2025-11-17T14:26:56,069 Created temporary directory: /tmp/pip-ephem-wheel-cache-k5fkjzi3
2025-11-17T14:26:56,071 Created temporary directory: /tmp/pip-build-tracker-m30veshf
2025-11-17T14:26:56,071 Initialized build tracking at /tmp/pip-build-tracker-m30veshf
2025-11-17T14:26:56,072 Created build tracker: /tmp/pip-build-tracker-m30veshf
2025-11-17T14:26:56,072 Entered build tracker: /tmp/pip-build-tracker-m30veshf
2025-11-17T14:26:56,073 Created temporary directory: /tmp/pip-wheel-cm20ap_j
2025-11-17T14:26:56,076 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-17T14:26:56,079 Created temporary directory: /tmp/pip-ephem-wheel-cache-c9vv3l3y
2025-11-17T14:26:56,100 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-17T14:26:56,104 2 location(s) to search for versions of scipion-em-xmipp:
2025-11-17T14:26:56,104 * https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,104 * https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,105 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,106 Getting page https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,107 Found index url https://pypi.org/simple
2025-11-17T14:26:56,321 Fetched page https://pypi.org/simple/scipion-em-xmipp/ as application/vnd.pypi.simple.v1+json
2025-11-17T14:26:56,335   Found link https://files.pythonhosted.org/packages/ac/e8/0b29e46431aa1223befa2a698d198863c12304274306b16832cfd454e3f9/scipion-em-xmipp-1.0.0a1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0a1
2025-11-17T14:26:56,336   Found link https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0b1
2025-11-17T14:26:56,337   Found link https://files.pythonhosted.org/packages/27/04/5659119b2d4622b274555e6175dec47a4dca6dc7eba56bc469bbadac71a3/scipion-em-xmipp-19.3b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3b0
2025-11-17T14:26:56,338   Found link https://files.pythonhosted.org/packages/3a/d9/3171cd2d43aa40510db86a86ed766d314f549f4583119548e538ae97444f/scipion-em-xmipp-19.3.1b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.1b0
2025-11-17T14:26:56,338   Found link https://files.pythonhosted.org/packages/50/7c/87e8f5031f14f5daf04b3a77e5018028c4d47325635d683428fbe478e719/scipion-em-xmipp-19.3.2b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.2b0
2025-11-17T14:26:56,339   Found link https://files.pythonhosted.org/packages/02/10/513a51ad147a24e33797b5114b67e98038390b70cc17df25a7191d468134/scipion-em-xmipp-19.3.3b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b0
2025-11-17T14:26:56,340   Found link https://files.pythonhosted.org/packages/8f/92/d59d3d7361e247fb3d74ffe5920f7353b38a3a051f91d6b9bf6357581fe9/scipion-em-xmipp-19.3.3b2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b2
2025-11-17T14:26:56,341   Found link https://files.pythonhosted.org/packages/30/cc/45f5761a8c4f656881dbe55c351a268bcbdfd9ca9d159900755848ecd657/scipion-em-xmipp-19.3.3b3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b3
2025-11-17T14:26:56,341   Found link https://files.pythonhosted.org/packages/13/53/fd16ab9eff7bc97c50fcab52ecff83523239910c2da6717d84def4678bc5/scipion-em-xmipp-19.3.3b4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b4
2025-11-17T14:26:56,342   Found link https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b5
2025-11-17T14:26:56,343   Found link https://files.pythonhosted.org/packages/28/82/40c0b017805993ad642717a1b7e835ff4124a29c5fdf5d825103c2fe415f/scipion-em-xmipp-19.3.3b6.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b6
2025-11-17T14:26:56,344   Found link https://files.pythonhosted.org/packages/23/da/189566d17133de5827f7850766cde4176f6845b63f0b5c485b2306753307/scipion-em-xmipp-19.3.3b7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b7
2025-11-17T14:26:56,344   Found link https://files.pythonhosted.org/packages/a7/84/175f6dbf280848bd4b1053321385381a2930fa37116241645254068f01b2/scipion-em-xmipp-19.3.3b8.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b8
2025-11-17T14:26:56,345   Found link https://files.pythonhosted.org/packages/b8/12/cd3ddb5a1d8aa235c8791e2b230b121477d3bc5ee63792d8d7e66738d835/scipion-em-xmipp-19.4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4
2025-11-17T14:26:56,346   Found link https://files.pythonhosted.org/packages/c0/5b/4ecca6d5dbc925ec19ce98bd3e76b2459be8efd280241cab17f57b7b8bf1/scipion-em-xmipp-19.4.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.1
2025-11-17T14:26:56,346   Found link https://files.pythonhosted.org/packages/78/a5/013710e0192dc4d8312b06b17c393d9ae01ee6370fac5c0374ab0f99d540/scipion-em-xmipp-19.4.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.2
2025-11-17T14:26:56,347   Found link https://files.pythonhosted.org/packages/8a/e5/2a7960924fff02c71b3af6308001de11cf4d754db3355562692aa7fc4186/scipion-em-xmipp-19.4.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.3
2025-11-17T14:26:56,348   Found link https://files.pythonhosted.org/packages/52/ed/b56f4f2e007e7ca794764ed4afcac73e606572df741b4b7e5351d079d3a7/scipion-em-xmipp-20.7a0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a0
2025-11-17T14:26:56,348   Found link https://files.pythonhosted.org/packages/e9/91/2898f8c10bd384d539971596cb921f0b0a4f634aaac12f7f19a757cd678d/scipion-em-xmipp-20.7a1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a1
2025-11-17T14:26:56,349   Found link https://files.pythonhosted.org/packages/9f/39/174135aff5c22a469eaf698e5fd714c5459420de3e293f5277218afd09df/scipion-em-xmipp-20.7a2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a2
2025-11-17T14:26:56,350   Found link https://files.pythonhosted.org/packages/e7/b3/7f5ad38626efef9dd54836f2ee1348af78faf9d066f96f98fd84f027ff09/scipion-em-xmipp-20.7a3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a3
2025-11-17T14:26:56,351   Found link https://files.pythonhosted.org/packages/44/c0/d1503a132e26d05c8dcfed83e592a394e8c5ac803ac60850bd2213c2a993/scipion-em-xmipp-20.7a4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a4
2025-11-17T14:26:56,352   Found link https://files.pythonhosted.org/packages/7a/73/c2a026a983021b3d0e91fef78139351a17cf991d00ef0e5c94207c4142fd/scipion-em-xmipp-20.7a5.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a5
2025-11-17T14:26:56,352   Found link https://files.pythonhosted.org/packages/bf/19/d8f24d55b90ec6a8f113f36c718cf18ae1e5f037244d6b3eea34d52f0698/scipion-em-xmipp-20.7a6.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a6
2025-11-17T14:26:56,353   Found link https://files.pythonhosted.org/packages/94/eb/3c90ecf9b9ed73081e47f1f7b89c69b9f27dc671cfbd9e5d8ddbe74e504a/scipion-em-xmipp-20.7a7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a7
2025-11-17T14:26:56,354   Found link https://files.pythonhosted.org/packages/9f/04/28714f70cf8f620fdaf8b7352646dc56167d6fd68fd7d1c2d018d6e14881/scipion-em-xmipp-20.7a8.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a8
2025-11-17T14:26:56,355   Found link https://files.pythonhosted.org/packages/b0/3b/adc47a380165d5ead9fb40a6ed2207b1ba535a61c584893eb2498abc9df4/scipion-em-xmipp-20.7a9.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a9
2025-11-17T14:26:56,355   Found link https://files.pythonhosted.org/packages/91/eb/d5eb411231b951e009d79e31b52fb1b33e7e45d5f9c2f61d30dc17d7243f/scipion-em-xmipp-20.7b1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7b1
2025-11-17T14:26:56,357   Found link https://files.pythonhosted.org/packages/d8/a1/47793f263b8c63001cf71784ef106a824a418992b86e107369b11831ac40/scipion-em-xmipp-20.7rc0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc0
2025-11-17T14:26:56,357   Found link https://files.pythonhosted.org/packages/8d/8b/9a1165d1cdd43775891cee272edd06ff863dbc5750b52698a5c679025b71/scipion-em-xmipp-20.7rc1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc1
2025-11-17T14:26:56,358   Found link https://files.pythonhosted.org/packages/fd/9e/356da427dc4ff0203f2ce772d1342b9157862c4ac8d7570ba999370ce5a6/scipion-em-xmipp-20.7rc2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc2
2025-11-17T14:26:56,358   Found link https://files.pythonhosted.org/packages/4b/91/7ab3cd278a2dd956697fed5360ec4bd7adc60bf09e9dfd5e81ad84138094/scipion-em-xmipp-20.7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7
2025-11-17T14:26:56,359   Found link https://files.pythonhosted.org/packages/9f/93/9d7fe8e98125a90c270231da6e953e9479571bba3178a2ce0aec2275e4e1/scipion-em-xmipp-20.7.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.1
