2025-11-17T13:14:33,366 Created temporary directory: /tmp/pip-ephem-wheel-cache-acar9_1e
2025-11-17T13:14:33,368 Created temporary directory: /tmp/pip-build-tracker-r0spjmov
2025-11-17T13:14:33,369 Initialized build tracking at /tmp/pip-build-tracker-r0spjmov
2025-11-17T13:14:33,369 Created build tracker: /tmp/pip-build-tracker-r0spjmov
2025-11-17T13:14:33,369 Entered build tracker: /tmp/pip-build-tracker-r0spjmov
2025-11-17T13:14:33,370 Created temporary directory: /tmp/pip-wheel-plkgeouq
2025-11-17T13:14:33,374 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-17T13:14:33,376 Created temporary directory: /tmp/pip-ephem-wheel-cache-6tt0ubx4
2025-11-17T13:14:33,397 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-17T13:14:33,401 2 location(s) to search for versions of scipion-em-xmipp:
2025-11-17T13:14:33,401 * https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,401 * https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,402 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,403 Getting page https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,404 Found index url https://pypi.org/simple
2025-11-17T13:14:33,617 Fetched page https://pypi.org/simple/scipion-em-xmipp/ as application/vnd.pypi.simple.v1+json
2025-11-17T13:14:33,631   Found link https://files.pythonhosted.org/packages/ac/e8/0b29e46431aa1223befa2a698d198863c12304274306b16832cfd454e3f9/scipion-em-xmipp-1.0.0a1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0a1
2025-11-17T13:14:33,632   Found link https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0b1
2025-11-17T13:14:33,632   Found link https://files.pythonhosted.org/packages/27/04/5659119b2d4622b274555e6175dec47a4dca6dc7eba56bc469bbadac71a3/scipion-em-xmipp-19.3b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3b0
2025-11-17T13:14:33,633   Found link https://files.pythonhosted.org/packages/3a/d9/3171cd2d43aa40510db86a86ed766d314f549f4583119548e538ae97444f/scipion-em-xmipp-19.3.1b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.1b0
2025-11-17T13:14:33,634   Found link https://files.pythonhosted.org/packages/50/7c/87e8f5031f14f5daf04b3a77e5018028c4d47325635d683428fbe478e719/scipion-em-xmipp-19.3.2b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.2b0
2025-11-17T13:14:33,635   Found link https://files.pythonhosted.org/packages/02/10/513a51ad147a24e33797b5114b67e98038390b70cc17df25a7191d468134/scipion-em-xmipp-19.3.3b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b0
2025-11-17T13:14:33,636   Found link https://files.pythonhosted.org/packages/8f/92/d59d3d7361e247fb3d74ffe5920f7353b38a3a051f91d6b9bf6357581fe9/scipion-em-xmipp-19.3.3b2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b2
2025-11-17T13:14:33,636   Found link https://files.pythonhosted.org/packages/30/cc/45f5761a8c4f656881dbe55c351a268bcbdfd9ca9d159900755848ecd657/scipion-em-xmipp-19.3.3b3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b3
2025-11-17T13:14:33,637   Found link https://files.pythonhosted.org/packages/13/53/fd16ab9eff7bc97c50fcab52ecff83523239910c2da6717d84def4678bc5/scipion-em-xmipp-19.3.3b4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b4
2025-11-17T13:14:33,638   Found link https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b5
2025-11-17T13:14:33,638   Found link https://files.pythonhosted.org/packages/28/82/40c0b017805993ad642717a1b7e835ff4124a29c5fdf5d825103c2fe415f/scipion-em-xmipp-19.3.3b6.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b6
2025-11-17T13:14:33,640   Found link https://files.pythonhosted.org/packages/23/da/189566d17133de5827f7850766cde4176f6845b63f0b5c485b2306753307/scipion-em-xmipp-19.3.3b7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b7
2025-11-17T13:14:33,640   Found link https://files.pythonhosted.org/packages/a7/84/175f6dbf280848bd4b1053321385381a2930fa37116241645254068f01b2/scipion-em-xmipp-19.3.3b8.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b8
2025-11-17T13:14:33,641   Found link https://files.pythonhosted.org/packages/b8/12/cd3ddb5a1d8aa235c8791e2b230b121477d3bc5ee63792d8d7e66738d835/scipion-em-xmipp-19.4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4
2025-11-17T13:14:33,641   Found link https://files.pythonhosted.org/packages/c0/5b/4ecca6d5dbc925ec19ce98bd3e76b2459be8efd280241cab17f57b7b8bf1/scipion-em-xmipp-19.4.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.1
2025-11-17T13:14:33,642   Found link https://files.pythonhosted.org/packages/78/a5/013710e0192dc4d8312b06b17c393d9ae01ee6370fac5c0374ab0f99d540/scipion-em-xmipp-19.4.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.2
2025-11-17T13:14:33,643   Found link https://files.pythonhosted.org/packages/8a/e5/2a7960924fff02c71b3af6308001de11cf4d754db3355562692aa7fc4186/scipion-em-xmipp-19.4.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.3
2025-11-17T13:14:33,643   Found link https://files.pythonhosted.org/packages/52/ed/b56f4f2e007e7ca794764ed4afcac73e606572df741b4b7e5351d079d3a7/scipion-em-xmipp-20.7a0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a0
2025-11-17T13:14:33,644   Found link https://files.pythonhosted.org/packages/e9/91/2898f8c10bd384d539971596cb921f0b0a4f634aaac12f7f19a757cd678d/scipion-em-xmipp-20.7a1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a1
2025-11-17T13:14:33,645   Found link https://files.pythonhosted.org/packages/9f/39/174135aff5c22a469eaf698e5fd714c5459420de3e293f5277218afd09df/scipion-em-xmipp-20.7a2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a2
2025-11-17T13:14:33,646   Found link https://files.pythonhosted.org/packages/e7/b3/7f5ad38626efef9dd54836f2ee1348af78faf9d066f96f98fd84f027ff09/scipion-em-xmipp-20.7a3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a3
2025-11-17T13:14:33,646   Found link https://files.pythonhosted.org/packages/44/c0/d1503a132e26d05c8dcfed83e592a394e8c5ac803ac60850bd2213c2a993/scipion-em-xmipp-20.7a4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a4
2025-11-17T13:14:33,647   Found link https://files.pythonhosted.org/packages/7a/73/c2a026a983021b3d0e91fef78139351a17cf991d00ef0e5c94207c4142fd/scipion-em-xmipp-20.7a5.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a5
2025-11-17T13:14:33,648   Found link https://files.pythonhosted.org/packages/bf/19/d8f24d55b90ec6a8f113f36c718cf18ae1e5f037244d6b3eea34d52f0698/scipion-em-xmipp-20.7a6.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a6
2025-11-17T13:14:33,649   Found link https://files.pythonhosted.org/packages/94/eb/3c90ecf9b9ed73081e47f1f7b89c69b9f27dc671cfbd9e5d8ddbe74e504a/scipion-em-xmipp-20.7a7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a7
2025-11-17T13:14:33,649   Found link https://files.pythonhosted.org/packages/9f/04/28714f70cf8f620fdaf8b7352646dc56167d6fd68fd7d1c2d018d6e14881/scipion-em-xmipp-20.7a8.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a8
2025-11-17T13:14:33,650   Found link https://files.pythonhosted.org/packages/b0/3b/adc47a380165d5ead9fb40a6ed2207b1ba535a61c584893eb2498abc9df4/scipion-em-xmipp-20.7a9.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a9
2025-11-17T13:14:33,651   Found link https://files.pythonhosted.org/packages/91/eb/d5eb411231b951e009d79e31b52fb1b33e7e45d5f9c2f61d30dc17d7243f/scipion-em-xmipp-20.7b1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7b1
2025-11-17T13:14:33,652   Found link https://files.pythonhosted.org/packages/d8/a1/47793f263b8c63001cf71784ef106a824a418992b86e107369b11831ac40/scipion-em-xmipp-20.7rc0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc0
2025-11-17T13:14:33,652   Found link https://files.pythonhosted.org/packages/8d/8b/9a1165d1cdd43775891cee272edd06ff863dbc5750b52698a5c679025b71/scipion-em-xmipp-20.7rc1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc1
2025-11-17T13:14:33,653   Found link https://files.pythonhosted.org/packages/fd/9e/356da427dc4ff0203f2ce772d1342b9157862c4ac8d7570ba999370ce5a6/scipion-em-xmipp-20.7rc2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc2
2025-11-17T13:14:33,653   Found link https://files.pythonhosted.org/packages/4b/91/7ab3cd278a2dd956697fed5360ec4bd7adc60bf09e9dfd5e81ad84138094/scipion-em-xmipp-20.7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7
2025-11-17T13:14:33,654   Found link https://files.pythonhosted.org/packages/9f/93/9d7fe8e98125a90c270231da6e953e9479571bba3178a2ce0aec2275e4e1/scipion-em-xmipp-20.7.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.1
