2025-10-30T22:25:21,654 Created temporary directory: /tmp/pip-ephem-wheel-cache-t0zemb0v 2025-10-30T22:25:21,656 Created temporary directory: /tmp/pip-build-tracker-s5vfxb_z 2025-10-30T22:25:21,657 Initialized build tracking at /tmp/pip-build-tracker-s5vfxb_z 2025-10-30T22:25:21,657 Created build tracker: /tmp/pip-build-tracker-s5vfxb_z 2025-10-30T22:25:21,658 Entered build tracker: /tmp/pip-build-tracker-s5vfxb_z 2025-10-30T22:25:21,659 Created temporary directory: /tmp/pip-wheel-qie6azbw 2025-10-30T22:25:21,662 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-30T22:25:21,664 Created temporary directory: /tmp/pip-ephem-wheel-cache-rncqi8ud 2025-10-30T22:25:21,686 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-30T22:25:21,690 2 location(s) to search for versions of edam-ontology: 2025-10-30T22:25:21,690 * https://pypi.org/simple/edam-ontology/ 2025-10-30T22:25:21,690 * https://www.piwheels.org/simple/edam-ontology/ 2025-10-30T22:25:21,690 Fetching project page and analyzing links: https://pypi.org/simple/edam-ontology/ 2025-10-30T22:25:21,691 Getting page https://pypi.org/simple/edam-ontology/ 2025-10-30T22:25:21,693 Found index url https://pypi.org/simple 2025-10-30T22:25:21,906 Fetched page https://pypi.org/simple/edam-ontology/ as application/vnd.pypi.simple.v1+json 2025-10-30T22:25:21,908 Found link https://files.pythonhosted.org/packages/dc/eb/37e2987706d4d8225fdf32db528d57c105a77af48e5e526a1f2d82db2806/edam-ontology-1.25.2.dev0.tar.gz (from https://pypi.org/simple/edam-ontology/), version: 1.25.2.dev0 2025-10-30T22:25:21,909 Skipping link: No binaries permitted for edam-ontology: https://files.pythonhosted.org/packages/2b/ee/ddfb72887374d1c2c0f6b82d6153e14e2a3e25bbf40614a7d380fb659f60/edam_ontology-1.25.2.dev0-py2.py3-none-any.whl (from https://pypi.org/simple/edam-ontology/) 2025-10-30T22:25:21,909 Found link https://files.pythonhosted.org/packages/16/69/05136c99024ecd7772780db55018535a7f8bf42cd8e33690da80783b1cf2/edam-ontology-1.25.2.tar.gz (from https://pypi.org/simple/edam-ontology/), version: 1.25.2 2025-10-30T22:25:21,910 Skipping link: No binaries permitted for edam-ontology: https://files.pythonhosted.org/packages/72/11/2ce89a7d5f018bce4c8aa26f815f0001774f9594afa17396aced9de52b0a/edam_ontology-1.25.2-py2.py3-none-any.whl (from https://pypi.org/simple/edam-ontology/) 2025-10-30T22:25:21,911 Skipping link: No binaries permitted for edam-ontology: https://files.pythonhosted.org/packages/ec/17/d9ad109c8d7f05e6e78a79c4ec410ad3d38877b3efe18896eae6c446b534/edam_ontology-1.25.3-py3-none-any.whl (from https://pypi.org/simple/edam-ontology/) (requires-python:>=3.9) 2025-10-30T22:25:21,912 Found link https://files.pythonhosted.org/packages/c9/b5/21bfc8c04e15418d0bf3813fb7f7cd57f027c687df82df354ee42e574d18/edam_ontology-1.25.3.tar.gz (from https://pypi.org/simple/edam-ontology/) (requires-python:>=3.9), version: 1.25.3 2025-10-30T22:25:21,913 Fetching project page and analyzing links: https://www.piwheels.org/simple/edam-ontology/ 2025-10-30T22:25:21,914 Getting page https://www.piwheels.org/simple/edam-ontology/ 2025-10-30T22:25:21,915 Found index url https://www.piwheels.org/simple 2025-10-30T22:25:22,078 Fetched page https://www.piwheels.org/simple/edam-ontology/ as text/html 2025-10-30T22:25:22,079 Skipping link: No binaries permitted for edam-ontology: https://archive1.piwheels.org/simple/edam-ontology/edam_ontology-1.25.2-py2.py3-none-any.whl#sha256=df39f4e3257f6f5836c07a17bfb9591168e15f921c7ed681e8530e764fba5934 (from https://www.piwheels.org/simple/edam-ontology/) 2025-10-30T22:25:22,080 Skipping link: No binaries permitted for edam-ontology: https://archive1.piwheels.org/simple/edam-ontology/edam_ontology-1.25.2.dev0-py2.py3-none-any.whl#sha256=39f89e894f82293951777d7c2ea099f2321dfa353742d2e2dc4671bdd698ec94 (from https://www.piwheels.org/simple/edam-ontology/) 2025-10-30T22:25:22,081 Skipping link: not a file: https://www.piwheels.org/simple/edam-ontology/ 2025-10-30T22:25:22,082 