2025-11-17T14:26:56,360   Found link https://files.pythonhosted.org/packages/f7/17/ef967680746c66261fd9194a975f3aa637ce669f1476d569c71cf00a668a/scipion-em-xmipp-20.7.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.2
2025-11-17T14:26:56,360   Found link https://files.pythonhosted.org/packages/cc/65/41cab65b454b1dbad052705a98f73713d3b194679fe775fe0e0b5162c870/scipion-em-xmipp-20.7.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.3
2025-11-17T14:26:56,361   Found link https://files.pythonhosted.org/packages/de/a7/8b5a5a1d098004909c0b3718b50e50e3fb807b8894c725196c432ddf743e/scipion-em-xmipp-20.7.4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.4
2025-11-17T14:26:56,362   Found link https://files.pythonhosted.org/packages/30/56/fb7770e78e0497916e99ae018b9ecfb8562c44573ae01b516b1f67111bee/scipion-em-xmipp-21.6.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 21.6.1
2025-11-17T14:26:56,362   Found link https://files.pythonhosted.org/packages/aa/05/fa0cf1c45ae8217b88b7b0b6beb2b1a6cde9a707f1d3e0041d480d369d16/scipion-em-xmipp-21.9.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 21.9.0
2025-11-17T14:26:56,363   Found link https://files.pythonhosted.org/packages/d1/c2/a9ce741e455c38d13caeb7afa5e7d789abc3e651145758154ba11e4b7ae2/scipion-em-xmipp-22.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.1.0
2025-11-17T14:26:56,364   Found link https://files.pythonhosted.org/packages/d9/58/d56a9d6ff442a61dda76b90468d96e88cc7f90d0bb5949e60a990ff0d222/scipion-em-xmipp-22.4.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.4.0
2025-11-17T14:26:56,364   Found link https://files.pythonhosted.org/packages/6b/f1/ba22bb0f99b140d9ed6719988feeea6655435732717a818c115dd7956336/scipion-em-xmipp-22.7.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.7.0
2025-11-17T14:26:56,365   Found link https://files.pythonhosted.org/packages/b5/40/30c9fa41a55b82a2f0ffacb492238cf31fa078c3460bc3af4e234168ef3a/scipion-em-xmipp-22.7.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.7.0.1
2025-11-17T14:26:56,366   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/05/89/04edc1c3a844b63c761bfe040d5a736b75790e666140d0cbb75026a73f99/scipion_em_xmipp-22.7.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,366   Found link https://files.pythonhosted.org/packages/28/3f/cae77a54756c2d6e5e1194e1d9fc1a3d9c4358c0d3fb91b810b01acac795/scipion-em-xmipp-22.11.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.0
2025-11-17T14:26:56,367   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/b6/d7/46df8c1d4a69c61fb855f39c16fe22b64aef127402689b1b9775d5fef8c5/scipion_em_xmipp-22.11.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,368   Found link https://files.pythonhosted.org/packages/44/de/28fda7563cbf52139e73144cf875accb364668c89f32fbba13823ac08cc6/scipion-em-xmipp-22.11.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.1
2025-11-17T14:26:56,369   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/fc/2e/58376602d91e508a32b6d296125b4710cdeaf1452870350a1e47e3c1eb0a/scipion_em_xmipp-22.11.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,369   Found link https://files.pythonhosted.org/packages/fa/2c/0e40ab89093227353ce28d4569016c050188a75b7c4fd319e14a6c9464bf/scipion-em-xmipp-22.11.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.2
2025-11-17T14:26:56,370   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/d0/93/33cd393b1b08753546dd9e03b3a717239d6ee2e72659b982816e68065d09/scipion_em_xmipp-22.11.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,370   Found link https://files.pythonhosted.org/packages/ff/01/69dbd2d65d7a36546cab3d73332094923714d78358083a5c128cd2cc5a95/scipion-em-xmipp-23.3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.0
2025-11-17T14:26:56,371   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/06/09/df9dae8a63e0bc118b3752d55eaa23a9488b73d4a7b0842b73022f66c12a/scipion_em_xmipp-23.3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,372   Found link https://files.pythonhosted.org/packages/12/12/c7f9bb4e4033fca462ba95d480f2b4d0a6bb5449e3c32ff7557204ae9e4a/scipion-em-xmipp-23.3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.1
2025-11-17T14:26:56,372   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/96/b5/29fc82e53cb44590b141f59582152a0b506c993f0788be4471684ec5f02c/scipion_em_xmipp-23.3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,373   Found link https://files.pythonhosted.org/packages/2e/c6/dc675f99b407685ae55c5677f65e6d75f554051916a1248b25a848fef915/scipion-em-xmipp-23.3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.2
2025-11-17T14:26:56,374   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/c6/e0/2b882b8a45cabdfbe7f14d3c88ebe3641319cbe83ef5e7551c7094e99664/scipion_em_xmipp-23.3.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,375   Found link https://files.pythonhosted.org/packages/90/5f/c90a6c5e3135c917a405eb1ca33eb1d964a7990d929b6c04d30088f25de8/scipion-em-xmipp-23.3.0.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.3
2025-11-17T14:26:56,376   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/3f/c9/f24bbd58c9813a58c2e3508de9e6ee57b1d77e9f3688efe637056c337bf9/scipion_em_xmipp-23.3.0.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,376   Found link https://files.pythonhosted.org/packages/88/80/e4c6257566147cd0f156d98966aec432f69a2e3eb811c4a7cb277a640fe0/scipion-em-xmipp-23.7.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.7.0.0
2025-11-17T14:26:56,377   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/14/f5/d567084d746df5ac85c40ed32598bf8e6d94ceda86b7f4d388912e2fd54f/scipion_em_xmipp-23.7.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,378   Found link https://files.pythonhosted.org/packages/30/d5/1bda8372a43956e91dae7a96e782b1011269097d638abae70825edca9f42/scipion-em-xmipp-23.11.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.11.0.0
2025-11-17T14:26:56,378   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/50/e9/da76f93acf09261cc2c6d201ac8d4fea6cfa183effbbf4353027fd9a523d/scipion_em_xmipp-23.11.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,379   Found link https://files.pythonhosted.org/packages/ee/16/77d7958eb37d59013b0797cef20a107f6cbcc5ca395a2baf2eeebdd0e871/scipion-em-xmipp-23.11.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.11.0.1
2025-11-17T14:26:56,380   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/3c/c8/ed4b6aadb9633b540b6e9346770f9f91720d2d29e235429498ab07df8d61/scipion_em_xmipp-23.11.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,380   Found link https://files.pythonhosted.org/packages/f7/31/a0154ef1de37fcd44f21df54dce1bcd0ce424343407d59bd13d88399ffdd/scipion-em-xmipp-24.6.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 24.6.0.0
2025-11-17T14:26:56,381   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/63/b2/5ca583d8073d12fa9f058fc6dc2b94b3c23a047e7a53c070f00d45a99e5d/scipion_em_xmipp-24.6.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,381   Found link https://files.pythonhosted.org/packages/8e/59/1b8f32e2023baa544de460d57507b0b5de40fdae1b93ea7d10bcb3506a9b/scipion-em-xmipp-24.12.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 24.12.2
2025-11-17T14:26:56,382   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/4c/5d/b29ccdf2fdf9494d9b00b8cfca920942f3b214d9b0c8d70132801662927f/scipion_em_xmipp-24.12.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,382   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/c1/bf/cc86765cd150ff54b602b134f896a19b64421cd47a15e0ceb66dbe1b09de/scipion_em_xmipp-25.6.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T14:26:56,383   Found link https://files.pythonhosted.org/packages/1e/05/167b0a1d8068aee3fbf4f8ffc35e5a1502b498e838be1740ef2021339fef/scipion_em_xmipp-25.6.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 25.6.0
2025-11-17T14:26:56,384   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/7a/b5/a22cb3670513caa0624ef548caa0554aea711949d4f38d6bbde3cdb8560b/scipion_em_xmipp-25.6.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T14:26:56,385   Found link https://files.pythonhosted.org/packages/c1/50/f384e19d33b6a6cf39ae16afa1bc890a66ad8c03100e89228518fad0002e/scipion_em_xmipp-25.6.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 25.6.1
2025-11-17T14:26:56,386   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/e5/98/8143dd6ccebf3ff2798a69e361c03a08a85ad63b2e7978e3d7314b63b5d4/scipion_em_xmipp-26.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T14:26:56,387   Found link https://files.pythonhosted.org/packages/04/c5/1b430c39044634fccdcc06d491953043bc19b1c0e3ff27fd492c45ce5e9f/scipion_em_xmipp-26.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.0
