2025-11-17T18:01:01,119 Created temporary directory: /tmp/pip-ephem-wheel-cache-uc7d3mc6 2025-11-17T18:01:01,121 Created temporary directory: /tmp/pip-build-tracker-tl5c9235 2025-11-17T18:01:01,122 Initialized build tracking at /tmp/pip-build-tracker-tl5c9235 2025-11-17T18:01:01,123 Created build tracker: /tmp/pip-build-tracker-tl5c9235 2025-11-17T18:01:01,123 Entered build tracker: /tmp/pip-build-tracker-tl5c9235 2025-11-17T18:01:01,124 Created temporary directory: /tmp/pip-wheel-4xye5h46 2025-11-17T18:01:01,127 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-17T18:01:01,129 Created temporary directory: /tmp/pip-ephem-wheel-cache-0igpqfp_ 2025-11-17T18:01:01,151 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-17T18:01:01,155 2 location(s) to search for versions of seqmat: 2025-11-17T18:01:01,155 * https://pypi.org/simple/seqmat/ 2025-11-17T18:01:01,155 * https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:01:01,155 Fetching project page and analyzing links: https://pypi.org/simple/seqmat/ 2025-11-17T18:01:01,156 Getting page https://pypi.org/simple/seqmat/ 2025-11-17T18:01:01,158 Found index url https://pypi.org/simple 2025-11-17T18:01:01,372 Fetched page https://pypi.org/simple/seqmat/ as application/vnd.pypi.simple.v1+json 2025-11-17T18:01:01,386 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/29/ac/af8917c09019f4f5bd63597b98d13e347070d57562e39ed4017e3ddde981/seqmat-0.1.0-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.8) 2025-11-17T18:01:01,387 Found link https://files.pythonhosted.org/packages/85/73/49c0d6bf3ce4f71ba4e7953692a694f2ec0103ced500be4428bdf40367f2/seqmat-0.1.0.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.8), version: 0.1.0 2025-11-17T18:01:01,388 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/ba/c1/5da1e880e2258a8985806d86d2fd80dccfad87e5a645aed01a4246b412e8/seqmat-0.1.1-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.8) 2025-11-17T18:01:01,389 Found link https://files.pythonhosted.org/packages/3b/38/e835bbacaf3e87c569a662d68d5465e13631ddafd3afee4f1f05ccafd9b2/seqmat-0.1.1.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.8), version: 0.1.1 2025-11-17T18:01:01,390 Skipping link: No 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(requires-python:>=3.8) 2025-11-17T18:01:01,393 Found link https://files.pythonhosted.org/packages/29/df/959328734ee929a10eaa984fab22538a6f666f27326f61240d7d2416ef87/seqmat-0.1.4.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.8), version: 0.1.4 2025-11-17T18:01:01,394 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/a6/2d/7ff0fd96f07c3e1bd81156a260c3115108fb9660544428777fb373920237/seqmat-0.1.5-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.8) 2025-11-17T18:01:01,395 Found link https://files.pythonhosted.org/packages/db/9a/51544feeff61c92eccfc440c857498e48792bdbc603f5369d8b34e176d71/seqmat-0.1.5.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.8), version: 0.1.5 2025-11-17T18:01:01,396 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/86/d7/eaf78c6ae04475d00874216487096ac02f00d97451ad2878e63d4472a06e/seqmat-0.1.6-py3-none-any.whl (from 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2025-11-17T18:01:01,405 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/7d/78/24bb0de5b5156807a5c53a57f58ffeb0d8650c8a49941cebf82f8f391434/seqmat-0.1.12-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:01:01,406 Found link https://files.pythonhosted.org/packages/97/36/6d5ae7021375224d55fb5c5bb9d00b0ec08e1d2a0ae02a7ce7c60255c76d/seqmat-0.1.12.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.12 2025-11-17T18:01:01,407 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/50/8e/f6c0423aa6dd717823fb15b08002eb8227ef8a9b4da1e1d452d0e8eff2ac/seqmat-0.1.13-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:01:01,408 Found link https://files.pythonhosted.org/packages/c0/18/6aea9f02e6dc225e6a29802dc4623dc886b4a7ef20cca314e5fde45d75d5/seqmat-0.1.13.tar.gz (from https://pypi.org/simple/seqmat/) 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(requires-python:>=3.10) 2025-11-17T18:01:01,418 Found link https://files.pythonhosted.org/packages/f6/67/3bca168f530992378db5ace241bf7ae2ddf34cd2a9daa0849cbd882092b0/seqmat-0.1.19.