2025-11-17T18:44:31,434 Created temporary directory: /tmp/pip-ephem-wheel-cache-cgutvjfm 2025-11-17T18:44:31,436 Created temporary directory: /tmp/pip-build-tracker-sdaxh86h 2025-11-17T18:44:31,437 Initialized build tracking at /tmp/pip-build-tracker-sdaxh86h 2025-11-17T18:44:31,437 Created build tracker: /tmp/pip-build-tracker-sdaxh86h 2025-11-17T18:44:31,438 Entered build tracker: /tmp/pip-build-tracker-sdaxh86h 2025-11-17T18:44:31,439 Created temporary directory: /tmp/pip-wheel-xm90ump0 2025-11-17T18:44:31,442 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-17T18:44:31,444 Created temporary directory: /tmp/pip-ephem-wheel-cache-5nu_4fy8 2025-11-17T18:44:31,467 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-17T18:44:31,470 2 location(s) to search for versions of seqmat: 2025-11-17T18:44:31,470 * https://pypi.org/simple/seqmat/ 2025-11-17T18:44:31,470 * https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:44:31,471 Fetching project page and analyzing links: https://pypi.org/simple/seqmat/ 2025-11-17T18:44:31,472 Getting page https://pypi.org/simple/seqmat/ 2025-11-17T18:44:31,473 Found index url https://pypi.org/simple 2025-11-17T18:44:31,608 Fetched page https://pypi.org/simple/seqmat/ as application/vnd.pypi.simple.v1+json 2025-11-17T18:44:31,623 Skipping link: No binaries permitted for seqmat: 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2025-11-17T18:44:31,641 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/7d/78/24bb0de5b5156807a5c53a57f58ffeb0d8650c8a49941cebf82f8f391434/seqmat-0.1.12-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:44:31,642 Found link https://files.pythonhosted.org/packages/97/36/6d5ae7021375224d55fb5c5bb9d00b0ec08e1d2a0ae02a7ce7c60255c76d/seqmat-0.1.12.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.12 2025-11-17T18:44:31,643 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/50/8e/f6c0423aa6dd717823fb15b08002eb8227ef8a9b4da1e1d452d0e8eff2ac/seqmat-0.1.13-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:44:31,644 Found link https://files.pythonhosted.org/packages/c0/18/6aea9f02e6dc225e6a29802dc4623dc886b4a7ef20cca314e5fde45d75d5/seqmat-0.1.13.tar.gz (from https://pypi.org/simple/seqmat/) 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link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/49/3d/b6170ac7403b851a7d594c44a04756ec742d107eb2b148c4311b228eee55/seqmat-0.1.38-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:44:31,681 Found link https://files.pythonhosted.org/packages/4f/11/01b7e1fb8c724fe188f28dad91bef9b72cbabb015463041886053f3404e6/seqmat-0.1.38.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.38 2025-11-17T18:44:31,682 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/e0/30/d0fa8f8e1b0502621635870a6afacb984997e17f2eb68547eccb0b3a74d6/seqmat-0.1.39-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:44:31,683 Found link https://files.pythonhosted.org/packages/da/8b/454189cc34b7ef764539109eddcf73f00d08e0ceba8e3db61d18d2221364/seqmat-0.1.39.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.39 2025-11-17T18:44:31,683 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/9f/19/1e78d82113efa6570bcf251232c21774545ec8b0713b556dc04126df951b/seqmat-0.1.40-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-11-17T18:44:31,684 Found link https://files.pythonhosted.org/packages/80/3b/46b1d85cc9803bf087ef6db79f8c6607dd101e4263133b0c32e922410312/seqmat-0.1.40.