2025-11-17T14:26:56,388   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/de/67/938bbc9118052615cdc205c07f93495aa59478a84d6aedbf2d7517c86547/scipion_em_xmipp-26.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T14:26:56,389   Found link https://files.pythonhosted.org/packages/7b/92/3c6ab9e66f5527444a60372e642424c5132687b17db8e0d7cea81c0b859f/scipion_em_xmipp-26.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.1
2025-11-17T14:26:56,390 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,390 Getting page https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,392 Found index url https://www.piwheels.org/simple
2025-11-17T14:26:56,589 Fetched page https://www.piwheels.org/simple/scipion-em-xmipp/ as text/html
2025-11-17T14:26:56,595   Skipping link: No binaries permitted for scipion-em-xmipp: https://www.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-26.0.0-py3-none-any.whl#sha256=b4e9e8f91fa83d476d1d9620396f5ab5f28708c500fcb28834da13f810c5cdd1 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T14:26:56,596   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-25.6.1-py3-none-any.whl#sha256=e9e0354c63ae8258705005ccdbfb27a7cd7c1d660e53720ec52d7bec9949c716 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T14:26:56,596   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-25.6.0-py3-none-any.whl#sha256=a8ccd10f0a2355ebed5a8dc0b88fb5e2287546990418ac116c382769fe83b5e3 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-17T14:26:56,597   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.3-py3-none-any.whl#sha256=ea77b5ac2a36d9901112289b002af371e3edde22d086a8b235e0e183efcbd5a1 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,597   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.2-py3-none-any.whl#sha256=a70bf8f019159fd571f91a44386526735eae928603b34595012e06a0e1c21402 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,598   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.1-py3-none-any.whl#sha256=faa5b9a08d80d53471eb4e1f6d39c0aefe670b40f4afef52d1beeaab0e023df4 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,598   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4-py3-none-any.whl#sha256=78b3ad6e93c4bf5109c6f2ab00c6520ed4588e54e09e12eb3d7d452848a36bf9 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,599   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b8-py3-none-any.whl#sha256=eeb1d3f9855d002deb07c4eedb6e1ad89779db86dbcfec3d04ee8e03385c0df5 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,599   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b7-py3-none-any.whl#sha256=9b5a7d175d0662fb4b210ece019e2d38397f02a8d1c5adf51442cd6dc77c0a52 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,600   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b6-py3-none-any.whl#sha256=2d45787d6e69a1317464b855967853e3ac7a22b3b27f17e8a636753040a93035 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,601   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b5-py3-none-any.whl#sha256=a60f524330ca169f9e3c15f5c35c00b8d0144fbfa2127fd8172ecbf45a823680 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,601   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b4-py3-none-any.whl#sha256=d419905e626e6790ed00972938fb269e5be969b77ac02c2ec581431c14ca9c06 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,602   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b3-py3-none-any.whl#sha256=937521bdd7ccf2f2b88c1d6a1c9e70265dc1efd65495c57d291ae560bebdd535 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,603   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b2-py3-none-any.whl#sha256=dc34830c4791cef76913516e175f6c69d921dd26db0b2c11395e64bcfff4354e (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,603   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,603   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,604   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,604   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,605   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,605   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-17T14:26:56,606 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,607 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/
2025-11-17T14:26:56,631 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates
2025-11-17T14:26:56,649 Collecting scipion-em-xmipp==26.0.1
2025-11-17T14:26:56,651   Created temporary directory: /tmp/pip-unpack-7e6uvger
2025-11-17T14:26:56,867   Downloading scipion_em_xmipp-26.0.1.tar.gz (1.5 MB)
2025-11-17T14:26:57,997   Added scipion-em-xmipp==26.0.1 from https://files.pythonhosted.org/packages/7b/92/3c6ab9e66f5527444a60372e642424c5132687b17db8e0d7cea81c0b859f/scipion_em_xmipp-26.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-m30veshf'
2025-11-17T14:26:58,001   Created temporary directory: /tmp/pip-build-env-9ibx6ow1
2025-11-17T14:26:58,006   Installing build dependencies: started
2025-11-17T14:26:58,008   Running command pip subprocess to install build dependencies
2025-11-17T14:26:59,180   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-11-17T14:26:59,783   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-17T14:26:59,806   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-17T14:27:01,514   Collecting setuptools
2025-11-17T14:27:01,624     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-11-17T14:27:04,533   Installing collected packages: setuptools
2025-11-17T14:27:08,137   Successfully installed setuptools-80.9.0
2025-11-17T14:27:08,401   Installing build dependencies: finished with status 'done'
2025-11-17T14:27:08,409   Getting requirements to build wheel: started
2025-11-17T14:27:08,410   Running command Getting requirements to build wheel
2025-11-17T14:27:09,053   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-17T14:27:09,053   `flat-layout` detected -- analysing .
2025-11-17T14:27:09,080   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.tests', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess']
2025-11-17T14:27:09,085   /tmp/pip-build-env-9ibx6ow1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-17T14:27:09,086   !!

2025-11-17T14:27:09,087           ********************************************************************************
2025-11-17T14:27:09,087           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-17T14:27:09,089           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-17T14:27:09,089           or your builds will no longer be supported.

2025-11-17T14:27:09,091           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-17T14:27:09,091           ********************************************************************************

2025-11-17T14:27:09,093   !!
2025-11-17T14:27:09,093     corresp(dist, value, root_dir)
2025-11-17T14:27:09,184   running egg_info
2025-11-17T14:27:09,191   writing scipion_em_xmipp.egg-info/PKG-INFO
2025-11-17T14:27:09,195   writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-17T14:27:09,197   writing entry points to scipion_em_xmipp.egg-info/entry_points.txt
2025-11-17T14:27:09,199   writing requirements to scipion_em_xmipp.egg-info/requires.txt
2025-11-17T14:27:09,200   writing top-level names to scipion_em_xmipp.egg-info/top_level.txt
2025-11-17T14:27:09,245   reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T14:27:09,260   reading manifest template 'MANIFEST.in'
2025-11-17T14:27:09,263   adding license file 'LICENSE'
2025-11-17T14:27:09,277   writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T14:27:09,375   Getting requirements to build wheel: finished with status 'done'
2025-11-17T14:27:09,379   Created temporary directory: /tmp/pip-modern-metadata-uyu3ygtz
2025-11-17T14:27:09,381   Preparing metadata (pyproject.toml): started
2025-11-17T14:27:09,382   Running command Preparing metadata (pyproject.toml)
2025-11-17T14:27:09,935   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-17T14:27:09,936   `flat-layout` detected -- analysing .
2025-11-17T14:27:09,955   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.tests', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess']
2025-11-17T14:27:09,959   /tmp/pip-build-env-9ibx6ow1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-17T14:27:09,960   !!

