2025-11-16T09:23:48,360 Created temporary directory: /tmp/pip-ephem-wheel-cache-6s1chg29
2025-11-16T09:23:48,362 Created temporary directory: /tmp/pip-build-tracker-ng6wt639
2025-11-16T09:23:48,363 Initialized build tracking at /tmp/pip-build-tracker-ng6wt639
2025-11-16T09:23:48,363 Created build tracker: /tmp/pip-build-tracker-ng6wt639
2025-11-16T09:23:48,364 Entered build tracker: /tmp/pip-build-tracker-ng6wt639
2025-11-16T09:23:48,364 Created temporary directory: /tmp/pip-wheel-zyt5oj2d
2025-11-16T09:23:48,367 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-16T09:23:48,370 Created temporary directory: /tmp/pip-ephem-wheel-cache-su3477vl
2025-11-16T09:23:48,392 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-16T09:23:48,395 2 location(s) to search for versions of boltzgen:
2025-11-16T09:23:48,395 * https://pypi.org/simple/boltzgen/
2025-11-16T09:23:48,395 * https://www.piwheels.org/simple/boltzgen/
2025-11-16T09:23:48,396 Fetching project page and analyzing links: https://pypi.org/simple/boltzgen/
2025-11-16T09:23:48,397 Getting page https://pypi.org/simple/boltzgen/
2025-11-16T09:23:48,398 Found index url https://pypi.org/simple
2025-11-16T09:23:48,610 Fetched page https://pypi.org/simple/boltzgen/ as application/vnd.pypi.simple.v1+json
2025-11-16T09:23:48,613   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/63/90/abce182b30c62f13029523927c04820cfa69e03635c4ab7f2ca01aa64fc8/boltzgen-0.1.0-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-11-16T09:23:48,614   Found link https://files.pythonhosted.org/packages/19/6d/3259f594bdc5688261f220b0280facea3a2e497e34609c1d358c40ff26df/boltzgen-0.1.0.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.0
2025-11-16T09:23:48,615   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/b9/e1/bea73eb825594a48e824a59ea2484c0748020a9713c5b2503d7cfe033c2b/boltzgen-0.1.1-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-11-16T09:23:48,616   Found link https://files.pythonhosted.org/packages/78/94/91e0892caf7d08ad1ee432f2d64d07f0bb4cc5fa53a010b2995db7a90dbf/boltzgen-0.1.1.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.1
2025-11-16T09:23:48,617   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/74/06/6834e94921b9a5c978a3b6014e20db1dc528e5b67d0dcad0f8f47836908c/boltzgen-0.1.2-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-11-16T09:23:48,618   Found link https://files.pythonhosted.org/packages/20/02/6579821c7da06745452f2ecb95605dce1b8de1658d1dd4be5c6c3b970208/boltzgen-0.1.2.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.2
2025-11-16T09:23:48,618   Skipping link: No binaries permitted for boltzgen: https://files.pythonhosted.org/packages/c0/a0/332273a340fe1736c69fb400c653794e3aa0f8ecc8dbe7b3b5eef1cd1511/boltzgen-0.1.3-py3-none-any.whl (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9)
2025-11-16T09:23:48,619   Found link https://files.pythonhosted.org/packages/d1/ff/ffc1886142c710039ef8c9ec9e9646efe78e79371d51375b76787023d925/boltzgen-0.1.3.tar.gz (from https://pypi.org/simple/boltzgen/) (requires-python:>=3.9), version: 0.1.3
2025-11-16T09:23:48,620 Fetching project page and analyzing links: https://www.piwheels.org/simple/boltzgen/
2025-11-16T09:23:48,621 Getting page https://www.piwheels.org/simple/boltzgen/
2025-11-16T09:23:48,622 Found index url https://www.piwheels.org/simple
2025-11-16T09:23:48,990 Fetched page https://www.piwheels.org/simple/boltzgen/ as text/html
2025-11-16T09:23:48,995   Skipping link: No binaries permitted for boltzgen: https://archive1.piwheels.org/simple/boltzgen/boltzgen-0.1.2-py3-none-any.whl#sha256=540dfba80316dc74e1622a369e825b5debdf02aa7cb197ebbb311186113017c4 (from https://www.piwheels.org/simple/boltzgen/) (requires-python:>=3.9)
2025-11-16T09:23:48,996   Skipping link: No binaries permitted for boltzgen: https://archive1.piwheels.org/simple/boltzgen/boltzgen-0.1.1-py3-none-any.whl#sha256=ba441ae54add47197ca07443c4bb7468bb6e30ae1e94224c21360afb80fd6215 (from https://www.piwheels.org/simple/boltzgen/) (requires-python:>=3.9)
2025-11-16T09:23:48,997   Skipping link: No binaries permitted for boltzgen: https://archive1.piwheels.org/simple/boltzgen/boltzgen-0.1.0-py3-none-any.whl#sha256=4c742030a0a07bb98c68ee543aad9b9d01c4a673e62ba78cab124ed43a91b644 (from https://www.piwheels.org/simple/boltzgen/) (requires-python:>=3.9)
2025-11-16T09:23:48,998 Skipping link: not a file: https://www.piwheels.org/simple/boltzgen/
2025-11-16T09:23:48,999 Skipping link: not a file: https://pypi.org/simple/boltzgen/
2025-11-16T09:23:49,042 Given no hashes to check 1 links for project 'boltzgen': discarding no candidates
2025-11-16T09:23:49,069 Collecting boltzgen==0.1.3
2025-11-16T09:23:49,072   Created temporary directory: /tmp/pip-unpack-klbfa57g
2025-11-16T09:23:49,302   Downloading boltzgen-0.1.3.tar.gz (296 kB)
2025-11-16T09:23:49,705   Added boltzgen==0.1.3 from https://files.pythonhosted.org/packages/d1/ff/ffc1886142c710039ef8c9ec9e9646efe78e79371d51375b76787023d925/boltzgen-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-ng6wt639'
2025-11-16T09:23:49,711   Created temporary directory: /tmp/pip-build-env-ywvqotqq
2025-11-16T09:23:49,715   Installing build dependencies: started
2025-11-16T09:23:49,716   Running command pip subprocess to install build dependencies
2025-11-16T09:23:50,876   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-11-16T09:23:51,488   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-16T09:23:51,510   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-16T09:23:53,247   Collecting setuptools>=61
2025-11-16T09:23:53,351     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-11-16T09:23:56,259   Installing collected packages: setuptools
2025-11-16T09:23:59,851   Successfully installed setuptools-80.9.0
2025-11-16T09:24:00,113   Installing build dependencies: finished with status 'done'
2025-11-16T09:24:00,119   Getting requirements to build wheel: started
2025-11-16T09:24:00,120   Running command Getting requirements to build wheel
2025-11-16T09:24:00,829   running egg_info
2025-11-16T09:24:00,835   writing src/boltzgen.egg-info/PKG-INFO
2025-11-16T09:24:00,842   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-11-16T09:24:00,844   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-11-16T09:24:00,848   writing requirements to src/boltzgen.egg-info/requires.txt
2025-11-16T09:24:00,849   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-11-16T09:24:00,907   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-11-16T09:24:00,916   adding license file 'LICENSE'
2025-11-16T09:24:00,924   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-11-16T09:24:01,019   Getting requirements to build wheel: finished with status 'done'
