2025-11-18T19:25:10,251 Created temporary directory: /tmp/pip-ephem-wheel-cache-td7gmrde 2025-11-18T19:25:10,252 Created temporary directory: /tmp/pip-build-tracker-f86etfgm 2025-11-18T19:25:10,253 Initialized build tracking at /tmp/pip-build-tracker-f86etfgm 2025-11-18T19:25:10,253 Created build tracker: /tmp/pip-build-tracker-f86etfgm 2025-11-18T19:25:10,254 Entered build tracker: /tmp/pip-build-tracker-f86etfgm 2025-11-18T19:25:10,254 Created temporary directory: /tmp/pip-wheel-dxgd4gkj 2025-11-18T19:25:10,258 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev3-py2.py3-none-any.whl#sha256=c11cefb2c969b6e74729ae125693e5bf5401218df9615d22a68b3a5d8ce68122 (from https://www.piwheels.org/simple/galaxy-tool-util/) 2025-11-18T19:25:10,817 Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev2-py2.py3-none-any.whl#sha256=62e79b75dc27fa398c1e33a336b253d18de3fc94880fe567b3ee01fd081c6d5c (from https://www.piwheels.org/simple/galaxy-tool-util/) 2025-11-18T19:25:10,818 Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/) 2025-11-18T19:25:10,818 Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/) 2025-11-18T19:25:10,819 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/ 2025-11-18T19:25:10,820 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/ 2025-11-18T19:25:10,845 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates 2025-11-18T19:25:10,863 Collecting galaxy-tool-util==25.0.4 2025-11-18T19:25:10,866 Created temporary directory: /tmp/pip-unpack-u8t76_a2 2025-11-18T19:25:11,004 Downloading galaxy_tool_util-25.0.4.tar.gz (468 kB) 2025-11-18T19:25:11,498 Added galaxy-tool-util==25.0.4 from https://files.pythonhosted.org/packages/9e/37/d492f9b7d924867342cfd93d7b863e42278980287543c4c8a42cd63a4c69/galaxy_tool_util-25.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-f86etfgm' 2025-11-18T19:25:11,501 Created temporary directory: /tmp/pip-build-env-60gcffha 2025-11-18T19:25:11,505 Installing build dependencies: started 2025-11-18T19:25:11,506 Running command pip subprocess to install build dependencies 2025-11-18T19:25:12,663 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-18T19:25:13,252 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-18T19:25:13,274 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-18T19:25:14,995 Collecting setuptools 2025-11-18T19:25:15,139 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-18T19:25:18,064 Installing collected packages: setuptools 2025-11-18T19:25:21,602 Successfully installed setuptools-80.9.0 2025-11-18T19:25:21,868 Installing build dependencies: finished with status 'done' 2025-11-18T19:25:21,874 Getting requirements to build wheel: started 2025-11-18T19:25:21,876 Running command Getting requirements to build wheel 2025-11-18T19:25:22,452 /tmp/pip-build-env-60gcffha/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-18T19:25:22,452 !! 2025-11-18T19:25:22,454 ******************************************************************************** 2025-11-18T19:25:22,454 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-18T19:25:22,455 License :: OSI Approved :: Academic Free License (AFL) 2025-11-18T19:25:22,456 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-18T19:25:22,457 ******************************************************************************** 2025-11-18T19:25:22,458 !! 2025-11-18T19:25:22,458 self._finalize_license_expression() 2025-11-18T19:25:22,516 running egg_info 2025-11-18T19:25:22,523 writing galaxy_tool_util.egg-info/PKG-INFO 2025-11-18T19:25:22,531 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2025-11-18T19:25:22,533 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2025-11-18T19:25:22,536 writing requirements to galaxy_tool_util.egg-info/requires.txt 2025-11-18T19:25:22,538 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2025-11-18T19:25:22,593 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2025-11-18T19:25:22,605 reading manifest template 'MANIFEST.in' 2025-11-18T19:25:22,611 adding license file 'LICENSE' 2025-11-18T19:25:22,620 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2025-11-18T19:25:22,709 Getting requirements to build wheel: finished with status 'done' 2025-11-18T19:25:22,713 Created temporary directory: /tmp/pip-modern-metadata-saq4s78n 2025-11-18T19:25:22,715 Preparing metadata (pyproject.toml): started 2025-11-18T19:25:22,716 Running command Preparing metadata (pyproject.toml) 2025-11-18T19:25:23,262 /tmp/pip-build-env-60gcffha/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-18T19:25:23,262 !! 2025-11-18T19:25:23,264 ******************************************************************************** 2025-11-18T19:25:23,265 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-18T19:25:23,266 License :: OSI Approved :: Academic Free License (AFL) 2025-11-18T19:25:23,267 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-18T19:25:23,268 ******************************************************************************** 2025-11-18T19:25:23,269 !! 2025-11-18T19:25:23,270 self._finalize_license_expression() 2025-11-18T19:25:23,287 running dist_info 2025-11-18T19:25:23,299 creating /tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info 2025-11-18T19:25:23,300 writing /tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/PKG-INFO 2025-11-18T19:25:23,308 writing dependency_links to /tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/dependency_links.txt 2025-11-18T19:25:23,310 writing entry points to /tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/entry_points.txt 2025-11-18T19:25:23,314 writing requirements to /tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/requires.txt 2025-11-18T19:25:23,314 writing top-level names to /tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/top_level.txt 2025-11-18T19:25:23,316 writing manifest file '/tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/SOURCES.txt' 2025-11-18T19:25:23,364 reading manifest file '/tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/SOURCES.txt' 2025-11-18T19:25:23,367 reading manifest template 'MANIFEST.in' 2025-11-18T19:25:23,372 adding license file 'LICENSE' 2025-11-18T19:25:23,379 writing manifest file '/tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util.egg-info/SOURCES.txt' 2025-11-18T19:25:23,381 creating '/tmp/pip-modern-metadata-saq4s78n/galaxy_tool_util-25.0.4.dist-info' 2025-11-18T19:25:23,516 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-18T19:25:23,523 Source in /tmp/pip-wheel-dxgd4gkj/galaxy-tool-util_1ea78c033e8d4f19866ba7dfc3be8e07 has version 25.0.4, which satisfies requirement galaxy-tool-util==25.0.4 from https://files.pythonhosted.org/packages/9e/37/d492f9b7d924867342cfd93d7b863e42278980287543c4c8a42cd63a4c69/galaxy_tool_util-25.0.4.tar.gz 2025-11-18T19:25:23,524 Removed galaxy-tool-util==25.0.4 from https://files.pythonhosted.org/packages/9e/37/d492f9b7d924867342cfd93d7b863e42278980287543c4c8a42cd63a4c69/galaxy_tool_util-25.