2025-11-17T14:27:09,961           ********************************************************************************
2025-11-17T14:27:09,962           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-17T14:27:09,963           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-17T14:27:09,963           or your builds will no longer be supported.

2025-11-17T14:27:09,964           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-17T14:27:09,965           ********************************************************************************

2025-11-17T14:27:09,966   !!
2025-11-17T14:27:09,967     corresp(dist, value, root_dir)
2025-11-17T14:27:10,054   running dist_info
2025-11-17T14:27:10,066   creating /tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info
2025-11-17T14:27:10,067   writing /tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/PKG-INFO
2025-11-17T14:27:10,070   writing dependency_links to /tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-17T14:27:10,072   writing entry points to /tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/entry_points.txt
2025-11-17T14:27:10,074   writing requirements to /tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/requires.txt
2025-11-17T14:27:10,075   writing top-level names to /tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/top_level.txt
2025-11-17T14:27:10,076   writing manifest file '/tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T14:27:10,115   reading manifest file '/tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T14:27:10,117   reading manifest template 'MANIFEST.in'
2025-11-17T14:27:10,120   adding license file 'LICENSE'
2025-11-17T14:27:10,130   writing manifest file '/tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T14:27:10,132   creating '/tmp/pip-modern-metadata-uyu3ygtz/scipion_em_xmipp-26.0.1.dist-info'
2025-11-17T14:27:10,261   Preparing metadata (pyproject.toml): finished with status 'done'
2025-11-17T14:27:10,266   Source in /tmp/pip-wheel-cm20ap_j/scipion-em-xmipp_b90103a122d7403cb7579e6dfdd936db has version 26.0.1, which satisfies requirement scipion-em-xmipp==26.0.1 from https://files.pythonhosted.org/packages/7b/92/3c6ab9e66f5527444a60372e642424c5132687b17db8e0d7cea81c0b859f/scipion_em_xmipp-26.0.1.tar.gz
2025-11-17T14:27:10,267   Removed scipion-em-xmipp==26.0.1 from https://files.pythonhosted.org/packages/7b/92/3c6ab9e66f5527444a60372e642424c5132687b17db8e0d7cea81c0b859f/scipion_em_xmipp-26.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-m30veshf'
2025-11-17T14:27:10,272 Created temporary directory: /tmp/pip-unpack-tq21it6k
2025-11-17T14:27:10,273 Building wheels for collected packages: scipion-em-xmipp
2025-11-17T14:27:10,278   Created temporary directory: /tmp/pip-wheel-44f6qcr5
2025-11-17T14:27:10,279   Destination directory: /tmp/pip-wheel-44f6qcr5
2025-11-17T14:27:10,281   Building wheel for scipion-em-xmipp (pyproject.toml): started
2025-11-17T14:27:10,283   Running command Building wheel for scipion-em-xmipp (pyproject.toml)
2025-11-17T14:27:10,826   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-17T14:27:10,826   `flat-layout` detected -- analysing .
2025-11-17T14:27:10,846   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.tests', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.protocols.protocol_preprocess']
2025-11-17T14:27:10,850   /tmp/pip-build-env-9ibx6ow1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-17T14:27:10,851   !!

2025-11-17T14:27:10,852           ********************************************************************************
2025-11-17T14:27:10,853           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-17T14:27:10,853           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-17T14:27:10,854           or your builds will no longer be supported.

2025-11-17T14:27:10,855           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-17T14:27:10,855           ********************************************************************************

2025-11-17T14:27:10,856   !!
2025-11-17T14:27:10,857     corresp(dist, value, root_dir)
2025-11-17T14:27:10,931   running bdist_wheel
2025-11-17T14:27:10,952   running build
2025-11-17T14:27:10,953   running build_py
2025-11-17T14:27:10,960   creating build/lib/xmipp3
2025-11-17T14:27:10,962   copying xmipp3/programs.py -> build/lib/xmipp3
2025-11-17T14:27:10,965   copying xmipp3/wizards.py -> build/lib/xmipp3
2025-11-17T14:27:10,968   copying xmipp3/bibtex.py -> build/lib/xmipp3
2025-11-17T14:27:10,971   copying xmipp3/logParser.py -> build/lib/xmipp3
2025-11-17T14:27:10,973   copying xmipp3/__init__.py -> build/lib/xmipp3
2025-11-17T14:27:10,976   copying xmipp3/base.py -> build/lib/xmipp3
2025-11-17T14:27:10,978   copying xmipp3/utils.py -> build/lib/xmipp3
2025-11-17T14:27:10,981   copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3
2025-11-17T14:27:10,983   copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3
2025-11-17T14:27:10,986   copying xmipp3/constants.py -> build/lib/xmipp3
2025-11-17T14:27:10,988   copying xmipp3/version.py -> build/lib/xmipp3
2025-11-17T14:27:10,990   creating build/lib/xmipp3/convert
2025-11-17T14:27:10,991   copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert
2025-11-17T14:27:10,995   copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert
2025-11-17T14:27:10,997   copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert
2025-11-17T14:27:10,999   copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert
2025-11-17T14:27:11,002   creating build/lib/xmipp3/tests
2025-11-17T14:27:11,003   copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,006   copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,008   copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,011   copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,013   copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,015   copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,018   copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,021   copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,023   copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,025   copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,027   copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,029   copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,031   copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,034   copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,036   copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,039   copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,041   copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,043   copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,045   copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,048   copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,051   copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,054   copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,056   copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,058   copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,060   copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,063   copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,065   copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,068   copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,070   copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,072   copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,075   copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,077   copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,080   copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,083   copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,085   copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests
2025-11-17T14:27:11,089   creating build/lib/xmipp3/legacy
2025-11-17T14:27:11,090   copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy
2025-11-17T14:27:11,093   creating build/lib/xmipp3/viewers
2025-11-17T14:27:11,094   copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,098   copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,101   copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,103   copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,106   copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,108   copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,110   copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,112   copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,115   copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,118   copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,120   copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,123   copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,125   copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,127   copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,130   copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,133   copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,135   copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,137   copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,140   copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,142   copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,144   copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,146   copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,149   copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,151   copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,153   copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,155   copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,158   copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,160   copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,162   copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,165   copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,167   copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,169   copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,171   copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,174   copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,177   copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,179   copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,181   copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,183   copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,186   copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,188   copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers
2025-11-17T14:27:11,193   creating build/lib/xmipp3/protocols