2025-11-16T09:24:01,023   Created temporary directory: /tmp/pip-modern-metadata-cke6ywe6
2025-11-16T09:24:01,026   Preparing metadata (pyproject.toml): started
2025-11-16T09:24:01,027   Running command Preparing metadata (pyproject.toml)
2025-11-16T09:24:01,709   running dist_info
2025-11-16T09:24:01,721   creating /tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info
2025-11-16T09:24:01,722   writing /tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/PKG-INFO
2025-11-16T09:24:01,729   writing dependency_links to /tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/dependency_links.txt
2025-11-16T09:24:01,731   writing entry points to /tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/entry_points.txt
2025-11-16T09:24:01,735   writing requirements to /tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/requires.txt
2025-11-16T09:24:01,736   writing top-level names to /tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/top_level.txt
2025-11-16T09:24:01,737   writing manifest file '/tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/SOURCES.txt'
2025-11-16T09:24:01,786   reading manifest file '/tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/SOURCES.txt'
2025-11-16T09:24:01,788   adding license file 'LICENSE'
2025-11-16T09:24:01,794   writing manifest file '/tmp/pip-modern-metadata-cke6ywe6/boltzgen.egg-info/SOURCES.txt'
2025-11-16T09:24:01,796   creating '/tmp/pip-modern-metadata-cke6ywe6/boltzgen-0.1.3.dist-info'
2025-11-16T09:24:01,918   Preparing metadata (pyproject.toml): finished with status 'done'
2025-11-16T09:24:01,922   Source in /tmp/pip-wheel-zyt5oj2d/boltzgen_ae2f7c228baa441c9557e4e49ee82aa9 has version 0.1.3, which satisfies requirement boltzgen==0.1.3 from https://files.pythonhosted.org/packages/d1/ff/ffc1886142c710039ef8c9ec9e9646efe78e79371d51375b76787023d925/boltzgen-0.1.3.tar.gz
2025-11-16T09:24:01,923   Removed boltzgen==0.1.3 from https://files.pythonhosted.org/packages/d1/ff/ffc1886142c710039ef8c9ec9e9646efe78e79371d51375b76787023d925/boltzgen-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-ng6wt639'
2025-11-16T09:24:01,928 Created temporary directory: /tmp/pip-unpack-pz3rhkod
2025-11-16T09:24:01,929 Building wheels for collected packages: boltzgen
2025-11-16T09:24:01,933   Created temporary directory: /tmp/pip-wheel-l6nqapd_
2025-11-16T09:24:01,934   Destination directory: /tmp/pip-wheel-l6nqapd_
2025-11-16T09:24:01,936   Building wheel for boltzgen (pyproject.toml): started
2025-11-16T09:24:01,937   Running command Building wheel for boltzgen (pyproject.toml)
2025-11-16T09:24:02,580   running bdist_wheel
2025-11-16T09:24:02,601   running build
2025-11-16T09:24:02,601   running build_py
2025-11-16T09:24:02,608   creating build/lib/boltzgen
2025-11-16T09:24:02,610   copying src/boltzgen/__init__.py -> build/lib/boltzgen
2025-11-16T09:24:02,612   creating build/lib/boltzgen/resources
2025-11-16T09:24:02,613   copying src/boltzgen/resources/main.py -> build/lib/boltzgen/resources
2025-11-16T09:24:02,616   creating build/lib/boltzgen/data
2025-11-16T09:24:02,617   copying src/boltzgen/data/rmsd_computation.py -> build/lib/boltzgen/data
2025-11-16T09:24:02,620   copying src/boltzgen/data/const.py -> build/lib/boltzgen/data
2025-11-16T09:24:02,623   copying src/boltzgen/data/data.py -> build/lib/boltzgen/data
2025-11-16T09:24:02,627   copying src/boltzgen/data/mol.py -> build/lib/boltzgen/data
2025-11-16T09:24:02,630   copying src/boltzgen/data/__init__.py -> build/lib/boltzgen/data
2025-11-16T09:24:02,632   copying src/boltzgen/data/pad.py -> build/lib/boltzgen/data
2025-11-16T09:24:02,634   creating build/lib/boltzgen/cli
2025-11-16T09:24:02,636   copying src/boltzgen/cli/__init__.py -> build/lib/boltzgen/cli
2025-11-16T09:24:02,637   copying src/boltzgen/cli/boltzgen.py -> build/lib/boltzgen/cli
2025-11-16T09:24:02,642   creating build/lib/boltzgen/utils
2025-11-16T09:24:02,643   copying src/boltzgen/utils/pipeline_progress_bar.py -> build/lib/boltzgen/utils
2025-11-16T09:24:02,646   copying src/boltzgen/utils/__init__.py -> build/lib/boltzgen/utils
2025-11-16T09:24:02,647   copying src/boltzgen/utils/quiet.py -> build/lib/boltzgen/utils
2025-11-16T09:24:02,650   creating build/lib/boltzgen/model
2025-11-16T09:24:02,651   copying src/boltzgen/model/__init__.py -> build/lib/boltzgen/model
2025-11-16T09:24:02,653   creating build/lib/boltzgen/task
2025-11-16T09:24:02,654   copying src/boltzgen/task/__init__.py -> build/lib/boltzgen/task
2025-11-16T09:24:02,656   copying src/boltzgen/task/task.py -> build/lib/boltzgen/task
2025-11-16T09:24:02,660   creating build/lib/boltzgen/data/sample
2025-11-16T09:24:02,661   copying src/boltzgen/data/sample/sampler.py -> build/lib/boltzgen/data/sample
2025-11-16T09:24:02,663   copying src/boltzgen/data/sample/__init__.py -> build/lib/boltzgen/data/sample
2025-11-16T09:24:02,664   copying src/boltzgen/data/sample/cluster.py -> build/lib/boltzgen/data/sample
2025-11-16T09:24:02,667   creating build/lib/boltzgen/data/template
2025-11-16T09:24:02,668   copying src/boltzgen/data/template/features.py -> build/lib/boltzgen/data/template
2025-11-16T09:24:02,670   copying src/boltzgen/data/template/__init__.py -> build/lib/boltzgen/data/template
2025-11-16T09:24:02,672   creating build/lib/boltzgen/data/feature
2025-11-16T09:24:02,673   copying src/boltzgen/data/feature/featurizer.py -> build/lib/boltzgen/data/feature
2025-11-16T09:24:02,676   copying src/boltzgen/data/feature/__init__.py -> build/lib/boltzgen/data/feature
2025-11-16T09:24:02,678   creating build/lib/boltzgen/data/write
2025-11-16T09:24:02,679   copying src/boltzgen/data/write/pdb.py -> build/lib/boltzgen/data/write
2025-11-16T09:24:02,682   copying src/boltzgen/data/write/mmcif.py -> build/lib/boltzgen/data/write
2025-11-16T09:24:02,684   copying src/boltzgen/data/write/__init__.py -> build/lib/boltzgen/data/write
2025-11-16T09:24:02,686   creating build/lib/boltzgen/data/tokenize
2025-11-16T09:24:02,687   copying src/boltzgen/data/tokenize/__init__.py -> build/lib/boltzgen/data/tokenize
2025-11-16T09:24:02,689   copying src/boltzgen/data/tokenize/tokenizer.py -> build/lib/boltzgen/data/tokenize
2025-11-16T09:24:02,692   creating build/lib/boltzgen/data/select
2025-11-16T09:24:02,693   copying src/boltzgen/data/select/selector.py -> build/lib/boltzgen/data/select
2025-11-16T09:24:02,695   copying src/boltzgen/data/select/__init__.py -> build/lib/boltzgen/data/select
2025-11-16T09:24:02,697   copying src/boltzgen/data/select/protein.py -> build/lib/boltzgen/data/select
2025-11-16T09:24:02,700   creating build/lib/boltzgen/data/filter
2025-11-16T09:24:02,701   copying src/boltzgen/data/filter/__init__.py -> build/lib/boltzgen/data/filter
