2025-11-13T18:20:22,454 Created temporary directory: /tmp/pip-ephem-wheel-cache-82go20st 2025-11-13T18:20:22,456 Created temporary directory: /tmp/pip-build-tracker-56tkmpce 2025-11-13T18:20:22,456 Initialized build tracking at /tmp/pip-build-tracker-56tkmpce 2025-11-13T18:20:22,457 Created build tracker: /tmp/pip-build-tracker-56tkmpce 2025-11-13T18:20:22,457 Entered build tracker: /tmp/pip-build-tracker-56tkmpce 2025-11-13T18:20:22,458 Created temporary directory: /tmp/pip-wheel-52fit3yi 2025-11-13T18:20:22,461 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-13T18:20:22,463 Created temporary directory: /tmp/pip-ephem-wheel-cache-d96fyz4x 2025-11-13T18:20:22,484 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-13T18:20:22,487 2 location(s) to search for versions of phetk: 2025-11-13T18:20:22,487 * https://pypi.org/simple/phetk/ 2025-11-13T18:20:22,487 * https://www.piwheels.org/simple/phetk/ 2025-11-13T18:20:22,488 Fetching project page and analyzing links: https://pypi.org/simple/phetk/ 2025-11-13T18:20:22,489 Getting page https://pypi.org/simple/phetk/ 2025-11-13T18:20:22,490 Found index url https://pypi.org/simple 2025-11-13T18:20:22,703 Fetched page https://pypi.org/simple/phetk/ as application/vnd.pypi.simple.v1+json 2025-11-13T18:20:22,712 Skipping link: No binaries permitted for phetk: https://files.pythonhosted.org/packages/ab/85/d4de239d09280be65ca0a64eedb48d66031464b5b9f2aa9b6c565fffbb20/PheTK-0.1.27-py3-none-any.whl 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2025-11-13T18:20:22,723 Skipping link: No binaries permitted for phetk: https://files.pythonhosted.org/packages/53/c4/3269c86d4e0d84975923925f984dc5d2a1c757311b135af32ba09a8d3996/PheTK-0.1.33-py3-none-any.whl (from https://pypi.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,724 Found link https://files.pythonhosted.org/packages/f3/3c/b6230e0def4172ce4a86092a09bb111876afeba98cdaae9dc14aa348119e/PheTK-0.1.33.tar.gz (from https://pypi.org/simple/phetk/) (requires-python:>=3.7), version: 0.1.33 2025-11-13T18:20:22,724 Skipping link: No binaries permitted for phetk: https://files.pythonhosted.org/packages/7a/1c/e7b46a1fe11cdfef25e7de5cd2d3308a08b12a174798e546e47133688183/PheTK-0.1.34-py3-none-any.whl (from https://pypi.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,725 Found link https://files.pythonhosted.org/packages/c5/7e/19d6d3ca262516d0ef9d96461bfaff75db4346cc14f5debf365af884bf78/PheTK-0.1.34.tar.gz (from https://pypi.org/simple/phetk/) 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2025-11-13T18:20:22,737 Found link https://files.pythonhosted.org/packages/57/c5/2911fa57da474f128efb0e553ec8f49def3d28f22b2fadceee9c515cd99f/PheTK-0.1.42.tar.gz (from https://pypi.org/simple/phetk/) (requires-python:>=3.7), version: 0.1.42 2025-11-13T18:20:22,738 Skipping link: No binaries permitted for phetk: https://files.pythonhosted.org/packages/2a/21/46cd74d4ca2c0cf8c1f59e223fabf658c2ab1bd1de135dd7a8d21432b7c3/PheTK-0.1.43-py3-none-any.whl (from https://pypi.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,739 Found link https://files.pythonhosted.org/packages/23/9c/c2790506de929245d9db093b42ea00d3cda05ddeb6d8d4d8b251d5f5c5d0/PheTK-0.1.43.tar.gz (from https://pypi.org/simple/phetk/) (requires-python:>=3.7), version: 0.1.43 2025-11-13T18:20:22,739 Skipping link: No binaries permitted for phetk: https://files.pythonhosted.org/packages/0b/1b/76ec2cfcf3fc2409220630ebf349088bedceaf9d4a0b629d2bdb55ca9fcd/PheTK-0.1.44-py3-none-any.whl (from https://pypi.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,740 Found link https://files.pythonhosted.org/packages/00/c6/888f0a1c55651ff52ca1b449516bf00f9efbb63b4a56d00a5a2a1bf3aa72/PheTK-0.1.44.tar.gz (from https://pypi.org/simple/phetk/) (requires-python:>=3.7), version: 0.1.44 2025-11-13T18:20:22,741 Skipping link: No binaries permitted for phetk: https://files.pythonhosted.org/packages/83/d0/418079f952d5a6bf35d1785c83b8797c1e42cdd29c80f9b38449c67f969c/PheTK-0.1.45-py3-none-any.whl (from https://pypi.