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-f86etfgm' 2025-11-18T19:25:23,533 Created temporary directory: /tmp/pip-unpack-8bfn97iz 2025-11-18T19:25:23,534 Building wheels for collected packages: galaxy-tool-util 2025-11-18T19:25:23,538 Created temporary directory: /tmp/pip-wheel-5py5h_8v 2025-11-18T19:25:23,539 Destination directory: /tmp/pip-wheel-5py5h_8v 2025-11-18T19:25:23,541 Building wheel for galaxy-tool-util (pyproject.toml): started 2025-11-18T19:25:23,542 Running command Building wheel for galaxy-tool-util (pyproject.toml) 2025-11-18T19:25:24,070 /tmp/pip-build-env-60gcffha/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-18T19:25:24,070 !! 2025-11-18T19:25:24,071 ******************************************************************************** 2025-11-18T19:25:24,071 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-18T19:25:24,073 License :: OSI Approved :: Academic Free License (AFL) 2025-11-18T19:25:24,074 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-18T19:25:24,074 ******************************************************************************** 2025-11-18T19:25:24,075 !! 2025-11-18T19:25:24,076 self._finalize_license_expression() 2025-11-18T19:25:24,099 running bdist_wheel 2025-11-18T19:25:24,128 running build 2025-11-18T19:25:24,129 running build_py 2025-11-18T19:25:24,138 creating build/lib/galaxy 2025-11-18T19:25:24,141 copying galaxy/__init__.py -> build/lib/galaxy 2025-11-18T19:25:24,143 creating build/lib/galaxy/tool_util 2025-11-18T19:25:24,144 copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,147 copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,149 copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,150 copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,153 copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,155 copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,157 copying galaxy/tool_util/validate_test_format.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,159 copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,161 copying galaxy/tool_util/version.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,163 copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,165 copying galaxy/tool_util/model_factory.py -> build/lib/galaxy/tool_util 2025-11-18T19:25:24,167 creating build/lib/galaxy/tool_util/upgrade 2025-11-18T19:25:24,168 copying galaxy/tool_util/upgrade/script.py -> build/lib/galaxy/tool_util/upgrade 2025-11-18T19:25:24,170 copying galaxy/tool_util/upgrade/__init__.py -> build/lib/galaxy/tool_util/upgrade 2025-11-18T19:25:24,172 creating build/lib/galaxy/tool_util/locations 2025-11-18T19:25:24,173 copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations 2025-11-18T19:25:24,175 copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations 2025-11-18T19:25:24,177 copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations 2025-11-18T19:25:24,179 copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations 2025-11-18T19:25:24,181 creating build/lib/galaxy/tool_util/client 2025-11-18T19:25:24,182 copying galaxy/tool_util/client/landing.py -> build/lib/galaxy/tool_util/client 2025-11-18T19:25:24,184 copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client 2025-11-18T19:25:24,185 copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client 2025-11-18T19:25:24,188 creating build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,190 copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,192 copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,195 copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,198 copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,200 copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,202 copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,204 copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,206 copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,208 copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,211 copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,214 copying galaxy/tool_util/parser/parameter_validators.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,216 copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser 2025-11-18T19:25:24,219 creating build/lib/galaxy/tool_util/data 2025-11-18T19:25:24,220 copying galaxy/tool_util/data/__init__.py -> build/lib/galaxy/tool_util/data 2025-11-18T19:25:24,224 copying galaxy/tool_util/data/_schema.py -> build/lib/galaxy/tool_util/data 2025-11-18T19:25:24,226 creating build/lib/galaxy/tool_util/biotools 2025-11-18T19:25:24,227 copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools 2025-11-18T19:25:24,229 copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools 2025-11-18T19:25:24,231 copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools 2025-11-18T19:25:24,233 creating build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,234 copying galaxy/tool_util/linters/datatypes.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,236 copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,238 copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,240 copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,244 copying galaxy/tool_util/linters/output.