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.19 2025-11-17T18:01:01,419 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/d2/1a/82ded4ed274ee37f8f5eac5a980d7204b741e258c91bbd1c2fb788ee8430/seqmat-0.1.20-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:01:01,420 Found link https://files.pythonhosted.org/packages/a0/c0/6adaed0bd26fb9111796ea55414918348e87fa3ed49f01a557540a5e0196/seqmat-0.1.20.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.20 2025-11-17T18:01:01,420 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/45/d6/3ebb5057244cac2848a5cdcd1c6e28f7d20ace11a42a0244d8856459f121/seqmat-0.1.21-py3-none-any.whl 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link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/49/3d/b6170ac7403b851a7d594c44a04756ec742d107eb2b148c4311b228eee55/seqmat-0.1.38-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:01:01,445 Found link https://files.pythonhosted.org/packages/4f/11/01b7e1fb8c724fe188f28dad91bef9b72cbabb015463041886053f3404e6/seqmat-0.1.38.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.38 2025-11-17T18:01:01,445 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/e0/30/d0fa8f8e1b0502621635870a6afacb984997e17f2eb68547eccb0b3a74d6/seqmat-0.1.39-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:01:01,446 Found link https://files.pythonhosted.org/packages/da/8b/454189cc34b7ef764539109eddcf73f00d08e0ceba8e3db61d18d2221364/seqmat-0.1.39.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.39 2025-11-17T18:01:01,447 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/9f/19/1e78d82113efa6570bcf251232c21774545ec8b0713b556dc04126df951b/seqmat-0.1.40-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:01:01,447 Found link https://files.pythonhosted.org/packages/80/3b/46b1d85cc9803bf087ef6db79f8c6607dd101e4263133b0c32e922410312/seqmat-0.1.40.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.40 2025-11-17T18:01:01,448 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:01:01,449 Getting page https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:01:01,450 Found index url https://www.piwheels.org/simple 2025-11-17T18:01:01,608 Fetched page https://www.piwheels.org/simple/seqmat/ as text/html 2025-11-17T18:01:01,618 Skipping link: No binaries permitted for seqmat: 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https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.0-py3-none-any.whl#sha256=4aac50f8ae8811ac5c12742f14fc069bb3f1181c8175af2941a4a8a1c96bb424 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-11-17T18:01:01,637 Skipping link: not a file: https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:01:01,638 Skipping link: not a file: https://pypi.org/simple/seqmat/ 2025-11-17T18:01:01,661 Given no hashes to check 1 links for project 'seqmat': discarding no candidates 2025-11-17T18:01:01,679 Collecting seqmat==0.1.39 2025-11-17T18:01:01,682 Created temporary directory: /tmp/pip-unpack-qydfkx08 2025-11-17T18:01:01,897 Downloading seqmat-0.1.39.tar.gz (48 kB) 2025-11-17T18:01:02,003 Added seqmat==0.1.39 from https://files.pythonhosted.org/packages/da/8b/454189cc34b7ef764539109eddcf73f00d08e0ceba8e3db61d18d2221364/seqmat-0.1.39.tar.gz to build tracker '/tmp/pip-build-tracker-tl5c9235' 2025-11-17T18:01:02,004 Running setup.py (path:/tmp/pip-wheel-4xye5h46/seqmat_9f7ecc7e817443ffbfff43758b8d37fb/setup.py) egg_info for package seqmat 2025-11-17T18:01:02,005 Created temporary directory: /tmp/pip-pip-egg-info-ht1vfwt1 2025-11-17T18:01:02,006 Preparing metadata (setup.py): started 2025-11-17T18:01:02,007 Running command python setup.py egg_info 2025-11-17T18:01:02,850 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-17T18:01:02,850 !! 2025-11-17T18:01:02,851 ******************************************************************************** 2025-11-17T18:01:02,852 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-17T18:01:02,853 License :: OSI Approved :: MIT License 2025-11-17T18:01:02,854 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-17T18:01:02,854 ******************************************************************************** 2025-11-17T18:01:02,855 !! 