2025-11-17T14:27:11,194   copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,197   copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,200   copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,202   copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,205   copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,208   copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,211   copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,213   copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,216   copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,218   copying xmipp3/protocols/protocol_classify_pca_streaming.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,221   copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,223   copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,226   copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,228   copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,231   copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,233   copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,236   copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,238   copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,240   copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,243   copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,246   copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,249   copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,251   copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,254   copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,256   copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,259   copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,262   copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,264   copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,266   copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,269   copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,271   copying xmipp3/protocols/protocol_deep_center.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,274   copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,276   copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,279   copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,281   copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,284   copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,286   copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,289   copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,291   copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,293   copying xmipp3/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,296   copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,299   copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,302   copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,304   copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,307   copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,309   copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,312   copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,314   copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,317   copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,319   copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,322   copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,325   copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,328   copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,330   copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,333   copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,335   copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,337   copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,339   copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,342   copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,348   copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,350   copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,353   copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,356   copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,359   copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,362   copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,365   copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,367   copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,370   copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,373   copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,376   copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,379   copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,382   copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,385   copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,388   copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,391   copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,394   copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,397   copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,400   copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,403   copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,406   copying xmipp3/protocols/protocol_classify_pca.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,410   copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,413   copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,416   copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,419   copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,422   copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,425   copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,428   copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,430   copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,433   copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,436   copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,439   copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,442   copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,446   copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,449   copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,451   copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,454   copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,457   copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,460   copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,462   copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols
2025-11-17T14:27:11,465   creating build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,466   copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,468   copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,470   copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,473   copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,475   copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,477   copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,479   copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,481   copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,483   copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,487   copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,489   copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests
2025-11-17T14:27:11,492   creating build/lib/xmipp3/legacy/viewers
2025-11-17T14:27:11,493   copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T14:27:11,495   copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T14:27:11,498   copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T14:27:11,501   copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T14:27:11,503   copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T14:27:11,505   copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers
2025-11-17T14:27:11,508   creating build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,509   copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,512   copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,515   copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,517   copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,519   copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,522   copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,524   copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,527   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,530   copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,532   copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,534   copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,537   copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,540   copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,543   copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,545   copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,548   copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,550   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,553   copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,556   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,559   copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,562   copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,564   copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,567   copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,570   copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,573   copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,576   copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,579   copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols
2025-11-17T14:27:11,582   creating build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:11,583   copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:11,586   copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:11,588   copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:11,592   copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:11,594   copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:11,598   creating build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,600   copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,602   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,605   copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,607   copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,609   copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,612   copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,614   copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,617   copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,620   copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,623   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,626   copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,629   copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:11,631   running egg_info
2025-11-17T14:27:11,642   writing scipion_em_xmipp.egg-info/PKG-INFO
2025-11-17T14:27:11,646   writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-17T14:27:11,648   writing entry points to scipion_em_xmipp.egg-info/entry_points.txt
2025-11-17T14:27:11,649   writing requirements to scipion_em_xmipp.egg-info/requires.txt
2025-11-17T14:27:11,650   writing top-level names to scipion_em_xmipp.egg-info/top_level.txt
2025-11-17T14:27:11,678   reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T14:27:11,693   reading manifest template 'MANIFEST.in'
2025-11-17T14:27:11,695   adding license file 'LICENSE'
2025-11-17T14:27:11,708   writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-17T14:27:11,719   copying xmipp3/protocols.conf -> build/lib/xmipp3
2025-11-17T14:27:11,722   copying xmipp3/xmipp_logo.png -> build/lib/xmipp3
2025-11-17T14:27:11,726   copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3
2025-11-17T14:27:11,778   installing to build/bdist.linux-armv7l/wheel
2025-11-17T14:27:11,779   running install
2025-11-17T14:27:11,814   running install_lib
2025-11-17T14:27:11,823   creating build/bdist.linux-armv7l/wheel
2025-11-17T14:27:11,826   creating build/bdist.linux-armv7l/wheel/xmipp3
2025-11-17T14:27:11,828   creating build/bdist.linux-armv7l/wheel/xmipp3/convert
2025-11-17T14:27:11,829   copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T14:27:11,833   copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T14:27:11,835   copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T14:27:11,837   copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-17T14:27:11,840   copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:11,844   copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:11,846   copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:11,849   copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:11,852   copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:11,854   copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:11,868   copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:11,872   creating build/bdist.linux-armv7l/wheel/xmipp3/tests