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,246 copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,248 copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,250 copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,251 copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,254 copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,256 copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,257 copying galaxy/tool_util/linters/xsd.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,259 copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,261 copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,264 creating build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,265 copying galaxy/tool_util/verify/codegen.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,267 copying galaxy/tool_util/verify/parse.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,270 copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,273 copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,275 copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,279 copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,281 copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,283 copying galaxy/tool_util/verify/_types.py -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,285 creating build/lib/galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,286 copying galaxy/tool_util/unittest_utils/parameters.py -> build/lib/galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,288 copying galaxy/tool_util/unittest_utils/interactor.py -> build/lib/galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,290 copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,292 copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,295 creating build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,296 copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,298 copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,299 copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,302 copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,305 copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,306 copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,309 copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,311 copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,313 copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,316 copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,318 copying galaxy/tool_util/deps/container_volumes.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,320 copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,322 copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,325 copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,326 copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,329 copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps 2025-11-18T19:25:24,332 creating build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,333 copying galaxy/tool_util/parameters/convert.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,335 copying galaxy/tool_util/parameters/model_validation.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,337 copying galaxy/tool_util/parameters/__init__.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,339 copying galaxy/tool_util/parameters/factory.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,341 copying galaxy/tool_util/parameters/case.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,344 copying galaxy/tool_util/parameters/state.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,346 copying galaxy/tool_util/parameters/json.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,348 copying galaxy/tool_util/parameters/visitor.py -> build/lib/galaxy/tool_util/parameters 2025-11-18T19:25:24,350 creating build/lib/galaxy/tool_util/ontologies 2025-11-18T19:25:24,351 copying galaxy/tool_util/ontologies/__init__.py -> build/lib/galaxy/tool_util/ontologies 2025-11-18T19:25:24,353 copying galaxy/tool_util/ontologies/ontology_data.py -> build/lib/galaxy/tool_util/ontologies 2025-11-18T19:25:24,355 creating build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,356 copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,359 copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,361 copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,363 copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,365 copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,368 copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,370 copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,372 copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl 2025-11-18T19:25:24,375 creating build/lib/galaxy/tool_util/toolbox 2025-11-18T19:25:24,376 copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox 2025-11-18T19:25:24,379 copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox 2025-11-18T19:25:24,381 copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox 2025-11-18T19:25:24,383 copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox 2025-11-18T19:25:24,386 copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox 2025-11-18T19:25:24,388 copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox 2025-11-18T19:25:24,391 creating build/lib/galaxy/tool_util/data/bundles 2025-11-18T19:25:24,392 copying galaxy/tool_util/data/bundles/__init__.py -> build/lib/galaxy/tool_util/data/bundles 2025-11-18T19:25:24,393 copying galaxy/tool_util/data/bundles/models.py -> build/lib/galaxy/tool_util/data/bundles 2025-11-18T19:25:24,396 creating build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,397 copying galaxy/tool_util/verify/asserts/image.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,400 copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,402 copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,404 copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,406 copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,409 copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,411 copying galaxy/tool_util/verify/asserts/json.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,413 copying galaxy/tool_util/verify/asserts/_types.