2025-11-07T16:07:17,532 Created temporary directory: /tmp/pip-ephem-wheel-cache-a_83jbzz 2025-11-07T16:07:17,534 Created temporary directory: /tmp/pip-build-tracker-ote3hiaj 2025-11-07T16:07:17,535 Initialized build tracking at /tmp/pip-build-tracker-ote3hiaj 2025-11-07T16:07:17,535 Created build tracker: /tmp/pip-build-tracker-ote3hiaj 2025-11-07T16:07:17,536 Entered build tracker: /tmp/pip-build-tracker-ote3hiaj 2025-11-07T16:07:17,536 Created temporary directory: /tmp/pip-wheel-mscpclfr 2025-11-07T16:07:17,540 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-07T16:07:17,542 Created temporary directory: /tmp/pip-ephem-wheel-cache-4ug8xgui 2025-11-07T16:07:17,564 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-07T16:07:17,567 2 location(s) to search for versions of skimgpt: 2025-11-07T16:07:17,567 * https://pypi.org/simple/skimgpt/ 2025-11-07T16:07:17,567 * https://www.piwheels.org/simple/skimgpt/ 2025-11-07T16:07:17,568 Fetching project page and analyzing links: https://pypi.org/simple/skimgpt/ 2025-11-07T16:07:17,569 Getting page https://pypi.org/simple/skimgpt/ 2025-11-07T16:07:17,570 Found index url https://pypi.org/simple 2025-11-07T16:07:17,783 Fetched page https://pypi.org/simple/skimgpt/ as application/vnd.pypi.simple.v1+json 2025-11-07T16:07:17,785 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/5b/e4/159fa6d31e797670c16a966f329e887553320fd41121ecbc37f1f42a927b/skimgpt-1.0.0-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2025-11-07T16:07:17,787 Found link https://files.pythonhosted.org/packages/4d/9e/f1e24804429e7da0e9280b116b97ba5810a130b52dd9ccecceadd6ccf55e/skimgpt-1.0.0.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.0 2025-11-07T16:07:17,787 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/7c/53/cc52c8549904b6c89d007f1068a31346c3e75f09cbbc90a8189e4f60f874/skimgpt-1.0.5-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2025-11-07T16:07:17,788 Found link https://files.pythonhosted.org/packages/38/40/2a659285343186f5bb160e4163f8f4e5b10687be47c4546ad4a8d3c6c16e/skimgpt-1.0.5.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.5 2025-11-07T16:07:17,789 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/ab/06/547b283132634bdd63656d313a025913d71ee5b1d612f3bfcc2d98331b99/skimgpt-1.0.6-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2025-11-07T16:07:17,790 Found link https://files.pythonhosted.org/packages/e4/49/56dc12f28a9a69bec4368adfa335368866c377cf787db7cff12019293df8/skimgpt-1.0.6.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.0.6 2025-11-07T16:07:17,791 Skipping link: No binaries permitted for skimgpt: https://files.pythonhosted.org/packages/36/a3/b40a6e16d6d7e25fcf2945fbc1c4d449933135d27a10f649b276f62ab304/skimgpt-1.1-py3-none-any.whl (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10) 2025-11-07T16:07:17,792 Found link https://files.pythonhosted.org/packages/85/01/d401992a768ff3495f5e69595ef2fe1fd7f8c7dc5c3c433237cdafd0769e/skimgpt-1.1.tar.gz (from https://pypi.org/simple/skimgpt/) (requires-python:>=3.10), version: 1.1 2025-11-07T16:07:17,793 Fetching project page and analyzing links: https://www.piwheels.org/simple/skimgpt/ 2025-11-07T16:07:17,793 Getting page https://www.piwheels.org/simple/skimgpt/ 2025-11-07T16:07:17,795 Found index url https://www.piwheels.org/simple 2025-11-07T16:07:17,955 Fetched page https://www.piwheels.org/simple/skimgpt/ as text/html 2025-11-07T16:07:17,957 Skipping link: No binaries permitted for skimgpt: https://www.piwheels.org/simple/skimgpt/skimgpt-1.0.6-py3-none-any.whl#sha256=a974ad27fdafa96f8e13df016211ba558c585668756dc22dc6bab39e6ad87f5c (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2025-11-07T16:07:17,958 Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.5-py3-none-any.whl#sha256=4e4532d70e84030ef8e4886eadc21b1bec5f8478e56e5178ffe3e4b10d0e5872 