2025-11-17T13:14:33,655   Found link https://files.pythonhosted.org/packages/f7/17/ef967680746c66261fd9194a975f3aa637ce669f1476d569c71cf00a668a/scipion-em-xmipp-20.7.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.2
2025-11-17T13:14:33,655   Found link https://files.pythonhosted.org/packages/cc/65/41cab65b454b1dbad052705a98f73713d3b194679fe775fe0e0b5162c870/scipion-em-xmipp-20.7.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.3
2025-11-17T13:14:33,656   Found link https://files.pythonhosted.org/packages/de/a7/8b5a5a1d098004909c0b3718b50e50e3fb807b8894c725196c432ddf743e/scipion-em-xmipp-20.7.4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.4
2025-11-17T13:14:33,658   Found link https://files.pythonhosted.org/packages/30/56/fb7770e78e0497916e99ae018b9ecfb8562c44573ae01b516b1f67111bee/scipion-em-xmipp-21.6.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 21.6.1
2025-11-17T13:14:33,659   Found link https://files.pythonhosted.org/packages/aa/05/fa0cf1c45ae8217b88b7b0b6beb2b1a6cde9a707f1d3e0041d480d369d16/scipion-em-xmipp-21.9.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 21.9.0
2025-11-17T13:14:33,660   Found link https://files.pythonhosted.org/packages/d1/c2/a9ce741e455c38d13caeb7afa5e7d789abc3e651145758154ba11e4b7ae2/scipion-em-xmipp-22.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.1.0
2025-11-17T13:14:33,661   Found link https://files.pythonhosted.org/packages/d9/58/d56a9d6ff442a61dda76b90468d96e88cc7f90d0bb5949e60a990ff0d222/scipion-em-xmipp-22.4.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.4.0
2025-11-17T13:14:33,661   Found link https://files.pythonhosted.org/packages/6b/f1/ba22bb0f99b140d9ed6719988feeea6655435732717a818c115dd7956336/scipion-em-xmipp-22.7.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.7.0
2025-11-17T13:14:33,662   Found link https://files.pythonhosted.org/packages/b5/40/30c9fa41a55b82a2f0ffacb492238cf31fa078c3460bc3af4e234168ef3a/scipion-em-xmipp-22.7.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.7.0.1
2025-11-17T13:14:33,663   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/05/89/04edc1c3a844b63c761bfe040d5a736b75790e666140d0cbb75026a73f99/scipion_em_xmipp-22.7.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,663   Found link https://files.pythonhosted.org/packages/28/3f/cae77a54756c2d6e5e1194e1d9fc1a3d9c4358c0d3fb91b810b01acac795/scipion-em-xmipp-22.11.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.0
2025-11-17T13:14:33,664   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/b6/d7/46df8c1d4a69c61fb855f39c16fe22b64aef127402689b1b9775d5fef8c5/scipion_em_xmipp-22.11.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,665   Found link https://files.pythonhosted.org/packages/44/de/28fda7563cbf52139e73144cf875accb364668c89f32fbba13823ac08cc6/scipion-em-xmipp-22.11.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.1
2025-11-17T13:14:33,666   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/fc/2e/58376602d91e508a32b6d296125b4710cdeaf1452870350a1e47e3c1eb0a/scipion_em_xmipp-22.11.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,666   Found link https://files.pythonhosted.org/packages/fa/2c/0e40ab89093227353ce28d4569016c050188a75b7c4fd319e14a6c9464bf/scipion-em-xmipp-22.11.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.2
2025-11-17T13:14:33,667   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/d0/93/33cd393b1b08753546dd9e03b3a717239d6ee2e72659b982816e68065d09/scipion_em_xmipp-22.11.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,667   Found link https://files.pythonhosted.org/packages/ff/01/69dbd2d65d7a36546cab3d73332094923714d78358083a5c128cd2cc5a95/scipion-em-xmipp-23.3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.0
2025-11-17T13:14:33,668   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/06/09/df9dae8a63e0bc118b3752d55eaa23a9488b73d4a7b0842b73022f66c12a/scipion_em_xmipp-23.3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,668   Found link https://files.pythonhosted.org/packages/12/12/c7f9bb4e4033fca462ba95d480f2b4d0a6bb5449e3c32ff7557204ae9e4a/scipion-em-xmipp-23.3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.1
2025-11-17T13:14:33,669   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/96/b5/29fc82e53cb44590b141f59582152a0b506c993f0788be4471684ec5f02c/scipion_em_xmipp-23.3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,670   Found link https://files.pythonhosted.org/packages/2e/c6/dc675f99b407685ae55c5677f65e6d75f554051916a1248b25a848fef915/scipion-em-xmipp-23.3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.2
2025-11-17T13:14:33,670   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/c6/e0/2b882b8a45cabdfbe7f14d3c88ebe3641319cbe83ef5e7551c7094e99664/scipion_em_xmipp-23.3.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,671   Found link https://files.pythonhosted.org/packages/90/5f/c90a6c5e3135c917a405eb1ca33eb1d964a7990d929b6c04d30088f25de8/scipion-em-xmipp-23.3.0.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.3
2025-11-17T13:14:33,672   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/3f/c9/f24bbd58c9813a58c2e3508de9e6ee57b1d77e9f3688efe637056c337bf9/scipion_em_xmipp-23.3.0.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,672   Found link https://files.pythonhosted.org/packages/88/80/e4c6257566147cd0f156d98966aec432f69a2e3eb811c4a7cb277a640fe0/scipion-em-xmipp-23.7.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.7.0.0
2025-11-17T13:14:33,673   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/14/f5/d567084d746df5ac85c40ed32598bf8e6d94ceda86b7f4d388912e2fd54f/scipion_em_xmipp-23.7.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,674   Found link https://files.pythonhosted.org/packages/30/d5/1bda8372a43956e91dae7a96e782b1011269097d638abae70825edca9f42/scipion-em-xmipp-23.11.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.11.0.0
2025-11-17T13:14:33,675   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/50/e9/da76f93acf09261cc2c6d201ac8d4fea6cfa183effbbf4353027fd9a523d/scipion_em_xmipp-23.11.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,675   Found link https://files.pythonhosted.org/packages/ee/16/77d7958eb37d59013b0797cef20a107f6cbcc5ca395a2baf2eeebdd0e871/scipion-em-xmipp-23.11.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.11.0.1
2025-11-17T13:14:33,676   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/3c/c8/ed4b6aadb9633b540b6e9346770f9f91720d2d29e235429498ab07df8d61/scipion_em_xmipp-23.11.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,677   Found link https://files.pythonhosted.org/packages/f7/31/a0154ef1de37fcd44f21df54dce1bcd0ce424343407d59bd13d88399ffdd/scipion-em-xmipp-24.6.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 24.6.0.0
2025-11-17T13:14:33,677   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/63/b2/5ca583d8073d12fa9f058fc6dc2b94b3c23a047e7a53c070f00d45a99e5d/scipion_em_xmipp-24.6.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,678   Found link https://files.pythonhosted.org/packages/8e/59/1b8f32e2023baa544de460d57507b0b5de40fdae1b93ea7d10bcb3506a9b/scipion-em-xmipp-24.12.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 24.12.2
2025-11-17T13:14:33,678   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/4c/5d/b29ccdf2fdf9494d9b00b8cfca920942f3b214d9b0c8d70132801662927f/scipion_em_xmipp-24.12.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,679   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/c1/bf/cc86765cd150ff54b602b134f896a19b64421cd47a15e0ceb66dbe1b09de/scipion_em_xmipp-25.6.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T13:14:33,680   Found link https://files.pythonhosted.org/packages/1e/05/167b0a1d8068aee3fbf4f8ffc35e5a1502b498e838be1740ef2021339fef/scipion_em_xmipp-25.6.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 25.6.0
2025-11-17T13:14:33,680   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/7a/b5/a22cb3670513caa0624ef548caa0554aea711949d4f38d6bbde3cdb8560b/scipion_em_xmipp-25.6.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T13:14:33,681   Found link https://files.pythonhosted.org/packages/c1/50/f384e19d33b6a6cf39ae16afa1bc890a66ad8c03100e89228518fad0002e/scipion_em_xmipp-25.6.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 25.6.1