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,414 copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,416 copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,418 copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,421 creating build/lib/galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,422 copying galaxy/tool_util/deps/container_resolvers/test.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,423 copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,426 copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,427 copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,431 creating build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,432 copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,434 copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,436 copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,439 copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,441 copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,443 copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,445 copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,447 copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,450 copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,452 copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,455 creating build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,456 copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,459 copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,461 copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,463 copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,465 copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,466 copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,468 copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,471 copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,473 copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,476 copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,478 copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,480 copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,483 creating build/lib/galaxy/tool_util/parameters/scripts 2025-11-18T19:25:24,484 copying galaxy/tool_util/parameters/scripts/__init__.py -> build/lib/galaxy/tool_util/parameters/scripts 2025-11-18T19:25:24,485 copying galaxy/tool_util/parameters/scripts/validate_test_cases.py -> build/lib/galaxy/tool_util/parameters/scripts 2025-11-18T19:25:24,488 creating build/lib/galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:24,489 copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:24,491 copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:24,492 copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:24,495 creating build/lib/galaxy/tool_util/toolbox/views 2025-11-18T19:25:24,496 copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views 2025-11-18T19:25:24,498 copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views 2025-11-18T19:25:24,499 copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views 2025-11-18T19:25:24,501 copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views 2025-11-18T19:25:24,503 copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views 2025-11-18T19:25:24,506 copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views 2025-11-18T19:25:24,508 creating build/lib/galaxy/tool_util/toolbox/filters 2025-11-18T19:25:24,509 copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters 2025-11-18T19:25:24,511 running egg_info 2025-11-18T19:25:24,522 writing galaxy_tool_util.egg-info/PKG-INFO 2025-11-18T19:25:24,530 writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt 2025-11-18T19:25:24,531 writing entry points to galaxy_tool_util.egg-info/entry_points.txt 2025-11-18T19:25:24,534 writing requirements to galaxy_tool_util.egg-info/requires.txt 2025-11-18T19:25:24,535 writing top-level names to galaxy_tool_util.egg-info/top_level.txt 2025-11-18T19:25:24,570 reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2025-11-18T19:25:24,581 reading manifest template 'MANIFEST.in' 2025-11-18T19:25:24,586 adding license file 'LICENSE' 2025-11-18T19:25:24,596 writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt' 2025-11-18T19:25:24,600 /tmp/pip-build-env-60gcffha/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tool_util.xsd' is absent from the `packages` configuration. 2025-11-18T19:25:24,601 !! 2025-11-18T19:25:24,602 ******************************************************************************** 2025-11-18T19:25:24,602 ############################ 2025-11-18T19:25:24,603 # Package would be ignored # 2025-11-18T19:25:24,603 ############################ 2025-11-18T19:25:24,604 Python recognizes 'galaxy.tool_util.xsd' as an importable package[^1], 2025-11-18T19:25:24,605 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:24,606 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:24,606 package, please make sure that 'galaxy.tool_util.xsd' is explicitly added 2025-11-18T19:25:24,607 to the `packages` configuration field. 2025-11-18T19:25:24,608 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:24,609 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:24,610 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:24,610 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:24,611 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:24,612 If you don't want 'galaxy.tool_util.xsd' to be distributed and are 2025-11-18T19:25:24,612 already explicitly excluding 'galaxy.tool_util.xsd' via 2025-11-18T19:25:24,613 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:24,613 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:24,614 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:24,615 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:24,615 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:24,617 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:24,617 even if it does not contain any `.py` files. 2025-11-18T19:25:24,618 On the other hand, currently there is no concept of package data 2025-11-18T19:25:24,618 directory, all directories are treated like packages. 2025-11-18T19:25:24,619 ******************************************************************************** 2025-11-18T19:25:24,620 !! 