages: cool-seq-tool 2025-10-29T19:45:44,009 Created temporary directory: /tmp/pip-wheel-rv3_7ud6 2025-10-29T19:45:44,010 Destination directory: /tmp/pip-wheel-rv3_7ud6 2025-10-29T19:45:44,012 Building wheel for cool-seq-tool (pyproject.toml): started 2025-10-29T19:45:44,013 Running command Building wheel for cool-seq-tool (pyproject.toml) 2025-10-29T19:45:44,632 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-29T19:45:44,632 !! 2025-10-29T19:45:44,633 ******************************************************************************** 2025-10-29T19:45:44,634 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-29T19:45:44,635 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-29T19:45:44,636 or your builds will no longer be supported. 2025-10-29T19:45:44,637 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:44,638 ******************************************************************************** 2025-10-29T19:45:44,639 !! 2025-10-29T19:45:44,639 corresp(dist, value, root_dir) 2025-10-29T19:45:44,715 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T19:45:44,716 !! 2025-10-29T19:45:44,716 ******************************************************************************** 2025-10-29T19:45:44,717 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T19:45:44,718 License :: OSI Approved :: MIT License 2025-10-29T19:45:44,719 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:44,719 ******************************************************************************** 2025-10-29T19:45:44,720 !! 2025-10-29T19:45:44,721 dist._finalize_license_expression() 2025-10-29T19:45:44,723 /tmp/pip-build-env-0q2xyj41/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T19:45:44,723 !! 2025-10-29T19:45:44,724 ******************************************************************************** 2025-10-29T19:45:44,725 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T19:45:44,726 License :: OSI Approved :: MIT License 2025-10-29T19:45:44,727 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T19:45:44,727 ******************************************************************************** 2025-10-29T19:45:44,728 !! 2025-10-29T19:45:44,729 self._finalize_license_expression() 2025-10-29T19:45:44,729 running bdist_wheel 2025-10-29T19:45:44,755 running build 2025-10-29T19:45:44,755 running build_py 2025-10-29T19:45:44,763 creating build/lib/cool_seq_tool 2025-10-29T19:45:44,765 copying src/cool_seq_tool/app.py -> build/lib/cool_seq_tool 2025-10-29T19:45:44,768 copying src/cool_seq_tool/__init__.py -> build/lib/cool_seq_tool 2025-10-29T19:45:44,770 copying src/cool_seq_tool/utils.py -> build/lib/cool_seq_tool 2025-10-29T19:45:44,772 copying src/cool_seq_tool/schemas.py -> build/lib/cool_seq_tool 2025-10-29T19:45:44,775 creating build/lib/cool_seq_tool/mappers 2025-10-29T19:45:44,776 copying src/cool_seq_tool/mappers/mane_transcript.py -> build/lib/cool_seq_tool/mappers 2025-10-29T19:45:44,780 copying src/cool_seq_tool/mappers/liftover.py -> build/lib/cool_seq_tool/mappers 2025-10-29T19:45:44,782 copying src/cool_seq_tool/mappers/exon_genomic_coords.py -> build/lib/cool_seq_tool/mappers 2025-10-29T19:45:44,785 copying src/cool_seq_tool/mappers/feature_overlap.py -> build/lib/cool_seq_tool/mappers 2025-10-29T19:45:44,787 copying src/cool_seq_tool/mappers/__init__.py -> build/lib/cool_seq_tool/mappers 2025-10-29T19:45:44,789 copying src/cool_seq_tool/mappers/alignment.py -> build/lib/cool_seq_tool/mappers 2025-10-29T19:45:44,792 creating build/lib/cool_seq_tool/sources 2025-10-29T19:45:44,793 copying src/cool_seq_tool/sources/__init__.py -> build/lib/cool_seq_tool/sources 2025-10-29T19:45:44,795 copying src/cool_seq_tool/sources/transcript_mappings.py -> build/lib/cool_seq_tool/sources 2025-10-29T19:45:44,798 copying src/cool_seq_tool/sources/uta_database.py -> build/lib/cool_seq_tool/sources 2025-10-29T19:45:44,801 copying src/cool_seq_tool/sources/mane_transcript_mappings.py -> build/lib/cool_seq_tool/sources 2025-10-29T19:45:44,803 creating build/lib/cool_seq_tool/handlers 2025-10-29T19:45:44,804 copying src/cool_seq_tool/handlers/seqrepo_access.py -> build/lib/cool_seq_tool/handlers 2025-10-29T19:45:44,807 copying src/cool_seq_tool/handlers/__init__.py -> build/lib/cool_seq_tool/handlers 2025-10-29T19:45:44,809 creating build/lib/cool_seq_tool/resources 2025-10-29T19:45:44,810 copying src/cool_seq_tool/resources/status.py -> build/lib/cool_seq_tool/resources 2025-10-29T19:45:44,813 copying src/cool_seq_tool/resources/data_files.py -> build/lib/cool_seq_tool/resources 2025-10-29T19:45:44,815 copying src/cool_seq_tool/resources/__init__.py -> build/lib/cool_seq_tool/resources 2025-10-29T19:45:44,816 running egg_info 2025-10-29T19:45:44,830 writing src/cool_seq_tool.egg-info/PKG-INFO 2025-10-29T19:45:44,839 writing dependency_links to src/cool_seq_tool.egg-info/dependency_links.txt 2025-10-29T19:45:44,845 writing requirements to src/cool_seq_tool.egg-info/requires.txt 2025-10-29T19:45:44,846 writing top-level names to src/cool_seq_tool.egg-info/top_level.txt 2025-10-29T19:45:44,881 listing git files failed - pretending there aren't any 2025-10-29T19:45:44,885 reading manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-10-29T19:45:44,890 adding license file 'LICENSE' 2025-10-29T19:45:44,895 writing manifest file 'src/cool_seq_tool.egg-info/SOURCES.txt' 2025-10-29T19:45:44,900 copying src/cool_seq_tool/resources/transcript_mapping.tsv -> build/lib/cool_seq_tool/resources 2025-10-29T19:45:45,272 installing to build/bdist.linux-armv7l/wheel 2025-10-29T19:45:45,273 running install 2025-10-29T19:45:45,298 running install_lib 2025-10-29T19:45:45,305 creating build/bdist.linux-armv7l/wheel 2025-10-29T19:45:45,308 creating build/bdist.linux-armv7l/wheel/cool_seq_tool 2025-10-29T19:45:45,310 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/mappers 2025-10-29T19:45:45,312 copying build/lib/cool_seq_tool/mappers/mane_transcript.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-10-29T19:45:45,315 copying build/lib/cool_seq_tool/mappers/liftover.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-10-29T19:45:45,317 copying build/lib/cool_seq_tool/mappers/exon_genomic_coords.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-10-29T19:45:45,320 copying build/lib/cool_seq_tool/mappers/feature_overlap.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-10-29T19:45:45,323 copying build/lib/cool_seq_tool/mappers/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-10-29T19:45:45,325 copying build/lib/cool_seq_tool/mappers/alignment.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/mappers 2025-10-29T19:45:45,327 copying build/lib/cool_seq_tool/app.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-10-29T19:45:45,329 copying build/lib/cool_seq_tool/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-10-29T19:45:45,331 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/sources 2025-10-29T19:45:45,333 copying build/lib/cool_seq_tool/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-10-29T19:45:45,334 copying build/lib/cool_seq_tool/sources/transcript_mappings.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-10-29T19:45:45,337 copying build/lib/cool_seq_tool/sources/uta_database.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-10-29T19:45:45,340 copying build/lib/cool_seq_tool/sources/mane_transcript_mappings.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/sources 2025-10-29T19:45:45,342 copying build/lib/cool_seq_tool/utils.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-10-29T19:45:45,344 copying build/lib/cool_seq_tool/schemas.