2025-11-16T09:24:02,704   creating build/lib/boltzgen/data/crop
2025-11-16T09:24:02,705   copying src/boltzgen/data/crop/multimer.py -> build/lib/boltzgen/data/crop
2025-11-16T09:24:02,708   copying src/boltzgen/data/crop/__init__.py -> build/lib/boltzgen/data/crop
2025-11-16T09:24:02,709   copying src/boltzgen/data/crop/cropper.py -> build/lib/boltzgen/data/crop
2025-11-16T09:24:02,712   creating build/lib/boltzgen/data/parse
2025-11-16T09:24:02,713   copying src/boltzgen/data/parse/schema.py -> build/lib/boltzgen/data/parse
2025-11-16T09:24:02,717   copying src/boltzgen/data/parse/a3m.py -> build/lib/boltzgen/data/parse
2025-11-16T09:24:02,719   copying src/boltzgen/data/parse/mmcif.py -> build/lib/boltzgen/data/parse
2025-11-16T09:24:02,723   copying src/boltzgen/data/parse/__init__.py -> build/lib/boltzgen/data/parse
2025-11-16T09:24:02,725   copying src/boltzgen/data/parse/pdb_parser.py -> build/lib/boltzgen/data/parse
2025-11-16T09:24:02,727   creating build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,729   copying src/boltzgen/data/filter/dynamic/error.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,731   copying src/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,733   copying src/boltzgen/data/filter/dynamic/filter.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,735   copying src/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,737   copying src/boltzgen/data/filter/dynamic/resolution.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,739   copying src/boltzgen/data/filter/dynamic/__init__.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,741   copying src/boltzgen/data/filter/dynamic/max_residues.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,743   copying src/boltzgen/data/filter/dynamic/date.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,745   copying src/boltzgen/data/filter/dynamic/size.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,747   copying src/boltzgen/data/filter/dynamic/confidence.py -> build/lib/boltzgen/data/filter/dynamic
2025-11-16T09:24:02,749   creating build/lib/boltzgen/data/filter/static
2025-11-16T09:24:02,750   copying src/boltzgen/data/filter/static/ligand.py -> build/lib/boltzgen/data/filter/static
2025-11-16T09:24:02,752   copying src/boltzgen/data/filter/static/filter.py -> build/lib/boltzgen/data/filter/static
2025-11-16T09:24:02,754   copying src/boltzgen/data/filter/static/polymer.py -> build/lib/boltzgen/data/filter/static
2025-11-16T09:24:02,756   copying src/boltzgen/data/filter/static/__init__.py -> build/lib/boltzgen/data/filter/static
2025-11-16T09:24:02,758   creating build/lib/boltzgen/model/validation
2025-11-16T09:24:02,760   copying src/boltzgen/model/validation/rcsb.py -> build/lib/boltzgen/model/validation
2025-11-16T09:24:02,761   copying src/boltzgen/model/validation/refolding.py -> build/lib/boltzgen/model/validation
2025-11-16T09:24:02,764   copying src/boltzgen/model/validation/validator.py -> build/lib/boltzgen/model/validation
2025-11-16T09:24:02,767   copying src/boltzgen/model/validation/design.py -> build/lib/boltzgen/model/validation
2025-11-16T09:24:02,770   creating build/lib/boltzgen/model/loss
2025-11-16T09:24:02,771   copying src/boltzgen/model/loss/__init__.py -> build/lib/boltzgen/model/loss
2025-11-16T09:24:02,773   copying src/boltzgen/model/loss/res_type.py -> build/lib/boltzgen/model/loss
2025-11-16T09:24:02,775   copying src/boltzgen/model/loss/bfactor.py -> build/lib/boltzgen/model/loss
2025-11-16T09:24:02,776   copying src/boltzgen/model/loss/diffusion.py -> build/lib/boltzgen/model/loss
2025-11-16T09:24:02,779   copying src/boltzgen/model/loss/validation.py -> build/lib/boltzgen/model/loss
2025-11-16T09:24:02,783   copying src/boltzgen/model/loss/distogram.py -> build/lib/boltzgen/model/loss
2025-11-16T09:24:02,785   copying src/boltzgen/model/loss/confidence.py -> build/lib/boltzgen/model/loss
2025-11-16T09:24:02,788   creating build/lib/boltzgen/model/layers
2025-11-16T09:24:02,789   copying src/boltzgen/model/layers/pair_averaging.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,791   copying src/boltzgen/model/layers/miniformer.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,793   copying src/boltzgen/model/layers/confidence_utils.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,796   copying src/boltzgen/model/layers/initialize.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,798   copying src/boltzgen/model/layers/pairformer.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,800   copying src/boltzgen/model/layers/outer_product_mean.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,802   copying src/boltzgen/model/layers/transition.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,804   copying src/boltzgen/model/layers/relative.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,806   copying src/boltzgen/model/layers/__init__.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,808   copying src/boltzgen/model/layers/dropout.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,810   copying src/boltzgen/model/layers/attention.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,812   copying src/boltzgen/model/layers/triangular.py -> build/lib/boltzgen/model/layers
2025-11-16T09:24:02,815   creating build/lib/boltzgen/model/models
2025-11-16T09:24:02,816   copying src/boltzgen/model/models/boltz.py -> build/lib/boltzgen/model/models
2025-11-16T09:24:02,819   copying src/boltzgen/model/models/__init__.py -> build/lib/boltzgen/model/models
2025-11-16T09:24:02,821   creating build/lib/boltzgen/model/optim
2025-11-16T09:24:02,823   copying src/boltzgen/model/optim/__init__.py -> build/lib/boltzgen/model/optim
2025-11-16T09:24:02,825   copying src/boltzgen/model/optim/ema.py -> build/lib/boltzgen/model/optim
2025-11-16T09:24:02,827   copying src/boltzgen/model/optim/scheduler.py -> build/lib/boltzgen/model/optim
2025-11-16T09:24:02,829   creating build/lib/boltzgen/model/modules
2025-11-16T09:24:02,830   copying src/boltzgen/model/modules/transformers.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,833   copying src/boltzgen/model/modules/affinity.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,835   copying src/boltzgen/model/modules/inverse_fold.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,838   copying src/boltzgen/model/modules/masker.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,840   copying src/boltzgen/model/modules/diffusion_conditioning.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,842   copying src/boltzgen/model/modules/__init__.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,844   copying src/boltzgen/model/modules/utils.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,846   copying src/boltzgen/model/modules/encoders.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,849   copying src/boltzgen/model/modules/scatter_utils.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,851   copying src/boltzgen/model/modules/diffusion.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,854   copying src/boltzgen/model/modules/trunk.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,856   copying src/boltzgen/model/modules/confidence.py -> build/lib/boltzgen/model/modules