2025-11-18T19:25:24,620 check.warn(importable) 2025-11-18T19:25:24,621 copying galaxy/py.typed -> build/lib/galaxy 2025-11-18T19:25:24,622 creating build/lib/galaxy/tool_util/xsd 2025-11-18T19:25:24,623 copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd 2025-11-18T19:25:24,625 copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd 2025-11-18T19:25:24,627 copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd 2025-11-18T19:25:24,630 copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd 2025-11-18T19:25:24,638 copying galaxy/tool_util/upgrade/upgrade_codes.json -> build/lib/galaxy/tool_util/upgrade 2025-11-18T19:25:24,641 copying galaxy/tool_util/linters/datatypes_conf.xml.sample -> build/lib/galaxy/tool_util/linters 2025-11-18T19:25:24,645 copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify 2025-11-18T19:25:24,648 copying galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2025-11-18T19:25:24,651 copying galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2025-11-18T19:25:24,653 copying galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/lib/galaxy/tool_util/ontologies 2025-11-18T19:25:24,655 copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,657 copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,660 copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters 2025-11-18T19:25:24,687 installing to build/bdist.linux-armv7l/wheel 2025-11-18T19:25:24,688 running install 2025-11-18T19:25:24,712 running install_lib 2025-11-18T19:25:24,721 creating build/bdist.linux-armv7l/wheel 2025-11-18T19:25:24,722 creating build/bdist.linux-armv7l/wheel/galaxy 2025-11-18T19:25:24,724 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util 2025-11-18T19:25:24,726 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/upgrade 2025-11-18T19:25:24,727 copying build/lib/galaxy/tool_util/upgrade/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade 2025-11-18T19:25:24,729 copying build/lib/galaxy/tool_util/upgrade/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade 2025-11-18T19:25:24,731 copying build/lib/galaxy/tool_util/upgrade/upgrade_codes.json -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade 2025-11-18T19:25:24,734 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations 2025-11-18T19:25:24,735 copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations 2025-11-18T19:25:24,737 copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations 2025-11-18T19:25:24,739 copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations 2025-11-18T19:25:24,740 copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations 2025-11-18T19:25:24,742 copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:24,744 copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:24,746 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client 2025-11-18T19:25:24,747 copying build/lib/galaxy/tool_util/client/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client 2025-11-18T19:25:24,749 copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client 2025-11-18T19:25:24,751 copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client 2025-11-18T19:25:24,753 copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:24,755 copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:24,758 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser 2025-11-18T19:25:24,759 copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,761 copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,764 copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,767 copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,769 copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,771 copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,773 copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,775 copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,777 copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,780 copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,783 copying build/lib/galaxy/tool_util/parser/parameter_validators.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,785 copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser 2025-11-18T19:25:24,787 copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:24,790 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data 2025-11-18T19:25:24,791 copying build/lib/galaxy/tool_util/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data 2025-11-18T19:25:24,794 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles 2025-11-18T19:25:24,795 copying build/lib/galaxy/tool_util/data/bundles/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data/bundles 2025-11-18T19:25:24,797 copying build/lib/galaxy/tool_util/data/bundles/models.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data/bundles 2025-11-18T19:25:24,799 copying build/lib/galaxy/tool_util/data/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data 2025-11-18T19:25:24,801 copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:24,803 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools 2025-11-18T19:25:24,804 copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools 2025-11-18T19:25:24,806 copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools 2025-11-18T19:25:24,808 copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools 2025-11-18T19:25:24,810 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters 2025-11-18T19:25:24,811 copying build/lib/galaxy/tool_util/linters/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,813 copying build/lib/galaxy/tool_util/linters/datatypes_conf.xml.sample -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,818 copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,820 copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,822 copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,825 copying build/lib/galaxy/tool_util/linters/output.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,827 copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,829 copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,831 copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,833 copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,835 copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,837 copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,839 copying build/lib/galaxy/tool_util/linters/xsd.