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2025-11-07T16:07:17,959 Skipping link: No binaries permitted for skimgpt: https://archive1.piwheels.org/simple/skimgpt/skimgpt-1.0.0-py3-none-any.whl#sha256=4d72bc94b7b7efab9758f02986de73ee8e6624597343dba106c538245c978553 (from https://www.piwheels.org/simple/skimgpt/) (requires-python:>=3.10) 2025-11-07T16:07:17,959 Skipping link: not a file: https://www.piwheels.org/simple/skimgpt/ 2025-11-07T16:07:17,960 Skipping link: not a file: https://pypi.org/simple/skimgpt/ 2025-11-07T16:07:17,979 Given no hashes to check 1 links for project 'skimgpt': discarding no candidates 2025-11-07T16:07:17,997 Collecting skimgpt==1.1 2025-11-07T16:07:17,999 Created temporary directory: /tmp/pip-unpack-ak32858g 2025-11-07T16:07:18,212 Downloading skimgpt-1.1.tar.gz (127 kB) 2025-11-07T16:07:18,368 Added skimgpt==1.1 from https://files.pythonhosted.org/packages/85/01/d401992a768ff3495f5e69595ef2fe1fd7f8c7dc5c3c433237cdafd0769e/skimgpt-1.1.tar.gz to build tracker '/tmp/pip-build-tracker-ote3hiaj' 2025-11-07T16:07:18,376 Created temporary directory: /tmp/pip-build-env-0bk5pg6q 2025-11-07T16:07:18,380 Installing build dependencies: started 2025-11-07T16:07:18,382 Running command pip subprocess to install build dependencies 2025-11-07T16:07:19,555 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-07T16:07:20,172 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-07T16:07:20,195 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-07T16:07:21,946 Collecting setuptools>=45 2025-11-07T16:07:22,064 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-07T16:07:22,332 Collecting wheel 2025-11-07T16:07:22,351 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-11-07T16:07:22,682 Collecting setuptools_scm[toml]>=6.2 2025-11-07T16:07:22,702 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-11-07T16:07:22,916 Collecting packaging>=20 2025-11-07T16:07:22,931 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-11-07T16:07:25,858 Installing collected packages: wheel, setuptools, packaging, setuptools_scm 2025-11-07T16:07:26,115 Creating /tmp/pip-build-env-0bk5pg6q/overlay/local/bin 2025-11-07T16:07:26,117 changing mode of /tmp/pip-build-env-0bk5pg6q/overlay/local/bin/wheel to 755 2025-11-07T16:07:30,276 changing mode of /tmp/pip-build-env-0bk5pg6q/overlay/local/bin/setuptools-scm to 755 2025-11-07T16:07:30,305 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 wheel-0.45.1 2025-11-07T16:07:30,593 Installing build dependencies: finished with status 'done' 2025-11-07T16:07:30,599 Getting requirements to build wheel: started 2025-11-07T16:07:30,601 Running command Getting requirements to build wheel 2025-11-07T16:07:31,216 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-11-07T16:07:31,263 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-07T16:07:31,263 !! 2025-11-07T16:07:31,265 ******************************************************************************** 2025-11-07T16:07:31,265 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-07T16:07:31,266 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-07T16:07:31,267 or your builds will no longer be supported. 2025-11-07T16:07:31,268 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:31,268 ******************************************************************************** 2025-11-07T16:07:31,269 !! 2025-11-07T16:07:31,270 corresp(dist, value, root_dir) 2025-11-07T16:07:31,359 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-07T16:07:31,359 !! 2025-11-07T16:07:31,360 ******************************************************************************** 2025-11-07T16:07:31,361 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-07T16:07:31,362 License :: OSI Approved :: MIT License 2025-11-07T16:07:31,363 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:31,363 ******************************************************************************** 2025-11-07T16:07:31,364 !! 