2025-11-16T09:24:02,859   creating build/lib/boltzgen/model/layers/triangular_attention
2025-11-16T09:24:02,860   copying src/boltzgen/model/layers/triangular_attention/__init__.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-11-16T09:24:02,862   copying src/boltzgen/model/layers/triangular_attention/utils.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-11-16T09:24:02,865   copying src/boltzgen/model/layers/triangular_attention/attention.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-11-16T09:24:02,868   copying src/boltzgen/model/layers/triangular_attention/primitives.py -> build/lib/boltzgen/model/layers/triangular_attention
2025-11-16T09:24:02,871   creating build/lib/boltzgen/task/predict
2025-11-16T09:24:02,872   copying src/boltzgen/task/predict/data_ligands.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,875   copying src/boltzgen/task/predict/data_from_generated.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,878   copying src/boltzgen/task/predict/predict.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,880   copying src/boltzgen/task/predict/loading_utils.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,882   copying src/boltzgen/task/predict/__init__.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,884   copying src/boltzgen/task/predict/data_protein_binder.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,887   copying src/boltzgen/task/predict/data_from_yaml.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,889   copying src/boltzgen/task/predict/writer.py -> build/lib/boltzgen/task/predict
2025-11-16T09:24:02,893   creating build/lib/boltzgen/task/analyze
2025-11-16T09:24:02,894   copying src/boltzgen/task/analyze/analyze.py -> build/lib/boltzgen/task/analyze
2025-11-16T09:24:02,898   copying src/boltzgen/task/analyze/analyze_utils.py -> build/lib/boltzgen/task/analyze
2025-11-16T09:24:02,902   creating build/lib/boltzgen/task/filter
2025-11-16T09:24:02,903   copying src/boltzgen/task/filter/seqplot_utils.py -> build/lib/boltzgen/task/filter
2025-11-16T09:24:02,906   copying src/boltzgen/task/filter/filter.py -> build/lib/boltzgen/task/filter
2025-11-16T09:24:02,910   copying src/boltzgen/task/filter/__init__.py -> build/lib/boltzgen/task/filter
2025-11-16T09:24:02,912   creating build/lib/boltzgen/task/train
2025-11-16T09:24:02,913   copying src/boltzgen/task/train/train.py -> build/lib/boltzgen/task/train
2025-11-16T09:24:02,916   copying src/boltzgen/task/train/data.py -> build/lib/boltzgen/task/train
2025-11-16T09:24:02,920   copying src/boltzgen/task/train/__init__.py -> build/lib/boltzgen/task/train
2025-11-16T09:24:02,921   running egg_info
2025-11-16T09:24:02,933   writing src/boltzgen.egg-info/PKG-INFO
2025-11-16T09:24:02,939   writing dependency_links to src/boltzgen.egg-info/dependency_links.txt
2025-11-16T09:24:02,941   writing entry points to src/boltzgen.egg-info/entry_points.txt
2025-11-16T09:24:02,944   writing requirements to src/boltzgen.egg-info/requires.txt
2025-11-16T09:24:02,945   writing top-level names to src/boltzgen.egg-info/top_level.txt
2025-11-16T09:24:02,983   reading manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-11-16T09:24:02,992   adding license file 'LICENSE'
2025-11-16T09:24:03,000   writing manifest file 'src/boltzgen.egg-info/SOURCES.txt'
2025-11-16T09:24:03,019   creating build/lib/boltzgen/resources/config
2025-11-16T09:24:03,020   copying src/boltzgen/resources/config/analysis.yaml -> build/lib/boltzgen/resources/config
2025-11-16T09:24:03,022   copying src/boltzgen/resources/config/inverse_fold_only.yaml -> build/lib/boltzgen/resources/config
2025-11-16T09:24:03,025   copying src/boltzgen/resources/config/fold.yaml -> build/lib/boltzgen/resources/config
2025-11-16T09:24:03,027   copying src/boltzgen/resources/config/filtering.yaml -> build/lib/boltzgen/resources/config
2025-11-16T09:24:03,029   copying src/boltzgen/resources/config/inverse_fold.yaml -> build/lib/boltzgen/resources/config
2025-11-16T09:24:03,032   copying src/boltzgen/resources/config/design.yaml -> build/lib/boltzgen/resources/config
2025-11-16T09:24:03,034   copying src/boltzgen/resources/config/affinity.yaml -> build/lib/boltzgen/resources/config
2025-11-16T09:24:03,036   creating build/lib/boltzgen/resources/config/train
2025-11-16T09:24:03,037   copying src/boltzgen/resources/config/train/boltzgen.yaml -> build/lib/boltzgen/resources/config/train
2025-11-16T09:24:03,040   copying src/boltzgen/resources/config/train/inverse_folding.yaml -> build/lib/boltzgen/resources/config/train
2025-11-16T09:24:03,044   copying src/boltzgen/resources/config/train/boltzgen_small.yaml -> build/lib/boltzgen/resources/config/train
2025-11-16T09:24:03,074   installing to build/bdist.linux-armv7l/wheel
2025-11-16T09:24:03,075   running install
2025-11-16T09:24:03,098   running install_lib
2025-11-16T09:24:03,104   creating build/bdist.linux-armv7l/wheel
2025-11-16T09:24:03,107   creating build/bdist.linux-armv7l/wheel/boltzgen
2025-11-16T09:24:03,108   creating build/bdist.linux-armv7l/wheel/boltzgen/resources
2025-11-16T09:24:03,110   creating build/bdist.linux-armv7l/wheel/boltzgen/resources/config
2025-11-16T09:24:03,111   copying build/lib/boltzgen/resources/config/analysis.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-11-16T09:24:03,113   copying build/lib/boltzgen/resources/config/inverse_fold_only.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-11-16T09:24:03,115   copying build/lib/boltzgen/resources/config/fold.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-11-16T09:24:03,117   copying build/lib/boltzgen/resources/config/filtering.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-11-16T09:24:03,119   copying build/lib/boltzgen/resources/config/inverse_fold.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-11-16T09:24:03,121   copying build/lib/boltzgen/resources/config/design.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-11-16T09:24:03,123   copying build/lib/boltzgen/resources/config/affinity.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config
