2025-10-29T23:05:36,197 Created temporary directory: /tmp/pip-ephem-wheel-cache-45gbwb0e 2025-10-29T23:05:36,199 Created temporary directory: /tmp/pip-build-tracker-59cnu8yr 2025-10-29T23:05:36,199 Initialized build tracking at /tmp/pip-build-tracker-59cnu8yr 2025-10-29T23:05:36,200 Created build tracker: /tmp/pip-build-tracker-59cnu8yr 2025-10-29T23:05:36,200 Entered build tracker: /tmp/pip-build-tracker-59cnu8yr 2025-10-29T23:05:36,201 Created temporary directory: /tmp/pip-wheel-a22qyb34 2025-10-29T23:05:36,204 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-29T23:05:36,206 Created temporary directory: /tmp/pip-ephem-wheel-cache-k796hbr2 2025-10-29T23:05:36,230 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-29T23:05:36,234 2 location(s) to search for versions of bioontologies: 2025-10-29T23:05:36,234 * https://pypi.org/simple/bioontologies/ 2025-10-29T23:05:36,234 * https://www.piwheels.org/simple/bioontologies/ 2025-10-29T23:05:36,235 Fetching project page and analyzing links: https://pypi.org/simple/bioontologies/ 2025-10-29T23:05:36,236 Getting page https://pypi.org/simple/bioontologies/ 2025-10-29T23:05:36,237 Found index url https://pypi.org/simple 2025-10-29T23:05:36,452 Fetched page https://pypi.org/simple/bioontologies/ as application/vnd.pypi.simple.v1+json 2025-10-29T23:05:36,463 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/02/70/0e872793ea49436026685bb3d51079af3947bb9a699e4ed5ff9550c83310/bioontologies-0.0.1-py3-none-any.whl (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2025-10-29T23:05:36,464 Found link https://files.pythonhosted.org/packages/e8/9d/8acb7f9144335763c181e32d20062cc121aa2faf6c7d00a44b57533cb766/bioontologies-0.0.1.tar.gz (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8), version: 0.0.1 2025-10-29T23:05:36,465 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/09/50/0e253b578e62eafa162c52627a5f737f83403f62253ce52f40415b75e7c8/bioontologies-0.0.2-py3-none-any.whl (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.8) 2025-10-29T23:05:36,466 Found link https://files.pythonhosted.org/packages/26/5e/66b7a336501576cd1abdec05eeba85455bf8dff4f57f4e7f0f51a1815b31/bioontologies-0.0.2.tar.gz (from https://pypi.org/simple/bioontologies/) 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https://files.pythonhosted.org/packages/54/07/7058818b0cf673515d2dbd3f35fd12be994a95e3a3e9e4d898911381dfea/bioontologies-0.7.4-py3-none-any.whl (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10) 2025-10-29T23:05:36,509 Found link https://files.pythonhosted.org/packages/95/a3/d88d7633250cc059d598017425dd7f899d3d37ee4b8835d2aa2aa58ed8d4/bioontologies-0.7.4.tar.gz (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10), version: 0.7.4 2025-10-29T23:05:36,510 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioontologies/ 2025-10-29T23:05:36,511 Getting page https://www.piwheels.org/simple/bioontologies/ 2025-10-29T23:05:36,512 Found index url https://www.piwheels.org/simple 2025-10-29T23:05:36,675 Fetched page https://www.piwheels.org/simple/bioontologies/ as text/html 2025-10-29T23:05:36,684 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.7.3-py3-none-any.whl#sha256=1b84212b20d45c37f10400e7361e3624fa88f1342f827530baf741ee75b2dcc0 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2025-10-29T23:05:36,684 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.7.2-py3-none-any.whl#sha256=232c2fb1df81927301dadd05121a0e1a61c7c5ecbc370ba4a1e9f4aaa9bbed5c (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2025-10-29T23:05:36,685 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.7.1-py3-none-any.whl#sha256=aca2f507085580db1150ddde9155e22718e10b3719f5500056fdb0cdcd9d4dd8 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2025-10-29T23:05:36,686 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.7.0-py3-none-any.whl#sha256=bddff6e1d4045ce870bda18ad1883767c2ab2a29163af72e3845dc22ec503147 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2025-10-29T23:05:36,686 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.6.0-py3-none-any.whl#sha256=2ccb93ede2740e42cd25d9ec2cdf2216fbd647dbfbed96c840007ad12388a8a1 