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.40 2025-11-17T18:44:31,685 Fetching project page and analyzing links: https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:44:31,686 Getting page https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:44:31,687 Found index url https://www.piwheels.org/simple 2025-11-17T18:44:31,840 Fetched page https://www.piwheels.org/simple/seqmat/ as text/html 2025-11-17T18:44:31,850 Skipping link: No binaries permitted for seqmat: 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https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.1-py3-none-any.whl#sha256=fa42a4e0b266ac1e13c73a66c7885b3d1c3972eca867f81c739bc3583744f2d8 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-11-17T18:44:31,870 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.0-py3-none-any.whl#sha256=4aac50f8ae8811ac5c12742f14fc069bb3f1181c8175af2941a4a8a1c96bb424 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-11-17T18:44:31,871 Skipping link: not a file: https://www.piwheels.org/simple/seqmat/ 2025-11-17T18:44:31,871 Skipping link: not a file: https://pypi.org/simple/seqmat/ 2025-11-17T18:44:31,894 Given no hashes to check 1 links for project 'seqmat': discarding no candidates 2025-11-17T18:44:31,912 Collecting seqmat==0.1.40 2025-11-17T18:44:31,914 Created temporary directory: /tmp/pip-unpack-zar2r4ia 2025-11-17T18:44:32,120 Downloading seqmat-0.1.40.tar.gz (48 kB) 2025-11-17T18:44:32,234 Added seqmat==0.1.40 from https://files.pythonhosted.org/packages/80/3b/46b1d85cc9803bf087ef6db79f8c6607dd101e4263133b0c32e922410312/seqmat-0.1.40.tar.gz to build tracker '/tmp/pip-build-tracker-sdaxh86h' 2025-11-17T18:44:32,235 Running setup.py (path:/tmp/pip-wheel-xm90ump0/seqmat_efe44a91bf0147139828a026ba94e781/setup.py) egg_info for package seqmat 2025-11-17T18:44:32,236 Created temporary directory: /tmp/pip-pip-egg-info-h9k1xej_ 2025-11-17T18:44:32,237 Preparing metadata (setup.py): started 2025-11-17T18:44:32,238 Running command python setup.py egg_info 2025-11-17T18:44:33,097 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-17T18:44:33,098 !! 2025-11-17T18:44:33,099 ******************************************************************************** 2025-11-17T18:44:33,099 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-17T18:44:33,101 License :: OSI Approved :: MIT License 2025-11-17T18:44:33,102 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-17T18:44:33,102 ******************************************************************************** 2025-11-17T18:44:33,104 !! 2025-11-17T18:44:33,104 self._finalize_license_expression() 2025-11-17T18:44:33,130 running egg_info 2025-11-17T18:44:33,161 creating /tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info 2025-11-17T18:44:33,162 writing /tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/PKG-INFO 2025-11-17T18:44:33,169 writing dependency_links to /tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/dependency_links.txt 2025-11-17T18:44:33,171 writing entry points to /tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/entry_points.txt 2025-11-17T18:44:33,174 writing requirements to /tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/requires.txt 2025-11-17T18:44:33,175 writing top-level names to /tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/top_level.txt 2025-11-17T18:44:33,177 writing manifest file '/tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/SOURCES.txt' 2025-11-17T18:44:33,274 reading manifest file '/tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/SOURCES.txt' 2025-11-17T18:44:33,276 reading manifest template 'MANIFEST.in' 2025-11-17T18:44:33,285 adding license file 'LICENSE' 2025-11-17T18:44:33,289 writing manifest file '/tmp/pip-pip-egg-info-h9k1xej_/seqmat.egg-info/SOURCES.txt' 2025-11-17T18:44:33,396 Preparing metadata (setup.py): finished