2025-11-18T10:38:27,293 Created temporary directory: /tmp/pip-ephem-wheel-cache-1yk0m4m_
2025-11-18T10:38:27,295 Created temporary directory: /tmp/pip-build-tracker-61gw3dwt
2025-11-18T10:38:27,296 Initialized build tracking at /tmp/pip-build-tracker-61gw3dwt
2025-11-18T10:38:27,296 Created build tracker: /tmp/pip-build-tracker-61gw3dwt
2025-11-18T10:38:27,297 Entered build tracker: /tmp/pip-build-tracker-61gw3dwt
2025-11-18T10:38:27,298 Created temporary directory: /tmp/pip-wheel-ydvapami
2025-11-18T10:38:27,301 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-18T10:38:27,303 Created temporary directory: /tmp/pip-ephem-wheel-cache-kwway3nw
2025-11-18T10:38:27,325 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-18T10:38:27,329 2 location(s) to search for versions of scipion-em-xmipp:
2025-11-18T10:38:27,329 * https://pypi.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,329 * https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,330 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,331 Getting page https://pypi.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,332 Found index url https://pypi.org/simple
2025-11-18T10:38:27,544 Fetched page https://pypi.org/simple/scipion-em-xmipp/ as application/vnd.pypi.simple.v1+json
2025-11-18T10:38:27,559   Found link https://files.pythonhosted.org/packages/ac/e8/0b29e46431aa1223befa2a698d198863c12304274306b16832cfd454e3f9/scipion-em-xmipp-1.0.0a1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0a1
2025-11-18T10:38:27,560   Found link https://files.pythonhosted.org/packages/c8/3c/1eeb9eaf268f2d4bcf115f9048a58a4d7b5443203d1c6400be6931719924/scipion-em-xmipp-1.0.0b1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 1.0.0b1
2025-11-18T10:38:27,561   Found link https://files.pythonhosted.org/packages/27/04/5659119b2d4622b274555e6175dec47a4dca6dc7eba56bc469bbadac71a3/scipion-em-xmipp-19.3b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3b0
2025-11-18T10:38:27,561   Found link https://files.pythonhosted.org/packages/3a/d9/3171cd2d43aa40510db86a86ed766d314f549f4583119548e538ae97444f/scipion-em-xmipp-19.3.1b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.1b0
2025-11-18T10:38:27,562   Found link https://files.pythonhosted.org/packages/50/7c/87e8f5031f14f5daf04b3a77e5018028c4d47325635d683428fbe478e719/scipion-em-xmipp-19.3.2b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.2b0
2025-11-18T10:38:27,563   Found link https://files.pythonhosted.org/packages/02/10/513a51ad147a24e33797b5114b67e98038390b70cc17df25a7191d468134/scipion-em-xmipp-19.3.3b0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b0
2025-11-18T10:38:27,564   Found link https://files.pythonhosted.org/packages/8f/92/d59d3d7361e247fb3d74ffe5920f7353b38a3a051f91d6b9bf6357581fe9/scipion-em-xmipp-19.3.3b2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b2
2025-11-18T10:38:27,565   Found link https://files.pythonhosted.org/packages/30/cc/45f5761a8c4f656881dbe55c351a268bcbdfd9ca9d159900755848ecd657/scipion-em-xmipp-19.3.3b3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b3
2025-11-18T10:38:27,565   Found link https://files.pythonhosted.org/packages/13/53/fd16ab9eff7bc97c50fcab52ecff83523239910c2da6717d84def4678bc5/scipion-em-xmipp-19.3.3b4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b4
2025-11-18T10:38:27,566   Found link https://files.pythonhosted.org/packages/9e/74/457d5668fef263b681b8e0166a4d82010d7cad5837bb6ddd43fecb7ecf47/scipion-em-xmipp-19.3.3b5.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b5
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2025-11-18T10:38:27,568   Found link https://files.pythonhosted.org/packages/23/da/189566d17133de5827f7850766cde4176f6845b63f0b5c485b2306753307/scipion-em-xmipp-19.3.3b7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.3.3b7
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2025-11-18T10:38:27,569   Found link https://files.pythonhosted.org/packages/b8/12/cd3ddb5a1d8aa235c8791e2b230b121477d3bc5ee63792d8d7e66738d835/scipion-em-xmipp-19.4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4
2025-11-18T10:38:27,570   Found link https://files.pythonhosted.org/packages/c0/5b/4ecca6d5dbc925ec19ce98bd3e76b2459be8efd280241cab17f57b7b8bf1/scipion-em-xmipp-19.4.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.1
2025-11-18T10:38:27,570   Found link https://files.pythonhosted.org/packages/78/a5/013710e0192dc4d8312b06b17c393d9ae01ee6370fac5c0374ab0f99d540/scipion-em-xmipp-19.4.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.2
2025-11-18T10:38:27,571   Found link https://files.pythonhosted.org/packages/8a/e5/2a7960924fff02c71b3af6308001de11cf4d754db3355562692aa7fc4186/scipion-em-xmipp-19.4.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 19.4.3
2025-11-18T10:38:27,572   Found link https://files.pythonhosted.org/packages/52/ed/b56f4f2e007e7ca794764ed4afcac73e606572df741b4b7e5351d079d3a7/scipion-em-xmipp-20.7a0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a0
2025-11-18T10:38:27,572   Found link https://files.pythonhosted.org/packages/e9/91/2898f8c10bd384d539971596cb921f0b0a4f634aaac12f7f19a757cd678d/scipion-em-xmipp-20.7a1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a1
2025-11-18T10:38:27,573   Found link https://files.pythonhosted.org/packages/9f/39/174135aff5c22a469eaf698e5fd714c5459420de3e293f5277218afd09df/scipion-em-xmipp-20.7a2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a2
2025-11-18T10:38:27,574   Found link https://files.pythonhosted.org/packages/e7/b3/7f5ad38626efef9dd54836f2ee1348af78faf9d066f96f98fd84f027ff09/scipion-em-xmipp-20.7a3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a3
2025-11-18T10:38:27,575   Found link https://files.pythonhosted.org/packages/44/c0/d1503a132e26d05c8dcfed83e592a394e8c5ac803ac60850bd2213c2a993/scipion-em-xmipp-20.7a4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a4
2025-11-18T10:38:27,576   Found link https://files.pythonhosted.org/packages/7a/73/c2a026a983021b3d0e91fef78139351a17cf991d00ef0e5c94207c4142fd/scipion-em-xmipp-20.7a5.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a5
2025-11-18T10:38:27,576   Found link https://files.pythonhosted.org/packages/bf/19/d8f24d55b90ec6a8f113f36c718cf18ae1e5f037244d6b3eea34d52f0698/scipion-em-xmipp-20.7a6.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a6
2025-11-18T10:38:27,577   Found link https://files.pythonhosted.org/packages/94/eb/3c90ecf9b9ed73081e47f1f7b89c69b9f27dc671cfbd9e5d8ddbe74e504a/scipion-em-xmipp-20.7a7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a7
2025-11-18T10:38:27,578   Found link https://files.pythonhosted.org/packages/9f/04/28714f70cf8f620fdaf8b7352646dc56167d6fd68fd7d1c2d018d6e14881/scipion-em-xmipp-20.7a8.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a8
2025-11-18T10:38:27,578   Found link https://files.pythonhosted.org/packages/b0/3b/adc47a380165d5ead9fb40a6ed2207b1ba535a61c584893eb2498abc9df4/scipion-em-xmipp-20.7a9.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7a9
2025-11-18T10:38:27,579   Found link https://files.pythonhosted.org/packages/91/eb/d5eb411231b951e009d79e31b52fb1b33e7e45d5f9c2f61d30dc17d7243f/scipion-em-xmipp-20.7b1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7b1
2025-11-18T10:38:27,580   Found link https://files.pythonhosted.org/packages/d8/a1/47793f263b8c63001cf71784ef106a824a418992b86e107369b11831ac40/scipion-em-xmipp-20.7rc0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc0
2025-11-18T10:38:27,581   Found link https://files.pythonhosted.org/packages/8d/8b/9a1165d1cdd43775891cee272edd06ff863dbc5750b52698a5c679025b71/scipion-em-xmipp-20.7rc1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc1
2025-11-18T10:38:27,582   Found link https://files.pythonhosted.org/packages/fd/9e/356da427dc4ff0203f2ce772d1342b9157862c4ac8d7570ba999370ce5a6/scipion-em-xmipp-20.7rc2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7rc2
2025-11-18T10:38:27,582   Found link https://files.pythonhosted.org/packages/4b/91/7ab3cd278a2dd956697fed5360ec4bd7adc60bf09e9dfd5e81ad84138094/scipion-em-xmipp-20.7.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7
2025-11-18T10:38:27,583   Found link https://files.pythonhosted.org/packages/9f/93/9d7fe8e98125a90c270231da6e953e9479571bba3178a2ce0aec2275e4e1/scipion-em-xmipp-20.7.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.1
2025-11-18T10:38:27,583   Found link https://files.pythonhosted.org/packages/f7/17/ef967680746c66261fd9194a975f3aa637ce669f1476d569c71cf00a668a/scipion-em-xmipp-20.7.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.2