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,742 Found link https://files.pythonhosted.org/packages/3c/21/f60adc9b4521e04366cebdd5e96cf1c86ea025588d30e70b4111b8518604/PheTK-0.1.45.tar.gz (from https://pypi.org/simple/phetk/) (requires-python:>=3.7), version: 0.1.45 2025-11-13T18:20:22,743 Skipping link: No binaries permitted for phetk: https://files.pythonhosted.org/packages/52/b5/62d36c57219a274f927d72f8c720123a4fa61127b99eb4045bce4b514fa5/PheTK-0.1.46-py3-none-any.whl (from 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https://pypi.org/simple/phetk/) (requires-python:>=3.7), version: 0.2.1 2025-11-13T18:20:22,748 Found link https://files.pythonhosted.org/packages/02/6a/40d9eb3d6c6136014a1ad30e809947b5e4e39ab51a665a4c548cbef0e293/phetk-0.2.2.tar.gz (from https://pypi.org/simple/phetk/) (requires-python:>=3.7), version: 0.2.2 2025-11-13T18:20:22,748 Fetching project page and analyzing links: https://www.piwheels.org/simple/phetk/ 2025-11-13T18:20:22,749 Getting page https://www.piwheels.org/simple/phetk/ 2025-11-13T18:20:22,750 Found index url https://www.piwheels.org/simple 2025-11-13T18:20:22,907 Fetched page https://www.piwheels.org/simple/phetk/ as text/html 2025-11-13T18:20:22,913 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.47-py3-none-any.whl#sha256=1ce209871a5ed3a9d02b8e7f493eb9e8bcd7c02ca109cddeed8ae1d84ff1cd93 (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,914 Skipping link: No binaries 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https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,921 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.33-py3-none-any.whl#sha256=4f76d7c95bbf375d35329ca4117b815dfdb80ca05c8ad8f3dc7ca9729eb8b6d2 (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,922 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.32-py3-none-any.whl#sha256=8bdad41b33ad4d0067f41f02f1398c6810e189cc14a3356a45376fa04b4843ee (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,922 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.31-py3-none-any.whl#sha256=88c1fbf676ff80d74532bc265994674a3c1ca034aceb8685fa69626cba8a7e93 (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,923 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.30-py3-none-any.whl#sha256=8bd889446f0e99f1610fddd4d3fdad088ff415a864123b27eefe7985f9a6f8fb (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,923 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.29-py3-none-any.whl#sha256=01aeb58b6e2da368220f87030b17cf07a21975f0037ac87be278ead8a651ba47 (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,924 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.28-py3-none-any.whl#sha256=9226c66ad1e294b3d00fca24d16a5f435e19ae66dfb4d49ace90c9ae53564301 (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,924 Skipping link: No binaries permitted for phetk: https://archive1.piwheels.org/simple/phetk/PheTK-0.1.27-py3-none-any.whl#sha256=eaa31c02c286da1f33e9ff47dd574577822cc06d3b413cdfbe1e734f121ac0e0 (from https://www.piwheels.org/simple/phetk/) (requires-python:>=3.7) 2025-11-13T18:20:22,925 Skipping link: not a file: https://www.piwheels.org/simple/phetk/ 2025-11-13T18:20:22,926 Skipping link: not a file: https://pypi.org/simple/phetk/ 2025-11-13T18:20:22,947 Given no hashes to check 1 links for project 'phetk': discarding no candidates 2025-11-13T18:20:22,965 Collecting phetk==0.2.1 2025-11-13T18:20:22,968 Created temporary directory: /tmp/pip-unpack-6guebijp 2025-11-13T18:20:23,193 Downloading phetk-0.2.1.tar.gz (1.3 MB) 2025-11-13T18:20:24,351 Added phetk==0.2.1 from https://files.pythonhosted.org/packages/aa/07/3576bb02b0aaf73b6701945d2ccfcad22f21c986498651422a944cc40d41/phetk-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-56tkmpce' 2025-11-13T18:20:24,352 Running setup.py (path:/tmp/pip-wheel-52fit3yi/phetk_c4a566521c584b039f9a602ec14e4f17/setup.py) egg_info for package phetk 2025-11-13T18:20:24,353 Created temporary directory: /tmp/pip-pip-egg-info-ydshkkbv 2025-11-13T18:20:24,354 Preparing