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2025-10-29T23:05:36,687 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.5.2-py3-none-any.whl#sha256=56de98f27a051016fa9974b6af2d0f173d32634c6e7da2dc2b138cbb3d712940 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2025-10-29T23:05:36,687 Skipping link: No binaries permitted for bioontologies: 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https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.1.1-py3-none-any.whl#sha256=88d6734db023167440ca13719d9900571fed79570cffb5c77594885ee21180b7 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2025-10-29T23:05:36,696 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.1.0-py3-none-any.whl#sha256=6b2521788855b76e2f16e3ec55bcbe578508c5e860badaa6f5fb3ae85a665648 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2025-10-29T23:05:36,697 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.0.5-py3-none-any.whl#sha256=d3bf993999fa7233d2cc31a0fb44bcb35b3d96c91c4e658a2ee1df703edc990f (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2025-10-29T23:05:36,698 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.0.4-py3-none-any.whl#sha256=66bef33f75863d0e93f29b8a0dc2aadbbd63ce22ad7154c1d2a7f418ef5f5d4c (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.7) 2025-10-29T23:05:36,698 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.0.3-py3-none-any.whl#sha256=b5867e31daa04edec6c19aefe40d2fb800c6dc6e3efeeb648ff9705976b5ff3e (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2025-10-29T23:05:36,699 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.0.2-py3-none-any.whl#sha256=15a6029a370c2eb76d9c80ab6a4a61f34d97c2336cc3cde43a7d9d33a60a4328 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2025-10-29T23:05:36,699 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.0.1-py3-none-any.whl#sha256=451449226ac2c5784b10d63cdb52cea7fcc466897d1cc58bc103c14aa3f3234c (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.8) 2025-10-29T23:05:36,700 Skipping link: not a file: https://www.piwheels.org/simple/bioontologies/ 2025-10-29T23:05:36,700 Skipping link: not a file: https://pypi.org/simple/bioontologies/ 2025-10-29T23:05:36,722 Given no hashes to check 1 links for project 'bioontologies': discarding no candidates 2025-10-29T23:05:36,740 Collecting bioontologies==0.7.4 2025-10-29T23:05:36,743 Created temporary directory: /tmp/pip-unpack-n6pc2zz7 2025-10-29T23:05:36,950 Downloading bioontologies-0.7.4.tar.gz (51 kB) 2025-10-29T23:05:37,073 Added bioontologies==0.7.4 from https://files.pythonhosted.org/packages/95/a3/d88d7633250cc059d598017425dd7f899d3d37ee4b8835d2aa2aa58ed8d4/bioontologies-0.7.4.tar.gz to build tracker '/tmp/pip-build-tracker-59cnu8yr' 2025-10-29T23:05:37,081 Created temporary directory: /tmp/pip-build-env-h5y6dd87 2025-10-29T23:05:37,086 Installing build dependencies: started 2025-10-29T23:05:37,087 Running command pip subprocess to install build dependencies 2025-10-29T23:05:38,233 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-29T23:05:38,844 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-29T23:05:38,868 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-29T23:05:40,605 Collecting setuptools 2025-10-29T23:05:40,708 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-29T23:05:40,983 Collecting wheel 2025-10-29T23:05:41,000 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-10-29T23:05:43,925 Installing collected packages: wheel, setuptools 2025-10-29T23:05:44,174 Creating /tmp/pip-build-env-h5y6dd87/overlay/local/bin 2025-10-29T23:05:44,176 changing mode of /tmp/pip-build-env-h5y6dd87/overlay/local/bin/wheel to 755 2025-10-29T23:05:47,956 Successfully installed setuptools-80.9.0 wheel-0.45.1 2025-10-29T23:05:48,229 Installing build dependencies: finished with status 'done' 2025-10-29T23:05:48,236 Getting requirements to build wheel: started 2025-10-29T23:05:48,237 Running command Getting requirements to build wheel 2025-10-29T23:05:48,861 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-29T23:05:48,862 !! 