2025-11-17T18:01:02,856 self._finalize_license_expression() 2025-11-17T18:01:02,882 running egg_info 2025-11-17T18:01:02,910 creating /tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info 2025-11-17T18:01:02,911 writing /tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/PKG-INFO 2025-11-17T18:01:02,918 writing dependency_links to /tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/dependency_links.txt 2025-11-17T18:01:02,920 writing entry points to /tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/entry_points.txt 2025-11-17T18:01:02,923 writing requirements to /tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/requires.txt 2025-11-17T18:01:02,925 writing top-level names to /tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/top_level.txt 2025-11-17T18:01:02,927 writing manifest file '/tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/SOURCES.txt' 2025-11-17T18:01:03,017 reading manifest file '/tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/SOURCES.txt' 2025-11-17T18:01:03,019 reading manifest template 'MANIFEST.in' 2025-11-17T18:01:03,027 adding license file 'LICENSE' 2025-11-17T18:01:03,031 writing manifest file '/tmp/pip-pip-egg-info-ht1vfwt1/seqmat.egg-info/SOURCES.txt' 2025-11-17T18:01:03,139 Preparing metadata (setup.py): finished with status 'done' 2025-11-17T18:01:03,144 Source in /tmp/pip-wheel-4xye5h46/seqmat_9f7ecc7e817443ffbfff43758b8d37fb has version 0.1.39, which satisfies requirement seqmat==0.1.39 from https://files.pythonhosted.org/packages/da/8b/454189cc34b7ef764539109eddcf73f00d08e0ceba8e3db61d18d2221364/seqmat-0.1.39.tar.gz 2025-11-17T18:01:03,145 Removed seqmat==0.1.39 from https://files.pythonhosted.org/packages/da/8b/454189cc34b7ef764539109eddcf73f00d08e0ceba8e3db61d18d2221364/seqmat-0.1.39.tar.gz from build tracker '/tmp/pip-build-tracker-tl5c9235' 2025-11-17T18:01:03,155 Created temporary directory: /tmp/pip-unpack-9rtwsqrl 2025-11-17T18:01:03,156 Building wheels for collected packages: seqmat 2025-11-17T18:01:03,160 Created temporary directory: /tmp/pip-wheel-5eep6dl3 2025-11-17T18:01:03,161 Building wheel for seqmat (setup.py): started 2025-11-17T18:01:03,162 Destination directory: /tmp/pip-wheel-5eep6dl3 2025-11-17T18:01:03,163 Running command python setup.py bdist_wheel 2025-11-17T18:01:03,999 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-17T18:01:03,999 !! 2025-11-17T18:01:04,000 ******************************************************************************** 2025-11-17T18:01:04,001 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-17T18:01:04,002 License :: OSI Approved :: MIT License 2025-11-17T18:01:04,003 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-17T18:01:04,004 ******************************************************************************** 2025-11-17T18:01:04,005 !! 2025-11-17T18:01:04,006 self._finalize_license_expression() 2025-11-17T18:01:04,006 running bdist_wheel 2025-11-17T18:01:04,137 running build 2025-11-17T18:01:04,138 running build_py 2025-11-17T18:01:04,170 creating build/lib/seqmat 2025-11-17T18:01:04,172 copying seqmat/__init__.py -> build/lib/seqmat 2025-11-17T18:01:04,175 copying seqmat/transcript.py -> build/lib/seqmat 2025-11-17T18:01:04,179 copying seqmat/seqmat.py -> build/lib/seqmat 2025-11-17T18:01:04,181 copying seqmat/gene.py -> build/lib/seqmat 2025-11-17T18:01:04,184 copying seqmat/utils.py -> build/lib/seqmat 2025-11-17T18:01:04,187 copying seqmat/config.py -> build/lib/seqmat 2025-11-17T18:01:04,189 copying seqmat/cli.py -> build/lib/seqmat 2025-11-17T18:01:04,192 creating build/lib/tests 2025-11-17T18:01:04,193 copying tests/test_gene.py -> build/lib/tests 2025-11-17T18:01:04,195 copying tests/__init__.py -> build/lib/tests 2025-11-17T18:01:04,197 copying tests/test_seqmat.py -> build/lib/tests 2025-11-17T18:01:04,198 running egg_info 2025-11-17T18:01:04,226 writing seqmat.egg-info/PKG-INFO 2025-11-17T18:01:04,233 writing dependency_links to seqmat.egg-info/dependency_links.txt 2025-11-17T18:01:04,234 writing entry points to seqmat.egg-info/entry_points.txt 2025-11-17T18:01:04,237 writing requirements to seqmat.egg-info/requires.txt 2025-11-17T18:01:04,239 writing top-level names to seqmat.egg-info/top_level.txt 2025-11-17T18:01:04,271 reading manifest file 'seqmat.egg-info/SOURCES.txt' 2025-11-17T18:01:04,274 reading manifest template 'MANIFEST.in' 2025-11-17T18:01:04,281 adding license file 'LICENSE' 2025-11-17T18:01:04,284 writing manifest file 'seqmat.egg-info/SOURCES.txt' 2025-11-17T18:01:04,315 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-11-17T18:01:04,315 !! 