2025-11-16T09:24:03,126   creating build/bdist.linux-armv7l/wheel/boltzgen/resources/config/train
2025-11-16T09:24:03,127   copying build/lib/boltzgen/resources/config/train/boltzgen.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config/train
2025-11-16T09:24:03,130   copying build/lib/boltzgen/resources/config/train/inverse_folding.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config/train
2025-11-16T09:24:03,132   copying build/lib/boltzgen/resources/config/train/boltzgen_small.yaml -> build/bdist.linux-armv7l/wheel/./boltzgen/resources/config/train
2025-11-16T09:24:03,134   copying build/lib/boltzgen/resources/main.py -> build/bdist.linux-armv7l/wheel/./boltzgen/resources
2025-11-16T09:24:03,136   copying build/lib/boltzgen/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen
2025-11-16T09:24:03,138   creating build/bdist.linux-armv7l/wheel/boltzgen/data
2025-11-16T09:24:03,139   copying build/lib/boltzgen/data/rmsd_computation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-11-16T09:24:03,142   creating build/bdist.linux-armv7l/wheel/boltzgen/data/sample
2025-11-16T09:24:03,143   copying build/lib/boltzgen/data/sample/sampler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-11-16T09:24:03,145   copying build/lib/boltzgen/data/sample/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-11-16T09:24:03,147   copying build/lib/boltzgen/data/sample/cluster.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/sample
2025-11-16T09:24:03,149   copying build/lib/boltzgen/data/const.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-11-16T09:24:03,152   copying build/lib/boltzgen/data/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-11-16T09:24:03,156   copying build/lib/boltzgen/data/mol.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-11-16T09:24:03,160   creating build/bdist.linux-armv7l/wheel/boltzgen/data/template
2025-11-16T09:24:03,161   copying build/lib/boltzgen/data/template/features.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-11-16T09:24:03,163   copying build/lib/boltzgen/data/template/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/template
2025-11-16T09:24:03,164   copying build/lib/boltzgen/data/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-11-16T09:24:03,166   creating build/bdist.linux-armv7l/wheel/boltzgen/data/feature
2025-11-16T09:24:03,167   copying build/lib/boltzgen/data/feature/featurizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-11-16T09:24:03,171   copying build/lib/boltzgen/data/feature/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/feature
2025-11-16T09:24:03,173   creating build/bdist.linux-armv7l/wheel/boltzgen/data/write
2025-11-16T09:24:03,174   copying build/lib/boltzgen/data/write/pdb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-11-16T09:24:03,176   copying build/lib/boltzgen/data/write/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-11-16T09:24:03,179   copying build/lib/boltzgen/data/write/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/write
2025-11-16T09:24:03,181   creating build/bdist.linux-armv7l/wheel/boltzgen/data/tokenize
2025-11-16T09:24:03,182   copying build/lib/boltzgen/data/tokenize/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-11-16T09:24:03,184   copying build/lib/boltzgen/data/tokenize/tokenizer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/tokenize
2025-11-16T09:24:03,187   creating build/bdist.linux-armv7l/wheel/boltzgen/data/select
2025-11-16T09:24:03,189   copying build/lib/boltzgen/data/select/selector.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-11-16T09:24:03,191   copying build/lib/boltzgen/data/select/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-11-16T09:24:03,192   copying build/lib/boltzgen/data/select/protein.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/select
2025-11-16T09:24:03,196   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter
2025-11-16T09:24:03,198   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/dynamic
2025-11-16T09:24:03,199   copying build/lib/boltzgen/data/filter/dynamic/error.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,201   copying build/lib/boltzgen/data/filter/dynamic/pdb_id_txtfile.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,203   copying build/lib/boltzgen/data/filter/dynamic/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,205   copying build/lib/boltzgen/data/filter/dynamic/min_protein_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,207   copying build/lib/boltzgen/data/filter/dynamic/resolution.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,209   copying build/lib/boltzgen/data/filter/dynamic/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,211   copying build/lib/boltzgen/data/filter/dynamic/max_residues.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,212   copying build/lib/boltzgen/data/filter/dynamic/date.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,214   copying build/lib/boltzgen/data/filter/dynamic/size.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,216   copying build/lib/boltzgen/data/filter/dynamic/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/dynamic
2025-11-16T09:24:03,218   copying build/lib/boltzgen/data/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter
2025-11-16T09:24:03,220   creating build/bdist.linux-armv7l/wheel/boltzgen/data/filter/static
2025-11-16T09:24:03,221   copying build/lib/boltzgen/data/filter/static/ligand.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-11-16T09:24:03,223   copying build/lib/boltzgen/data/filter/static/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-11-16T09:24:03,225   copying build/lib/boltzgen/data/filter/static/polymer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-11-16T09:24:03,227   copying build/lib/boltzgen/data/filter/static/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/filter/static
2025-11-16T09:24:03,230   creating build/bdist.linux-armv7l/wheel/boltzgen/data/crop
2025-11-16T09:24:03,231   copying build/lib/boltzgen/data/crop/multimer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-11-16T09:24:03,233   copying build/lib/boltzgen/data/crop/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-11-16T09:24:03,235   copying build/lib/boltzgen/data/crop/cropper.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/crop
2025-11-16T09:24:03,237   copying build/lib/boltzgen/data/pad.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data
2025-11-16T09:24:03,239   creating build/bdist.linux-armv7l/wheel/boltzgen/data/parse