2025-10-29T23:05:48,863 ******************************************************************************** 2025-10-29T23:05:48,863 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-29T23:05:48,864 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-29T23:05:48,865 or your builds will no longer be supported. 2025-10-29T23:05:48,866 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:48,866 ******************************************************************************** 2025-10-29T23:05:48,868 !! 2025-10-29T23:05:48,868 corresp(dist, value, root_dir) 2025-10-29T23:05:48,951 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T23:05:48,952 !! 2025-10-29T23:05:48,953 ******************************************************************************** 2025-10-29T23:05:48,953 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T23:05:48,955 License :: OSI Approved :: MIT License 2025-10-29T23:05:48,956 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:48,957 ******************************************************************************** 2025-10-29T23:05:48,958 !! 2025-10-29T23:05:48,958 dist._finalize_license_expression() 2025-10-29T23:05:48,959 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T23:05:48,959 !! 2025-10-29T23:05:48,960 ******************************************************************************** 2025-10-29T23:05:48,961 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T23:05:48,962 License :: OSI Approved :: MIT License 2025-10-29T23:05:48,963 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:48,964 ******************************************************************************** 2025-10-29T23:05:48,965 !! 2025-10-29T23:05:48,966 self._finalize_license_expression() 2025-10-29T23:05:48,966 running egg_info 2025-10-29T23:05:48,974 writing src/bioontologies.egg-info/PKG-INFO 2025-10-29T23:05:48,980 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2025-10-29T23:05:48,982 writing entry points to src/bioontologies.egg-info/entry_points.txt 2025-10-29T23:05:48,985 writing requirements to src/bioontologies.egg-info/requires.txt 2025-10-29T23:05:48,987 writing top-level names to src/bioontologies.egg-info/top_level.txt 2025-10-29T23:05:49,013 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2025-10-29T23:05:49,017 reading manifest template 'MANIFEST.in' 2025-10-29T23:05:49,021 no previously-included directories found matching 'scripts' 2025-10-29T23:05:49,021 no previously-included directories found matching 'notebooks' 2025-10-29T23:05:49,022 no previously-included directories found matching 'tests/.pytest_cache' 2025-10-29T23:05:49,023 no previously-included directories found matching 'docs' 2025-10-29T23:05:49,024 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-10-29T23:05:49,024 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-10-29T23:05:49,025 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-10-29T23:05:49,026 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2025-10-29T23:05:49,026 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-10-29T23:05:49,027 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2025-10-29T23:05:49,028 warning: no previously-included files matching '.idea/**' found anywhere in distribution 2025-10-29T23:05:49,029 warning: no previously-included files found matching 'tox.ini' 2025-10-29T23:05:49,029 warning: no previously-included files found matching '.readthedocs.yml' 2025-10-29T23:05:49,030 warning: no previously-included files found matching '.cruft.json' 2025-10-29T23:05:49,030 adding license file 'LICENSE' 2025-10-29T23:05:49,034 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2025-10-29T23:05:49,131 Getting requirements to build wheel: finished with status 'done' 2025-10-29T23:05:49,134 Created temporary directory: /tmp/pip-modern-metadata-36jdmbue 2025-10-29T23:05:49,137 Preparing metadata (pyproject.toml): started 2025-10-29T23:05:49,138 Running command Preparing metadata (pyproject.toml) 2025-10-29T23:05:49,708 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-29T23:05:49,709 !! 