2025-11-17T13:14:33,682   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/e5/98/8143dd6ccebf3ff2798a69e361c03a08a85ad63b2e7978e3d7314b63b5d4/scipion_em_xmipp-26.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T13:14:33,683   Found link https://files.pythonhosted.org/packages/04/c5/1b430c39044634fccdcc06d491953043bc19b1c0e3ff27fd492c45ce5e9f/scipion_em_xmipp-26.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.0
2025-11-17T13:14:33,684 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,685 Getting page https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,686 Found index url https://www.piwheels.org/simple
2025-11-17T13:14:33,851 Fetched page https://www.piwheels.org/simple/scipion-em-xmipp/ as text/html
2025-11-17T13:14:33,858   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-25.6.1-py3-none-any.whl#sha256=e9e0354c63ae8258705005ccdbfb27a7cd7c1d660e53720ec52d7bec9949c716 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T13:14:33,858   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-25.6.0-py3-none-any.whl#sha256=a8ccd10f0a2355ebed5a8dc0b88fb5e2287546990418ac116c382769fe83b5e3 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T13:14:33,859   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.3-py3-none-any.whl#sha256=ea77b5ac2a36d9901112289b002af371e3edde22d086a8b235e0e183efcbd5a1 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,859   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.2-py3-none-any.whl#sha256=a70bf8f019159fd571f91a44386526735eae928603b34595012e06a0e1c21402 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,860   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.1-py3-none-any.whl#sha256=faa5b9a08d80d53471eb4e1f6d39c0aefe670b40f4afef52d1beeaab0e023df4 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,860   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4-py3-none-any.whl#sha256=78b3ad6e93c4bf5109c6f2ab00c6520ed4588e54e09e12eb3d7d452848a36bf9 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,860   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b8-py3-none-any.whl#sha256=eeb1d3f9855d002deb07c4eedb6e1ad89779db86dbcfec3d04ee8e03385c0df5 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,861   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b7-py3-none-any.whl#sha256=9b5a7d175d0662fb4b210ece019e2d38397f02a8d1c5adf51442cd6dc77c0a52 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,862   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b6-py3-none-any.whl#sha256=2d45787d6e69a1317464b855967853e3ac7a22b3b27f17e8a636753040a93035 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,862   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b5-py3-none-any.whl#sha256=a60f524330ca169f9e3c15f5c35c00b8d0144fbfa2127fd8172ecbf45a823680 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,863   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b4-py3-none-any.whl#sha256=d419905e626e6790ed00972938fb269e5be969b77ac02c2ec581431c14ca9c06 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,864   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b3-py3-none-any.whl#sha256=937521bdd7ccf2f2b88c1d6a1c9e70265dc1efd65495c57d291ae560bebdd535 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,864   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b2-py3-none-any.whl#sha256=dc34830c4791cef76913516e175f6c69d921dd26db0b2c11395e64bcfff4354e (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,865   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,866   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,866   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,866   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,867   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,867   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T13:14:33,868 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,869 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T13:14:33,893 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates
2025-11-17T13:14:33,911 Collecting scipion-em-xmipp==26.0.0
2025-11-17T13:14:33,914   Created temporary directory: /tmp/pip-unpack-s63s1n_j
2025-11-17T13:14:34,048   Downloading scipion_em_xmipp-26.0.0.tar.gz (1.5 MB)
2025-11-17T13:14:34,969   Added scipion-em-xmipp==26.0.0 from https://files.pythonhosted.org/packages/04/c5/1b430c39044634fccdcc06d491953043bc19b1c0e3ff27fd492c45ce5e9f/scipion_em_xmipp-26.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-r0spjmov'
2025-11-17T13:14:34,973   Created temporary directory: /tmp/pip-build-env-r8d1x9oi
2025-11-17T13:14:34,978   Installing build dependencies: started
2025-11-17T13:14:34,979   Running command pip subprocess to install build dependencies
2025-11-17T13:14:36,120   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-11-17T13:14:36,744   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-17T13:14:36,768   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-17T13:14:38,480   Collecting setuptools
2025-11-17T13:14:38,567     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-11-17T13:14:41,470   Installing collected packages: setuptools
2025-11-17T13:14:45,117   Successfully installed setuptools-80.9.0
2025-11-17T13:14:45,386   Installing build dependencies: finished with status 'done'
2025-11-17T13:14:45,393   Getting requirements to build wheel: started
2025-11-17T13:14:45,394   Running command Getting requirements to build wheel
2025-11-17T13:14:45,989   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-17T13:14:45,990   `flat-layout` detected -- analysing .
2025-11-17T13:14:46,237   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess']
2025-11-17T13:14:46,242   /tmp/pip-build-env-r8d1x9oi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-17T13:14:46,242   !!

2025-11-17T13:14:46,243           ********************************************************************************
2025-11-17T13:14:46,243           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-17T13:14:46,244           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-17T13:14:46,245           or your builds will no longer be supported.

2025-11-17T13:14:46,246           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-17T13:14:46,246           ********************************************************************************

2025-11-17T13:14:46,247   !!
2025-11-17T13:14:46,248     corresp(dist, value, root_dir)
2025-11-17T13:14:46,334   running egg_info
2025-11-17T13:14:46,341   writing scipion_em_xmipp.egg-info/PKG-INFO
2025-11-17T13:14:46,344   writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-17T13:14:46,346   writing entry points to scipion_em_xmipp.egg-info/entry_points.txt
2025-11-17T13:14:46,348   writing requirements to scipion_em_xmipp.egg-info/requires.txt
2025-11-17T13:14:46,349   writing top-level names to scipion_em_xmipp.egg-info/top_level.txt
2025-11-17T13:14:46,392   reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T13:14:46,407   reading manifest template 'MANIFEST.in'
2025-11-17T13:14:46,409   adding license file 'LICENSE'
2025-11-17T13:14:46,423   writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T13:14:46,522   Getting requirements to build wheel: finished with status 'done'
2025-11-17T13:14:46,526   Created temporary directory: /tmp/pip-modern-metadata-cfl4kf3b
2025-11-17T13:14:46,528   Preparing metadata (pyproject.toml): started
2025-11-17T13:14:46,530   Running command Preparing metadata (pyproject.toml)
2025-11-17T13:14:47,080   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-17T13:14:47,080   `flat-layout` detected -- analysing .
2025-11-17T13:14:47,099   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess']
2025-11-17T13:14:47,103   /tmp/pip-build-env-r8d1x9oi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-17T13:14:47,104   !!

2025-11-17T13:14:47,105           ********************************************************************************
2025-11-17T13:14:47,106           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-17T13:14:47,107           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-17T13:14:47,108           or your builds will no longer be supported.

2025-11-17T13:14:47,109           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-17T13:14:47,110           ********************************************************************************

2025-11-17T13:14:47,111   !!