2025-11-16T09:24:03,240   copying build/lib/boltzgen/data/parse/schema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-11-16T09:24:03,244   copying build/lib/boltzgen/data/parse/a3m.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-11-16T09:24:03,246   copying build/lib/boltzgen/data/parse/mmcif.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-11-16T09:24:03,249   copying build/lib/boltzgen/data/parse/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-11-16T09:24:03,251   copying build/lib/boltzgen/data/parse/pdb_parser.py -> build/bdist.linux-armv7l/wheel/./boltzgen/data/parse
2025-11-16T09:24:03,254   creating build/bdist.linux-armv7l/wheel/boltzgen/cli
2025-11-16T09:24:03,255   copying build/lib/boltzgen/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-11-16T09:24:03,256   copying build/lib/boltzgen/cli/boltzgen.py -> build/bdist.linux-armv7l/wheel/./boltzgen/cli
2025-11-16T09:24:03,260   creating build/bdist.linux-armv7l/wheel/boltzgen/utils
2025-11-16T09:24:03,261   copying build/lib/boltzgen/utils/pipeline_progress_bar.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-11-16T09:24:03,264   copying build/lib/boltzgen/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-11-16T09:24:03,265   copying build/lib/boltzgen/utils/quiet.py -> build/bdist.linux-armv7l/wheel/./boltzgen/utils
2025-11-16T09:24:03,268   creating build/bdist.linux-armv7l/wheel/boltzgen/model
2025-11-16T09:24:03,269   creating build/bdist.linux-armv7l/wheel/boltzgen/model/validation
2025-11-16T09:24:03,270   copying build/lib/boltzgen/model/validation/rcsb.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-11-16T09:24:03,272   copying build/lib/boltzgen/model/validation/refolding.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-11-16T09:24:03,275   copying build/lib/boltzgen/model/validation/validator.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-11-16T09:24:03,278   copying build/lib/boltzgen/model/validation/design.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/validation
2025-11-16T09:24:03,281   creating build/bdist.linux-armv7l/wheel/boltzgen/model/loss
2025-11-16T09:24:03,282   copying build/lib/boltzgen/model/loss/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-11-16T09:24:03,283   copying build/lib/boltzgen/model/loss/res_type.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-11-16T09:24:03,285   copying build/lib/boltzgen/model/loss/bfactor.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-11-16T09:24:03,287   copying build/lib/boltzgen/model/loss/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-11-16T09:24:03,289   copying build/lib/boltzgen/model/loss/validation.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-11-16T09:24:03,293   copying build/lib/boltzgen/model/loss/distogram.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-11-16T09:24:03,295   copying build/lib/boltzgen/model/loss/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/loss
2025-11-16T09:24:03,298   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers
2025-11-16T09:24:03,299   copying build/lib/boltzgen/model/layers/pair_averaging.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,301   creating build/bdist.linux-armv7l/wheel/boltzgen/model/layers/triangular_attention
2025-11-16T09:24:03,303   copying build/lib/boltzgen/model/layers/triangular_attention/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-11-16T09:24:03,304   copying build/lib/boltzgen/model/layers/triangular_attention/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-11-16T09:24:03,307   copying build/lib/boltzgen/model/layers/triangular_attention/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-11-16T09:24:03,309   copying build/lib/boltzgen/model/layers/triangular_attention/primitives.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers/triangular_attention
2025-11-16T09:24:03,311   copying build/lib/boltzgen/model/layers/miniformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,314   copying build/lib/boltzgen/model/layers/confidence_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,316   copying build/lib/boltzgen/model/layers/initialize.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,318   copying build/lib/boltzgen/model/layers/pairformer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,320   copying build/lib/boltzgen/model/layers/outer_product_mean.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,322   copying build/lib/boltzgen/model/layers/transition.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,324   copying build/lib/boltzgen/model/layers/relative.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,326   copying build/lib/boltzgen/model/layers/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,328   copying build/lib/boltzgen/model/layers/dropout.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,330   copying build/lib/boltzgen/model/layers/attention.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,332   copying build/lib/boltzgen/model/layers/triangular.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/layers
2025-11-16T09:24:03,334   copying build/lib/boltzgen/model/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model
2025-11-16T09:24:03,336   creating build/bdist.linux-armv7l/wheel/boltzgen/model/models
2025-11-16T09:24:03,337   copying build/lib/boltzgen/model/models/boltz.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-11-16T09:24:03,340   copying build/lib/boltzgen/model/models/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/models
2025-11-16T09:24:03,343   creating build/bdist.linux-armv7l/wheel/boltzgen/model/optim
2025-11-16T09:24:03,344   copying build/lib/boltzgen/model/optim/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-11-16T09:24:03,345   copying build/lib/boltzgen/model/optim/ema.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-11-16T09:24:03,348   copying build/lib/boltzgen/model/optim/scheduler.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/optim
2025-11-16T09:24:03,350   creating build/bdist.linux-armv7l/wheel/boltzgen/model/modules
2025-11-16T09:24:03,351   copying build/lib/boltzgen/model/modules/transformers.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,354   copying build/lib/boltzgen/model/modules/affinity.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,356   copying build/lib/boltzgen/model/modules/inverse_fold.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,358   copying build/lib/boltzgen/model/modules/masker.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,361   copying build/lib/boltzgen/model/modules/diffusion_conditioning.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,363   copying build/lib/boltzgen/model/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,364   copying build/lib/boltzgen/model/modules/utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,367   copying build/lib/boltzgen/model/modules/encoders.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,370   copying build/lib/boltzgen/model/modules/scatter_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,372   copying build/lib/boltzgen/model/modules/diffusion.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,375   copying build/lib/boltzgen/model/modules/trunk.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,378   copying build/lib/boltzgen/model/modules/confidence.py -> build/bdist.linux-armv7l/wheel/./boltzgen/model/modules