2025-10-29T23:05:49,710 ******************************************************************************** 2025-10-29T23:05:49,710 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-29T23:05:49,711 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-29T23:05:49,712 or your builds will no longer be supported. 2025-10-29T23:05:49,713 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:49,714 ******************************************************************************** 2025-10-29T23:05:49,715 !! 2025-10-29T23:05:49,716 corresp(dist, value, root_dir) 2025-10-29T23:05:49,803 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T23:05:49,803 !! 2025-10-29T23:05:49,805 ******************************************************************************** 2025-10-29T23:05:49,805 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T23:05:49,806 License :: OSI Approved :: MIT License 2025-10-29T23:05:49,808 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:49,808 ******************************************************************************** 2025-10-29T23:05:49,809 !! 2025-10-29T23:05:49,810 dist._finalize_license_expression() 2025-10-29T23:05:49,810 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T23:05:49,811 !! 2025-10-29T23:05:49,812 ******************************************************************************** 2025-10-29T23:05:49,812 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T23:05:49,813 License :: OSI Approved :: MIT License 2025-10-29T23:05:49,814 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:49,814 ******************************************************************************** 2025-10-29T23:05:49,815 !! 2025-10-29T23:05:49,816 self._finalize_license_expression() 2025-10-29T23:05:49,818 running dist_info 2025-10-29T23:05:49,830 creating /tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info 2025-10-29T23:05:49,831 writing /tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/PKG-INFO 2025-10-29T23:05:49,838 writing dependency_links to /tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/dependency_links.txt 2025-10-29T23:05:49,840 writing entry points to /tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/entry_points.txt 2025-10-29T23:05:49,843 writing requirements to /tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/requires.txt 2025-10-29T23:05:49,844 writing top-level names to /tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/top_level.txt 2025-10-29T23:05:49,845 writing manifest file '/tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/SOURCES.txt' 2025-10-29T23:05:49,870 reading manifest file '/tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/SOURCES.txt' 2025-10-29T23:05:49,872 reading manifest template 'MANIFEST.in' 2025-10-29T23:05:49,876 no previously-included directories found matching 'scripts' 2025-10-29T23:05:49,877 no previously-included directories found matching 'notebooks' 2025-10-29T23:05:49,878 no previously-included directories found matching 'tests/.pytest_cache' 2025-10-29T23:05:49,878 no previously-included directories found matching 'docs' 2025-10-29T23:05:49,879 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-10-29T23:05:49,880 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-10-29T23:05:49,880 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-10-29T23:05:49,881 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2025-10-29T23:05:49,882 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-10-29T23:05:49,882 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2025-10-29T23:05:49,883 warning: no previously-included files matching '.idea/**' found anywhere in distribution 2025-10-29T23:05:49,884 warning: no previously-included files found matching 'tox.ini' 2025-10-29T23:05:49,884 warning: no previously-included files found matching '.readthedocs.yml' 2025-10-29T23:05:49,885 warning: no previously-included files found matching '.cruft.json' 2025-10-29T23:05:49,886 adding license file 'LICENSE' 2025-10-29T23:05:49,889 writing manifest file '/tmp/pip-modern-metadata-36jdmbue/bioontologies.egg-info/SOURCES.txt' 2025-10-29T23:05:49,890 creating '/tmp/pip-modern-metadata-36jdmbue/bioontologies-0.7.4.dist-info' 2025-10-29T23:05:50,017 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-29T23:05:50,022 