2025-11-18T10:38:27,584   Found link https://files.pythonhosted.org/packages/cc/65/41cab65b454b1dbad052705a98f73713d3b194679fe775fe0e0b5162c870/scipion-em-xmipp-20.7.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.3
2025-11-18T10:38:27,585   Found link https://files.pythonhosted.org/packages/de/a7/8b5a5a1d098004909c0b3718b50e50e3fb807b8894c725196c432ddf743e/scipion-em-xmipp-20.7.4.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 20.7.4
2025-11-18T10:38:27,586   Found link https://files.pythonhosted.org/packages/30/56/fb7770e78e0497916e99ae018b9ecfb8562c44573ae01b516b1f67111bee/scipion-em-xmipp-21.6.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 21.6.1
2025-11-18T10:38:27,586   Found link https://files.pythonhosted.org/packages/aa/05/fa0cf1c45ae8217b88b7b0b6beb2b1a6cde9a707f1d3e0041d480d369d16/scipion-em-xmipp-21.9.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 21.9.0
2025-11-18T10:38:27,587   Found link https://files.pythonhosted.org/packages/d1/c2/a9ce741e455c38d13caeb7afa5e7d789abc3e651145758154ba11e4b7ae2/scipion-em-xmipp-22.1.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.1.0
2025-11-18T10:38:27,588   Found link https://files.pythonhosted.org/packages/d9/58/d56a9d6ff442a61dda76b90468d96e88cc7f90d0bb5949e60a990ff0d222/scipion-em-xmipp-22.4.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.4.0
2025-11-18T10:38:27,589   Found link https://files.pythonhosted.org/packages/6b/f1/ba22bb0f99b140d9ed6719988feeea6655435732717a818c115dd7956336/scipion-em-xmipp-22.7.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.7.0
2025-11-18T10:38:27,589   Found link https://files.pythonhosted.org/packages/b5/40/30c9fa41a55b82a2f0ffacb492238cf31fa078c3460bc3af4e234168ef3a/scipion-em-xmipp-22.7.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.7.0.1
2025-11-18T10:38:27,590   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/05/89/04edc1c3a844b63c761bfe040d5a736b75790e666140d0cbb75026a73f99/scipion_em_xmipp-22.7.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,591   Found link https://files.pythonhosted.org/packages/28/3f/cae77a54756c2d6e5e1194e1d9fc1a3d9c4358c0d3fb91b810b01acac795/scipion-em-xmipp-22.11.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.0
2025-11-18T10:38:27,592   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/b6/d7/46df8c1d4a69c61fb855f39c16fe22b64aef127402689b1b9775d5fef8c5/scipion_em_xmipp-22.11.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,593   Found link https://files.pythonhosted.org/packages/44/de/28fda7563cbf52139e73144cf875accb364668c89f32fbba13823ac08cc6/scipion-em-xmipp-22.11.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.1
2025-11-18T10:38:27,593   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/fc/2e/58376602d91e508a32b6d296125b4710cdeaf1452870350a1e47e3c1eb0a/scipion_em_xmipp-22.11.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,594   Found link https://files.pythonhosted.org/packages/fa/2c/0e40ab89093227353ce28d4569016c050188a75b7c4fd319e14a6c9464bf/scipion-em-xmipp-22.11.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 22.11.0.2
2025-11-18T10:38:27,594   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/d0/93/33cd393b1b08753546dd9e03b3a717239d6ee2e72659b982816e68065d09/scipion_em_xmipp-22.11.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,595   Found link https://files.pythonhosted.org/packages/ff/01/69dbd2d65d7a36546cab3d73332094923714d78358083a5c128cd2cc5a95/scipion-em-xmipp-23.3.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.0
2025-11-18T10:38:27,596   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/06/09/df9dae8a63e0bc118b3752d55eaa23a9488b73d4a7b0842b73022f66c12a/scipion_em_xmipp-23.3.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,597   Found link https://files.pythonhosted.org/packages/12/12/c7f9bb4e4033fca462ba95d480f2b4d0a6bb5449e3c32ff7557204ae9e4a/scipion-em-xmipp-23.3.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.1
2025-11-18T10:38:27,597   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/96/b5/29fc82e53cb44590b141f59582152a0b506c993f0788be4471684ec5f02c/scipion_em_xmipp-23.3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,598   Found link https://files.pythonhosted.org/packages/2e/c6/dc675f99b407685ae55c5677f65e6d75f554051916a1248b25a848fef915/scipion-em-xmipp-23.3.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.2
2025-11-18T10:38:27,598   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/c6/e0/2b882b8a45cabdfbe7f14d3c88ebe3641319cbe83ef5e7551c7094e99664/scipion_em_xmipp-23.3.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,599   Found link https://files.pythonhosted.org/packages/90/5f/c90a6c5e3135c917a405eb1ca33eb1d964a7990d929b6c04d30088f25de8/scipion-em-xmipp-23.3.0.3.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.3.0.3
2025-11-18T10:38:27,600   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/3f/c9/f24bbd58c9813a58c2e3508de9e6ee57b1d77e9f3688efe637056c337bf9/scipion_em_xmipp-23.3.0.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,600   Found link https://files.pythonhosted.org/packages/88/80/e4c6257566147cd0f156d98966aec432f69a2e3eb811c4a7cb277a640fe0/scipion-em-xmipp-23.7.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.7.0.0
2025-11-18T10:38:27,601   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/14/f5/d567084d746df5ac85c40ed32598bf8e6d94ceda86b7f4d388912e2fd54f/scipion_em_xmipp-23.7.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,602   Found link https://files.pythonhosted.org/packages/30/d5/1bda8372a43956e91dae7a96e782b1011269097d638abae70825edca9f42/scipion-em-xmipp-23.11.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.11.0.0
2025-11-18T10:38:27,602   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/50/e9/da76f93acf09261cc2c6d201ac8d4fea6cfa183effbbf4353027fd9a523d/scipion_em_xmipp-23.11.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,603   Found link https://files.pythonhosted.org/packages/ee/16/77d7958eb37d59013b0797cef20a107f6cbcc5ca395a2baf2eeebdd0e871/scipion-em-xmipp-23.11.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 23.11.0.1
2025-11-18T10:38:27,603   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/3c/c8/ed4b6aadb9633b540b6e9346770f9f91720d2d29e235429498ab07df8d61/scipion_em_xmipp-23.11.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,604   Found link https://files.pythonhosted.org/packages/f7/31/a0154ef1de37fcd44f21df54dce1bcd0ce424343407d59bd13d88399ffdd/scipion-em-xmipp-24.6.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 24.6.0.0
2025-11-18T10:38:27,605   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/63/b2/5ca583d8073d12fa9f058fc6dc2b94b3c23a047e7a53c070f00d45a99e5d/scipion_em_xmipp-24.6.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,605   Found link https://files.pythonhosted.org/packages/8e/59/1b8f32e2023baa544de460d57507b0b5de40fdae1b93ea7d10bcb3506a9b/scipion-em-xmipp-24.12.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/), version: 24.12.2
2025-11-18T10:38:27,606   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/4c/5d/b29ccdf2fdf9494d9b00b8cfca920942f3b214d9b0c8d70132801662927f/scipion_em_xmipp-24.12.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,606   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/c1/bf/cc86765cd150ff54b602b134f896a19b64421cd47a15e0ceb66dbe1b09de/scipion_em_xmipp-25.6.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,607   Found link https://files.pythonhosted.org/packages/1e/05/167b0a1d8068aee3fbf4f8ffc35e5a1502b498e838be1740ef2021339fef/scipion_em_xmipp-25.6.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 25.6.0
2025-11-18T10:38:27,608   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/7a/b5/a22cb3670513caa0624ef548caa0554aea711949d4f38d6bbde3cdb8560b/scipion_em_xmipp-25.6.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,609   Found link https://files.pythonhosted.org/packages/c1/50/f384e19d33b6a6cf39ae16afa1bc890a66ad8c03100e89228518fad0002e/scipion_em_xmipp-25.6.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 25.6.1
2025-11-18T10:38:27,610   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/e5/98/8143dd6ccebf3ff2798a69e361c03a08a85ad63b2e7978e3d7314b63b5d4/scipion_em_xmipp-26.0.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,611   Found link https://files.pythonhosted.org/packages/04/c5/1b430c39044634fccdcc06d491953043bc19b1c0e3ff27fd492c45ce5e9f/scipion_em_xmipp-26.0.0.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.0