Skipping link: not a file: https://pypi.org/simple/edam-ontology/ 2025-10-30T22:25:22,101 Given no hashes to check 1 links for project 'edam-ontology': discarding no candidates 2025-10-30T22:25:22,119 Collecting edam-ontology==1.25.3 2025-10-30T22:25:22,121 Created temporary directory: /tmp/pip-unpack-n6plmooe 2025-10-30T22:25:22,255 Downloading edam_ontology-1.25.3.tar.gz (258 kB) 2025-10-30T22:25:22,436 Added edam-ontology==1.25.3 from https://files.pythonhosted.org/packages/c9/b5/21bfc8c04e15418d0bf3813fb7f7cd57f027c687df82df354ee42e574d18/edam_ontology-1.25.3.tar.gz to build tracker '/tmp/pip-build-tracker-s5vfxb_z' 2025-10-30T22:25:22,440 Created temporary directory: /tmp/pip-build-env-5fgtd50r 2025-10-30T22:25:22,445 Installing build dependencies: started 2025-10-30T22:25:22,446 Running command pip subprocess to install build dependencies 2025-10-30T22:25:23,608 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-10-30T22:25:24,198 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-10-30T22:25:24,221 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-10-30T22:25:25,940 Collecting setuptools 2025-10-30T22:25:26,054 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-10-30T22:25:28,957 Installing collected packages: setuptools 2025-10-30T22:25:32,578 Successfully installed setuptools-80.9.0 2025-10-30T22:25:32,847 Installing build dependencies: finished with status 'done' 2025-10-30T22:25:32,853 Getting requirements to build wheel: started 2025-10-30T22:25:32,854 Running command Getting requirements to build wheel 2025-10-30T22:25:33,531 running egg_info 2025-10-30T22:25:33,538 writing edam_ontology.egg-info/PKG-INFO 2025-10-30T22:25:33,542 writing dependency_links to edam_ontology.egg-info/dependency_links.txt 2025-10-30T22:25:33,545 writing top-level names to edam_ontology.egg-info/top_level.txt 2025-10-30T22:25:33,566 reading manifest file 'edam_ontology.egg-info/SOURCES.txt' 2025-10-30T22:25:33,568 reading manifest template 'MANIFEST.in' 2025-10-30T22:25:33,572 adding license file 'LICENSE' 2025-10-30T22:25:33,575 writing manifest file 'edam_ontology.egg-info/SOURCES.txt' 2025-10-30T22:25:33,673 Getting requirements to build wheel: finished with status 'done' 2025-10-30T22:25:33,676 Created temporary directory: /tmp/pip-modern-metadata-cm7eppvu 2025-10-30T22:25:33,679 Preparing metadata (pyproject.toml): started 2025-10-30T22:25:33,680 Running command Preparing metadata (pyproject.toml) 2025-10-30T22:25:34,327 running dist_info 2025-10-30T22:25:34,340 creating /tmp/pip-modern-metadata-cm7eppvu/edam_ontology.egg-info 2025-10-30T22:25:34,341 writing /tmp/pip-modern-metadata-cm7eppvu/edam_ontology.egg-info/PKG-INFO 2025-10-30T22:25:34,344 writing dependency_links to /tmp/pip-modern-metadata-cm7eppvu/edam_ontology.egg-info/dependency_links.txt 2025-10-30T22:25:34,346 writing top-level names to /tmp/pip-modern-metadata-cm7eppvu/edam_ontology.egg-info/top_level.txt 2025-10-30T22:25:34,348 writing manifest file '/tmp/pip-modern-metadata-cm7eppvu/edam_ontology.egg-info/SOURCES.txt' 2025-10-30T22:25:34,367 reading manifest file '/tmp/pip-modern-metadata-cm7eppvu/edam_ontology.egg-info/SOURCES.txt' 2025-10-30T22:25:34,369 reading manifest template 'MANIFEST.in' 2025-10-30T22:25:34,372 adding license file 'LICENSE' 2025-10-30T22:25:34,375 writing manifest file '/tmp/pip-modern-metadata-cm7eppvu/edam_ontology.egg-info/SOURCES.txt' 2025-10-30T22:25:34,376 creating '/tmp/pip-modern-metadata-cm7eppvu/edam_ontology-1.25.3.dist-info' 2025-10-30T22:25:34,496 Preparing metadata (pyproject.toml): finished with status 'done' 2025-10-30T22:25:34,500 Source in /tmp/pip-wheel-qie6azbw/edam-ontology_2af56e47f4f44bab87a29c30aacb995a has version 1.25.3, which satisfies requirement edam-ontology==1.25.3 from https://files.pythonhosted.org/packages/c9/b5/21bfc8c04e15418d0bf3813fb7f7cd57f027c687df82df354ee42e574d18/edam_ontology-1.25.3.tar.gz 2025-10-30T22:25:34,501 Removed edam-ontology==1.25.3 from