Source in /tmp/pip-wheel-a22qyb34/bioontologies_90eb06a636454ef48474f004e85419e8 has version 0.7.4, which satisfies requirement bioontologies==0.7.4 from https://files.pythonhosted.org/packages/95/a3/d88d7633250cc059d598017425dd7f899d3d37ee4b8835d2aa2aa58ed8d4/bioontologies-0.7.4.tar.gz 2025-10-29T23:05:50,023 Removed bioontologies==0.7.4 from https://files.pythonhosted.org/packages/95/a3/d88d7633250cc059d598017425dd7f899d3d37ee4b8835d2aa2aa58ed8d4/bioontologies-0.7.4.tar.gz from build tracker '/tmp/pip-build-tracker-59cnu8yr' 2025-10-29T23:05:50,031 Created temporary directory: /tmp/pip-unpack-zfh3ujdf 2025-10-29T23:05:50,032 Building wheels for collected packages: bioontologies 2025-10-29T23:05:50,036 Created temporary directory: /tmp/pip-wheel-gmvhk3pt 2025-10-29T23:05:50,037 Destination directory: /tmp/pip-wheel-gmvhk3pt 2025-10-29T23:05:50,039 Building wheel for bioontologies (pyproject.toml): started 2025-10-29T23:05:50,040 Running command Building wheel for bioontologies (pyproject.toml) 2025-10-29T23:05:50,590 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-10-29T23:05:50,590 !! 2025-10-29T23:05:50,591 ******************************************************************************** 2025-10-29T23:05:50,591 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-10-29T23:05:50,592 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-10-29T23:05:50,593 or your builds will no longer be supported. 2025-10-29T23:05:50,594 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:50,594 ******************************************************************************** 2025-10-29T23:05:50,595 !! 2025-10-29T23:05:50,596 corresp(dist, value, root_dir) 2025-10-29T23:05:50,667 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T23:05:50,667 !! 2025-10-29T23:05:50,669 ******************************************************************************** 2025-10-29T23:05:50,669 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T23:05:50,670 License :: OSI Approved :: MIT License 2025-10-29T23:05:50,671 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:50,672 ******************************************************************************** 2025-10-29T23:05:50,673 !! 2025-10-29T23:05:50,674 dist._finalize_license_expression() 2025-10-29T23:05:50,675 /tmp/pip-build-env-h5y6dd87/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-10-29T23:05:50,675 !! 2025-10-29T23:05:50,676 ******************************************************************************** 2025-10-29T23:05:50,677 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-10-29T23:05:50,678 License :: OSI Approved :: MIT License 2025-10-29T23:05:50,679 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-10-29T23:05:50,680 ******************************************************************************** 2025-10-29T23:05:50,681 !! 2025-10-29T23:05:50,681 self._finalize_license_expression() 2025-10-29T23:05:50,682 running bdist_wheel 2025-10-29T23:05:50,698 running build 2025-10-29T23:05:50,698 running build_py 2025-10-29T23:05:50,705 creating build/lib/bioontologies 2025-10-29T23:05:50,708 copying src/bioontologies/ner.py -> build/lib/bioontologies 2025-10-29T23:05:50,711 copying src/bioontologies/gilda_utils.py -> build/lib/bioontologies 2025-10-29T23:05:50,713 copying src/bioontologies/__init__.py -> build/lib/bioontologies 2025-10-29T23:05:50,715 copying src/bioontologies/__main__.py -> build/lib/bioontologies 2025-10-29T23:05:50,717 copying src/bioontologies/robot.py -> build/lib/bioontologies 2025-10-29T23:05:50,720 copying src/bioontologies/obograph.py -> build/lib/bioontologies 2025-10-29T23:05:50,723 copying src/bioontologies/cli.py -> build/lib/bioontologies 2025-10-29T23:05:50,725 copying src/bioontologies/constants.py -> build/lib/bioontologies 2025-10-29T23:05:50,728 copying src/bioontologies/version.py -> build/lib/bioontologies 2025-10-29T23:05:50,731 creating build/lib/bioontologies/relations 2025-10-29T23:05:50,732 copying src/bioontologies/relations/api.py -> build/lib/bioontologies/relations 2025-10-29T23:05:50,734 copying src/bioontologies/relations/__init__.py -> build/lib/bioontologies/relations 