2025-11-07T16:07:31,365 dist._finalize_license_expression() 2025-11-07T16:07:31,365 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-07T16:07:31,366 !! 2025-11-07T16:07:31,367 ******************************************************************************** 2025-11-07T16:07:31,368 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-07T16:07:31,369 License :: OSI Approved :: MIT License 2025-11-07T16:07:31,370 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:31,371 ******************************************************************************** 2025-11-07T16:07:31,372 !! 2025-11-07T16:07:31,373 self._finalize_license_expression() 2025-11-07T16:07:31,374 running egg_info 2025-11-07T16:07:31,382 writing skimgpt.egg-info/PKG-INFO 2025-11-07T16:07:31,389 writing dependency_links to skimgpt.egg-info/dependency_links.txt 2025-11-07T16:07:31,391 writing entry points to skimgpt.egg-info/entry_points.txt 2025-11-07T16:07:31,395 writing requirements to skimgpt.egg-info/requires.txt 2025-11-07T16:07:31,396 writing top-level names to skimgpt.egg-info/top_level.txt 2025-11-07T16:07:31,448 listing git files failed - pretending there aren't any 2025-11-07T16:07:31,456 reading manifest file 'skimgpt.egg-info/SOURCES.txt' 2025-11-07T16:07:31,460 reading manifest template 'MANIFEST.in' 2025-11-07T16:07:31,461 warning: no files found matching 'run_multiple_analyses.sh' 2025-11-07T16:07:31,474 warning: no previously-included files found matching 'test/*' 2025-11-07T16:07:31,475 warning: no previously-included files found matching '.git*' 2025-11-07T16:07:31,476 warning: no previously-included files found matching '.pytest_cache' 2025-11-07T16:07:31,476 warning: no previously-included files found matching '__pycache__' 2025-11-07T16:07:31,477 warning: no previously-included files found matching '*.pyc' 2025-11-07T16:07:31,478 warning: no previously-included files found matching '.ipynb_checkpoints' 2025-11-07T16:07:31,482 writing manifest file 'skimgpt.egg-info/SOURCES.txt' 2025-11-07T16:07:31,584 Getting requirements to build wheel: finished with status 'done' 2025-11-07T16:07:31,588 Created temporary directory: /tmp/pip-modern-metadata-p8m3z7g1 2025-11-07T16:07:31,590 Preparing metadata (pyproject.toml): started 2025-11-07T16:07:31,591 Running command Preparing metadata (pyproject.toml) 2025-11-07T16:07:32,182 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-11-07T16:07:32,220 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-07T16:07:32,220 !! 2025-11-07T16:07:32,221 ******************************************************************************** 2025-11-07T16:07:32,222 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-07T16:07:32,223 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-07T16:07:32,224 or your builds will no longer be supported. 2025-11-07T16:07:32,225 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:32,225 ******************************************************************************** 2025-11-07T16:07:32,227 !! 2025-11-07T16:07:32,227 corresp(dist, value, root_dir) 2025-11-07T16:07:32,309 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-07T16:07:32,310 !! 2025-11-07T16:07:32,311 ******************************************************************************** 2025-11-07T16:07:32,312 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-07T16:07:32,313 License :: OSI Approved :: MIT License 2025-11-07T16:07:32,314 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:32,315 ******************************************************************************** 2025-11-07T16:07:32,316 !! 