2025-11-17T13:14:47,112     corresp(dist, value, root_dir)
2025-11-17T13:14:47,197   running dist_info
2025-11-17T13:14:47,209   creating /tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info
2025-11-17T13:14:47,210   writing /tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/PKG-INFO
2025-11-17T13:14:47,213   writing dependency_links to /tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-17T13:14:47,215   writing entry points to /tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/entry_points.txt
2025-11-17T13:14:47,217   writing requirements to /tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/requires.txt
2025-11-17T13:14:47,218   writing top-level names to /tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/top_level.txt
2025-11-17T13:14:47,219   writing manifest file '/tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T13:14:47,257   reading manifest file '/tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T13:14:47,259   reading manifest template 'MANIFEST.in'
2025-11-17T13:14:47,261   adding license file 'LICENSE'
2025-11-17T13:14:47,272   writing manifest file '/tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T13:14:47,273   creating '/tmp/pip-modern-metadata-cfl4kf3b/scipion_em_xmipp-26.0.0.dist-info'
2025-11-17T13:14:47,400   Preparing metadata (pyproject.toml): finished with status 'done'
2025-11-17T13:14:47,405   Source in /tmp/pip-wheel-plkgeouq/scipion-em-xmipp_a82bd5b0a1a24eae8b9045a6104ca648 has version 26.0.0, which satisfies requirement scipion-em-xmipp==26.0.0 from https://files.pythonhosted.org/packages/04/c5/1b430c39044634fccdcc06d491953043bc19b1c0e3ff27fd492c45ce5e9f/scipion_em_xmipp-26.0.0.tar.gz
2025-11-17T13:14:47,406   Removed scipion-em-xmipp==26.0.0 from https://files.pythonhosted.org/packages/04/c5/1b430c39044634fccdcc06d491953043bc19b1c0e3ff27fd492c45ce5e9f/scipion_em_xmipp-26.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-r0spjmov'
2025-11-17T13:14:47,411 Created temporary directory: /tmp/pip-unpack-9h1x9r3g
2025-11-17T13:14:47,412 Building wheels for collected packages: scipion-em-xmipp
2025-11-17T13:14:47,416   Created temporary directory: /tmp/pip-wheel-5elugusd
2025-11-17T13:14:47,417   Destination directory: /tmp/pip-wheel-5elugusd
2025-11-17T13:14:47,419   Building wheel for scipion-em-xmipp (pyproject.toml): started
2025-11-17T13:14:47,421   Running command Building wheel for scipion-em-xmipp (pyproject.toml)
2025-11-17T13:14:47,963   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-17T13:14:47,963   `flat-layout` detected -- analysing .
2025-11-17T13:14:47,989   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess']
2025-11-17T13:14:47,994   /tmp/pip-build-env-r8d1x9oi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-17T13:14:47,995   !!

2025-11-17T13:14:47,996           ********************************************************************************
2025-11-17T13:14:47,997           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-17T13:14:47,998           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-17T13:14:47,998           or your builds will no longer be supported.

2025-11-17T13:14:48,000           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-17T13:14:48,001           ********************************************************************************

2025-11-17T13:14:48,002   !!
2025-11-17T13:14:48,002     corresp(dist, value, root_dir)
2025-11-17T13:14:48,075   running bdist_wheel
2025-11-17T13:14:48,095   running build
2025-11-17T13:14:48,096   running build_py
2025-11-17T13:14:48,103   creating build/lib/xmipp3
2025-11-17T13:14:48,105   copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3
2025-11-17T13:14:48,108   copying xmipp3/bibtex.py -> build/lib/xmipp3
2025-11-17T13:14:48,111   copying xmipp3/programs.py -> build/lib/xmipp3
2025-11-17T13:14:48,113   copying xmipp3/base.py -> build/lib/xmipp3
2025-11-17T13:14:48,116   copying xmipp3/__init__.py -> build/lib/xmipp3
2025-11-17T13:14:48,118   copying xmipp3/constants.py -> build/lib/xmipp3
2025-11-17T13:14:48,120   copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3
2025-11-17T13:14:48,122   copying xmipp3/wizards.py -> build/lib/xmipp3
2025-11-17T13:14:48,125   copying xmipp3/logParser.py -> build/lib/xmipp3
2025-11-17T13:14:48,127   copying xmipp3/utils.py -> build/lib/xmipp3
2025-11-17T13:14:48,129   copying xmipp3/version.py -> build/lib/xmipp3
2025-11-17T13:14:48,132   creating build/lib/xmipp3/convert
2025-11-17T13:14:48,133   copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert
2025-11-17T13:14:48,135   copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert
2025-11-17T13:14:48,137   copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert
2025-11-17T13:14:48,139   copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert
2025-11-17T13:14:48,143   creating build/lib/xmipp3/legacy
2025-11-17T13:14:48,144   copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy
2025-11-17T13:14:48,147   creating build/lib/xmipp3/viewers
2025-11-17T13:14:48,148   copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,151   copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,153   copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,155   copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,158   copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,160   copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,161   copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,163   copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,166   copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,169   copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,171   copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,173   copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,176   copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,178   copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,180   copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,183   copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,185   copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,188   copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,190   copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,192   copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,194   copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,197   copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,199   copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,201   copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,203   copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,206   copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,209   copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,211   copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,214   copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,216   copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,218   copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,220   copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,222   copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,225   copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,227   copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,230   copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,232   copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,235   copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,237   copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,239   copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers
2025-11-17T13:14:48,244   creating build/lib/xmipp3/protocols
2025-11-17T13:14:48,245   copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,248   copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,252   copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,254   copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,257   copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,259   copying xmipp3/protocols/protocol_classify_pca_streaming.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,262   copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,264   copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,267   copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,270   copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,272   copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,275   copying xmipp3/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,277   copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,280   copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,283   copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,285   copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,288   copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,290   copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,293   copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,295   copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,298   copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,301   copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,304   copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,306   copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,309   copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,312   copying xmipp3/protocols/protocol_deep_center.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,314   copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,318   copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,321   copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,324   copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,327   copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,332   copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,337   copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,342   copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,345   copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,348   copying xmipp3/protocols/protocol_classify_pca.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,351   copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,353   copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,356   copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,359   copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,362   copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,365   copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,368   copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,371   copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,374   copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,378   copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,380   copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,383   copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,385   copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,388   copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,391   copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,394   copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,397   copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,399   copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,402   copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,405   copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,407   copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,410   copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,413   copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,418   copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,421   copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,423   copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,426   copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,429   copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,432   copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,434   copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,437   copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,440   copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,442   copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,444   copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,447   copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,449   copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,452   copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,455   copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,457   copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,459   copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,462   copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,465   copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,467   copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,469   copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,472   copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,474   copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,477   copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,479   copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,482   copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,484   copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,486   copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,489   copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,492   copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,494   copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,497   copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,499   copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,502   copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,504   copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,506   copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,509   copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,511   copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,514   copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,516   copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols
2025-11-17T13:14:48,520   creating build/lib/xmipp3/tests
2025-11-17T13:14:48,521   copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,523   copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,526   copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,529   copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,532   copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,534   copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,539   copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,545   copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,551   copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,557   copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,561   copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,568   copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,570   copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,573   copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,582   copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,587   copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,594   copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,602   copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,609   copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,612   copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,616   copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,618   copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,620   copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,622   copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,625   copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,627   copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,630   copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,634   copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,636   copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,638   copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,642   copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,644   copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,647   copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,649   copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,651   copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests
2025-11-17T13:14:48,654   creating build/lib/xmipp3/legacy/viewers
2025-11-17T13:14:48,655   copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T13:14:48,658   copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T13:14:48,660   copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T13:14:48,662   copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T13:14:48,664   copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T13:14:48,666   copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T13:14:48,670   creating build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,671   copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,675   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,678   copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,681   copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,684   copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,687   copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,689   copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,692   copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,694   copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,696   copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,699   copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,703   copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,705   copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,707   copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,711   copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,713   copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,715   copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,717   copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,720   copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,723   copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,726   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,729   copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,731   copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,734   copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,738   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,741   copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,743   copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T13:14:48,746   creating build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,747   copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,750   copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,752   copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,754   copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,756   copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,758   copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,760   copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,762   copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,765   copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,767   copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,769   copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests
2025-11-17T13:14:48,772   creating build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:48,773   copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:48,776   copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:48,779   copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:48,781   copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:48,783   copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:48,787   creating build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,788   copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,791   copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,793   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,796   copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,799   copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,801   copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,804   copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,806   copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,809   copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,812   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,814   copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,817   copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:48,819   running egg_info
2025-11-17T13:14:48,831   writing scipion_em_xmipp.egg-info/PKG-INFO
2025-11-17T13:14:48,833   writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-17T13:14:48,835   writing entry points to scipion_em_xmipp.egg-info/entry_points.txt
2025-11-17T13:14:48,836   writing requirements to scipion_em_xmipp.egg-info/requires.txt
2025-11-17T13:14:48,837   writing top-level names to scipion_em_xmipp.egg-info/top_level.txt
2025-11-17T13:14:48,865   reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T13:14:48,879   reading manifest template 'MANIFEST.in'
2025-11-17T13:14:48,882   adding license file 'LICENSE'
2025-11-17T13:14:48,895   writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T13:14:48,906   copying xmipp3/protocols.conf -> build/lib/xmipp3
2025-11-17T13:14:48,908   copying xmipp3/xmipp_logo.png -> build/lib/xmipp3
2025-11-17T13:14:48,912   copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3
2025-11-17T13:14:48,963   installing to build/bdist.linux-armv7l/wheel
2025-11-17T13:14:48,964   running install
2025-11-17T13:14:48,987   running install_lib
2025-11-17T13:14:48,994   creating build/bdist.linux-armv7l/wheel
2025-11-17T13:14:48,996   creating build/bdist.linux-armv7l/wheel/xmipp3
2025-11-17T13:14:48,998   copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,001   copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,004   copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,007   creating build/bdist.linux-armv7l/wheel/xmipp3/convert
2025-11-17T13:14:49,008   copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T13:14:49,011   copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T13:14:49,014   copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T13:14:49,016   copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T13:14:49,023   copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,049   copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,052   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy
2025-11-17T13:14:49,053   copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy
2025-11-17T13:14:49,055   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers
2025-11-17T13:14:49,056   copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T13:14:49,059   copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T13:14:49,061   copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T13:14:49,063   copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T13:14:49,065   copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T13:14:49,067   copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T13:14:49,071   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols
2025-11-17T13:14:49,072   copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,076   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,079   copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,081   copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,083   copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,086   copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,088   copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,091   copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,094   copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,096   copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,098   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,101   copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,103   copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,105   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,108   copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,109   copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,112   copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,115   copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,119   copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,122   copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,125   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,129   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,132   copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,135   copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,141   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,145   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,148   copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T13:14:49,152   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests
2025-11-17T13:14:49,154   copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,158   copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,160   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,163   copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,166   copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,168   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,171   copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,174   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,177   copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,179   copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,182   copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T13:14:49,185   copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,189   copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,193   creating build/bdist.linux-armv7l/wheel/xmipp3/viewers
2025-11-17T13:14:49,195   copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,198   copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,200   copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,203   copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,206   copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,208   copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,211   copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,213   copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,216   copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,218   copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,220   copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,223   copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,225   copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,227   copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,230   copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,232   copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,235   copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,237   copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,239   copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,241   copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,243   copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,245   copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,248   copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,250   copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,252   copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,254   copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,257   copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,259   copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,262   copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,264   copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,266   copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,268   copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,270   copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,272   copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,275   copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,277   copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,280   copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,283   copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,285   copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,287   copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T13:14:49,291   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols
2025-11-17T13:14:49,292   copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,295   copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,306   copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,313   copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,316   copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,318   copying build/lib/xmipp3/protocols/protocol_classify_pca_streaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,322   copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,327   copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,333   copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,336   copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,339   copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,343   copying build/lib/xmipp3/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,347   copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,352   copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,355   copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,359   copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,361   copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,364   copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,366   copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,371   copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,374   copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,376   copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,379   copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,382   copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,384   copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,387   copying build/lib/xmipp3/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,389   copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,391   copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,395   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:49,396   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:49,398   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:49,624   copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:49,626   copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:49,628   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T13:14:49,631   copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,634   copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,636   copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,638   copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,640   copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,643   copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,645   copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,648   copying build/lib/xmipp3/protocols/protocol_classify_pca.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,650   copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,653   copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,655   copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,658   copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,660   copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,663   copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,665   copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,668   copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,671   copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,673   copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,676   copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,678   copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,680   copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,683   copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,685   copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,688   copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,690   copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,692   copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,695   copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,697   copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,700   copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,702   copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,705   copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,709   copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,712   copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,714   copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,717   copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,719   copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,721   copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,724   copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,727   copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,730   copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,732   copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,735   copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,737   copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,740   copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,743   copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,745   copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,748   copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,751   copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,753   copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,756   copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,759   copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,761   copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,764   copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,766   copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,770   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,771   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,774   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,776   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,779   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,782   copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,784   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,786   copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,789   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,792   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,794   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,796   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,800   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T13:14:49,802   copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,804   copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,807   copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,809   copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,812   copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,814   copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,817   copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,820   copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,823   copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,825   copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,828   copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,830   copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,833   copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,835   copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,838   copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,840   copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,843   copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T13:14:49,846   copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,848   copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,850   copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,854   creating build/bdist.linux-armv7l/wheel/xmipp3/tests