2025-10-29T23:05:50,737 creating build/lib/bioontologies/upgrade 2025-10-29T23:05:50,738 copying src/bioontologies/upgrade/__init__.py -> build/lib/bioontologies/upgrade 2025-10-29T23:05:50,741 copying src/bioontologies/upgrade/import_debio.py -> build/lib/bioontologies/upgrade 2025-10-29T23:05:50,742 running egg_info 2025-10-29T23:05:50,754 writing src/bioontologies.egg-info/PKG-INFO 2025-10-29T23:05:50,760 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2025-10-29T23:05:50,762 writing entry points to src/bioontologies.egg-info/entry_points.txt 2025-10-29T23:05:50,764 writing requirements to src/bioontologies.egg-info/requires.txt 2025-10-29T23:05:50,765 writing top-level names to src/bioontologies.egg-info/top_level.txt 2025-10-29T23:05:50,780 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2025-10-29T23:05:50,783 reading manifest template 'MANIFEST.in' 2025-10-29T23:05:50,787 no previously-included directories found matching 'scripts' 2025-10-29T23:05:50,788 no previously-included directories found matching 'notebooks' 2025-10-29T23:05:50,788 no previously-included directories found matching 'tests/.pytest_cache' 2025-10-29T23:05:50,789 no previously-included directories found matching 'docs' 2025-10-29T23:05:50,790 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2025-10-29T23:05:50,791 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2025-10-29T23:05:50,792 warning: no previously-included files matching '*.so' found anywhere in distribution 2025-10-29T23:05:50,793 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2025-10-29T23:05:50,793 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2025-10-29T23:05:50,794 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2025-10-29T23:05:50,795 warning: no previously-included files matching '.idea/**' found anywhere in distribution 2025-10-29T23:05:50,796 warning: no previously-included files found matching 'tox.ini' 2025-10-29T23:05:50,796 warning: no previously-included files found matching '.readthedocs.yml' 2025-10-29T23:05:50,797 warning: no previously-included files found matching '.cruft.json' 2025-10-29T23:05:50,798 adding license file 'LICENSE' 2025-10-29T23:05:50,802 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2025-10-29T23:05:50,807 copying src/bioontologies/py.typed -> build/lib/bioontologies 2025-10-29T23:05:50,813 copying src/bioontologies/relations/data.json -> build/lib/bioontologies/relations 2025-10-29T23:05:50,818 copying src/bioontologies/relations/data_owl.json -> build/lib/bioontologies/relations 2025-10-29T23:05:50,820 copying src/bioontologies/relations/data_rdf.json -> build/lib/bioontologies/relations 2025-10-29T23:05:50,822 copying src/bioontologies/relations/data_rdfs.json -> build/lib/bioontologies/relations 2025-10-29T23:05:50,825 copying src/bioontologies/upgrade/data.tsv -> build/lib/bioontologies/upgrade 2025-10-29T23:05:50,840 installing to build/bdist.linux-armv7l/wheel 2025-10-29T23:05:50,841 running install 2025-10-29T23:05:50,864 running install_lib 2025-10-29T23:05:50,870 creating build/bdist.linux-armv7l/wheel 2025-10-29T23:05:50,872 creating build/bdist.linux-armv7l/wheel/bioontologies 2025-10-29T23:05:50,873 copying build/lib/bioontologies/ner.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,876 copying build/lib/bioontologies/gilda_utils.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,877 copying build/lib/bioontologies/__init__.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,879 copying build/lib/bioontologies/__main__.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,881 copying build/lib/bioontologies/robot.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,883 copying build/lib/bioontologies/obograph.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,886 copying build/lib/bioontologies/cli.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,888 creating build/bdist.linux-armv7l/wheel/bioontologies/relations 2025-10-29T23:05:50,889 copying build/lib/bioontologies/relations/api.py -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2025-10-29T23:05:50,892 copying build/lib/bioontologies/relations/__init__.py -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2025-10-29T23:05:50,893 copying build/lib/bioontologies/relations/data_rdfs.