metadata (setup.py): started 2025-11-13T18:20:24,355 Running command python setup.py egg_info 2025-11-13T18:20:25,236 running egg_info 2025-11-13T18:20:25,262 creating /tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info 2025-11-13T18:20:25,263 writing /tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/PKG-INFO 2025-11-13T18:20:25,267 writing dependency_links to /tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/dependency_links.txt 2025-11-13T18:20:25,269 writing entry points to /tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/entry_points.txt 2025-11-13T18:20:25,271 writing requirements to /tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/requires.txt 2025-11-13T18:20:25,271 writing top-level names to /tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/top_level.txt 2025-11-13T18:20:25,273 writing manifest file '/tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/SOURCES.txt' 2025-11-13T18:20:25,361 reading manifest file '/tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/SOURCES.txt' 2025-11-13T18:20:25,363 adding license file 'LICENSE' 2025-11-13T18:20:25,366 writing manifest file '/tmp/pip-pip-egg-info-ydshkkbv/phetk.egg-info/SOURCES.txt' 2025-11-13T18:20:25,470 Preparing metadata (setup.py): finished with status 'done' 2025-11-13T18:20:25,475 Source in /tmp/pip-wheel-52fit3yi/phetk_c4a566521c584b039f9a602ec14e4f17 has version 0.2.1, which satisfies requirement phetk==0.2.1 from https://files.pythonhosted.org/packages/aa/07/3576bb02b0aaf73b6701945d2ccfcad22f21c986498651422a944cc40d41/phetk-0.2.1.tar.gz 2025-11-13T18:20:25,476 Removed phetk==0.2.1 from https://files.pythonhosted.org/packages/aa/07/3576bb02b0aaf73b6701945d2ccfcad22f21c986498651422a944cc40d41/phetk-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-56tkmpce' 2025-11-13T18:20:25,482 Created temporary directory: /tmp/pip-unpack-0z_htd9s 2025-11-13T18:20:25,483 Building wheels for collected packages: phetk 2025-11-13T18:20:25,487 Created temporary directory: /tmp/pip-wheel-v89hpflu 2025-11-13T18:20:25,488 Building wheel for phetk (setup.py): started 2025-11-13T18:20:25,489 Destination directory: /tmp/pip-wheel-v89hpflu 2025-11-13T18:20:25,490 Running command python setup.py bdist_wheel 2025-11-13T18:20:26,321 running bdist_wheel 2025-11-13T18:20:26,452 running build 2025-11-13T18:20:26,452 running build_py 2025-11-13T18:20:26,483 creating build/lib/PheTK 2025-11-13T18:20:26,485 copying src/PheTK/_paths.py -> build/lib/PheTK 2025-11-13T18:20:26,487 copying src/PheTK/cohort.py -> build/lib/PheTK 2025-11-13T18:20:26,490 copying src/PheTK/plot.py -> build/lib/PheTK 2025-11-13T18:20:26,494 copying src/PheTK/_queries.py -> build/lib/PheTK 2025-11-13T18:20:26,496 copying src/PheTK/_utils.py -> build/lib/PheTK 2025-11-13T18:20:26,499 copying src/PheTK/phecode.py -> build/lib/PheTK 2025-11-13T18:20:26,501 copying src/PheTK/__main__.py -> build/lib/PheTK 2025-11-13T18:20:26,504 copying src/PheTK/_dsub.py -> build/lib/PheTK 2025-11-13T18:20:26,507 copying src/PheTK/__init__.py -> build/lib/PheTK 2025-11-13T18:20:26,508 copying src/PheTK/demo.py -> build/lib/PheTK 2025-11-13T18:20:26,511 copying src/PheTK/phewas.py -> build/lib/PheTK 2025-11-13T18:20:26,549 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-11-13T18:20:26,549 !! 2025-11-13T18:20:26,550 ******************************************************************************** 2025-11-13T18:20:26,551 Please avoid running ``setup.py`` directly. 2025-11-13T18:20:26,551 Instead, use pypa/build, pypa/installer or other 2025-11-13T18:20:26,552 standards-based tools. 2025-11-13T18:20:26,553 This deprecation is overdue, please update your project and remove deprecated 2025-11-13T18:20:26,554 calls to avoid build errors in the future. 2025-11-13T18:20:26,555 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-11-13T18:20:26,555 ******************************************************************************** 2025-11-13T18:20:26,556 !! 