2025-11-18T10:38:27,611   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/de/67/938bbc9118052615cdc205c07f93495aa59478a84d6aedbf2d7517c86547/scipion_em_xmipp-26.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,612   Found link https://files.pythonhosted.org/packages/7b/92/3c6ab9e66f5527444a60372e642424c5132687b17db8e0d7cea81c0b859f/scipion_em_xmipp-26.0.1.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.1
2025-11-18T10:38:27,613   Skipping link: No binaries permitted for scipion-em-xmipp: https://files.pythonhosted.org/packages/fd/2f/9e5e93577db279ff1f27d7a6c549d1f63b608d58d7647988aa09d80cd82a/scipion_em_xmipp-26.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,614   Found link https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz (from https://pypi.org/simple/scipion-em-xmipp/) (requires-python:>=3.8), version: 26.0.2
2025-11-18T10:38:27,615 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,615 Getting page https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,617 Found index url https://www.piwheels.org/simple
2025-11-18T10:38:27,790 Fetched page https://www.piwheels.org/simple/scipion-em-xmipp/ as text/html
2025-11-18T10:38:27,800   Skipping link: No binaries permitted for scipion-em-xmipp: https://www.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-26.0.1-py3-none-any.whl#sha256=cdaf6d4c7a56851b5454ae7a87c4b94bf84acf0a5c420012aeaeb685605ead72 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,801   Skipping link: No binaries permitted for scipion-em-xmipp: https://www.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-26.0.0-py3-none-any.whl#sha256=b4e9e8f91fa83d476d1d9620396f5ab5f28708c500fcb28834da13f810c5cdd1 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,801   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-25.6.1-py3-none-any.whl#sha256=e9e0354c63ae8258705005ccdbfb27a7cd7c1d660e53720ec52d7bec9949c716 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,802   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-25.6.0-py3-none-any.whl#sha256=a8ccd10f0a2355ebed5a8dc0b88fb5e2287546990418ac116c382769fe83b5e3 (from https://www.piwheels.org/simple/scipion-em-xmipp/) (requires-python:>=3.8)
2025-11-18T10:38:27,803   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.3-py3-none-any.whl#sha256=ea77b5ac2a36d9901112289b002af371e3edde22d086a8b235e0e183efcbd5a1 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,804   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.2-py3-none-any.whl#sha256=a70bf8f019159fd571f91a44386526735eae928603b34595012e06a0e1c21402 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,805   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4.1-py3-none-any.whl#sha256=faa5b9a08d80d53471eb4e1f6d39c0aefe670b40f4afef52d1beeaab0e023df4 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,805   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.4-py3-none-any.whl#sha256=78b3ad6e93c4bf5109c6f2ab00c6520ed4588e54e09e12eb3d7d452848a36bf9 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,806   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b8-py3-none-any.whl#sha256=eeb1d3f9855d002deb07c4eedb6e1ad89779db86dbcfec3d04ee8e03385c0df5 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,807   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b7-py3-none-any.whl#sha256=9b5a7d175d0662fb4b210ece019e2d38397f02a8d1c5adf51442cd6dc77c0a52 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,808   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b6-py3-none-any.whl#sha256=2d45787d6e69a1317464b855967853e3ac7a22b3b27f17e8a636753040a93035 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,808   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b5-py3-none-any.whl#sha256=a60f524330ca169f9e3c15f5c35c00b8d0144fbfa2127fd8172ecbf45a823680 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,809   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b4-py3-none-any.whl#sha256=d419905e626e6790ed00972938fb269e5be969b77ac02c2ec581431c14ca9c06 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,810   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b3-py3-none-any.whl#sha256=937521bdd7ccf2f2b88c1d6a1c9e70265dc1efd65495c57d291ae560bebdd535 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,810   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b2-py3-none-any.whl#sha256=dc34830c4791cef76913516e175f6c69d921dd26db0b2c11395e64bcfff4354e (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,811   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,812   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,812   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,813   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,814   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,815   Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/)
2025-11-18T10:38:27,815 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,816 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/
2025-11-18T10:38:27,844 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates
2025-11-18T10:38:27,862 Collecting scipion-em-xmipp==26.0.2
2025-11-18T10:38:27,865   Created temporary directory: /tmp/pip-unpack-dlq425f0
2025-11-18T10:38:28,080   Downloading scipion_em_xmipp-26.0.2.tar.gz (1.5 MB)
2025-11-18T10:38:29,024   Added scipion-em-xmipp==26.0.2 from https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-61gw3dwt'
2025-11-18T10:38:29,028   Created temporary directory: /tmp/pip-build-env-66u7_vcf
2025-11-18T10:38:29,033   Installing build dependencies: started
2025-11-18T10:38:29,034   Running command pip subprocess to install build dependencies
2025-11-18T10:38:30,206   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-11-18T10:38:30,862   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-18T10:38:30,885   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-18T10:38:32,599   Collecting setuptools
2025-11-18T10:38:32,721     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-11-18T10:38:35,613   Installing collected packages: setuptools
2025-11-18T10:38:39,402   Successfully installed setuptools-80.9.0
2025-11-18T10:38:39,687   Installing build dependencies: finished with status 'done'
2025-11-18T10:38:39,694   Getting requirements to build wheel: started
2025-11-18T10:38:39,695   Running command Getting requirements to build wheel
2025-11-18T10:38:40,314   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-18T10:38:40,315   `flat-layout` detected -- analysing .
2025-11-18T10:38:40,340   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch']
2025-11-18T10:38:40,345   /tmp/pip-build-env-66u7_vcf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-18T10:38:40,345   !!

2025-11-18T10:38:40,346           ********************************************************************************
2025-11-18T10:38:40,347           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-18T10:38:40,349           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-18T10:38:40,349           or your builds will no longer be supported.

2025-11-18T10:38:40,350           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-18T10:38:40,351           ********************************************************************************

2025-11-18T10:38:40,352   !!
2025-11-18T10:38:40,352     corresp(dist, value, root_dir)
2025-11-18T10:38:40,443   running egg_info
2025-11-18T10:38:40,450   writing scipion_em_xmipp.egg-info/PKG-INFO
2025-11-18T10:38:40,453   writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-18T10:38:40,455   writing entry points to scipion_em_xmipp.egg-info/entry_points.txt
2025-11-18T10:38:40,458   writing requirements to scipion_em_xmipp.egg-info/requires.txt
2025-11-18T10:38:40,459   writing top-level names to scipion_em_xmipp.egg-info/top_level.txt
2025-11-18T10:38:40,505   reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-18T10:38:40,520   reading manifest template 'MANIFEST.in'
2025-11-18T10:38:40,523   adding license file 'LICENSE'
2025-11-18T10:38:40,537   writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-18T10:38:40,635   Getting requirements to build wheel: finished with status 'done'
2025-11-18T10:38:40,639   Created temporary directory: /tmp/pip-modern-metadata-me4floi6
2025-11-18T10:38:40,641   Preparing metadata (pyproject.toml): started
2025-11-18T10:38:40,642   Running command Preparing metadata (pyproject.toml)
2025-11-18T10:38:41,205   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-18T10:38:41,205   `flat-layout` detected -- analysing .