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2025-10-29T23:05:50,895 copying build/lib/bioontologies/relations/data.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2025-10-29T23:05:50,901 copying build/lib/bioontologies/relations/data_owl.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2025-10-29T23:05:50,903 copying build/lib/bioontologies/relations/data_rdf.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2025-10-29T23:05:50,905 copying build/lib/bioontologies/constants.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,907 copying build/lib/bioontologies/version.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,909 copying build/lib/bioontologies/py.typed -> build/bdist.linux-armv7l/wheel/./bioontologies 2025-10-29T23:05:50,911 creating build/bdist.linux-armv7l/wheel/bioontologies/upgrade 2025-10-29T23:05:50,912 copying build/lib/bioontologies/upgrade/__init__.py -> build/bdist.linux-armv7l/wheel/./bioontologies/upgrade 2025-10-29T23:05:50,914 copying build/lib/bioontologies/upgrade/data.tsv -> build/bdist.linux-armv7l/wheel/./bioontologies/upgrade 2025-10-29T23:05:50,917 copying build/lib/bioontologies/upgrade/import_debio.py -> build/bdist.linux-armv7l/wheel/./bioontologies/upgrade 2025-10-29T23:05:50,919 running install_egg_info 2025-10-29T23:05:50,925 Copying src/bioontologies.egg-info to build/bdist.linux-armv7l/wheel/./bioontologies-0.7.4-py3.11.egg-info 2025-10-29T23:05:50,936 running install_scripts 2025-10-29T23:05:50,949 creating build/bdist.linux-armv7l/wheel/bioontologies-0.7.4.dist-info/WHEEL 2025-10-29T23:05:50,952 creating '/tmp/pip-wheel-gmvhk3pt/.tmp-hdo5336p/bioontologies-0.7.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-29T23:05:50,954 adding 'bioontologies/__init__.py' 2025-10-29T23:05:50,955 adding 'bioontologies/__main__.py' 2025-10-29T23:05:50,957 adding 'bioontologies/cli.py' 2025-10-29T23:05:50,959 adding 'bioontologies/constants.py' 2025-10-29T23:05:50,960 adding 'bioontologies/gilda_utils.py' 2025-10-29T23:05:50,962 adding 'bioontologies/ner.py' 2025-10-29T23:05:50,967 adding 'bioontologies/obograph.py' 2025-10-29T23:05:50,968 adding 'bioontologies/py.typed' 2025-10-29T23:05:50,971 adding 'bioontologies/robot.py' 2025-10-29T23:05:50,972 adding 'bioontologies/version.py' 2025-10-29T23:05:50,974 adding 'bioontologies/relations/__init__.py' 2025-10-29T23:05:50,976 adding 'bioontologies/relations/api.py' 2025-10-29T23:05:50,983 adding 'bioontologies/relations/data.json' 2025-10-29T23:05:50,985 adding 'bioontologies/relations/data_owl.json' 2025-10-29T23:05:50,986 adding 'bioontologies/relations/data_rdf.json' 2025-10-29T23:05:50,987 adding 'bioontologies/relations/data_rdfs.json' 2025-10-29T23:05:50,989 adding 'bioontologies/upgrade/__init__.py' 2025-10-29T23:05:50,991 adding 'bioontologies/upgrade/data.tsv' 2025-10-29T23:05:50,992 adding 'bioontologies/upgrade/import_debio.py' 2025-10-29T23:05:50,994 adding 'bioontologies-0.7.4.dist-info/licenses/LICENSE' 2025-10-29T23:05:50,997 adding 'bioontologies-0.7.4.dist-info/METADATA' 2025-10-29T23:05:50,998 adding 'bioontologies-0.7.4.dist-info/WHEEL' 2025-10-29T23:05:50,999 adding 'bioontologies-0.7.4.dist-info/entry_points.txt' 2025-10-29T23:05:51,000 adding 'bioontologies-0.7.4.dist-info/top_level.txt' 2025-10-29T23:05:51,000 adding 'bioontologies-0.7.4.dist-info/RECORD' 2025-10-29T23:05:51,002 removing build/bdist.linux-armv7l/wheel 2025-10-29T23:05:51,108 Building wheel for bioontologies (pyproject.toml): finished with status 'done' 2025-10-29T23:05:51,114 Created wheel for bioontologies: filename=bioontologies-0.7.4-py3-none-any.whl size=48608 sha256=51e60580ea06e1230c56686ba441e1b3cd74a8bdc22742688817a5e5cb9bc2d6 2025-10-29T23:05:51,115 Stored in directory: /tmp/pip-ephem-wheel-cache-k796hbr2/wheels/94/3a/f6/6aeb6e2ff3d75ecd2b4857d7369116181dfa04e40d988a999d 2025-10-29T23:05:51,129 Successfully built bioontologies 2025-10-29T23:05:51,134 Removed build tracker: '/tmp/pip-build-tracker-59cnu8yr'