2025-11-17T13:14:49,855   copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,857   copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,860   copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,863   copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,866   copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,868   copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,871   copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,874   copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,876   copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,878   copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,881   copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,885   copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,888   copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,890   copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,894   copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,896   copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,898   copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,901   copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,903   copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,906   copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,908   copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,910   copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,913   copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,914   copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,917   copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,920   copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,923   copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,928   copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,931   copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,934   copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,937   copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,940   copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,943   copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,946   copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,948   copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T13:14:49,951   copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,954   copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,957   copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,962   copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T13:14:49,965   running install_egg_info
2025-11-17T13:14:49,974   Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-26.0.0-py3.11.egg-info
2025-11-17T13:14:49,992   running install_scripts
2025-11-17T13:14:50,010   creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-26.0.0.dist-info/WHEEL
2025-11-17T13:14:50,014   creating '/tmp/pip-wheel-5elugusd/.tmp-jejiezbm/scipion_em_xmipp-26.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-11-17T13:14:50,023   adding 'scipion_em_xmipp-26.0.0.dist-info/licenses/LICENSE'
2025-11-17T13:14:50,027   adding 'xmipp3/__init__.py'
2025-11-17T13:14:50,030   adding 'xmipp3/base.py'
2025-11-17T13:14:50,034   adding 'xmipp3/bibtex.py'
2025-11-17T13:14:50,035   adding 'xmipp3/checkProtocolsConf.py'
2025-11-17T13:14:50,037   adding 'xmipp3/constants.py'
2025-11-17T13:14:50,038   adding 'xmipp3/logParser.py'
2025-11-17T13:14:50,041   adding 'xmipp3/programs.py'
2025-11-17T13:14:50,043   adding 'xmipp3/protocols.conf'
2025-11-17T13:14:50,045   adding 'xmipp3/protocolsCollectInfo.py'
2025-11-17T13:14:50,046   adding 'xmipp3/utils.py'
2025-11-17T13:14:50,048   adding 'xmipp3/version.py'
2025-11-17T13:14:50,050   adding 'xmipp3/wizards.py'
2025-11-17T13:14:50,062   adding 'xmipp3/xmipp_logo.png'
2025-11-17T13:14:50,154   adding 'xmipp3/xmipp_logo_devel.png'
2025-11-17T13:14:50,161   adding 'xmipp3/convert/__init__.py'
2025-11-17T13:14:50,168   adding 'xmipp3/convert/convert.py'
2025-11-17T13:14:50,171   adding 'xmipp3/convert/dataimport.py'
2025-11-17T13:14:50,172   adding 'xmipp3/convert/io_coordinates.py'
2025-11-17T13:14:50,174   adding 'xmipp3/legacy/__init__.py'
2025-11-17T13:14:50,176   adding 'xmipp3/legacy/protocols/__init__.py'
2025-11-17T13:14:50,177   adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py'
2025-11-17T13:14:50,179   adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py'
2025-11-17T13:14:50,183   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py'
2025-11-17T13:14:50,188   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py'
2025-11-17T13:14:50,191   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py'
2025-11-17T13:14:50,193   adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py'
2025-11-17T13:14:50,197   adding 'xmipp3/legacy/protocols/protocol_deep_align.py'
2025-11-17T13:14:50,199   adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py'
2025-11-17T13:14:50,202   adding 'xmipp3/legacy/protocols/protocol_enrich.py'
2025-11-17T13:14:50,205   adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py'
2025-11-17T13:14:50,206   adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py'
2025-11-17T13:14:50,208   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py'
2025-11-17T13:14:50,209   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py'
2025-11-17T13:14:50,212   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py'
2025-11-17T13:14:50,215   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py'
2025-11-17T13:14:50,219   adding 'xmipp3/legacy/protocols/protocol_mltomo.py'
2025-11-17T13:14:50,221   adding 'xmipp3/legacy/protocols/protocol_movie_average.py'
2025-11-17T13:14:50,223   adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py'
2025-11-17T13:14:50,225   adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py'
2025-11-17T13:14:50,230   adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py'
2025-11-17T13:14:50,232   adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py'
2025-11-17T13:14:50,235   adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py'
2025-11-17T13:14:50,238   adding 'xmipp3/legacy/protocols/protocol_solid_angles.py'
2025-11-17T13:14:50,240   adding 'xmipp3/legacy/protocols/protocol_split_volume.py'
2025-11-17T13:14:50,244   adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py'
2025-11-17T13:14:50,247   adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py'
2025-11-17T13:14:50,249   adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py'
2025-11-17T13:14:50,250   adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py'
2025-11-17T13:14:50,252   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py'
2025-11-17T13:14:50,254   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py'
2025-11-17T13:14:50,255   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py'
2025-11-17T13:14:50,256   adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py'
2025-11-17T13:14:50,258   adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py'
2025-11-17T13:14:50,259   adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py'
2025-11-17T13:14:50,261   adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py'
2025-11-17T13:14:50,267   adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py'
2025-11-17T13:14:50,269   adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py'
2025-11-17T13:14:50,271   adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py'
2025-11-17T13:14:50,273   adding 'xmipp3/legacy/viewers/viewer_deep_align.py'
2025-11-17T13:14:50,275   adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py'
2025-11-17T13:14:50,277   adding 'xmipp3/legacy/viewers/viewer_mltomo.py'
2025-11-17T13:14:50,278   adding 'xmipp3/legacy/viewers/viewer_solid_angles.py'
2025-11-17T13:14:50,280   adding 'xmipp3/legacy/viewers/viewer_split_volume.py'
2025-11-17T13:14:50,284   adding 'xmipp3/protocols/__init__.py'
2025-11-17T13:14:50,287   adding 'xmipp3/protocols/protocol_align_volume.py'
2025-11-17T13:14:50,289   adding 'xmipp3/protocols/protocol_align_volume_and_particles.py'
2025-11-17T13:14:50,291   adding 'xmipp3/protocols/protocol_analyze_local_ctf.py'
2025-11-17T13:14:50,294   adding 'xmipp3/protocols/protocol_angular_graph_consistency.py'
2025-11-17T13:14:50,296   adding 'xmipp3/protocols/protocol_apply_alignment.py'
2025-11-17T13:14:50,298   adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py'
2025-11-17T13:14:50,299   adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py'
2025-11-17T13:14:50,301   adding 'xmipp3/protocols/protocol_apply_zernike3d.py'
2025-11-17T13:14:50,303   adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py'
2025-11-17T13:14:50,305   adding 'xmipp3/protocols/protocol_break_symmetry.py'
2025-11-17T13:14:50,306   adding 'xmipp3/protocols/protocol_center_particles.py'
2025-11-17T13:14:50,310   adding 'xmipp3/protocols/protocol_cl2d.py'
2025-11-17T13:14:50,311   adding 'xmipp3/protocols/protocol_cl2d_align.py'
2025-11-17T13:14:50,313   adding 'xmipp3/protocols/protocol_cl2d_clustering.py'
2025-11-17T13:14:50,316   adding 'xmipp3/protocols/protocol_classes_2d_mapping.py'
2025-11-17T13:14:50,319   adding 'xmipp3/protocols/protocol_classify_pca.py'
2025-11-17T13:14:50,322   adding 'xmipp3/protocols/protocol_classify_pca_streaming.py'
2025-11-17T13:14:50,324   adding 'xmipp3/protocols/protocol_compare_angles.py'
2025-11-17T13:14:50,328   adding 'xmipp3/protocols/protocol_compare_reprojections.py'
2025-11-17T13:14:50,330   adding 'xmipp3/protocols/protocol_compute_likelihood.py'
2025-11-17T13:14:50,334   adding 'xmipp3/protocols/protocol_consensus_classes.py'
2025-11-17T13:14:50,336   adding 'xmipp3/protocols/protocol_consensus_local_ctf.py'
2025-11-17T13:14:50,338   adding 'xmipp3/protocols/protocol_convert_pdb.py'
2025-11-17T13:14:50,340   adding 'xmipp3/protocols/protocol_core_analysis.py'
2025-11-17T13:14:50,342   adding 'xmipp3/protocols/protocol_create_gallery.py'
2025-11-17T13:14:50,346   adding 'xmipp3/protocols/protocol_ctf_consensus.py'
2025-11-17T13:14:50,348   adding 'xmipp3/protocols/protocol_ctf_correct_phase.py'
2025-11-17T13:14:50,350   adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py'
2025-11-17T13:14:50,352   adding 'xmipp3/protocols/protocol_ctf_defocus_group.py'
2025-11-17T13:14:50,355   adding 'xmipp3/protocols/protocol_ctf_micrographs.py'
2025-11-17T13:14:50,356   adding 'xmipp3/protocols/protocol_deep_center.py'
2025-11-17T13:14:50,358   adding 'xmipp3/protocols/protocol_deep_center_predict.py'
2025-11-17T13:14:50,360   adding 'xmipp3/protocols/protocol_deep_hand.py'
2025-11-17T13:14:50,363   adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py'
2025-11-17T13:14:50,365   adding 'xmipp3/protocols/protocol_denoise_particles.py'
2025-11-17T13:14:50,368   adding 'xmipp3/protocols/protocol_eliminate_empty_images.py'
2025-11-17T13:14:50,370   adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py'
2025-11-17T13:14:50,373   adding 'xmipp3/protocols/protocol_extract_particles.py'
2025-11-17T13:14:50,377   adding 'xmipp3/protocols/protocol_extract_particles_pairs.py'
2025-11-17T13:14:50,380   adding 'xmipp3/protocols/protocol_flexalign.py'
2025-11-17T13:14:50,382   adding 'xmipp3/protocols/protocol_generate_reprojections.py'
2025-11-17T13:14:50,384   adding 'xmipp3/protocols/protocol_helical_parameters.py'
2025-11-17T13:14:50,386   adding 'xmipp3/protocols/protocol_kerdensom.py'
2025-11-17T13:14:50,388   adding 'xmipp3/protocols/protocol_local_ctf.py'
2025-11-17T13:14:50,390   adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py'
2025-11-17T13:14:50,393   adding 'xmipp3/protocols/protocol_ml2d.py'
2025-11-17T13:14:50,397   adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py'
2025-11-17T13:14:50,400   adding 'xmipp3/protocols/protocol_movie_dose_analysis.py'
2025-11-17T13:14:50,403   adding 'xmipp3/protocols/protocol_movie_gain.py'
2025-11-17T13:14:50,406   adding 'xmipp3/protocols/protocol_movie_max_shift.py'
2025-11-17T13:14:50,408   adding 'xmipp3/protocols/protocol_movie_split_frames.py'