2025-11-13T18:20:26,557 self.initialize_options() 2025-11-13T18:20:26,578 installing to build/bdist.linux-armv7l/wheel 2025-11-13T18:20:26,579 running install 2025-11-13T18:20:26,604 running install_lib 2025-11-13T18:20:26,632 creating build/bdist.linux-armv7l/wheel 2025-11-13T18:20:26,634 creating build/bdist.linux-armv7l/wheel/PheTK 2025-11-13T18:20:26,636 copying build/lib/PheTK/_paths.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,637 copying build/lib/PheTK/cohort.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,640 copying build/lib/PheTK/plot.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,644 copying build/lib/PheTK/_queries.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,646 copying build/lib/PheTK/_utils.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,649 copying build/lib/PheTK/phecode.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,651 copying build/lib/PheTK/__main__.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,654 copying build/lib/PheTK/_dsub.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,656 copying build/lib/PheTK/__init__.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,658 copying build/lib/PheTK/demo.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,660 copying build/lib/PheTK/phewas.py -> build/bdist.linux-armv7l/wheel/./PheTK 2025-11-13T18:20:26,663 running install_egg_info 2025-11-13T18:20:26,699 running egg_info 2025-11-13T18:20:26,726 creating src/phetk.egg-info 2025-11-13T18:20:26,727 writing src/phetk.egg-info/PKG-INFO 2025-11-13T18:20:26,730 writing dependency_links to src/phetk.egg-info/dependency_links.txt 2025-11-13T18:20:26,732 writing entry points to src/phetk.egg-info/entry_points.txt 2025-11-13T18:20:26,734 writing requirements to src/phetk.egg-info/requires.txt 2025-11-13T18:20:26,734 writing top-level names to src/phetk.egg-info/top_level.txt 2025-11-13T18:20:26,736 writing manifest file 'src/phetk.egg-info/SOURCES.txt' 2025-11-13T18:20:26,765 reading manifest file 'src/phetk.egg-info/SOURCES.txt' 2025-11-13T18:20:26,767 adding license file 'LICENSE' 2025-11-13T18:20:26,770 writing manifest file 'src/phetk.egg-info/SOURCES.txt' 2025-11-13T18:20:26,771 Copying src/phetk.egg-info to build/bdist.linux-armv7l/wheel/./phetk-0.2.1-py3.11.egg-info 2025-11-13T18:20:26,783 running install_scripts 2025-11-13T18:20:26,795 creating build/bdist.linux-armv7l/wheel/phetk-0.2.1.dist-info/WHEEL 2025-11-13T18:20:26,798 creating '/tmp/pip-wheel-v89hpflu/phetk-0.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-13T18:20:26,800 adding 'PheTK/__init__.py' 2025-11-13T18:20:26,802 adding 'PheTK/__main__.py' 2025-11-13T18:20:26,806 adding 'PheTK/_dsub.py' 2025-11-13T18:20:26,807 adding 'PheTK/_paths.py' 2025-11-13T18:20:26,809 adding 'PheTK/_queries.py' 2025-11-13T18:20:26,811 adding 'PheTK/_utils.py' 2025-11-13T18:20:26,815 adding 'PheTK/cohort.py' 2025-11-13T18:20:26,817 adding 'PheTK/demo.py' 2025-11-13T18:20:26,819 adding 'PheTK/phecode.py' 2025-11-13T18:20:26,827 adding 'PheTK/phewas.py' 2025-11-13T18:20:26,835 adding 'PheTK/plot.py' 2025-11-13T18:20:26,842 adding 'phetk-0.2.1.dist-info/licenses/LICENSE' 2025-11-13T18:20:26,844 adding 'phetk-0.2.1.dist-info/METADATA' 2025-11-13T18:20:26,846 adding 'phetk-0.2.1.dist-info/WHEEL' 2025-11-13T18:20:26,846 adding 'phetk-0.2.1.dist-info/entry_points.txt' 2025-11-13T18:20:26,847 adding 'phetk-0.2.1.dist-info/top_level.txt' 2025-11-13T18:20:26,848 adding 'phetk-0.2.1.dist-info/RECORD' 2025-11-13T18:20:26,850 removing build/bdist.linux-armv7l/wheel 2025-11-13T18:20:26,963 Building wheel for phetk (setup.py): finished with status 'done' 2025-11-13T18:20:26,966 Created wheel for phetk: filename=phetk-0.2.1-py3-none-any.whl size=76794 sha256=6b29222c742acd65299eff23950a70520f074b39c374a0f7011cabc9e9d4d925 2025-11-13T18:20:26,967 Stored in directory: /tmp/pip-ephem-wheel-cache-d96fyz4x/wheels/38/e0/50/2d1c7174f3ca6c4c9a075c3c26a27875d8b50cdb7bef8ae658 2025-11-13T18:20:26,979 Successfully built phetk 2025-11-13T18:20:26,985 Removed build tracker: '/tmp/pip-build-tracker-56tkmpce'