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,841 copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,843 copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters 2025-11-18T19:25:24,846 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify 2025-11-18T19:25:24,847 copying build/lib/galaxy/tool_util/verify/codegen.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,849 copying build/lib/galaxy/tool_util/verify/parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,852 copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,854 copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,857 copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,861 copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,864 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,865 copying build/lib/galaxy/tool_util/verify/asserts/image.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,867 copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,869 copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,871 copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,873 copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,875 copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,877 copying build/lib/galaxy/tool_util/verify/asserts/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,879 copying build/lib/galaxy/tool_util/verify/asserts/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,881 copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,883 copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,885 copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts 2025-11-18T19:25:24,887 copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,888 copying build/lib/galaxy/tool_util/verify/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,890 copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify 2025-11-18T19:25:24,892 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,893 copying build/lib/galaxy/tool_util/unittest_utils/parameters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,895 copying build/lib/galaxy/tool_util/unittest_utils/interactor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,897 copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,899 copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils 2025-11-18T19:25:24,901 copying build/lib/galaxy/tool_util/validate_test_format.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:24,903 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd 2025-11-18T19:25:24,904 copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd 2025-11-18T19:25:24,906 copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd 2025-11-18T19:25:24,913 copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd 2025-11-18T19:25:24,915 copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd 2025-11-18T19:25:24,918 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps 2025-11-18T19:25:24,919 copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,921 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,922 copying build/lib/galaxy/tool_util/deps/container_resolvers/test.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,924 copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,927 copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,928 copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers 2025-11-18T19:25:24,931 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,932 copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,934 copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,937 copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,939 copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,941 copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,943 copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,945 copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,947 copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,949 copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,951 copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,953 copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers 2025-11-18T19:25:24,956 copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,958 copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,960 copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,962 copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,964 copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,967 copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,970 copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,972 copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,974 copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,976 copying build/lib/galaxy/tool_util/deps/container_volumes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,978 copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,981 copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:24,983 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,984 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,988 copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,992 copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,994 copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,996 copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,998 copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:24,999 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:25,001 copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:25,004 copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:25,006 copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:25,008 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:25,011 copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:25,013 copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled 2025-11-18T19:25:25,015 copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:25,017 copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:25,019 copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps 2025-11-18T19:25:25,022 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parameters 2025-11-18T19:25:25,023 copying build/lib/galaxy/tool_util/parameters/convert.