2025-11-18T10:38:41,224   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch']
2025-11-18T10:38:41,228   /tmp/pip-build-env-66u7_vcf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-18T10:38:41,229   !!

2025-11-18T10:38:41,230           ********************************************************************************
2025-11-18T10:38:41,230           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-18T10:38:41,231           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-18T10:38:41,232           or your builds will no longer be supported.

2025-11-18T10:38:41,233           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-18T10:38:41,233           ********************************************************************************

2025-11-18T10:38:41,235   !!
2025-11-18T10:38:41,235     corresp(dist, value, root_dir)
2025-11-18T10:38:41,327   running dist_info
2025-11-18T10:38:41,339   creating /tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info
2025-11-18T10:38:41,340   writing /tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/PKG-INFO
2025-11-18T10:38:41,344   writing dependency_links to /tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-18T10:38:41,346   writing entry points to /tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/entry_points.txt
2025-11-18T10:38:41,348   writing requirements to /tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/requires.txt
2025-11-18T10:38:41,350   writing top-level names to /tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/top_level.txt
2025-11-18T10:38:41,352   writing manifest file '/tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-18T10:38:41,398   reading manifest file '/tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-18T10:38:41,400   reading manifest template 'MANIFEST.in'
2025-11-18T10:38:41,403   adding license file 'LICENSE'
2025-11-18T10:38:41,413   writing manifest file '/tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-18T10:38:41,415   creating '/tmp/pip-modern-metadata-me4floi6/scipion_em_xmipp-26.0.2.dist-info'
2025-11-18T10:38:41,542   Preparing metadata (pyproject.toml): finished with status 'done'
2025-11-18T10:38:41,547   Source in /tmp/pip-wheel-ydvapami/scipion-em-xmipp_55d0adac90c848d88e2d38c6a4b663fa has version 26.0.2, which satisfies requirement scipion-em-xmipp==26.0.2 from https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz
2025-11-18T10:38:41,548   Removed scipion-em-xmipp==26.0.2 from https://files.pythonhosted.org/packages/7d/5d/c9de1cb42db2cef7b4301f748b1fa3eea7895a0d678af03f4824b15b0e5a/scipion_em_xmipp-26.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-61gw3dwt'
2025-11-18T10:38:41,553 Created temporary directory: /tmp/pip-unpack-diqpgezy
2025-11-18T10:38:41,554 Building wheels for collected packages: scipion-em-xmipp
2025-11-18T10:38:41,559   Created temporary directory: /tmp/pip-wheel-rmqa4yth
2025-11-18T10:38:41,560   Destination directory: /tmp/pip-wheel-rmqa4yth
2025-11-18T10:38:41,562   Building wheel for scipion-em-xmipp (pyproject.toml): started
2025-11-18T10:38:41,563   Running command Building wheel for scipion-em-xmipp (pyproject.toml)
2025-11-18T10:38:42,105   No `packages` or `py_modules` configuration, performing automatic discovery.
2025-11-18T10:38:42,105   `flat-layout` detected -- analysing .
2025-11-18T10:38:42,124   discovered packages -- ['xmipp3', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.viewers', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.legacy.viewers', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch']
2025-11-18T10:38:42,129   /tmp/pip-build-env-66u7_vcf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-11-18T10:38:42,129   !!

2025-11-18T10:38:42,130           ********************************************************************************
2025-11-18T10:38:42,131           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-11-18T10:38:42,132           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-11-18T10:38:42,132           or your builds will no longer be supported.

2025-11-18T10:38:42,133           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-11-18T10:38:42,134           ********************************************************************************

2025-11-18T10:38:42,135   !!
2025-11-18T10:38:42,135     corresp(dist, value, root_dir)
2025-11-18T10:38:42,210   running bdist_wheel
2025-11-18T10:38:42,231   running build
2025-11-18T10:38:42,232   running build_py
2025-11-18T10:38:42,239   creating build/lib/xmipp3
2025-11-18T10:38:42,241   copying xmipp3/constants.py -> build/lib/xmipp3
2025-11-18T10:38:42,243   copying xmipp3/bibtex.py -> build/lib/xmipp3
2025-11-18T10:38:42,246   copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3
2025-11-18T10:38:42,249   copying xmipp3/wizards.py -> build/lib/xmipp3
2025-11-18T10:38:42,251   copying xmipp3/base.py -> build/lib/xmipp3
2025-11-18T10:38:42,254   copying xmipp3/logParser.py -> build/lib/xmipp3
2025-11-18T10:38:42,256   copying xmipp3/utils.py -> build/lib/xmipp3
2025-11-18T10:38:42,259   copying xmipp3/__init__.py -> build/lib/xmipp3
2025-11-18T10:38:42,261   copying xmipp3/version.py -> build/lib/xmipp3
2025-11-18T10:38:42,263   copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3
2025-11-18T10:38:42,266   copying xmipp3/programs.py -> build/lib/xmipp3
2025-11-18T10:38:42,269   creating build/lib/xmipp3/convert
2025-11-18T10:38:42,270   copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert
2025-11-18T10:38:42,272   copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert
2025-11-18T10:38:42,275   copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert
2025-11-18T10:38:42,277   copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert
2025-11-18T10:38:42,280   creating build/lib/xmipp3/legacy
2025-11-18T10:38:42,281   copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy
2025-11-18T10:38:42,284   creating build/lib/xmipp3/viewers
2025-11-18T10:38:42,286   copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,288   copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,291   copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,293   copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,295   copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,298   copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,300   copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,302   copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,304   copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,306   copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,309   copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,311   copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,313   copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,315   copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,318   copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,320   copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,322   copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,324   copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,326   copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,329   copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,331   copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,333   copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,335   copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,338   copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,340   copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,342   copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,345   copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,348   copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,350   copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,353   copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,356   copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,358   copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,360   copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,363   copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,365   copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,368   copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,370   copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,372   copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,374   copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,377   copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers
2025-11-18T10:38:42,382   creating build/lib/xmipp3/protocols
2025-11-18T10:38:42,383   copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,386   copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,389   copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,392   copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,394   copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,397   copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,399   copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,402   copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,404   copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,407   copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,410   copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,412   copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,414   copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,416   copying xmipp3/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,418   copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,421   copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,424   copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,426   copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,429   copying xmipp3/protocols/protocol_classify_pca_streaming.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,431   copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,434   copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,436   copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,439   copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,442   copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,444   copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,447   copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,452   copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,454   copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,457   copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,459   copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,462   copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,464   copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,467   copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,469   copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,472   copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,474   copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,477   copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,479   copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,482   copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,484   copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,486   copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,489   copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,492   copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,494   copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,497   copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,500   copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,502   copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,505   copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,507   copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,510   copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,512   copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,515   copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,517   copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,519   copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,522   copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,524   copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,527   copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,529   copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,532   copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,534   copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,537   copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,540   copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,543   copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,545   copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,549   copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,552   copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,554   copying xmipp3/protocols/protocol_classify_pca.