with status 'done' 2025-11-17T18:44:33,402 Source in /tmp/pip-wheel-xm90ump0/seqmat_efe44a91bf0147139828a026ba94e781 has version 0.1.40, which satisfies requirement seqmat==0.1.40 from https://files.pythonhosted.org/packages/80/3b/46b1d85cc9803bf087ef6db79f8c6607dd101e4263133b0c32e922410312/seqmat-0.1.40.tar.gz 2025-11-17T18:44:33,403 Removed seqmat==0.1.40 from https://files.pythonhosted.org/packages/80/3b/46b1d85cc9803bf087ef6db79f8c6607dd101e4263133b0c32e922410312/seqmat-0.1.40.tar.gz from build tracker '/tmp/pip-build-tracker-sdaxh86h' 2025-11-17T18:44:33,412 Created temporary directory: /tmp/pip-unpack-qxnj7el5 2025-11-17T18:44:33,413 Building wheels for collected packages: seqmat 2025-11-17T18:44:33,419 Created temporary directory: /tmp/pip-wheel-97ba7w_0 2025-11-17T18:44:33,419 Building wheel for seqmat (setup.py): started 2025-11-17T18:44:33,421 Destination directory: /tmp/pip-wheel-97ba7w_0 2025-11-17T18:44:33,421 Running command python setup.py bdist_wheel 2025-11-17T18:44:34,272 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-17T18:44:34,273 !! 2025-11-17T18:44:34,274 ******************************************************************************** 2025-11-17T18:44:34,274 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-17T18:44:34,276 License :: OSI Approved :: MIT License 2025-11-17T18:44:34,277 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-17T18:44:34,277 ******************************************************************************** 2025-11-17T18:44:34,278 !! 2025-11-17T18:44:34,279 self._finalize_license_expression() 2025-11-17T18:44:34,279 running bdist_wheel 2025-11-17T18:44:34,407 running build 2025-11-17T18:44:34,408 running build_py 2025-11-17T18:44:34,440 creating build/lib/seqmat 2025-11-17T18:44:34,442 copying seqmat/__init__.py -> build/lib/seqmat 2025-11-17T18:44:34,444 copying seqmat/transcript.py -> build/lib/seqmat 2025-11-17T18:44:34,447 copying seqmat/seqmat.py -> build/lib/seqmat 2025-11-17T18:44:34,449 copying seqmat/gene.py -> build/lib/seqmat 2025-11-17T18:44:34,451 copying seqmat/utils.py -> build/lib/seqmat 2025-11-17T18:44:34,454 copying seqmat/config.py -> build/lib/seqmat 2025-11-17T18:44:34,457 copying seqmat/cli.py -> build/lib/seqmat 2025-11-17T18:44:34,459 creating build/lib/tests 2025-11-17T18:44:34,460 copying tests/test_gene.py -> build/lib/tests 2025-11-17T18:44:34,463 copying tests/__init__.py -> build/lib/tests 2025-11-17T18:44:34,465 copying tests/test_seqmat.py -> build/lib/tests 2025-11-17T18:44:34,466 running egg_info 2025-11-17T18:44:34,494 writing seqmat.egg-info/PKG-INFO 2025-11-17T18:44:34,500 writing dependency_links to seqmat.egg-info/dependency_links.txt 2025-11-17T18:44:34,502 writing entry points to seqmat.egg-info/entry_points.txt 2025-11-17T18:44:34,505 writing requirements to seqmat.egg-info/requires.txt 2025-11-17T18:44:34,506 writing top-level names to seqmat.egg-info/top_level.txt 2025-11-17T18:44:34,539 reading manifest file 'seqmat.egg-info/SOURCES.txt' 2025-11-17T18:44:34,541 reading manifest template 'MANIFEST.in' 2025-11-17T18:44:34,548 adding license file 'LICENSE' 2025-11-17T18:44:34,551 writing manifest file 'seqmat.egg-info/SOURCES.txt' 2025-11-17T18:44:34,582 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-11-17T18:44:34,583 !! 2025-11-17T18:44:34,584 ******************************************************************************** 2025-11-17T18:44:34,585 Please avoid running ``setup.py`` directly. 2025-11-17T18:44:34,585 Instead, use pypa/build, pypa/installer or other 2025-11-17T18:44:34,586 standards-based tools. 