2025-11-07T16:07:32,317 dist._finalize_license_expression() 2025-11-07T16:07:32,317 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-07T16:07:32,318 !! 2025-11-07T16:07:32,319 ******************************************************************************** 2025-11-07T16:07:32,320 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-07T16:07:32,321 License :: OSI Approved :: MIT License 2025-11-07T16:07:32,322 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:32,322 ******************************************************************************** 2025-11-07T16:07:32,323 !! 2025-11-07T16:07:32,324 self._finalize_license_expression() 2025-11-07T16:07:32,324 running dist_info 2025-11-07T16:07:32,338 creating /tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info 2025-11-07T16:07:32,339 writing /tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/PKG-INFO 2025-11-07T16:07:32,345 writing dependency_links to /tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/dependency_links.txt 2025-11-07T16:07:32,347 writing entry points to /tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/entry_points.txt 2025-11-07T16:07:32,350 writing requirements to /tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/requires.txt 2025-11-07T16:07:32,352 writing top-level names to /tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/top_level.txt 2025-11-07T16:07:32,353 writing manifest file '/tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/SOURCES.txt' 2025-11-07T16:07:32,400 listing git files failed - pretending there aren't any 2025-11-07T16:07:32,407 reading manifest file '/tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/SOURCES.txt' 2025-11-07T16:07:32,409 reading manifest template 'MANIFEST.in' 2025-11-07T16:07:32,411 warning: no files found matching 'run_multiple_analyses.sh' 2025-11-07T16:07:32,422 warning: no previously-included files found matching 'test/*' 2025-11-07T16:07:32,422 warning: no previously-included files found matching '.git*' 2025-11-07T16:07:32,423 warning: no previously-included files found matching '.pytest_cache' 2025-11-07T16:07:32,423 warning: no previously-included files found matching '__pycache__' 2025-11-07T16:07:32,424 warning: no previously-included files found matching '*.pyc' 2025-11-07T16:07:32,424 warning: no previously-included files found matching '.ipynb_checkpoints' 2025-11-07T16:07:32,428 writing manifest file '/tmp/pip-modern-metadata-p8m3z7g1/skimgpt.egg-info/SOURCES.txt' 2025-11-07T16:07:32,429 creating '/tmp/pip-modern-metadata-p8m3z7g1/skimgpt-1.1.dist-info' 2025-11-07T16:07:32,558 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-07T16:07:32,563 Source in /tmp/pip-wheel-mscpclfr/skimgpt_75293899adf3439b9811ba7a4c7a8307 has version 1.1, which satisfies requirement skimgpt==1.1 from https://files.pythonhosted.org/packages/85/01/d401992a768ff3495f5e69595ef2fe1fd7f8c7dc5c3c433237cdafd0769e/skimgpt-1.1.tar.gz 2025-11-07T16:07:32,564 Removed skimgpt==1.1 from https://files.pythonhosted.org/packages/85/01/d401992a768ff3495f5e69595ef2fe1fd7f8c7dc5c3c433237cdafd0769e/skimgpt-1.1.tar.gz from build tracker '/tmp/pip-build-tracker-ote3hiaj' 2025-11-07T16:07:32,570 Created temporary directory: /tmp/pip-unpack-pg73zlij 2025-11-07T16:07:32,571 Building wheels for collected packages: skimgpt 2025-11-07T16:07:32,575 Created temporary directory: /tmp/pip-wheel-f7x4kx4d 2025-11-07T16:07:32,576 Destination directory: /tmp/pip-wheel-f7x4kx4d 2025-11-07T16:07:32,578 Building wheel for skimgpt (pyproject.toml): started 2025-11-07T16:07:32,579 Running command Building wheel for skimgpt (pyproject.toml) 2025-11-07T16:07:33,149 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-11-07T16:07:33,185 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-07T16:07:33,186 !! 