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,557   copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,559   copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,562   copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,564   copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,567   copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,569   copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,572   copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,574   copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,577   copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,579   copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,582   copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,586   copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,590   copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,593   copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,596   copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,601   copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,604   copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,608   copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,612   copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,615   copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,617   copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,620   copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,622   copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,625   copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,627   copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,630   copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,632   copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,634   copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,637   copying xmipp3/protocols/protocol_deep_center.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,639   copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,642   copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,644   copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols
2025-11-18T10:38:42,649   creating build/lib/xmipp3/tests
2025-11-18T10:38:42,650   copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,652   copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,655   copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,657   copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,659   copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,662   copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,665   copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,669   copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,674   copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,684   copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,693   copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,696   copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,703   copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,705   copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,708   copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,711   copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,713   copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,717   copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,719   copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,721   copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,724   copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,727   copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,730   copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,732   copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,735   copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,740   copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,742   copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,745   copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,747   copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,749   copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,752   copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,754   copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,759   copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,761   copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,764   copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests
2025-11-18T10:38:42,766   creating build/lib/xmipp3/legacy/viewers
2025-11-18T10:38:42,767   copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers
2025-11-18T10:38:42,770   copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers
2025-11-18T10:38:42,772   copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers
2025-11-18T10:38:42,775   copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers
2025-11-18T10:38:42,778   copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers
2025-11-18T10:38:42,780   copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers
2025-11-18T10:38:42,784   creating build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,785   copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,788   copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,793   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,799   copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,803   copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,807   copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,810   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,812   copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,816   copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,818   copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,821   copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,824   copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,827   copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,829   copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,832   copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,835   copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,838   copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,841   copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,844   copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,847   copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,851   copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,852   copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,855   copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,858   copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,860   copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,862   copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,865   copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols
2025-11-18T10:38:42,868   creating build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,869   copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,872   copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,874   copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,877   copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,879   copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,882   copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,884   copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,886   copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,888   copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,890   copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,893   copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests
2025-11-18T10:38:42,897   creating build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,899   copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,902   copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,904   copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,907   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,910   copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,913   copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,916   copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,919   copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,922   copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,924   copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,927   copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,929   copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:42,932   creating build/lib/xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:42,933   copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:42,937   copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:42,940   copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:42,943   copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:42,945   copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:42,947   running egg_info
2025-11-18T10:38:42,958   writing scipion_em_xmipp.egg-info/PKG-INFO
2025-11-18T10:38:42,961   writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt
2025-11-18T10:38:42,963   writing entry points to scipion_em_xmipp.egg-info/entry_points.txt
2025-11-18T10:38:42,964   writing requirements to scipion_em_xmipp.egg-info/requires.txt
2025-11-18T10:38:42,965   writing top-level names to scipion_em_xmipp.egg-info/top_level.txt
2025-11-18T10:38:42,993   reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-18T10:38:43,008   reading manifest template 'MANIFEST.in'
2025-11-18T10:38:43,010   adding license file 'LICENSE'
2025-11-18T10:38:43,023   writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt'
2025-11-18T10:38:43,034   copying xmipp3/protocols.conf -> build/lib/xmipp3
2025-11-18T10:38:43,037   copying xmipp3/xmipp_logo.png -> build/lib/xmipp3
2025-11-18T10:38:43,042   copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3
2025-11-18T10:38:43,094   installing to build/bdist.linux-armv7l/wheel
2025-11-18T10:38:43,094   running install
2025-11-18T10:38:43,129   running install_lib
2025-11-18T10:38:43,137   creating build/bdist.linux-armv7l/wheel
2025-11-18T10:38:43,140   creating build/bdist.linux-armv7l/wheel/xmipp3
2025-11-18T10:38:43,142   copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,148   copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,151   copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,154   copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,157   copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,162   creating build/bdist.linux-armv7l/wheel/xmipp3/convert
2025-11-18T10:38:43,164   copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-18T10:38:43,167   copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-18T10:38:43,174   copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-18T10:38:43,176   copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert
2025-11-18T10:38:43,178   copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,181   copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,184   copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,186   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy
2025-11-18T10:38:43,187   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers
2025-11-18T10:38:43,188   copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-18T10:38:43,190   copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-18T10:38:43,193   copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-18T10:38:43,195   copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-18T10:38:43,197   copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-18T10:38:43,199   copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers
2025-11-18T10:38:43,202   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols
2025-11-18T10:38:43,203   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,205   copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,208   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,212   copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,214   copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,217   copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,219   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,222   copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,225   copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,227   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,232   copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,238   copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,244   copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,250   copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,258   copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,263   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,266   copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,268   copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,271   copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,273   copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,276   copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,278   copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,280   copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,283   copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,285   copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,287   copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,290   copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols
2025-11-18T10:38:43,292   copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy
2025-11-18T10:38:43,294   creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests
2025-11-18T10:38:43,295   copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,298   copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,300   copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,302   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,304   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,306   copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,308   copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,310   copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,312   copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,315   copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,317   copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests
2025-11-18T10:38:43,321   creating build/bdist.linux-armv7l/wheel/xmipp3/viewers
2025-11-18T10:38:43,322   copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,324   copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,327   copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,329   copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,331   copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,333   copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,335   copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,337   copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,339   copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,342   copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,344   copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,346   copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,348   copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,350   copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,352   copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,355   copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,357   copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,360   copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,363   copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,367   copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,370   copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,375   copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,377   copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,380   copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,382   copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,384   copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,387   copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,392   copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,394   copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,397   copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,399   copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,402   copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,403   copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,406   copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,408   copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,410   copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,412   copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,414   copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,416   copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,419   copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers
2025-11-18T10:38:43,422   copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,426   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols
2025-11-18T10:38:43,428   copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,430   copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,433   copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,435   copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,437   copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,439   copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,442   copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,444   copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,446   copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,449   copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,451   copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,453   copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,456   copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,458   copying build/lib/xmipp3/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,461   copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,463   copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,466   copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,469   copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,471   copying build/lib/xmipp3/protocols/protocol_classify_pca_streaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,474   copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,476   copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,479   copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,483   copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,486   copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,489   copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,493   copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,498   copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,501   copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,505   copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,508   copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,511   copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,513   copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,516   copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,518   copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,521   copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,523   copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,526   copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,528   copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,530   copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,532   copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,534   copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,536   copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,539   copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,541   copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,544   copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,546   copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,549   copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,551   copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,553   copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,556   copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,559   copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,561   copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,563   copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,566   copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,569   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,570   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,573   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,576   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,578   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,581   copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,583   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,587   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,589   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,591   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,594   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,596   copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,598   copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess
2025-11-18T10:38:43,601   copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,603   copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,605   copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,608   copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,611   copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,613   copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,616   copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,623   copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,629   copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,634   copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,641   copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,647   copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,650   copying build/lib/xmipp3/protocols/protocol_classify_pca.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,654   copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,659   copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,664   copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,669   copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,674   copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,679   copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,682   copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,687   copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,690   copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,693   copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,695   copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,698   copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,700   copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,702   copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,705   copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,707   copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,709   copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,713   creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:43,714   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:43,717   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:43,720   copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:43,722   copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:43,724   copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch
2025-11-18T10:38:43,726   copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,728   copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,731   copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,734   copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,738   copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,743   copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,748   copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,753   copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,757   copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,760   copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,764   copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,768   copying build/lib/xmipp3/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,772   copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,777   copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,783   copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols
2025-11-18T10:38:43,789   copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,799   creating build/bdist.linux-armv7l/wheel/xmipp3/tests
2025-11-18T10:38:43,802   copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,807   copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,809   copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,811   copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,813   copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,816   copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,818   copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,821   copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,823   copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,825   copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,827   copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,830   copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,833   copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,835   copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,837   copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,838   copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,840   copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,843   copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,845   copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,847   copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,849   copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,851   copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,853   copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,856   copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,860   copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,868   copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,875   copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,878   copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,881   copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,883   copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,886   copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,889   copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,896   copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,900   copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,903   copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests
2025-11-18T10:38:43,905   copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,908   copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,911   copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,932   copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3
2025-11-18T10:38:43,937   running install_egg_info
2025-11-18T10:38:43,945   Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-26.0.2-py3.11.egg-info
2025-11-18T10:38:43,965   running install_scripts
2025-11-18T10:38:44,005   creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-26.0.2.dist-info/WHEEL
2025-11-18T10:38:44,013   creating '/tmp/pip-wheel-rmqa4yth/.tmp-ivjsoads/scipion_em_xmipp-26.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-11-18T10:38:44,030   adding 'scipion_em_xmipp-26.0.2.dist-info/licenses/LICENSE'
2025-11-18T10:38:44,035   adding 'xmipp3/__init__.py'
2025-11-18T10:38:44,040   adding 'xmipp3/base.py'
2025-11-18T10:38:44,046   adding 'xmipp3/bibtex.py'
2025-11-18T10:38:44,049   adding 'xmipp3/checkProtocolsConf.py'
2025-11-18T10:38:44,051   adding 'xmipp3/constants.py'
2025-11-18T10:38:44,054   adding 'xmipp3/logParser.py'
2025-11-18T10:38:44,057   adding 'xmipp3/programs.py'
2025-11-18T10:38:44,060   adding 'xmipp3/protocols.conf'
2025-11-18T10:38:44,063   adding 'xmipp3/protocolsCollectInfo.py'
2025-11-18T10:38:44,066   adding 'xmipp3/utils.py'
2025-11-18T10:38:44,068   adding 'xmipp3/version.py'
2025-11-18T10:38:44,071   adding 'xmipp3/wizards.py'
2025-11-18T10:38:44,083   adding 'xmipp3/xmipp_logo.png'
2025-11-18T10:38:44,173   adding 'xmipp3/xmipp_logo_devel.png'
2025-11-18T10:38:44,179   adding 'xmipp3/convert/__init__.py'
2025-11-18T10:38:44,187   adding 'xmipp3/convert/convert.py'
2025-11-18T10:38:44,189   adding 'xmipp3/convert/dataimport.py'
2025-11-18T10:38:44,191   adding 'xmipp3/convert/io_coordinates.py'
2025-11-18T10:38:44,192   adding 'xmipp3/legacy/__init__.py'
2025-11-18T10:38:44,194   adding 'xmipp3/legacy/protocols/__init__.py'
2025-11-18T10:38:44,196   adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py'
2025-11-18T10:38:44,198   adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py'
2025-11-18T10:38:44,201   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py'
2025-11-18T10:38:44,206   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py'
2025-11-18T10:38:44,209   adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py'
2025-11-18T10:38:44,211   adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py'
2025-11-18T10:38:44,216   adding 'xmipp3/legacy/protocols/protocol_deep_align.py'
2025-11-18T10:38:44,218   adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py'
2025-11-18T10:38:44,221   adding 'xmipp3/legacy/protocols/protocol_enrich.py'
2025-11-18T10:38:44,225   adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py'
2025-11-18T10:38:44,226   adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py'
2025-11-18T10:38:44,228   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py'
2025-11-18T10:38:44,229   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py'
2025-11-18T10:38:44,232   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py'
2025-11-18T10:38:44,236   adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py'
2025-11-18T10:38:44,239   adding 'xmipp3/legacy/protocols/protocol_mltomo.py'
2025-11-18T10:38:44,242   adding 'xmipp3/legacy/protocols/protocol_movie_average.py'
2025-11-18T10:38:44,245   adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py'
2025-11-18T10:38:44,248   adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py'
2025-11-18T10:38:44,254   adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py'
2025-11-18T10:38:44,257   adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py'
2025-11-18T10:38:44,261   adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py'
2025-11-18T10:38:44,266   adding 'xmipp3/legacy/protocols/protocol_solid_angles.py'
2025-11-18T10:38:44,267   adding 'xmipp3/legacy/protocols/protocol_split_volume.py'
2025-11-18T10:38:44,272   adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py'
2025-11-18T10:38:44,274   adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py'
2025-11-18T10:38:44,276   adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py'
2025-11-18T10:38:44,277   adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py'
2025-11-18T10:38:44,279   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py'
2025-11-18T10:38:44,280   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py'
2025-11-18T10:38:44,281   adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py'
2025-11-18T10:38:44,283   adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py'
2025-11-18T10:38:44,284   adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py'
2025-11-18T10:38:44,286   adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py'
2025-11-18T10:38:44,287   adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py'
2025-11-18T10:38:44,293   adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py'
2025-11-18T10:38:44,295   adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py'
2025-11-18T10:38:44,297   adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py'
2025-11-18T10:38:44,299   adding 'xmipp3/legacy/viewers/viewer_deep_align.py'
2025-11-18T10:38:44,300   adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py'
2025-11-18T10:38:44,302   adding 'xmipp3/legacy/viewers/viewer_mltomo.py'
2025-11-18T10:38:44,304   adding 'xmipp3/legacy/viewers/viewer_solid_angles.py'
2025-11-18T10:38:44,305   adding 'xmipp3/legacy/viewers/viewer_split_volume.py'
2025-11-18T10:38:44,309   adding 'xmipp3/protocols/__init__.py'
2025-11-18T10:38:44,311   adding 'xmipp3/protocols/protocol_align_volume.py'
2025-11-18T10:38:44,313   adding 'xmipp3/protocols/protocol_align_volume_and_particles.py'
2025-11-18T10:38:44,315   adding 'xmipp3/protocols/protocol_analyze_local_ctf.py'
2025-11-18T10:38:44,318   adding 'xmipp3/protocols/protocol_angular_graph_consistency.py'
2025-11-18T10:38:44,320   adding 'xmipp3/protocols/protocol_apply_alignment.py'
2025-11-18T10:38:44,321   adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py'
2025-11-18T10:38:44,323   adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py'
2025-11-18T10:38:44,325   adding 'xmipp3/protocols/protocol_apply_zernike3d.py'
2025-11-18T10:38:44,327   adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py'
2025-11-18T10:38:44,328   adding 'xmipp3/protocols/protocol_break_symmetry.py'
2025-11-18T10:38:44,330   adding 'xmipp3/protocols/protocol_center_particles.py'
2025-11-18T10:38:44,333   adding 'xmipp3/protocols/protocol_cl2d.py'
2025-11-18T10:38:44,335   adding 'xmipp3/protocols/protocol_cl2d_align.py'
2025-11-18T10:38:44,337   adding 'xmipp3/protocols/protocol_cl2d_clustering.py'
2025-11-18T10:38:44,340   adding 'xmipp3/protocols/protocol_classes_2d_mapping.py'
2025-11-18T10:38:44,342   adding 'xmipp3/protocols/protocol_classify_pca.py'
2025-11-18T10:38:44,346   adding 'xmipp3/protocols/protocol_classify_pca_streaming.py'
2025-11-18T10:38:44,347   adding 'xmipp3/protocols/protocol_compare_angles.py'
2025-11-18T10:38:44,351   adding 'xmipp3/protocols/protocol_compare_reprojections.py'
2025-11-18T10:38:44,353   adding 'xmipp3/protocols/protocol_compute_likelihood.py'
2025-11-18T10:38:44,357   adding 'xmipp3/protocols/protocol_consensus_classes.py'
2025-11-18T10:38:44,359   adding 'xmipp3/protocols/protocol_consensus_local_ctf.py'
2025-11-18T10:38:44,361   adding 'xmipp3/protocols/protocol_convert_pdb.py'
2025-11-18T10:38:44,363   adding 'xmipp3/protocols/protocol_core_analysis.py'
2025-11-18T10:38:44,365   adding 'xmipp3/protocols/protocol_create_gallery.py'
2025-11-18T10:38:44,369   adding 'xmipp3/protocols/protocol_ctf_consensus.py'
2025-11-18T10:38:44,370   adding 'xmipp3/protocols/protocol_ctf_correct_phase.py'
2025-11-18T10:38:44,372   adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py'
2025-11-18T10:38:44,374   adding 'xmipp3/protocols/protocol_ctf_defocus_group.py'
2025-11-18T10:38:44,377   adding 'xmipp3/protocols/protocol_ctf_micrographs.py'
2025-11-18T10:38:44,379   adding 'xmipp3/protocols/protocol_deep_center.py'
2025-11-18T10:38:44,380   adding 'xmipp3/protocols/protocol_deep_center_predict.py'
2025-11-18T10:38:44,382   adding 'xmipp3/protocols/protocol_deep_hand.py'
2025-11-18T10:38:44,385   adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py'
2025-11-18T10:38:44,387   adding 'xmipp3/protocols/protocol_denoise_particles.py'
2025-11-18T10:38:44,389   adding 'xmipp3/protocols/protocol_eliminate_empty_images.py'
2025-11-18T10:38:44,391   adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py'
2025-11-18T10:38:44,394   adding 'xmipp3/protocols/protocol_extract_particles.py'
2025-11-18T10:38:44,397   adding 'xmipp3/protocols/protocol_extract_particles_pairs.py'
2025-11-18T10:38:44,400   adding 'xmipp3/protocols/protocol_flexalign.py'
2025-11-18T10:38:44,402   adding 'xmipp3/protocols/protocol_generate_reprojections.py'
2025-11-18T10:38:44,403   adding 'xmipp3/protocols/protocol_helical_parameters.py'
2025-11-18T10:38:44,405   adding 'xmipp3/protocols/protocol_kerdensom.py'
2025-11-18T10:38:44,407   adding 'xmipp3/protocols/protocol_local_ctf.py'
2025-11-18T10:38:44,409   adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py'
2025-11-18T10:38:44,411   adding 'xmipp3/protocols/protocol_ml2d.py'
2025-11-18T10:38:44,415   adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py'
2025-11-18T10:38:44,418   adding 'xmipp3/protocols/protocol_movie_dose_analysis.py'