2025-11-17T18:44:34,587 This deprecation is overdue, please update your project and remove deprecated 2025-11-17T18:44:34,587 calls to avoid build errors in the future. 2025-11-17T18:44:34,589 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-11-17T18:44:34,589 ******************************************************************************** 2025-11-17T18:44:34,590 !! 2025-11-17T18:44:34,591 self.initialize_options() 2025-11-17T18:44:34,610 installing to build/bdist.linux-armv7l/wheel 2025-11-17T18:44:34,611 running install 2025-11-17T18:44:34,635 running install_lib 2025-11-17T18:44:34,663 creating build/bdist.linux-armv7l/wheel 2025-11-17T18:44:34,665 creating build/bdist.linux-armv7l/wheel/seqmat 2025-11-17T18:44:34,666 copying build/lib/seqmat/__init__.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:44:34,668 copying build/lib/seqmat/transcript.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:44:34,670 copying build/lib/seqmat/seqmat.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:44:34,673 copying build/lib/seqmat/gene.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:44:34,675 copying build/lib/seqmat/utils.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:44:34,678 copying build/lib/seqmat/config.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:44:34,680 copying build/lib/seqmat/cli.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-11-17T18:44:34,683 creating build/bdist.linux-armv7l/wheel/tests 2025-11-17T18:44:34,684 copying build/lib/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./tests 2025-11-17T18:44:34,686 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-11-17T18:44:34,688 copying build/lib/tests/test_seqmat.py -> build/bdist.linux-armv7l/wheel/./tests 2025-11-17T18:44:34,690 running install_egg_info 2025-11-17T18:44:34,726 Copying seqmat.egg-info to build/bdist.linux-armv7l/wheel/./seqmat-0.1.40-py3.11.egg-info 2025-11-17T18:44:34,738 running install_scripts 2025-11-17T18:44:34,751 creating build/bdist.linux-armv7l/wheel/seqmat-0.1.40.dist-info/WHEEL 2025-11-17T18:44:34,753 creating '/tmp/pip-wheel-97ba7w_0/seqmat-0.1.40-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-17T18:44:34,755 adding 'seqmat/__init__.py' 2025-11-17T18:44:34,757 adding 'seqmat/cli.py' 2025-11-17T18:44:34,759 adding 'seqmat/config.py' 2025-11-17T18:44:34,760 adding 'seqmat/gene.py' 2025-11-17T18:44:34,764 adding 'seqmat/seqmat.py' 2025-11-17T18:44:34,766 adding 'seqmat/transcript.py' 2025-11-17T18:44:34,771 adding 'seqmat/utils.py' 2025-11-17T18:44:34,774 adding 'seqmat-0.1.40.dist-info/licenses/LICENSE' 2025-11-17T18:44:34,776 adding 'tests/__init__.py' 2025-11-17T18:44:34,777 adding 'tests/test_gene.py' 2025-11-17T18:44:34,779 adding 'tests/test_seqmat.py' 2025-11-17T18:44:34,782 adding 'seqmat-0.1.40.dist-info/METADATA' 2025-11-17T18:44:34,783 adding 'seqmat-0.1.40.dist-info/WHEEL' 2025-11-17T18:44:34,784 adding 'seqmat-0.1.40.dist-info/entry_points.txt' 2025-11-17T18:44:34,785 adding 'seqmat-0.1.40.dist-info/top_level.txt' 2025-11-17T18:44:34,786 adding 'seqmat-0.1.40.dist-info/RECORD' 2025-11-17T18:44:34,787 removing build/bdist.linux-armv7l/wheel 2025-11-17T18:44:34,903 Building wheel for seqmat (setup.py): finished with status 'done' 2025-11-17T18:44:34,905 Created wheel for seqmat: filename=seqmat-0.1.40-py3-none-any.whl size=41002 sha256=ffd424f7dc19f7dd80ba05f5d2dbcea7ef63faac83f576ea63e115ecf9af4d56 2025-11-17T18:44:34,907 Stored in directory: /tmp/pip-ephem-wheel-cache-5nu_4fy8/wheels/03/67/f3/acd798165f93370819c67c699ce73b3c09304627362be4a746 2025-11-17T18:44:34,923 Successfully built seqmat 2025-11-17T18:44:34,927 Removed build tracker: '/tmp/pip-build-tracker-sdaxh86h'