2025-11-16T09:24:03,381   creating build/bdist.linux-armv7l/wheel/boltzgen/task
2025-11-16T09:24:03,383   creating build/bdist.linux-armv7l/wheel/boltzgen/task/predict
2025-11-16T09:24:03,384   copying build/lib/boltzgen/task/predict/data_ligands.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,387   copying build/lib/boltzgen/task/predict/data_from_generated.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,389   copying build/lib/boltzgen/task/predict/predict.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,392   copying build/lib/boltzgen/task/predict/loading_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,394   copying build/lib/boltzgen/task/predict/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,396   copying build/lib/boltzgen/task/predict/data_protein_binder.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,398   copying build/lib/boltzgen/task/predict/data_from_yaml.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,401   copying build/lib/boltzgen/task/predict/writer.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/predict
2025-11-16T09:24:03,405   creating build/bdist.linux-armv7l/wheel/boltzgen/task/analyze
2025-11-16T09:24:03,406   copying build/lib/boltzgen/task/analyze/analyze.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-11-16T09:24:03,410   copying build/lib/boltzgen/task/analyze/analyze_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/analyze
2025-11-16T09:24:03,413   copying build/lib/boltzgen/task/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-11-16T09:24:03,414   copying build/lib/boltzgen/task/task.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task
2025-11-16T09:24:03,417   creating build/bdist.linux-armv7l/wheel/boltzgen/task/filter
2025-11-16T09:24:03,418   copying build/lib/boltzgen/task/filter/seqplot_utils.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-11-16T09:24:03,420   copying build/lib/boltzgen/task/filter/filter.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-11-16T09:24:03,424   copying build/lib/boltzgen/task/filter/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/filter
2025-11-16T09:24:03,426   creating build/bdist.linux-armv7l/wheel/boltzgen/task/train
2025-11-16T09:24:03,427   copying build/lib/boltzgen/task/train/train.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-11-16T09:24:03,430   copying build/lib/boltzgen/task/train/data.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-11-16T09:24:03,433   copying build/lib/boltzgen/task/train/__init__.py -> build/bdist.linux-armv7l/wheel/./boltzgen/task/train
2025-11-16T09:24:03,434   running install_egg_info
2025-11-16T09:24:03,440   Copying src/boltzgen.egg-info to build/bdist.linux-armv7l/wheel/./boltzgen-0.1.3-py3.11.egg-info
2025-11-16T09:24:03,452   running install_scripts
2025-11-16T09:24:03,463   creating build/bdist.linux-armv7l/wheel/boltzgen-0.1.3.dist-info/WHEEL
2025-11-16T09:24:03,466   creating '/tmp/pip-wheel-l6nqapd_/.tmp-kll2g31m/boltzgen-0.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-11-16T09:24:03,468   adding 'boltzgen/__init__.py'
2025-11-16T09:24:03,470   adding 'boltzgen/cli/__init__.py'
2025-11-16T09:24:03,476   adding 'boltzgen/cli/boltzgen.py'
2025-11-16T09:24:03,479   adding 'boltzgen/data/__init__.py'
2025-11-16T09:24:03,487   adding 'boltzgen/data/const.py'
2025-11-16T09:24:03,495   adding 'boltzgen/data/data.py'
2025-11-16T09:24:03,500   adding 'boltzgen/data/mol.py'
2025-11-16T09:24:03,501   adding 'boltzgen/data/pad.py'
2025-11-16T09:24:03,503   adding 'boltzgen/data/rmsd_computation.py'
2025-11-16T09:24:03,505   adding 'boltzgen/data/crop/__init__.py'
2025-11-16T09:24:03,506   adding 'boltzgen/data/crop/cropper.py'
2025-11-16T09:24:03,508   adding 'boltzgen/data/crop/multimer.py'
2025-11-16T09:24:03,510   adding 'boltzgen/data/feature/__init__.py'
2025-11-16T09:24:03,519   adding 'boltzgen/data/feature/featurizer.py'
2025-11-16T09:24:03,522   adding 'boltzgen/data/filter/__init__.py'
2025-11-16T09:24:03,523   adding 'boltzgen/data/filter/dynamic/__init__.py'
2025-11-16T09:24:03,525   adding 'boltzgen/data/filter/dynamic/confidence.py'
2025-11-16T09:24:03,526   adding 'boltzgen/data/filter/dynamic/date.py'
2025-11-16T09:24:03,528   adding 'boltzgen/data/filter/dynamic/error.py'
2025-11-16T09:24:03,529   adding 'boltzgen/data/filter/dynamic/filter.py'
2025-11-16T09:24:03,531   adding 'boltzgen/data/filter/dynamic/max_residues.py'
2025-11-16T09:24:03,532   adding 'boltzgen/data/filter/dynamic/min_protein_residues.py'
2025-11-16T09:24:03,534   adding 'boltzgen/data/filter/dynamic/pdb_id_txtfile.py'
2025-11-16T09:24:03,535   adding 'boltzgen/data/filter/dynamic/resolution.py'
2025-11-16T09:24:03,537   adding 'boltzgen/data/filter/dynamic/size.py'
2025-11-16T09:24:03,538   adding 'boltzgen/data/filter/static/__init__.py'
2025-11-16T09:24:03,540   adding 'boltzgen/data/filter/static/filter.py'
2025-11-16T09:24:03,541   adding 'boltzgen/data/filter/static/ligand.py'
2025-11-16T09:24:03,543   adding 'boltzgen/data/filter/static/polymer.py'
2025-11-16T09:24:03,545   adding 'boltzgen/data/parse/__init__.py'
2025-11-16T09:24:03,546   adding 'boltzgen/data/parse/a3m.py'
2025-11-16T09:24:03,551   adding 'boltzgen/data/parse/mmcif.py'
2025-11-16T09:24:03,553   adding 'boltzgen/data/parse/pdb_parser.py'
2025-11-16T09:24:03,561   adding 'boltzgen/data/parse/schema.py'
2025-11-16T09:24:03,564   adding 'boltzgen/data/sample/__init__.py'
2025-11-16T09:24:03,565   adding 'boltzgen/data/sample/cluster.py'
2025-11-16T09:24:03,567   adding 'boltzgen/data/sample/sampler.py'
2025-11-16T09:24:03,568   adding 'boltzgen/data/select/__init__.py'
2025-11-16T09:24:03,571   adding 'boltzgen/data/select/protein.py'
2025-11-16T09:24:03,573   adding 'boltzgen/data/select/selector.py'
2025-11-16T09:24:03,575   adding 'boltzgen/data/template/__init__.py'
2025-11-16T09:24:03,576   adding 'boltzgen/data/template/features.py'
2025-11-16T09:24:03,578   adding 'boltzgen/data/tokenize/__init__.py'
2025-11-16T09:24:03,580   adding 'boltzgen/data/tokenize/tokenizer.py'
2025-11-16T09:24:03,581   adding 'boltzgen/data/write/__init__.py'