2025-11-18T10:38:44,421   adding 'xmipp3/protocols/protocol_movie_gain.py'
2025-11-18T10:38:44,423   adding 'xmipp3/protocols/protocol_movie_max_shift.py'
2025-11-18T10:38:44,425   adding 'xmipp3/protocols/protocol_movie_split_frames.py'
2025-11-18T10:38:44,427   adding 'xmipp3/protocols/protocol_multiple_fscs.py'
2025-11-18T10:38:44,430   adding 'xmipp3/protocols/protocol_multireference_alignability.py'
2025-11-18T10:38:44,431   adding 'xmipp3/protocols/protocol_normalize_strain.py'
2025-11-18T10:38:44,433   adding 'xmipp3/protocols/protocol_particle_pick.py'
2025-11-18T10:38:44,435   adding 'xmipp3/protocols/protocol_particle_pick_automatic.py'
2025-11-18T10:38:44,437   adding 'xmipp3/protocols/protocol_particle_pick_consensus.py'
2025-11-18T10:38:44,439   adding 'xmipp3/protocols/protocol_particle_pick_pairs.py'
2025-11-18T10:38:44,440   adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py'
2025-11-18T10:38:44,442   adding 'xmipp3/protocols/protocol_phantom_create.py'
2025-11-18T10:38:44,444   adding 'xmipp3/protocols/protocol_pick_noise.py'
2025-11-18T10:38:44,446   adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py'
2025-11-18T10:38:44,449   adding 'xmipp3/protocols/protocol_preprocess_micrographs.py'
2025-11-18T10:38:44,451   adding 'xmipp3/protocols/protocol_random_conical_tilt.py'
2025-11-18T10:38:44,454   adding 'xmipp3/protocols/protocol_ransac.py'
2025-11-18T10:38:44,456   adding 'xmipp3/protocols/protocol_reconstruct_fourier.py'
2025-11-18T10:38:44,466   adding 'xmipp3/protocols/protocol_reconstruct_highres.py'
2025-11-18T10:38:44,470   adding 'xmipp3/protocols/protocol_reconstruct_significant.py'
2025-11-18T10:38:44,473   adding 'xmipp3/protocols/protocol_reconstruct_swarm.py'
2025-11-18T10:38:44,475   adding 'xmipp3/protocols/protocol_resolution3d.py'
2025-11-18T10:38:44,477   adding 'xmipp3/protocols/protocol_resolution_bfactor.py'
2025-11-18T10:38:44,479   adding 'xmipp3/protocols/protocol_resolution_deepres.py'
2025-11-18T10:38:44,481   adding 'xmipp3/protocols/protocol_resolution_directional.py'
2025-11-18T10:38:44,483   adding 'xmipp3/protocols/protocol_resolution_fso.py'
2025-11-18T10:38:44,485   adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py'
2025-11-18T10:38:44,487   adding 'xmipp3/protocols/protocol_rotate_volume.py'
2025-11-18T10:38:44,488   adding 'xmipp3/protocols/protocol_rotational_symmetry.py'
2025-11-18T10:38:44,498   adding 'xmipp3/protocols/protocol_screen_deepConsensus.py'
2025-11-18T10:38:44,501   adding 'xmipp3/protocols/protocol_screen_particles.py'
2025-11-18T10:38:44,503   adding 'xmipp3/protocols/protocol_shift_particles.py'
2025-11-18T10:38:44,505   adding 'xmipp3/protocols/protocol_shift_volume.py'
2025-11-18T10:38:44,506   adding 'xmipp3/protocols/protocol_simulate_ctf.py'
2025-11-18T10:38:44,508   adding 'xmipp3/protocols/protocol_structure_map.py'
2025-11-18T10:38:44,511   adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py'
2025-11-18T10:38:44,513   adding 'xmipp3/protocols/protocol_subtract_projection.py'
2025-11-18T10:38:44,516   adding 'xmipp3/protocols/protocol_tilt_analysis.py'
2025-11-18T10:38:44,518   adding 'xmipp3/protocols/protocol_trigger_data.py'
2025-11-18T10:38:44,521   adding 'xmipp3/protocols/protocol_validate_fscq.py'
2025-11-18T10:38:44,524   adding 'xmipp3/protocols/protocol_validate_nontilt.py'
2025-11-18T10:38:44,526   adding 'xmipp3/protocols/protocol_validate_overfitting.py'
2025-11-18T10:38:44,529   adding 'xmipp3/protocols/protocol_volume_adjust_sub.py'
2025-11-18T10:38:44,530   adding 'xmipp3/protocols/protocol_volume_consensus.py'
2025-11-18T10:38:44,532   adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py'
2025-11-18T10:38:44,534   adding 'xmipp3/protocols/protocol_volume_local_adjust.py'
2025-11-18T10:38:44,536   adding 'xmipp3/protocols/protocol_volume_local_sharpening.py'
2025-11-18T10:38:44,537   adding 'xmipp3/protocols/protocol_volume_strain.py'
2025-11-18T10:38:44,539   adding 'xmipp3/protocols/protocol_write_testC.py'
2025-11-18T10:38:44,540   adding 'xmipp3/protocols/protocol_write_testP.py'
2025-11-18T10:38:44,542   adding 'xmipp3/protocols/protocol_preprocess/__init__.py'
2025-11-18T10:38:44,544   adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py'
2025-11-18T10:38:44,546   adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py'
2025-11-18T10:38:44,547   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py'
2025-11-18T10:38:44,550   adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py'
2025-11-18T10:38:44,552   adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py'
2025-11-18T10:38:44,555   adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py'
2025-11-18T10:38:44,558   adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py'
2025-11-18T10:38:44,559   adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py'
2025-11-18T10:38:44,561   adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py'
2025-11-18T10:38:44,565   adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py'
2025-11-18T10:38:44,567   adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py'
2025-11-18T10:38:44,569   adding 'xmipp3/protocols/protocol_projmatch/__init__.py'
2025-11-18T10:38:44,573   adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py'
2025-11-18T10:38:44,575   adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py'
2025-11-18T10:38:44,579   adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py'
2025-11-18T10:38:44,581   adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py'
2025-11-18T10:38:44,584   adding 'xmipp3/tests/__init__.py'
2025-11-18T10:38:44,588   adding 'xmipp3/tests/test_convert_xmipp.py'
2025-11-18T10:38:44,589   adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py'
2025-11-18T10:38:44,591   adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py'
2025-11-18T10:38:44,592   adding 'xmipp3/tests/test_protocol_compare_angles.py'
2025-11-18T10:38:44,594   adding 'xmipp3/tests/test_protocol_consensus_classes3D.py'
2025-11-18T10:38:44,596   adding 'xmipp3/tests/test_protocol_ctf_consensus.py'
2025-11-18T10:38:44,598   adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py'
2025-11-18T10:38:44,600   adding 'xmipp3/tests/test_protocol_likelihood.py'
2025-11-18T10:38:44,601   adding 'xmipp3/tests/test_protocol_monodir.py'
2025-11-18T10:38:44,603   adding 'xmipp3/tests/test_protocol_multiple_fsc.py'
2025-11-18T10:38:44,604   adding 'xmipp3/tests/test_protocol_multireference_alignability.py'
2025-11-18T10:38:44,606   adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py'
2025-11-18T10:38:44,607   adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py'
2025-11-18T10:38:44,609   adding 'xmipp3/tests/test_protocol_simulate_ctf.py'
2025-11-18T10:38:44,610   adding 'xmipp3/tests/test_protocol_split_frames.py'
2025-11-18T10:38:44,612   adding 'xmipp3/tests/test_protocol_validate_fscq.py'
2025-11-18T10:38:44,613   adding 'xmipp3/tests/test_protocol_validate_overfitting.py'
2025-11-18T10:38:44,614   adding 'xmipp3/tests/test_protocols_add_noise.py'
2025-11-18T10:38:44,616   adding 'xmipp3/tests/test_protocols_continuousflex.py'
2025-11-18T10:38:44,617   adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py'
2025-11-18T10:38:44,618   adding 'xmipp3/tests/test_protocols_deepcenter_predict.py'
2025-11-18T10:38:44,619   adding 'xmipp3/tests/test_protocols_deepres.py'
2025-11-18T10:38:44,621   adding 'xmipp3/tests/test_protocols_fso.py'
2025-11-18T10:38:44,622   adding 'xmipp3/tests/test_protocols_highres.py'
2025-11-18T10:38:44,624   adding 'xmipp3/tests/test_protocols_local_defocus.py'
2025-11-18T10:38:44,625   adding 'xmipp3/tests/test_protocols_localdeblur.py'
2025-11-18T10:38:44,626   adding 'xmipp3/tests/test_protocols_monores.py'
2025-11-18T10:38:44,628   adding 'xmipp3/tests/test_protocols_realignment_classes.py'
2025-11-18T10:38:44,635   adding 'xmipp3/tests/test_protocols_xmipp_2d.py'
2025-11-18T10:38:44,643   adding 'xmipp3/tests/test_protocols_xmipp_3d.py'
2025-11-18T10:38:44,649   adding 'xmipp3/tests/test_protocols_xmipp_mics.py'
2025-11-18T10:38:44,650   adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py'
2025-11-18T10:38:44,653   adding 'xmipp3/tests/test_protocols_xmipp_movies.py'
2025-11-18T10:38:44,655   adding 'xmipp3/tests/test_protocols_zernike3d.py'
2025-11-18T10:38:44,657   adding 'xmipp3/viewers/__init__.py'
2025-11-18T10:38:44,659   adding 'xmipp3/viewers/plotter.py'
2025-11-18T10:38:44,661   adding 'xmipp3/viewers/viewer.py'
2025-11-18T10:38:44,663   adding 'xmipp3/viewers/viewer_LL_matrix.py'
2025-11-18T10:38:44,664   adding 'xmipp3/viewers/viewer_analyze_local_ctf.py'
2025-11-18T10:38:44,666   adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py'
2025-11-18T10:38:44,667   adding 'xmipp3/viewers/viewer_cl2d.py'
2025-11-18T10:38:44,669   adding 'xmipp3/viewers/viewer_cl2d_clustering.py'
2025-11-18T10:38:44,670   adding 'xmipp3/viewers/viewer_consensus_classes.py'
2025-11-18T10:38:44,672   adding 'xmipp3/viewers/viewer_ctf_consensus.py'
2025-11-18T10:38:44,673   adding 'xmipp3/viewers/viewer_deepEMHancer.py'
2025-11-18T10:38:44,675   adding 'xmipp3/viewers/viewer_deep_consensus.py'
2025-11-18T10:38:44,676   adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py'
2025-11-18T10:38:44,678   adding 'xmipp3/viewers/viewer_dose_analysis.py'
2025-11-18T10:38:44,679   adding 'xmipp3/viewers/viewer_eliminate_empty_images.py'
2025-11-18T10:38:44,681   adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py'
2025-11-18T10:38:44,682   adding 'xmipp3/viewers/viewer_local_sharpening.py'
2025-11-18T10:38:44,684   adding 'xmipp3/viewers/viewer_ml2d.py'
2025-11-18T10:38:44,686   adding 'xmipp3/viewers/viewer_movie_alignment.py'
2025-11-18T10:38:44,687   adding 'xmipp3/viewers/viewer_normalize_strain.py'
2025-11-18T10:38:44,689   adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py'
2025-11-18T10:38:44,692   adding 'xmipp3/viewers/viewer_projmatch.py'
2025-11-18T10:38:44,694   adding 'xmipp3/viewers/viewer_ransac.py'
2025-11-18T10:38:44,696   adding 'xmipp3/viewers/viewer_reconstruct_highres.py'
2025-11-18T10:38:44,698   adding 'xmipp3/viewers/viewer_resolution3d.py'
2025-11-18T10:38:44,700   adding 'xmipp3/viewers/viewer_resolution_bfactor.py'
2025-11-18T10:38:44,701   adding 'xmipp3/viewers/viewer_resolution_deepres.py'
2025-11-18T10:38:44,704   adding 'xmipp3/viewers/viewer_resolution_directional.py'
2025-11-18T10:38:44,706   adding 'xmipp3/viewers/viewer_resolution_fso.py'
2025-11-18T10:38:44,708   adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py'
2025-11-18T10:38:44,711   adding 'xmipp3/viewers/viewer_structure_map.py'
2025-11-18T10:38:44,713   adding 'xmipp3/viewers/viewer_subtract_projection.py'
2025-11-18T10:38:44,714   adding 'xmipp3/viewers/viewer_swarm.py'
2025-11-18T10:38:44,717   adding 'xmipp3/viewers/viewer_validate_fscq.py'
2025-11-18T10:38:44,718   adding 'xmipp3/viewers/viewer_validate_nontilt.py'
2025-11-18T10:38:44,720   adding 'xmipp3/viewers/viewer_validate_overfitting.py'
2025-11-18T10:38:44,721   adding 'xmipp3/viewers/viewer_volume_consensus.py'
2025-11-18T10:38:44,722   adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py'
2025-11-18T10:38:44,723   adding 'xmipp3/viewers/viewer_volume_strain.py'
2025-11-18T10:38:44,725   adding 'xmipp3/viewers/viewer_volume_subtraction.py'
2025-11-18T10:38:44,726   adding 'scipion_em_xmipp-26.0.2.dist-info/METADATA'
2025-11-18T10:38:44,727   adding 'scipion_em_xmipp-26.0.2.dist-info/WHEEL'
2025-11-18T10:38:44,728   adding 'scipion_em_xmipp-26.0.2.dist-info/entry_points.txt'
2025-11-18T10:38:44,729   adding 'scipion_em_xmipp-26.0.2.dist-info/top_level.txt'
2025-11-18T10:38:44,733   adding 'scipion_em_xmipp-26.0.2.dist-info/RECORD'
2025-11-18T10:38:44,755   removing build/bdist.linux-armv7l/wheel
2025-11-18T10:38:44,926   Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done'
2025-11-18T10:38:44,984   Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-26.0.2-py3-none-any.whl size=1806324 sha256=0ffb844afc573b3b653c8735d1c40f1755e5fc9e4398d67b8f3eaf7dc8f8fe6e
2025-11-18T10:38:44,985   Stored in directory: /tmp/pip-ephem-wheel-cache-kwway3nw/wheels/df/61/ad/04927155be2f7e9ec88416694ae6cab8cd5a344038c186efe5
2025-11-18T10:38:45,013 Successfully built scipion-em-xmipp
2025-11-18T10:38:45,089 Removed build tracker: '/tmp/pip-build-tracker-61gw3dwt'