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool 2025-10-29T19:45:45,347 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/handlers 2025-10-29T19:45:45,348 copying build/lib/cool_seq_tool/handlers/seqrepo_access.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/handlers 2025-10-29T19:45:45,350 copying build/lib/cool_seq_tool/handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/handlers 2025-10-29T19:45:45,352 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/resources 2025-10-29T19:45:45,353 copying build/lib/cool_seq_tool/resources/status.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-10-29T19:45:45,356 copying build/lib/cool_seq_tool/resources/data_files.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-10-29T19:45:45,359 copying build/lib/cool_seq_tool/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-10-29T19:45:45,360 copying build/lib/cool_seq_tool/resources/transcript_mapping.tsv -> build/bdist.linux-armv7l/wheel/./cool_seq_tool/resources 2025-10-29T19:45:45,707 running install_egg_info 2025-10-29T19:45:45,714 Copying src/cool_seq_tool.egg-info to build/bdist.linux-armv7l/wheel/./cool_seq_tool-0.15.1-py3.11.egg-info 2025-10-29T19:45:45,724 running install_scripts 2025-10-29T19:45:45,736 creating build/bdist.linux-armv7l/wheel/cool_seq_tool-0.15.1.dist-info/WHEEL 2025-10-29T19:45:45,738 creating '/tmp/pip-wheel-rv3_7ud6/.tmp-svphe0d2/cool_seq_tool-0.15.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-29T19:45:45,740 adding 'cool_seq_tool/__init__.py' 2025-10-29T19:45:45,742 adding 'cool_seq_tool/app.py' 2025-10-29T19:45:45,744 adding 'cool_seq_tool/schemas.py' 2025-10-29T19:45:45,745 adding 'cool_seq_tool/utils.py' 2025-10-29T19:45:45,747 adding 'cool_seq_tool/handlers/__init__.py' 2025-10-29T19:45:45,749 adding 'cool_seq_tool/handlers/seqrepo_access.py' 2025-10-29T19:45:45,751 adding 'cool_seq_tool/mappers/__init__.py' 2025-10-29T19:45:45,752 adding 'cool_seq_tool/mappers/alignment.py' 2025-10-29T19:45:45,758 adding 'cool_seq_tool/mappers/exon_genomic_coords.py' 2025-10-29T19:45:45,760 adding 'cool_seq_tool/mappers/feature_overlap.py' 2025-10-29T19:45:45,762 adding 'cool_seq_tool/mappers/liftover.py' 2025-10-29T19:45:45,767 adding 'cool_seq_tool/mappers/mane_transcript.py' 2025-10-29T19:45:45,769 adding 'cool_seq_tool/resources/__init__.py' 2025-10-29T19:45:45,770 adding 'cool_seq_tool/resources/data_files.py' 2025-10-29T19:45:45,772 adding 'cool_seq_tool/resources/status.py' 2025-10-29T19:45:48,382 adding 'cool_seq_tool/resources/transcript_mapping.tsv' 2025-10-29T19:45:48,532 adding 'cool_seq_tool/sources/__init__.py' 2025-10-29T19:45:48,534 adding 'cool_seq_tool/sources/mane_transcript_mappings.py' 2025-10-29T19:45:48,535 adding 'cool_seq_tool/sources/transcript_mappings.py' 2025-10-29T19:45:48,539 adding 'cool_seq_tool/sources/uta_database.py' 2025-10-29T19:45:48,542 adding 'cool_seq_tool-0.15.1.dist-info/licenses/LICENSE' 2025-10-29T19:45:48,544 adding 'cool_seq_tool-0.15.1.dist-info/METADATA' 2025-10-29T19:45:48,545 adding 'cool_seq_tool-0.15.1.dist-info/WHEEL' 2025-10-29T19:45:48,546 adding 'cool_seq_tool-0.15.1.dist-info/top_level.txt' 2025-10-29T19:45:48,547 adding 'cool_seq_tool-0.15.1.dist-info/RECORD' 2025-10-29T19:45:48,609 removing build/bdist.linux-armv7l/wheel 2025-10-29T19:45:48,730 Building wheel for cool-seq-tool (pyproject.toml): finished with status 'done' 2025-10-29T19:45:48,807 Created wheel for cool-seq-tool: filename=cool_seq_tool-0.15.1-py3-none-any.whl size=4046654 sha256=a042bd9984803ac7b5c20e05c536f3f9f3e512d282873634f216cb9f735698bd 2025-10-29T19:45:48,808 Stored in directory: /tmp/pip-ephem-wheel-cache-j3p8wgdh/wheels/69/86/12/406879bf5503654426e79435521c6d477b5ec18f66a6fd6799 2025-10-29T19:45:48,822 Successfully built cool-seq-tool 2025-10-29T19:45:48,966 Removed build tracker: '/tmp/pip-build-tracker-90hwfpzt'