2025-11-16T09:24:03,583   adding 'boltzgen/data/write/mmcif.py'
2025-11-16T09:24:03,585   adding 'boltzgen/data/write/pdb.py'
2025-11-16T09:24:03,587   adding 'boltzgen/model/__init__.py'
2025-11-16T09:24:03,588   adding 'boltzgen/model/layers/__init__.py'
2025-11-16T09:24:03,590   adding 'boltzgen/model/layers/attention.py'
2025-11-16T09:24:03,592   adding 'boltzgen/model/layers/confidence_utils.py'
2025-11-16T09:24:03,593   adding 'boltzgen/model/layers/dropout.py'
2025-11-16T09:24:03,594   adding 'boltzgen/model/layers/initialize.py'
2025-11-16T09:24:03,596   adding 'boltzgen/model/layers/miniformer.py'
2025-11-16T09:24:03,597   adding 'boltzgen/model/layers/outer_product_mean.py'
2025-11-16T09:24:03,598   adding 'boltzgen/model/layers/pair_averaging.py'
2025-11-16T09:24:03,600   adding 'boltzgen/model/layers/pairformer.py'
2025-11-16T09:24:03,601   adding 'boltzgen/model/layers/relative.py'
2025-11-16T09:24:03,603   adding 'boltzgen/model/layers/transition.py'
2025-11-16T09:24:03,604   adding 'boltzgen/model/layers/triangular.py'
2025-11-16T09:24:03,606   adding 'boltzgen/model/layers/triangular_attention/__init__.py'
2025-11-16T09:24:03,607   adding 'boltzgen/model/layers/triangular_attention/attention.py'
2025-11-16T09:24:03,609   adding 'boltzgen/model/layers/triangular_attention/primitives.py'
2025-11-16T09:24:03,612   adding 'boltzgen/model/layers/triangular_attention/utils.py'
2025-11-16T09:24:03,613   adding 'boltzgen/model/loss/__init__.py'
2025-11-16T09:24:03,615   adding 'boltzgen/model/loss/bfactor.py'
2025-11-16T09:24:03,617   adding 'boltzgen/model/loss/confidence.py'
2025-11-16T09:24:03,619   adding 'boltzgen/model/loss/diffusion.py'
2025-11-16T09:24:03,620   adding 'boltzgen/model/loss/distogram.py'
2025-11-16T09:24:03,622   adding 'boltzgen/model/loss/res_type.py'
2025-11-16T09:24:03,626   adding 'boltzgen/model/loss/validation.py'
2025-11-16T09:24:03,628   adding 'boltzgen/model/models/__init__.py'
2025-11-16T09:24:03,634   adding 'boltzgen/model/models/boltz.py'
2025-11-16T09:24:03,637   adding 'boltzgen/model/modules/__init__.py'
2025-11-16T09:24:03,638   adding 'boltzgen/model/modules/affinity.py'
2025-11-16T09:24:03,641   adding 'boltzgen/model/modules/confidence.py'
2025-11-16T09:24:03,644   adding 'boltzgen/model/modules/diffusion.py'
2025-11-16T09:24:03,646   adding 'boltzgen/model/modules/diffusion_conditioning.py'
2025-11-16T09:24:03,649   adding 'boltzgen/model/modules/encoders.py'
2025-11-16T09:24:03,651   adding 'boltzgen/model/modules/inverse_fold.py'
2025-11-16T09:24:03,654   adding 'boltzgen/model/modules/masker.py'
2025-11-16T09:24:03,655   adding 'boltzgen/model/modules/scatter_utils.py'
2025-11-16T09:24:03,657   adding 'boltzgen/model/modules/transformers.py'
2025-11-16T09:24:03,659   adding 'boltzgen/model/modules/trunk.py'
2025-11-16T09:24:03,661   adding 'boltzgen/model/modules/utils.py'
2025-11-16T09:24:03,663   adding 'boltzgen/model/optim/__init__.py'
2025-11-16T09:24:03,665   adding 'boltzgen/model/optim/ema.py'
2025-11-16T09:24:03,666   adding 'boltzgen/model/optim/scheduler.py'
2025-11-16T09:24:03,670   adding 'boltzgen/model/validation/design.py'
2025-11-16T09:24:03,671   adding 'boltzgen/model/validation/rcsb.py'
2025-11-16T09:24:03,674   adding 'boltzgen/model/validation/refolding.py'
2025-11-16T09:24:03,676   adding 'boltzgen/model/validation/validator.py'
2025-11-16T09:24:03,678   adding 'boltzgen/resources/main.py'
2025-11-16T09:24:03,680   adding 'boltzgen/resources/config/affinity.yaml'
2025-11-16T09:24:03,681   adding 'boltzgen/resources/config/analysis.yaml'
2025-11-16T09:24:03,683   adding 'boltzgen/resources/config/design.yaml'
2025-11-16T09:24:03,684   adding 'boltzgen/resources/config/filtering.yaml'
2025-11-16T09:24:03,685   adding 'boltzgen/resources/config/fold.yaml'
2025-11-16T09:24:03,687   adding 'boltzgen/resources/config/inverse_fold.yaml'
2025-11-16T09:24:03,688   adding 'boltzgen/resources/config/inverse_fold_only.yaml'
2025-11-16T09:24:03,691   adding 'boltzgen/resources/config/train/boltzgen.yaml'
2025-11-16T09:24:03,693   adding 'boltzgen/resources/config/train/boltzgen_small.yaml'
2025-11-16T09:24:03,695   adding 'boltzgen/resources/config/train/inverse_folding.yaml'
2025-11-16T09:24:03,696   adding 'boltzgen/task/__init__.py'
2025-11-16T09:24:03,698   adding 'boltzgen/task/task.py'
2025-11-16T09:24:03,704   adding 'boltzgen/task/analyze/analyze.py'
2025-11-16T09:24:03,711   adding 'boltzgen/task/analyze/analyze_utils.py'
2025-11-16T09:24:03,713   adding 'boltzgen/task/filter/__init__.py'
2025-11-16T09:24:03,719   adding 'boltzgen/task/filter/filter.py'
2025-11-16T09:24:03,722   adding 'boltzgen/task/filter/seqplot_utils.py'
2025-11-16T09:24:03,723   adding 'boltzgen/task/predict/__init__.py'
2025-11-16T09:24:03,727   adding 'boltzgen/task/predict/data_from_generated.py'
2025-11-16T09:24:03,729   adding 'boltzgen/task/predict/data_from_yaml.py'
2025-11-16T09:24:03,731   adding 'boltzgen/task/predict/data_ligands.py'
2025-11-16T09:24:03,734   adding 'boltzgen/task/predict/data_protein_binder.py'
2025-11-16T09:24:03,735   adding 'boltzgen/task/predict/loading_utils.py'
2025-11-16T09:24:03,737   adding 'boltzgen/task/predict/predict.py'
2025-11-16T09:24:03,739   adding 'boltzgen/task/predict/writer.py'
2025-11-16T09:24:03,741   adding 'boltzgen/task/train/__init__.py'
2025-11-16T09:24:03,746   adding 'boltzgen/task/train/data.py'
2025-11-16T09:24:03,748   adding 'boltzgen/task/train/train.py'
2025-11-16T09:24:03,750   adding 'boltzgen/utils/__init__.py'
2025-11-16T09:24:03,752   adding 'boltzgen/utils/pipeline_progress_bar.py'
2025-11-16T09:24:03,754   adding 'boltzgen/utils/quiet.py'
2025-11-16T09:24:03,757   adding 'boltzgen-0.1.3.dist-info/licenses/LICENSE'
2025-11-16T09:24:03,759   adding 'boltzgen-0.1.3.dist-info/METADATA'
2025-11-16T09:24:03,760   adding 'boltzgen-0.1.3.dist-info/WHEEL'
2025-11-16T09:24:03,761   adding 'boltzgen-0.1.3.dist-info/entry_points.txt'
2025-11-16T09:24:03,762   adding 'boltzgen-0.1.3.dist-info/top_level.txt'
2025-11-16T09:24:03,764   adding 'boltzgen-0.1.3.dist-info/RECORD'
2025-11-16T09:24:03,770   removing build/bdist.linux-armv7l/wheel
2025-11-16T09:24:03,911   Building wheel for boltzgen (pyproject.toml): finished with status 'done'
2025-11-16T09:24:03,921   Created wheel for boltzgen: filename=boltzgen-0.1.3-py3-none-any.whl size=341966 sha256=1029da6f74a8b125d8c6c34beb6b0a7f71a3d57461631c4dc6f788b573c10247
2025-11-16T09:24:03,922   Stored in directory: /tmp/pip-ephem-wheel-cache-su3477vl/wheels/c9/80/a7/0e68782ccb47625bdc506e41cd6d109b9e55d62004bf4f0f39
2025-11-16T09:24:03,937 Successfully built boltzgen
2025-11-16T09:24:03,959 Removed build tracker: '/tmp/pip-build-tracker-ng6wt639'