2025-11-17T14:27:11,873   copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,876   copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,878   copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,880   copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,882   copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,885   copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,887   copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,891   copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,893   copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,894   copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,896   copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,898   copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,900   copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,902   copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,905   copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,907   copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,909   copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,911   copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,914   copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,916   copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,920   copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,922   copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,925   copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,927   copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,929   copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,931   copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,934   copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,936   copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,938   copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,941   copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,943   copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,946   copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,949   copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,952   copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,954   copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-17T14:27:11,959   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy
2025-11-17T14:27:11,960   copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy
2025-11-17T14:27:11,962   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests
2025-11-17T14:27:11,963   copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,965   copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,967   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,969   copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,972   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,974   copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,976   copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,978   copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,980   copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,983   copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,986   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-17T14:27:11,989   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers
2025-11-17T14:27:11,990   copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T14:27:11,993   copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T14:27:11,995   copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T14:27:11,997   copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T14:27:11,999   copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T14:27:12,001   copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-17T14:27:12,005   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols
2025-11-17T14:27:12,006   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,009   copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,012   copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,014   copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,017   copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,019   copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,021   copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,024   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,027   copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,030   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,031   copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,034   copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,037   copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,040   copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,042   copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,045   copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,047   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,050   copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,053   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,056   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,059   copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,061   copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,064   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,067   copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,069   copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,073   copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,075   copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-17T14:27:12,078   copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:12,081   creating build/bdist.linux-armv7l/wheel/xmipp3/viewers
2025-11-17T14:27:12,083   copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,086   copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,088   copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,091   copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,093   copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,095   copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,097   copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,099   copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,102   copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,104   copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,107   copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,109   copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,111   copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,113   copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,116   copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,118   copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,121   copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,123   copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,125   copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,128   copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,130   copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,132   copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,134   copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,136   copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,139   copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,141   copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,144   copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,146   copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,148   copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,150   copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,152   copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,154   copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,157   copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,159   copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,162   copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,164   copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,166   copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,168   copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,170   copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,173   copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-17T14:27:12,175   copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:12,177   copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:12,182   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols
2025-11-17T14:27:12,183   copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,186   copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,188   copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,191   copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,193   copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,196   copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,199   copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,201   copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,204   copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,206   copying build/lib/xmipp3/protocols/protocol_classify_pca_streaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,209   copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,211   copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,214   copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,216   copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,219   copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,222   copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,225   copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,227   copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,229   copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,232   copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,234   copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,237   copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,240   copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,243   copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,246   copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,248   copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,251   copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,254   copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,256   copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,259   copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,262   copying build/lib/xmipp3/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,264   copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,267   copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,270   copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,272   copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,275   copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,278   copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,281   copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,283   copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,286   copying build/lib/xmipp3/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,288   copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,291   copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,294   copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,297   copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,300   copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,303   copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,306   copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,309   copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,312   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:12,314   copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:12,317   copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:12,319   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:12,323   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:12,326   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-17T14:27:12,329   copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,331   copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,335   copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,338   copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,341   copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,344   copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,348   copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,351   copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,353   copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,355   copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,359   copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,363   copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,365   copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,368   copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,370   copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,373   copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,376   copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,379   copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,381   copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,385   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,386   copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,389   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,392   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,394   copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,396   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,399   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,401   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,404   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,407   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,411   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,414   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,418   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-17T14:27:12,421   copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,423   copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,426   copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,429   copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,432   copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,435   copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,437   copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,440   copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,443   copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,445   copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,448   copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,451   copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,453   copying build/lib/xmipp3/protocols/protocol_classify_pca.