2025-11-17T18:01:04,317 ******************************************************************************** 2025-11-17T18:01:04,317 Please avoid running ``setup.py`` directly. 2025-11-17T18:01:04,318 Instead, use pypa/build, pypa/installer or other 2025-11-17T18:01:04,319 standards-based tools. 2025-11-17T18:01:04,320 This deprecation is overdue, please update your project and remove deprecated 2025-11-17T18:01:04,320 calls to avoid build errors in the future. 2025-11-17T18:01:04,321 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-11-17T18:01:04,322 ******************************************************************************** 2025-11-17T18:01:04,323 !! 2025-11-17T18:01:04,324 self.initialize_options() 2025-11-17T18:01:04,343 installing to build/bdist.linux-armv7l/wheel 2025-11-17T18:01:04,344 running install 2025-11-17T18:01:04,367 running install_lib 2025-11-17T18:01:04,395 creating build/bdist.linux-armv7l/wheel 2025-11-17T18:01:04,397 creating build/bdist.linux-armv7l/wheel/seqmat 2025-11-17T18:01:04,398 copying build/lib/seqmat/__init__.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:01:04,400 copying build/lib/seqmat/transcript.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:01:04,402 copying build/lib/seqmat/seqmat.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:01:04,405 copying build/lib/seqmat/gene.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:01:04,407 copying build/lib/seqmat/utils.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:01:04,410 copying build/lib/seqmat/config.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:01:04,412 copying build/lib/seqmat/cli.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:01:04,415 creating build/bdist.linux-armv7l/wheel/tests 2025-11-17T18:01:04,416 copying build/lib/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./tests 2025-11-17T18:01:04,418 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-11-17T18:01:04,420 copying build/lib/tests/test_seqmat.py -> build/bdist.linux-armv7l/wheel/./tests 2025-11-17T18:01:04,422 running install_egg_info 2025-11-17T18:01:04,459 Copying seqmat.egg-info to build/bdist.linux-armv7l/wheel/./seqmat-0.1.39-py3.11.egg-info 2025-11-17T18:01:04,470 running install_scripts 2025-11-17T18:01:04,484 creating build/bdist.linux-armv7l/wheel/seqmat-0.1.39.dist-info/WHEEL 2025-11-17T18:01:04,486 creating '/tmp/pip-wheel-5eep6dl3/seqmat-0.1.39-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-17T18:01:04,488 adding 'seqmat/__init__.py' 2025-11-17T18:01:04,490 adding 'seqmat/cli.py' 2025-11-17T18:01:04,492 adding 'seqmat/config.py' 2025-11-17T18:01:04,493 adding 'seqmat/gene.py' 2025-11-17T18:01:04,497 adding 'seqmat/seqmat.py' 2025-11-17T18:01:04,499 adding 'seqmat/transcript.py' 2025-11-17T18:01:04,504 adding 'seqmat/utils.py' 2025-11-17T18:01:04,507 adding 'seqmat-0.1.39.dist-info/licenses/LICENSE' 2025-11-17T18:01:04,509 adding 'tests/__init__.py' 2025-11-17T18:01:04,510 adding 'tests/test_gene.py' 2025-11-17T18:01:04,512 adding 'tests/test_seqmat.py' 2025-11-17T18:01:04,515 adding 'seqmat-0.1.39.dist-info/METADATA' 2025-11-17T18:01:04,516 adding 'seqmat-0.1.39.dist-info/WHEEL' 2025-11-17T18:01:04,517 adding 'seqmat-0.1.39.dist-info/entry_points.txt' 2025-11-17T18:01:04,518 adding 'seqmat-0.1.39.dist-info/top_level.txt' 2025-11-17T18:01:04,519 adding 'seqmat-0.1.39.dist-info/RECORD' 2025-11-17T18:01:04,521 removing build/bdist.linux-armv7l/wheel 2025-11-17T18:01:04,636 Building wheel for seqmat (setup.py): finished with status 'done' 2025-11-17T18:01:04,638 Created wheel for seqmat: filename=seqmat-0.1.39-py3-none-any.whl size=41003 sha256=746847a4cc2e79daea5095bc0b378b3e2bfc709ef000648b580e43745243037f 2025-11-17T18:01:04,640 Stored in directory: /tmp/pip-ephem-wheel-cache-0igpqfp_/wheels/a5/f6/9f/1eb28caed400de90ec017c56d0b6b341ab21e3e3a344153eeb 2025-11-17T18:01:04,656 Successfully built seqmat 2025-11-17T18:01:04,660 Removed build tracker: '/tmp/pip-build-tracker-tl5c9235'