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,026 copying build/lib/galaxy/tool_util/parameters/model_validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,028 copying build/lib/galaxy/tool_util/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,030 copying build/lib/galaxy/tool_util/parameters/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,033 copying build/lib/galaxy/tool_util/parameters/case.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,035 copying build/lib/galaxy/tool_util/parameters/state.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,037 copying build/lib/galaxy/tool_util/parameters/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,039 copying build/lib/galaxy/tool_util/parameters/visitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters 2025-11-18T19:25:25,042 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parameters/scripts 2025-11-18T19:25:25,043 copying build/lib/galaxy/tool_util/parameters/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters/scripts 2025-11-18T19:25:25,044 copying build/lib/galaxy/tool_util/parameters/scripts/validate_test_cases.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters/scripts 2025-11-18T19:25:25,046 copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:25,049 copying build/lib/galaxy/tool_util/version.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:25,051 copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:25,053 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies 2025-11-18T19:25:25,054 copying build/lib/galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies 2025-11-18T19:25:25,056 copying build/lib/galaxy/tool_util/ontologies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies 2025-11-18T19:25:25,057 copying build/lib/galaxy/tool_util/ontologies/ontology_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies 2025-11-18T19:25:25,059 copying build/lib/galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies 2025-11-18T19:25:25,062 copying build/lib/galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies 2025-11-18T19:25:25,064 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl 2025-11-18T19:25:25,065 copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,067 copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,069 copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,071 copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,073 copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,075 copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,078 copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,080 copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl 2025-11-18T19:25:25,084 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox 2025-11-18T19:25:25,085 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:25,086 copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:25,088 copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:25,090 copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages 2025-11-18T19:25:25,092 copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox 2025-11-18T19:25:25,094 copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox 2025-11-18T19:25:25,097 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views 2025-11-18T19:25:25,098 copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views 2025-11-18T19:25:25,100 copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views 2025-11-18T19:25:25,101 copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views 2025-11-18T19:25:25,103 copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views 2025-11-18T19:25:25,105 copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views 2025-11-18T19:25:25,108 copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views 2025-11-18T19:25:25,110 creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters 2025-11-18T19:25:25,111 copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/filters 2025-11-18T19:25:25,113 copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/filters 2025-11-18T19:25:25,115 copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox 2025-11-18T19:25:25,117 copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox 2025-11-18T19:25:25,120 copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox 2025-11-18T19:25:25,122 copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox 2025-11-18T19:25:25,124 copying build/lib/galaxy/tool_util/model_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util 2025-11-18T19:25:25,126 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2025-11-18T19:25:25,128 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-11-18T19:25:25,129 running install_egg_info 2025-11-18T19:25:25,143 Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_tool_util-25.0.4-py3.11.egg-info 2025-11-18T19:25:25,155 running install_scripts 2025-11-18T19:25:25,167 creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-25.0.4.dist-info/WHEEL 2025-11-18T19:25:25,170 creating '/tmp/pip-wheel-5py5h_8v/.tmp-i7_2awz3/galaxy_tool_util-25.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-18T19:25:25,172 adding 'galaxy/__init__.py' 2025-11-18T19:25:25,173 adding 'galaxy/py.typed' 2025-11-18T19:25:25,175 adding 'galaxy/tool_util/__init__.py' 2025-11-18T19:25:25,177 adding 'galaxy/tool_util/edam_util.py' 2025-11-18T19:25:25,178 adding 'galaxy/tool_util/fetcher.py' 2025-11-18T19:25:25,180 adding 'galaxy/tool_util/lint.py' 2025-11-18T19:25:25,182 adding 'galaxy/tool_util/loader.py' 2025-11-18T19:25:25,184 adding 'galaxy/tool_util/loader_directory.py' 2025-11-18T19:25:25,185 adding 'galaxy/tool_util/model_factory.py' 2025-11-18T19:25:25,187 adding 'galaxy/tool_util/output_checker.py' 2025-11-18T19:25:25,189 adding 'galaxy/tool_util/provided_metadata.py' 2025-11-18T19:25:25,190 adding 'galaxy/tool_util/validate_test_format.py' 2025-11-18T19:25:25,191 adding 'galaxy/tool_util/version.py' 2025-11-18T19:25:25,193 adding 'galaxy/tool_util/biotools/__init__.py' 2025-11-18T19:25:25,194 