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,457   copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,460   copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,463   copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,465   copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,468   copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,470   copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,473   copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,476   copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,478   copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,481   copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,484   copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,487   copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,491   copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,493   copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,496   copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,499   copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,502   copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,505   copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,508   copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-17T14:27:12,511   copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:12,513   copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:12,516   copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:12,518   copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-17T14:27:12,520   running install_egg_info
2025-11-17T14:27:12,526   Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-26.0.1-py3.11.egg-info
2025-11-17T14:27:12,541   running install_scripts
2025-11-17T14:27:12,558   creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-26.0.1.dist-info/WHEEL
2025-11-17T14:27:12,563   creating '/tmp/pip-wheel-44f6qcr5/.tmp-0ne2s4ec/scipion_em_xmipp-26.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-11-17T14:27:12,576   adding 'scipion_em_xmipp-26.0.1.dist-info/licenses/LICENSE'
2025-11-17T14:27:12,581   adding 'xmipp3/__init__.py'
2025-11-17T14:27:12,586   adding 'xmipp3/base.py'
2025-11-17T14:27:12,593   adding 'xmipp3/bibtex.py'
2025-11-17T14:27:12,596   adding 'xmipp3/checkProtocolsConf.py'
2025-11-17T14:27:12,599   adding 'xmipp3/constants.py'
2025-11-17T14:27:12,601   adding 'xmipp3/logParser.py'
2025-11-17T14:27:12,605   adding 'xmipp3/programs.py'
2025-11-17T14:27:12,609   adding 'xmipp3/protocols.conf'
2025-11-17T14:27:12,612   adding 'xmipp3/protocolsCollectInfo.py'
2025-11-17T14:27:12,616   adding 'xmipp3/utils.py'
2025-11-17T14:27:12,618   adding 'xmipp3/version.py'
2025-11-17T14:27:12,622   adding 'xmipp3/wizards.py'
2025-11-17T14:27:12,641   adding 'xmipp3/xmipp_logo.png'
2025-11-17T14:27:12,731   adding 'xmipp3/xmipp_logo_devel.png'
2025-11-17T14:27:12,737   adding 'xmipp3/convert/__init__.py'
2025-11-17T14:27:12,745   adding 'xmipp3/convert/convert.py'
2025-11-17T14:27:12,748   adding 'xmipp3/convert/dataimport.py'
2025-11-17T14:27:12,750   adding 'xmipp3/convert/io_coordinates.py'
2025-11-17T14:27:12,752   adding 'xmipp3/legacy/__init__.py'
2025-11-17T14:27:12,754   adding 'xmipp3/legacy/protocols/__init__.py'
2025-11-17T14:27:12,756   adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py'
2025-11-17T14:27:12,758   adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py'
2025-11-17T14:27:12,762   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py'
2025-11-17T14:27:12,767   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py'
2025-11-17T14:27:12,770   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py'
2025-11-17T14:27:12,773   adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py'
2025-11-17T14:27:12,777   adding 'xmipp3/legacy/protocols/protocol_deep_align.py'
2025-11-17T14:27:12,780   adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py'
2025-11-17T14:27:12,783   adding 'xmipp3/legacy/protocols/protocol_enrich.py'
2025-11-17T14:27:12,786   adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py'
2025-11-17T14:27:12,787   adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py'
2025-11-17T14:27:12,789   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py'
2025-11-17T14:27:12,790   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py'
2025-11-17T14:27:12,793   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py'
2025-11-17T14:27:12,796   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py'
2025-11-17T14:27:12,799   adding 'xmipp3/legacy/protocols/protocol_mltomo.py'
2025-11-17T14:27:12,801   adding 'xmipp3/legacy/protocols/protocol_movie_average.py'
2025-11-17T14:27:12,803   adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py'
2025-11-17T14:27:12,805   adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py'
2025-11-17T14:27:12,810   adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py'
2025-11-17T14:27:12,812   adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py'
2025-11-17T14:27:12,814   adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py'
2025-11-17T14:27:12,817   adding 'xmipp3/legacy/protocols/protocol_solid_angles.py'
2025-11-17T14:27:12,819   adding 'xmipp3/legacy/protocols/protocol_split_volume.py'
2025-11-17T14:27:12,824   adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py'
2025-11-17T14:27:12,826   adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py'
2025-11-17T14:27:12,828   adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py'
2025-11-17T14:27:12,829   adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py'
2025-11-17T14:27:12,831   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py'
2025-11-17T14:27:12,832   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py'
2025-11-17T14:27:12,834   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py'
2025-11-17T14:27:12,835   adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py'
2025-11-17T14:27:12,836   adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py'
2025-11-17T14:27:12,838   adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py'
2025-11-17T14:27:12,840   adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py'
2025-11-17T14:27:12,845   adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py'
2025-11-17T14:27:12,848   adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py'
2025-11-17T14:27:12,850   adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py'
2025-11-17T14:27:12,851   adding 'xmipp3/legacy/viewers/viewer_deep_align.py'
2025-11-17T14:27:12,853   adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py'
2025-11-17T14:27:12,855   adding 'xmipp3/legacy/viewers/viewer_mltomo.py'
2025-11-17T14:27:12,856   adding 'xmipp3/legacy/viewers/viewer_solid_angles.py'
2025-11-17T14:27:12,857   adding 'xmipp3/legacy/viewers/viewer_split_volume.py'
2025-11-17T14:27:12,861   adding 'xmipp3/protocols/__init__.py'
2025-11-17T14:27:12,864   adding 'xmipp3/protocols/protocol_align_volume.py'
2025-11-17T14:27:12,865   adding 'xmipp3/protocols/protocol_align_volume_and_particles.py'
2025-11-17T14:27:12,867   adding 'xmipp3/protocols/protocol_analyze_local_ctf.py'
2025-11-17T14:27:12,871   adding 'xmipp3/protocols/protocol_angular_graph_consistency.py'
2025-11-17T14:27:12,872   adding 'xmipp3/protocols/protocol_apply_alignment.py'
2025-11-17T14:27:12,875   adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py'
2025-11-17T14:27:12,876   adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py'
2025-11-17T14:27:12,878   adding 'xmipp3/protocols/protocol_apply_zernike3d.py'
2025-11-17T14:27:12,880   adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py'
2025-11-17T14:27:12,882   adding 'xmipp3/protocols/protocol_break_symmetry.py'
2025-11-17T14:27:12,884   adding 'xmipp3/protocols/protocol_center_particles.py'
2025-11-17T14:27:12,887   adding 'xmipp3/protocols/protocol_cl2d.py'
2025-11-17T14:27:12,888   adding 'xmipp3/protocols/protocol_cl2d_align.py'
2025-11-17T14:27:12,891   adding 'xmipp3/protocols/protocol_cl2d_clustering.py'
2025-11-17T14:27:12,893   adding 'xmipp3/protocols/protocol_classes_2d_mapping.py'
2025-11-17T14:27:12,896   adding 'xmipp3/protocols/protocol_classify_pca.py'
2025-11-17T14:27:12,899   adding 'xmipp3/protocols/protocol_classify_pca_streaming.py'
2025-11-17T14:27:12,900   adding 'xmipp3/protocols/protocol_compare_angles.py'
2025-11-17T14:27:12,904   adding 'xmipp3/protocols/protocol_compare_reprojections.py'
2025-11-17T14:27:12,906   adding 'xmipp3/protocols/protocol_compute_likelihood.py'
2025-11-17T14:27:12,909   adding 'xmipp3/protocols/protocol_consensus_classes.py'
2025-11-17T14:27:12,911   adding 'xmipp3/protocols/protocol_consensus_local_ctf.py'
2025-11-17T14:27:12,913   adding 'xmipp3/protocols/protocol_convert_pdb.py'
2025-11-17T14:27:12,915   adding 'xmipp3/protocols/protocol_core_analysis.py'
2025-11-17T14:27:12,917   adding 'xmipp3/protocols/protocol_create_gallery.py'
2025-11-17T14:27:12,921   adding 'xmipp3/protocols/protocol_ctf_consensus.py'
2025-11-17T14:27:12,923   adding 'xmipp3/protocols/protocol_ctf_correct_phase.py'
2025-11-17T14:27:12,924   adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py'
2025-11-17T14:27:12,926   adding 'xmipp3/protocols/protocol_ctf_defocus_group.py'
2025-11-17T14:27:12,929   adding 'xmipp3/protocols/protocol_ctf_micrographs.py'
2025-11-17T14:27:12,931   adding 'xmipp3/protocols/protocol_deep_center.py'
2025-11-17T14:27:12,933   adding 'xmipp3/protocols/protocol_deep_center_predict.py'
2025-11-17T14:27:12,934   adding 'xmipp3/protocols/protocol_deep_hand.py'
2025-11-17T14:27:12,937   adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py'
2025-11-17T14:27:12,939   adding 'xmipp3/protocols/protocol_denoise_particles.py'
2025-11-17T14:27:12,942   adding 'xmipp3/protocols/protocol_eliminate_empty_images.py'
2025-11-17T14:27:12,944   adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py'
2025-11-17T14:27:12,947   adding 'xmipp3/protocols/protocol_extract_particles.py'
2025-11-17T14:27:12,950   adding 'xmipp3/protocols/protocol_extract_particles_pairs.py'
2025-11-17T14:27:12,953   adding 'xmipp3/protocols/protocol_flexalign.py'
2025-11-17T14:27:12,955   adding 'xmipp3/protocols/protocol_generate_reprojections.py'
2025-11-17T14:27:12,956   adding 'xmipp3/protocols/protocol_helical_parameters.py'
2025-11-17T14:27:12,958   adding 'xmipp3/protocols/protocol_kerdensom.py'
2025-11-17T14:27:12,960   adding 'xmipp3/protocols/protocol_local_ctf.py'
2025-11-17T14:27:12,962   adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py'
2025-11-17T14:27:12,965   adding 'xmipp3/protocols/protocol_ml2d.py'
2025-11-17T14:27:12,968   adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py'
2025-11-17T14:27:12,971   adding 'xmipp3/protocols/protocol_movie_dose_analysis.py'
2025-11-17T14:27:12,974   adding 'xmipp3/protocols/protocol_movie_gain.py'