2025-11-07T16:07:33,187 ******************************************************************************** 2025-11-07T16:07:33,188 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-07T16:07:33,189 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-07T16:07:33,190 or your builds will no longer be supported. 2025-11-07T16:07:33,191 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:33,191 ******************************************************************************** 2025-11-07T16:07:33,193 !! 2025-11-07T16:07:33,193 corresp(dist, value, root_dir) 2025-11-07T16:07:33,270 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-07T16:07:33,271 !! 2025-11-07T16:07:33,272 ******************************************************************************** 2025-11-07T16:07:33,273 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-07T16:07:33,274 License :: OSI Approved :: MIT License 2025-11-07T16:07:33,275 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:33,276 ******************************************************************************** 2025-11-07T16:07:33,277 !! 2025-11-07T16:07:33,278 dist._finalize_license_expression() 2025-11-07T16:07:33,278 /tmp/pip-build-env-0bk5pg6q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-07T16:07:33,279 !! 2025-11-07T16:07:33,280 ******************************************************************************** 2025-11-07T16:07:33,280 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-07T16:07:33,281 License :: OSI Approved :: MIT License 2025-11-07T16:07:33,282 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-07T16:07:33,282 ******************************************************************************** 2025-11-07T16:07:33,283 !! 2025-11-07T16:07:33,284 self._finalize_license_expression() 2025-11-07T16:07:33,284 running bdist_wheel 2025-11-07T16:07:33,305 running build 2025-11-07T16:07:33,306 running build_py 2025-11-07T16:07:33,314 creating build/lib/src 2025-11-07T16:07:33,316 copying src/relevance.py -> build/lib/src 2025-11-07T16:07:33,319 copying src/scoring_guidelines.py -> build/lib/src 2025-11-07T16:07:33,322 copying src/utils.py -> build/lib/src 2025-11-07T16:07:33,325 copying src/__init__.py -> build/lib/src 2025-11-07T16:07:33,327 copying src/eval_JSON_results.py -> build/lib/src 2025-11-07T16:07:33,329 copying src/classifier.py -> build/lib/src 2025-11-07T16:07:33,332 copying src/jobs.py -> build/lib/src 2025-11-07T16:07:33,334 copying src/pubmed_fetcher.py -> build/lib/src 2025-11-07T16:07:33,337 copying src/cost_estimator.py -> build/lib/src 2025-11-07T16:07:33,339 copying src/htcondor_helper.py -> build/lib/src 2025-11-07T16:07:33,342 copying src/prompt_library.py -> build/lib/src 2025-11-07T16:07:33,345 copying src/skim_and_km_api.py -> build/lib/src 2025-11-07T16:07:33,347 running egg_info 2025-11-07T16:07:33,362 writing skimgpt.egg-info/PKG-INFO 2025-11-07T16:07:33,368 writing dependency_links to skimgpt.egg-info/dependency_links.txt 2025-11-07T16:07:33,370 writing entry points to skimgpt.egg-info/entry_points.txt 2025-11-07T16:07:33,373 writing requirements to skimgpt.egg-info/requires.txt 2025-11-07T16:07:33,374 writing top-level names to skimgpt.egg-info/top_level.txt 2025-11-07T16:07:33,410 listing git files failed - pretending there aren't any 2025-11-07T16:07:33,416 reading manifest file 'skimgpt.egg-info/SOURCES.txt' 2025-11-07T16:07:33,420 reading manifest template 'MANIFEST.in' 2025-11-07T16:07:33,421 warning: no files found matching 'run_multiple_analyses.sh' 2025-11-07T16:07:33,434 warning: no previously-included files found matching 'test/*' 2025-11-07T16:07:33,435 warning: no previously-included files found matching '.git*' 2025-11-07T16:07:33,435 warning: no previously-included files found matching '.pytest_cache' 2025-11-07T16:07:33,436 warning: no previously-included files found matching '__pycache__' 2025-11-07T16:07:33,437 warning: no previously-included