https://files.pythonhosted.org/packages/c9/b5/21bfc8c04e15418d0bf3813fb7f7cd57f027c687df82df354ee42e574d18/edam_ontology-1.25.3.tar.gz from build tracker '/tmp/pip-build-tracker-s5vfxb_z' 2025-10-30T22:25:34,507 Created temporary directory: /tmp/pip-unpack-830jn9dh 2025-10-30T22:25:34,507 Building wheels for collected packages: edam-ontology 2025-10-30T22:25:34,511 Created temporary directory: /tmp/pip-wheel-mhf1wbgf 2025-10-30T22:25:34,512 Destination directory: /tmp/pip-wheel-mhf1wbgf 2025-10-30T22:25:34,514 Building wheel for edam-ontology (pyproject.toml): started 2025-10-30T22:25:34,515 Running command Building wheel for edam-ontology (pyproject.toml) 2025-10-30T22:25:35,130 running bdist_wheel 2025-10-30T22:25:35,150 running build 2025-10-30T22:25:35,151 running build_py 2025-10-30T22:25:35,158 creating build/lib/edam_ontology 2025-10-30T22:25:35,159 copying edam_ontology/streams.py -> build/lib/edam_ontology 2025-10-30T22:25:35,161 copying edam_ontology/__init__.py -> build/lib/edam_ontology 2025-10-30T22:25:35,163 running egg_info 2025-10-30T22:25:35,174 writing edam_ontology.egg-info/PKG-INFO 2025-10-30T22:25:35,177 writing dependency_links to edam_ontology.egg-info/dependency_links.txt 2025-10-30T22:25:35,178 writing top-level names to edam_ontology.egg-info/top_level.txt 2025-10-30T22:25:35,187 reading manifest file 'edam_ontology.egg-info/SOURCES.txt' 2025-10-30T22:25:35,189 reading manifest template 'MANIFEST.in' 2025-10-30T22:25:35,192 adding license file 'LICENSE' 2025-10-30T22:25:35,195 writing manifest file 'edam_ontology.egg-info/SOURCES.txt' 2025-10-30T22:25:35,197 copying edam_ontology/EDAM.tsv -> build/lib/edam_ontology 2025-10-30T22:25:35,237 installing to build/bdist.linux-armv7l/wheel 2025-10-30T22:25:35,238 running install 2025-10-30T22:25:35,261 running install_lib 2025-10-30T22:25:35,267 creating build/bdist.linux-armv7l/wheel 2025-10-30T22:25:35,269 creating build/bdist.linux-armv7l/wheel/edam_ontology 2025-10-30T22:25:35,270 copying build/lib/edam_ontology/EDAM.tsv -> build/bdist.linux-armv7l/wheel/./edam_ontology 2025-10-30T22:25:35,302 copying build/lib/edam_ontology/streams.py -> build/bdist.linux-armv7l/wheel/./edam_ontology 2025-10-30T22:25:35,304 copying build/lib/edam_ontology/__init__.py -> build/bdist.linux-armv7l/wheel/./edam_ontology 2025-10-30T22:25:35,305 running install_egg_info 2025-10-30T22:25:35,311 Copying edam_ontology.egg-info to build/bdist.linux-armv7l/wheel/./edam_ontology-1.25.3-py3.11.egg-info 2025-10-30T22:25:35,319 running install_scripts 2025-10-30T22:25:35,328 creating build/bdist.linux-armv7l/wheel/edam_ontology-1.25.3.dist-info/WHEEL 2025-10-30T22:25:35,330 creating '/tmp/pip-wheel-mhf1wbgf/.tmp-wyrkf4cz/edam_ontology-1.25.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-10-30T22:25:35,466 adding 'edam_ontology/EDAM.tsv' 2025-10-30T22:25:35,480 adding 'edam_ontology/__init__.py' 2025-10-30T22:25:35,481 adding 'edam_ontology/streams.py' 2025-10-30T22:25:35,484 adding 'edam_ontology-1.25.3.dist-info/licenses/LICENSE' 2025-10-30T22:25:35,485 adding 'edam_ontology-1.25.3.dist-info/METADATA' 2025-10-30T22:25:35,486 adding 'edam_ontology-1.25.3.dist-info/WHEEL' 2025-10-30T22:25:35,487 adding 'edam_ontology-1.25.3.dist-info/top_level.txt' 2025-10-30T22:25:35,488 adding 'edam_ontology-1.25.3.dist-info/RECORD' 2025-10-30T22:25:35,492 removing build/bdist.linux-armv7l/wheel 2025-10-30T22:25:35,594 Building wheel for edam-ontology (pyproject.toml): finished with status 'done' 2025-10-30T22:25:35,605 Created wheel for edam-ontology: filename=edam_ontology-1.25.3-py3-none-any.whl size=261922 sha256=5210a85baccc22edb6dec32dff563ad986e0a016b348321a7e1cc187c7b469ba 2025-10-30T22:25:35,606 Stored in directory: /tmp/pip-ephem-wheel-cache-rncqi8ud/wheels/e2/4f/84/8315197576a06286a11f9e6b0d5855d4bd32e677fe1b654316 2025-10-30T22:25:35,616 Successfully built edam-ontology 2025-10-30T22:25:35,628 Removed build tracker: '/tmp/pip-build-tracker-s5vfxb_z'