2025-11-17T14:27:12,977   adding 'xmipp3/protocols/protocol_movie_max_shift.py'
2025-11-17T14:27:12,978   adding 'xmipp3/protocols/protocol_movie_split_frames.py'
2025-11-17T14:27:12,980   adding 'xmipp3/protocols/protocol_multiple_fscs.py'
2025-11-17T14:27:12,983   adding 'xmipp3/protocols/protocol_multireference_alignability.py'
2025-11-17T14:27:12,984   adding 'xmipp3/protocols/protocol_normalize_strain.py'
2025-11-17T14:27:12,986   adding 'xmipp3/protocols/protocol_particle_pick.py'
2025-11-17T14:27:12,988   adding 'xmipp3/protocols/protocol_particle_pick_automatic.py'
2025-11-17T14:27:12,991   adding 'xmipp3/protocols/protocol_particle_pick_consensus.py'
2025-11-17T14:27:12,993   adding 'xmipp3/protocols/protocol_particle_pick_pairs.py'
2025-11-17T14:27:12,994   adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py'
2025-11-17T14:27:12,996   adding 'xmipp3/protocols/protocol_phantom_create.py'
2025-11-17T14:27:12,997   adding 'xmipp3/protocols/protocol_pick_noise.py'
2025-11-17T14:27:12,999   adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py'
2025-11-17T14:27:13,002   adding 'xmipp3/protocols/protocol_preprocess_micrographs.py'
2025-11-17T14:27:13,005   adding 'xmipp3/protocols/protocol_random_conical_tilt.py'
2025-11-17T14:27:13,008   adding 'xmipp3/protocols/protocol_ransac.py'
2025-11-17T14:27:13,010   adding 'xmipp3/protocols/protocol_reconstruct_fourier.py'
2025-11-17T14:27:13,020   adding 'xmipp3/protocols/protocol_reconstruct_highres.py'
2025-11-17T14:27:13,024   adding 'xmipp3/protocols/protocol_reconstruct_significant.py'
2025-11-17T14:27:13,027   adding 'xmipp3/protocols/protocol_reconstruct_swarm.py'
2025-11-17T14:27:13,029   adding 'xmipp3/protocols/protocol_resolution3d.py'
2025-11-17T14:27:13,031   adding 'xmipp3/protocols/protocol_resolution_bfactor.py'
2025-11-17T14:27:13,033   adding 'xmipp3/protocols/protocol_resolution_deepres.py'
2025-11-17T14:27:13,035   adding 'xmipp3/protocols/protocol_resolution_directional.py'
2025-11-17T14:27:13,037   adding 'xmipp3/protocols/protocol_resolution_fso.py'
2025-11-17T14:27:13,040   adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py'
2025-11-17T14:27:13,041   adding 'xmipp3/protocols/protocol_rotate_volume.py'
2025-11-17T14:27:13,043   adding 'xmipp3/protocols/protocol_rotational_symmetry.py'
2025-11-17T14:27:13,052   adding 'xmipp3/protocols/protocol_screen_deepConsensus.py'
2025-11-17T14:27:13,056   adding 'xmipp3/protocols/protocol_screen_particles.py'
2025-11-17T14:27:13,057   adding 'xmipp3/protocols/protocol_shift_particles.py'
2025-11-17T14:27:13,059   adding 'xmipp3/protocols/protocol_shift_volume.py'
2025-11-17T14:27:13,061   adding 'xmipp3/protocols/protocol_simulate_ctf.py'
2025-11-17T14:27:13,063   adding 'xmipp3/protocols/protocol_structure_map.py'
2025-11-17T14:27:13,066   adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py'
2025-11-17T14:27:13,068   adding 'xmipp3/protocols/protocol_subtract_projection.py'
2025-11-17T14:27:13,071   adding 'xmipp3/protocols/protocol_tilt_analysis.py'
2025-11-17T14:27:13,073   adding 'xmipp3/protocols/protocol_trigger_data.py'
2025-11-17T14:27:13,076   adding 'xmipp3/protocols/protocol_validate_fscq.py'
2025-11-17T14:27:13,079   adding 'xmipp3/protocols/protocol_validate_nontilt.py'
2025-11-17T14:27:13,082   adding 'xmipp3/protocols/protocol_validate_overfitting.py'
2025-11-17T14:27:13,084   adding 'xmipp3/protocols/protocol_volume_adjust_sub.py'
2025-11-17T14:27:13,086   adding 'xmipp3/protocols/protocol_volume_consensus.py'
2025-11-17T14:27:13,088   adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py'
2025-11-17T14:27:13,090   adding 'xmipp3/protocols/protocol_volume_local_adjust.py'
2025-11-17T14:27:13,092   adding 'xmipp3/protocols/protocol_volume_local_sharpening.py'
2025-11-17T14:27:13,093   adding 'xmipp3/protocols/protocol_volume_strain.py'
2025-11-17T14:27:13,094   adding 'xmipp3/protocols/protocol_write_testC.py'
2025-11-17T14:27:13,096   adding 'xmipp3/protocols/protocol_write_testP.py'
2025-11-17T14:27:13,097   adding 'xmipp3/protocols/protocol_preprocess/__init__.py'
2025-11-17T14:27:13,099   adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py'
2025-11-17T14:27:13,101   adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py'
2025-11-17T14:27:13,102   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py'
2025-11-17T14:27:13,104   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py'
2025-11-17T14:27:13,107   adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py'
2025-11-17T14:27:13,110   adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py'
2025-11-17T14:27:13,112   adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py'
2025-11-17T14:27:13,114   adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py'
2025-11-17T14:27:13,116   adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py'
2025-11-17T14:27:13,119   adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py'
2025-11-17T14:27:13,121   adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py'
2025-11-17T14:27:13,123   adding 'xmipp3/protocols/protocol_projmatch/__init__.py'
2025-11-17T14:27:13,127   adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py'
2025-11-17T14:27:13,129   adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py'
2025-11-17T14:27:13,133   adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py'
2025-11-17T14:27:13,135   adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py'
2025-11-17T14:27:13,137   adding 'xmipp3/tests/__init__.py'
2025-11-17T14:27:13,141   adding 'xmipp3/tests/test_convert_xmipp.py'
2025-11-17T14:27:13,143   adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py'
2025-11-17T14:27:13,144   adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py'
2025-11-17T14:27:13,146   adding 'xmipp3/tests/test_protocol_compare_angles.py'
2025-11-17T14:27:13,148   adding 'xmipp3/tests/test_protocol_consensus_classes3D.py'
2025-11-17T14:27:13,149   adding 'xmipp3/tests/test_protocol_ctf_consensus.py'
2025-11-17T14:27:13,152   adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py'
2025-11-17T14:27:13,154   adding 'xmipp3/tests/test_protocol_likelihood.py'
2025-11-17T14:27:13,155   adding 'xmipp3/tests/test_protocol_monodir.py'
2025-11-17T14:27:13,156   adding 'xmipp3/tests/test_protocol_multiple_fsc.py'
2025-11-17T14:27:13,158   adding 'xmipp3/tests/test_protocol_multireference_alignability.py'
2025-11-17T14:27:13,159   adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py'
2025-11-17T14:27:13,161   adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py'
2025-11-17T14:27:13,162   adding 'xmipp3/tests/test_protocol_simulate_ctf.py'
2025-11-17T14:27:13,164   adding 'xmipp3/tests/test_protocol_split_frames.py'
2025-11-17T14:27:13,165   adding 'xmipp3/tests/test_protocol_validate_fscq.py'
2025-11-17T14:27:13,166   adding 'xmipp3/tests/test_protocol_validate_overfitting.py'
2025-11-17T14:27:13,168   adding 'xmipp3/tests/test_protocols_add_noise.py'
2025-11-17T14:27:13,169   adding 'xmipp3/tests/test_protocols_continuousflex.py'
2025-11-17T14:27:13,171   adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py'
2025-11-17T14:27:13,172   adding 'xmipp3/tests/test_protocols_deepcenter_predict.py'
2025-11-17T14:27:13,174   adding 'xmipp3/tests/test_protocols_deepres.py'
2025-11-17T14:27:13,175   adding 'xmipp3/tests/test_protocols_fso.py'
2025-11-17T14:27:13,176   adding 'xmipp3/tests/test_protocols_highres.py'
2025-11-17T14:27:13,178   adding 'xmipp3/tests/test_protocols_local_defocus.py'
2025-11-17T14:27:13,180   adding 'xmipp3/tests/test_protocols_localdeblur.py'
2025-11-17T14:27:13,181   adding 'xmipp3/tests/test_protocols_monores.py'
2025-11-17T14:27:13,182   adding 'xmipp3/tests/test_protocols_realignment_classes.py'
2025-11-17T14:27:13,189   adding 'xmipp3/tests/test_protocols_xmipp_2d.py'
2025-11-17T14:27:13,197   adding 'xmipp3/tests/test_protocols_xmipp_3d.py'
2025-11-17T14:27:13,203   adding 'xmipp3/tests/test_protocols_xmipp_mics.py'
2025-11-17T14:27:13,205   adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py'
2025-11-17T14:27:13,207   adding 'xmipp3/tests/test_protocols_xmipp_movies.py'
2025-11-17T14:27:13,209   adding 'xmipp3/tests/test_protocols_zernike3d.py'
2025-11-17T14:27:13,211   adding 'xmipp3/viewers/__init__.py'
2025-11-17T14:27:13,213   adding 'xmipp3/viewers/plotter.py'
2025-11-17T14:27:13,215   adding 'xmipp3/viewers/viewer.py'
2025-11-17T14:27:13,217   adding 'xmipp3/viewers/viewer_LL_matrix.py'
2025-11-17T14:27:13,218   adding 'xmipp3/viewers/viewer_analyze_local_ctf.py'
2025-11-17T14:27:13,220   adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py'
2025-11-17T14:27:13,221   adding 'xmipp3/viewers/viewer_cl2d.py'
2025-11-17T14:27:13,223   adding 'xmipp3/viewers/viewer_cl2d_clustering.py'
2025-11-17T14:27:13,224   adding 'xmipp3/viewers/viewer_consensus_classes.py'
2025-11-17T14:27:13,226   adding 'xmipp3/viewers/viewer_ctf_consensus.py'
2025-11-17T14:27:13,227   adding 'xmipp3/viewers/viewer_deepEMHancer.py'
2025-11-17T14:27:13,229   adding 'xmipp3/viewers/viewer_deep_consensus.py'
2025-11-17T14:27:13,230   adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py'
2025-11-17T14:27:13,232   adding 'xmipp3/viewers/viewer_dose_analysis.py'
2025-11-17T14:27:13,233   adding 'xmipp3/viewers/viewer_eliminate_empty_images.py'
2025-11-17T14:27:13,235   adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py'
2025-11-17T14:27:13,236   adding 'xmipp3/viewers/viewer_local_sharpening.py'
2025-11-17T14:27:13,238   adding 'xmipp3/viewers/viewer_ml2d.py'
2025-11-17T14:27:13,239   adding 'xmipp3/viewers/viewer_movie_alignment.py'
2025-11-17T14:27:13,241   adding 'xmipp3/viewers/viewer_normalize_strain.py'
2025-11-17T14:27:13,242   adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py'
2025-11-17T14:27:13,246   adding 'xmipp3/viewers/viewer_projmatch.py'
2025-11-17T14:27:13,247   adding 'xmipp3/viewers/viewer_ransac.py'
2025-11-17T14:27:13,249   adding 'xmipp3/viewers/viewer_reconstruct_highres.py'
2025-11-17T14:27:13,252   adding 'xmipp3/viewers/viewer_resolution3d.py'
2025-11-17T14:27:13,253   adding 'xmipp3/viewers/viewer_resolution_bfactor.py'
2025-11-17T14:27:13,255   adding 'xmipp3/viewers/viewer_resolution_deepres.py'
2025-11-17T14:27:13,257   adding 'xmipp3/viewers/viewer_resolution_directional.py'
2025-11-17T14:27:13,260   adding 'xmipp3/viewers/viewer_resolution_fso.py'
2025-11-17T14:27:13,262   adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py'
2025-11-17T14:27:13,265   adding 'xmipp3/viewers/viewer_structure_map.py'
2025-11-17T14:27:13,266   adding 'xmipp3/viewers/viewer_subtract_projection.py'
2025-11-17T14:27:13,267   adding 'xmipp3/viewers/viewer_swarm.py'
2025-11-17T14:27:13,270   adding 'xmipp3/viewers/viewer_validate_fscq.py'
2025-11-17T14:27:13,271   adding 'xmipp3/viewers/viewer_validate_nontilt.py'
2025-11-17T14:27:13,273   adding 'xmipp3/viewers/viewer_validate_overfitting.py'
2025-11-17T14:27:13,274   adding 'xmipp3/viewers/viewer_volume_consensus.py'
2025-11-17T14:27:13,276   adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py'
2025-11-17T14:27:13,277   adding 'xmipp3/viewers/viewer_volume_strain.py'
2025-11-17T14:27:13,279   adding 'xmipp3/viewers/viewer_volume_subtraction.py'
2025-11-17T14:27:13,280   adding 'scipion_em_xmipp-26.0.1.dist-info/METADATA'
2025-11-17T14:27:13,281   adding 'scipion_em_xmipp-26.0.1.dist-info/WHEEL'
2025-11-17T14:27:13,282   adding 'scipion_em_xmipp-26.0.1.dist-info/entry_points.txt'
2025-11-17T14:27:13,283   adding 'scipion_em_xmipp-26.0.1.dist-info/top_level.txt'
2025-11-17T14:27:13,287   adding 'scipion_em_xmipp-26.0.1.dist-info/RECORD'
2025-11-17T14:27:13,309   removing build/bdist.linux-armv7l/wheel
2025-11-17T14:27:13,494   Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done'
2025-11-17T14:27:13,813   Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-26.0.1-py3-none-any.whl size=1806343 sha256=cdaf6d4c7a56851b5454ae7a87c4b94bf84acf0a5c420012aeaeb685605ead72
2025-11-17T14:27:13,815   Stored in directory: /tmp/pip-ephem-wheel-cache-c9vv3l3y/wheels/86/22/53/ceec370a4fbd28aea31a1e8236f745ee8fc77883a8cc36b3f6
2025-11-17T14:27:13,836 Successfully built scipion-em-xmipp
2025-11-17T14:27:13,902 Removed build tracker: '/tmp/pip-build-tracker-m30veshf'