files found matching '*.pyc' 2025-11-07T16:07:33,437 warning: no previously-included files found matching '.ipynb_checkpoints' 2025-11-07T16:07:33,441 writing manifest file 'skimgpt.egg-info/SOURCES.txt' 2025-11-07T16:07:33,445 copying src/run.sh -> build/lib/src 2025-11-07T16:07:33,466 installing to build/bdist.linux-armv7l/wheel 2025-11-07T16:07:33,467 running install 2025-11-07T16:07:33,490 running install_lib 2025-11-07T16:07:33,498 creating build/bdist.linux-armv7l/wheel 2025-11-07T16:07:33,500 creating build/bdist.linux-armv7l/wheel/src 2025-11-07T16:07:33,501 copying build/lib/src/relevance.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,505 copying build/lib/src/scoring_guidelines.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,508 copying build/lib/src/utils.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,511 copying build/lib/src/__init__.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,513 copying build/lib/src/eval_JSON_results.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,515 copying build/lib/src/run.sh -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,517 copying build/lib/src/classifier.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,520 copying build/lib/src/jobs.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,522 copying build/lib/src/pubmed_fetcher.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,525 copying build/lib/src/cost_estimator.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,527 copying build/lib/src/htcondor_helper.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,530 copying build/lib/src/prompt_library.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,533 copying build/lib/src/skim_and_km_api.py -> build/bdist.linux-armv7l/wheel/./src 2025-11-07T16:07:33,536 running install_egg_info 2025-11-07T16:07:33,543 Copying skimgpt.egg-info to build/bdist.linux-armv7l/wheel/./skimgpt-1.1-py3.11.egg-info 2025-11-07T16:07:33,556 running install_scripts 2025-11-07T16:07:33,568 creating build/bdist.linux-armv7l/wheel/skimgpt-1.1.dist-info/WHEEL 2025-11-07T16:07:33,571 creating '/tmp/pip-wheel-f7x4kx4d/.tmp-4c3138bj/skimgpt-1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-07T16:07:33,574 adding 'src/__init__.py' 2025-11-07T16:07:33,577 adding 'src/classifier.py' 2025-11-07T16:07:33,579 adding 'src/cost_estimator.py' 2025-11-07T16:07:33,581 adding 'src/eval_JSON_results.py' 2025-11-07T16:07:33,583 adding 'src/htcondor_helper.py' 2025-11-07T16:07:33,585 adding 'src/jobs.py' 2025-11-07T16:07:33,587 adding 'src/prompt_library.py' 2025-11-07T16:07:33,590 adding 'src/pubmed_fetcher.py' 2025-11-07T16:07:33,594 adding 'src/relevance.py' 2025-11-07T16:07:33,595 adding 'src/run.sh' 2025-11-07T16:07:33,599 adding 'src/scoring_guidelines.py' 2025-11-07T16:07:33,601 adding 'src/skim_and_km_api.py' 2025-11-07T16:07:33,605 adding 'src/utils.py' 2025-11-07T16:07:33,606 adding 'skimgpt-1.1.dist-info/METADATA' 2025-11-07T16:07:33,608 adding 'skimgpt-1.1.dist-info/WHEEL' 2025-11-07T16:07:33,609 adding 'skimgpt-1.1.dist-info/entry_points.txt' 2025-11-07T16:07:33,610 adding 'skimgpt-1.1.dist-info/top_level.txt' 2025-11-07T16:07:33,610 adding 'skimgpt-1.1.dist-info/RECORD' 2025-11-07T16:07:33,612 removing build/bdist.linux-armv7l/wheel 2025-11-07T16:07:33,720 Building wheel for skimgpt (pyproject.toml): finished with status 'done' 2025-11-07T16:07:33,726 Created wheel for skimgpt: filename=skimgpt-1.1-py3-none-any.whl size=57053 sha256=480c4ea401f7b080c2c4f06dbde341d6c4dba2629b04b574e64e4fe18979326b 2025-11-07T16:07:33,728 Stored in directory: /tmp/pip-ephem-wheel-cache-4ug8xgui/wheels/25/4a/f5/7ffdc3708a9abd0b83dadd8fb40d7a80b21d50c3f5a260f790 2025-11-07T16:07:33,740 Successfully built skimgpt 2025-11-07T16:07:33,745 Removed build tracker: '/tmp/pip-build-tracker-ote3hiaj'