2025-11-17T13:14:50,410   adding 'xmipp3/protocols/protocol_multiple_fscs.py'
2025-11-17T13:14:50,413   adding 'xmipp3/protocols/protocol_multireference_alignability.py'
2025-11-17T13:14:50,415   adding 'xmipp3/protocols/protocol_normalize_strain.py'
2025-11-17T13:14:50,417   adding 'xmipp3/protocols/protocol_particle_pick.py'
2025-11-17T13:14:50,419   adding 'xmipp3/protocols/protocol_particle_pick_automatic.py'
2025-11-17T13:14:50,422   adding 'xmipp3/protocols/protocol_particle_pick_consensus.py'
2025-11-17T13:14:50,424   adding 'xmipp3/protocols/protocol_particle_pick_pairs.py'
2025-11-17T13:14:50,425   adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py'
2025-11-17T13:14:50,426   adding 'xmipp3/protocols/protocol_phantom_create.py'
2025-11-17T13:14:50,428   adding 'xmipp3/protocols/protocol_pick_noise.py'
2025-11-17T13:14:50,430   adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py'
2025-11-17T13:14:50,433   adding 'xmipp3/protocols/protocol_preprocess_micrographs.py'
2025-11-17T13:14:50,435   adding 'xmipp3/protocols/protocol_random_conical_tilt.py'
2025-11-17T13:14:50,439   adding 'xmipp3/protocols/protocol_ransac.py'
2025-11-17T13:14:50,441   adding 'xmipp3/protocols/protocol_reconstruct_fourier.py'
2025-11-17T13:14:50,451   adding 'xmipp3/protocols/protocol_reconstruct_highres.py'
2025-11-17T13:14:50,454   adding 'xmipp3/protocols/protocol_reconstruct_significant.py'
2025-11-17T13:14:50,458   adding 'xmipp3/protocols/protocol_reconstruct_swarm.py'
2025-11-17T13:14:50,460   adding 'xmipp3/protocols/protocol_resolution3d.py'
2025-11-17T13:14:50,461   adding 'xmipp3/protocols/protocol_resolution_bfactor.py'
2025-11-17T13:14:50,464   adding 'xmipp3/protocols/protocol_resolution_deepres.py'
2025-11-17T13:14:50,465   adding 'xmipp3/protocols/protocol_resolution_directional.py'
2025-11-17T13:14:50,467   adding 'xmipp3/protocols/protocol_resolution_fso.py'
2025-11-17T13:14:50,469   adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py'
2025-11-17T13:14:50,471   adding 'xmipp3/protocols/protocol_rotate_volume.py'
2025-11-17T13:14:50,473   adding 'xmipp3/protocols/protocol_rotational_symmetry.py'
2025-11-17T13:14:50,482   adding 'xmipp3/protocols/protocol_screen_deepConsensus.py'
2025-11-17T13:14:50,485   adding 'xmipp3/protocols/protocol_screen_particles.py'
2025-11-17T13:14:50,487   adding 'xmipp3/protocols/protocol_shift_particles.py'
2025-11-17T13:14:50,489   adding 'xmipp3/protocols/protocol_shift_volume.py'
2025-11-17T13:14:50,490   adding 'xmipp3/protocols/protocol_simulate_ctf.py'
2025-11-17T13:14:50,492   adding 'xmipp3/protocols/protocol_structure_map.py'
2025-11-17T13:14:50,495   adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py'
2025-11-17T13:14:50,497   adding 'xmipp3/protocols/protocol_subtract_projection.py'
2025-11-17T13:14:50,500   adding 'xmipp3/protocols/protocol_tilt_analysis.py'
2025-11-17T13:14:50,502   adding 'xmipp3/protocols/protocol_trigger_data.py'
2025-11-17T13:14:50,506   adding 'xmipp3/protocols/protocol_validate_fscq.py'
2025-11-17T13:14:50,508   adding 'xmipp3/protocols/protocol_validate_nontilt.py'
2025-11-17T13:14:50,511   adding 'xmipp3/protocols/protocol_validate_overfitting.py'
2025-11-17T13:14:50,513   adding 'xmipp3/protocols/protocol_volume_adjust_sub.py'
2025-11-17T13:14:50,515   adding 'xmipp3/protocols/protocol_volume_consensus.py'
2025-11-17T13:14:50,517   adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py'
2025-11-17T13:14:50,518   adding 'xmipp3/protocols/protocol_volume_local_adjust.py'
2025-11-17T13:14:50,521   adding 'xmipp3/protocols/protocol_volume_local_sharpening.py'
2025-11-17T13:14:50,523   adding 'xmipp3/protocols/protocol_volume_strain.py'
2025-11-17T13:14:50,524   adding 'xmipp3/protocols/protocol_write_testC.py'
2025-11-17T13:14:50,526   adding 'xmipp3/protocols/protocol_write_testP.py'
2025-11-17T13:14:50,528   adding 'xmipp3/protocols/protocol_preprocess/__init__.py'
2025-11-17T13:14:50,530   adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py'
2025-11-17T13:14:50,532   adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py'
2025-11-17T13:14:50,533   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py'
2025-11-17T13:14:50,536   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py'
2025-11-17T13:14:50,539   adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py'
2025-11-17T13:14:50,542   adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py'
2025-11-17T13:14:50,544   adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py'
2025-11-17T13:14:50,546   adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py'
2025-11-17T13:14:50,548   adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py'
2025-11-17T13:14:50,552   adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py'
2025-11-17T13:14:50,553   adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py'
2025-11-17T13:14:50,555   adding 'xmipp3/protocols/protocol_projmatch/__init__.py'
2025-11-17T13:14:50,559   adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py'
2025-11-17T13:14:50,561   adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py'
2025-11-17T13:14:50,565   adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py'
2025-11-17T13:14:50,568   adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py'
2025-11-17T13:14:50,570   adding 'xmipp3/tests/__init__.py'
2025-11-17T13:14:50,574   adding 'xmipp3/tests/test_convert_xmipp.py'
2025-11-17T13:14:50,576   adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py'
2025-11-17T13:14:50,577   adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py'
2025-11-17T13:14:50,579   adding 'xmipp3/tests/test_protocol_compare_angles.py'
2025-11-17T13:14:50,580   adding 'xmipp3/tests/test_protocol_consensus_classes3D.py'
2025-11-17T13:14:50,582   adding 'xmipp3/tests/test_protocol_ctf_consensus.py'
2025-11-17T13:14:50,585   adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py'
2025-11-17T13:14:50,587   adding 'xmipp3/tests/test_protocol_likelihood.py'
2025-11-17T13:14:50,588   adding 'xmipp3/tests/test_protocol_monodir.py'
2025-11-17T13:14:50,589   adding 'xmipp3/tests/test_protocol_multiple_fsc.py'
2025-11-17T13:14:50,591   adding 'xmipp3/tests/test_protocol_multireference_alignability.py'
2025-11-17T13:14:50,592   adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py'
2025-11-17T13:14:50,594   adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py'
2025-11-17T13:14:50,596   adding 'xmipp3/tests/test_protocol_simulate_ctf.py'
2025-11-17T13:14:50,597   adding 'xmipp3/tests/test_protocol_split_frames.py'
2025-11-17T13:14:50,598   adding 'xmipp3/tests/test_protocol_validate_fscq.py'
2025-11-17T13:14:50,600   adding 'xmipp3/tests/test_protocol_validate_overfitting.py'
2025-11-17T13:14:50,601   adding 'xmipp3/tests/test_protocols_add_noise.py'
2025-11-17T13:14:50,603   adding 'xmipp3/tests/test_protocols_continuousflex.py'
2025-11-17T13:14:50,604   adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py'
2025-11-17T13:14:50,606   adding 'xmipp3/tests/test_protocols_deepcenter_predict.py'
2025-11-17T13:14:50,607   adding 'xmipp3/tests/test_protocols_deepres.py'
2025-11-17T13:14:50,609   adding 'xmipp3/tests/test_protocols_fso.py'
2025-11-17T13:14:50,610   adding 'xmipp3/tests/test_protocols_highres.py'
2025-11-17T13:14:50,612   adding 'xmipp3/tests/test_protocols_local_defocus.py'
2025-11-17T13:14:50,613   adding 'xmipp3/tests/test_protocols_localdeblur.py'
2025-11-17T13:14:50,615   adding 'xmipp3/tests/test_protocols_monores.py'
2025-11-17T13:14:50,616   adding 'xmipp3/tests/test_protocols_realignment_classes.py'
2025-11-17T13:14:50,623   adding 'xmipp3/tests/test_protocols_xmipp_2d.py'
2025-11-17T13:14:50,632   adding 'xmipp3/tests/test_protocols_xmipp_3d.py'
2025-11-17T13:14:50,637   adding 'xmipp3/tests/test_protocols_xmipp_mics.py'
2025-11-17T13:14:50,639   adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py'
2025-11-17T13:14:50,642   adding 'xmipp3/tests/test_protocols_xmipp_movies.py'
2025-11-17T13:14:50,644   adding 'xmipp3/tests/test_protocols_zernike3d.py'
2025-11-17T13:14:50,647   adding 'xmipp3/viewers/__init__.py'
2025-11-17T13:14:50,648   adding 'xmipp3/viewers/plotter.py'
2025-11-17T13:14:50,650   adding 'xmipp3/viewers/viewer.py'
2025-11-17T13:14:50,652   adding 'xmipp3/viewers/viewer_LL_matrix.py'
2025-11-17T13:14:50,654   adding 'xmipp3/viewers/viewer_analyze_local_ctf.py'
2025-11-17T13:14:50,655   adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py'
2025-11-17T13:14:50,657   adding 'xmipp3/viewers/viewer_cl2d.py'
2025-11-17T13:14:50,658   adding 'xmipp3/viewers/viewer_cl2d_clustering.py'
2025-11-17T13:14:50,660   adding 'xmipp3/viewers/viewer_consensus_classes.py'
2025-11-17T13:14:50,661   adding 'xmipp3/viewers/viewer_ctf_consensus.py'
2025-11-17T13:14:50,663   adding 'xmipp3/viewers/viewer_deepEMHancer.py'
2025-11-17T13:14:50,664   adding 'xmipp3/viewers/viewer_deep_consensus.py'
2025-11-17T13:14:50,666   adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py'
2025-11-17T13:14:50,667   adding 'xmipp3/viewers/viewer_dose_analysis.py'
2025-11-17T13:14:50,669   adding 'xmipp3/viewers/viewer_eliminate_empty_images.py'
2025-11-17T13:14:50,671   adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py'
2025-11-17T13:14:50,672   adding 'xmipp3/viewers/viewer_local_sharpening.py'
2025-11-17T13:14:50,674   adding 'xmipp3/viewers/viewer_ml2d.py'
2025-11-17T13:14:50,676   adding 'xmipp3/viewers/viewer_movie_alignment.py'
2025-11-17T13:14:50,677   adding 'xmipp3/viewers/viewer_normalize_strain.py'
2025-11-17T13:14:50,679   adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py'
2025-11-17T13:14:50,683   adding 'xmipp3/viewers/viewer_projmatch.py'
2025-11-17T13:14:50,684   adding 'xmipp3/viewers/viewer_ransac.py'
2025-11-17T13:14:50,686   adding 'xmipp3/viewers/viewer_reconstruct_highres.py'
2025-11-17T13:14:50,688   adding 'xmipp3/viewers/viewer_resolution3d.py'
2025-11-17T13:14:50,690   adding 'xmipp3/viewers/viewer_resolution_bfactor.py'
2025-11-17T13:14:50,692   adding 'xmipp3/viewers/viewer_resolution_deepres.py'
2025-11-17T13:14:50,695   adding 'xmipp3/viewers/viewer_resolution_directional.py'
2025-11-17T13:14:50,697   adding 'xmipp3/viewers/viewer_resolution_fso.py'
2025-11-17T13:14:50,699   adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py'
2025-11-17T13:14:50,702   adding 'xmipp3/viewers/viewer_structure_map.py'
2025-11-17T13:14:50,703   adding 'xmipp3/viewers/viewer_subtract_projection.py'
2025-11-17T13:14:50,705   adding 'xmipp3/viewers/viewer_swarm.py'
2025-11-17T13:14:50,707   adding 'xmipp3/viewers/viewer_validate_fscq.py'
2025-11-17T13:14:50,708   adding 'xmipp3/viewers/viewer_validate_nontilt.py'
2025-11-17T13:14:50,710   adding 'xmipp3/viewers/viewer_validate_overfitting.py'
2025-11-17T13:14:50,711   adding 'xmipp3/viewers/viewer_volume_consensus.py'
2025-11-17T13:14:50,713   adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py'
2025-11-17T13:14:50,714   adding 'xmipp3/viewers/viewer_volume_strain.py'
2025-11-17T13:14:50,716   adding 'xmipp3/viewers/viewer_volume_subtraction.py'
2025-11-17T13:14:50,717   adding 'scipion_em_xmipp-26.0.0.dist-info/METADATA'
2025-11-17T13:14:50,718   adding 'scipion_em_xmipp-26.0.0.dist-info/WHEEL'
2025-11-17T13:14:50,719   adding 'scipion_em_xmipp-26.0.0.dist-info/entry_points.txt'
2025-11-17T13:14:50,720   adding 'scipion_em_xmipp-26.0.0.dist-info/top_level.txt'
2025-11-17T13:14:50,724   adding 'scipion_em_xmipp-26.0.0.dist-info/RECORD'
2025-11-17T13:14:50,747   removing build/bdist.linux-armv7l/wheel
2025-11-17T13:14:50,900   Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done'
2025-11-17T13:14:50,940   Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-26.0.0-py3-none-any.whl size=1806349 sha256=b4e9e8f91fa83d476d1d9620396f5ab5f28708c500fcb28834da13f810c5cdd1
2025-11-17T13:14:50,941   Stored in directory: /tmp/pip-ephem-wheel-cache-6tt0ubx4/wheels/52/65/ff/15e0e7f8a299ca4387438b9ae7975a207cce31d4653ace4f2f
2025-11-17T13:14:50,962 Successfully built scipion-em-xmipp
2025-11-17T13:14:51,016 Removed build tracker: '/tmp/pip-build-tracker-r0spjmov'