adding 'galaxy/tool_util/biotools/interface.py' 2025-11-18T19:25:25,196 adding 'galaxy/tool_util/biotools/source.py' 2025-11-18T19:25:25,197 adding 'galaxy/tool_util/client/__init__.py' 2025-11-18T19:25:25,199 adding 'galaxy/tool_util/client/landing.py' 2025-11-18T19:25:25,201 adding 'galaxy/tool_util/client/staging.py' 2025-11-18T19:25:25,203 adding 'galaxy/tool_util/cwl/__init__.py' 2025-11-18T19:25:25,204 adding 'galaxy/tool_util/cwl/cwltool_deps.py' 2025-11-18T19:25:25,210 adding 'galaxy/tool_util/cwl/parser.py' 2025-11-18T19:25:25,213 adding 'galaxy/tool_util/cwl/representation.py' 2025-11-18T19:25:25,214 adding 'galaxy/tool_util/cwl/runnable.py' 2025-11-18T19:25:25,216 adding 'galaxy/tool_util/cwl/runtime_actions.py' 2025-11-18T19:25:25,217 adding 'galaxy/tool_util/cwl/schema.py' 2025-11-18T19:25:25,220 adding 'galaxy/tool_util/cwl/util.py' 2025-11-18T19:25:25,228 adding 'galaxy/tool_util/data/__init__.py' 2025-11-18T19:25:25,230 adding 'galaxy/tool_util/data/_schema.py' 2025-11-18T19:25:25,232 adding 'galaxy/tool_util/data/bundles/__init__.py' 2025-11-18T19:25:25,234 adding 'galaxy/tool_util/data/bundles/models.py' 2025-11-18T19:25:25,238 adding 'galaxy/tool_util/deps/__init__.py' 2025-11-18T19:25:25,240 adding 'galaxy/tool_util/deps/brew_exts.py' 2025-11-18T19:25:25,242 adding 'galaxy/tool_util/deps/brew_util.py' 2025-11-18T19:25:25,243 adding 'galaxy/tool_util/deps/commands.py' 2025-11-18T19:25:25,244 adding 'galaxy/tool_util/deps/conda_compat.py' 2025-11-18T19:25:25,247 adding 'galaxy/tool_util/deps/conda_util.py' 2025-11-18T19:25:25,250 adding 'galaxy/tool_util/deps/container_classes.py' 2025-11-18T19:25:25,252 adding 'galaxy/tool_util/deps/container_volumes.py' 2025-11-18T19:25:25,254 adding 'galaxy/tool_util/deps/containers.py' 2025-11-18T19:25:25,256 adding 'galaxy/tool_util/deps/dependencies.py' 2025-11-18T19:25:25,258 adding 'galaxy/tool_util/deps/docker_util.py' 2025-11-18T19:25:25,259 adding 'galaxy/tool_util/deps/dockerfiles.py' 2025-11-18T19:25:25,260 adding 'galaxy/tool_util/deps/installable.py' 2025-11-18T19:25:25,262 adding 'galaxy/tool_util/deps/requirements.py' 2025-11-18T19:25:25,264 adding 'galaxy/tool_util/deps/singularity_util.py' 2025-11-18T19:25:25,266 adding 'galaxy/tool_util/deps/views.py' 2025-11-18T19:25:25,268 adding 'galaxy/tool_util/deps/container_resolvers/__init__.py' 2025-11-18T19:25:25,270 adding 'galaxy/tool_util/deps/container_resolvers/explicit.py' 2025-11-18T19:25:25,273 adding 'galaxy/tool_util/deps/container_resolvers/mulled.py' 2025-11-18T19:25:25,274 adding 'galaxy/tool_util/deps/container_resolvers/test.py' 2025-11-18T19:25:25,276 adding 'galaxy/tool_util/deps/mulled/__init__.py' 2025-11-18T19:25:25,277 adding 'galaxy/tool_util/deps/mulled/_cli.py' 2025-11-18T19:25:25,279 adding 'galaxy/tool_util/deps/mulled/get_tests.py' 2025-11-18T19:25:25,280 adding 'galaxy/tool_util/deps/mulled/invfile.lua' 2025-11-18T19:25:25,284 adding 'galaxy/tool_util/deps/mulled/mulled_build.py' 2025-11-18T19:25:25,285 adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py' 2025-11-18T19:25:25,287 adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py' 2025-11-18T19:25:25,288 adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py' 2025-11-18T19:25:25,289 adding 'galaxy/tool_util/deps/mulled/mulled_hash.py' 2025-11-18T19:25:25,291 adding 'galaxy/tool_util/deps/mulled/mulled_list.py' 2025-11-18T19:25:25,294 adding 'galaxy/tool_util/deps/mulled/mulled_search.py' 2025-11-18T19:25:25,296 adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py' 2025-11-18T19:25:25,299 adding 'galaxy/tool_util/deps/mulled/util.py' 2025-11-18T19:25:25,301 adding 'galaxy/tool_util/deps/resolvers/__init__.py' 2025-11-18T19:25:25,303 adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py' 2025-11-18T19:25:25,306 adding 'galaxy/tool_util/deps/resolvers/conda.py' 2025-11-18T19:25:25,307 adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml' 2025-11-18T19:25:25,309 adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py' 2025-11-18T19:25:25,310 adding 'galaxy/tool_util/deps/resolvers/homebrew.py' 2025-11-18T19:25:25,312 adding 'galaxy/tool_util/deps/resolvers/lmod.py' 2025-11-18T19:25:25,314 adding 'galaxy/tool_util/deps/resolvers/modules.py' 2025-11-18T19:25:25,315 adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py' 2025-11-18T19:25:25,317 adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py' 2025-11-18T19:25:25,319 adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py' 2025-11-18T19:25:25,321 adding 'galaxy/tool_util/linters/__init__.py' 2025-11-18T19:25:25,322 adding 'galaxy/tool_util/linters/_util.py' 2025-11-18T19:25:25,323 adding 'galaxy/tool_util/linters/citations.py' 2025-11-18T19:25:25,324 adding 'galaxy/tool_util/linters/command.py' 2025-11-18T19:25:25,326 adding 'galaxy/tool_util/linters/cwl.py' 2025-11-18T19:25:25,327 adding 'galaxy/tool_util/linters/datatypes.py' 2025-11-18T19:25:25,338 adding 'galaxy/tool_util/linters/datatypes_conf.xml.sample' 2025-11-18T19:25:25,340 adding 'galaxy/tool_util/linters/general.py' 2025-11-18T19:25:25,342 adding 'galaxy/tool_util/linters/help.py' 2025-11-18T19:25:25,346 adding 'galaxy/tool_util/linters/inputs.py' 2025-11-18T19:25:25,348 adding 'galaxy/tool_util/linters/output.py' 2025-11-18T19:25:25,350 adding 'galaxy/tool_util/linters/stdio.py' 2025-11-18T19:25:25,352 adding 'galaxy/tool_util/linters/tests.py' 2025-11-18T19:25:25,353 adding 'galaxy/tool_util/linters/xml_order.py' 2025-11-18T19:25:25,355 adding 'galaxy/tool_util/linters/xsd.py' 2025-11-18T19:25:25,356 adding 'galaxy/tool_util/locations/__init__.py' 2025-11-18T19:25:25,358 adding 'galaxy/tool_util/locations/dockstore.py' 2025-11-18T19:25:25,359 adding 'galaxy/tool_util/locations/file.py' 2025-11-18T19:25:25,360 adding 'galaxy/tool_util/locations/http.py' 2025-11-18T19:25:25,362 adding 'galaxy/tool_util/ontologies/__init__.py' 2025-11-18T19:25:25,367 adding 'galaxy/tool_util/ontologies/biotools_mappings.tsv' 2025-11-18T19:25:25,369 adding 'galaxy/tool_util/ontologies/edam_operation_mappings.tsv' 2025-11-18T19:25:25,370 adding 'galaxy/tool_util/ontologies/edam_topic_mappings.tsv' 2025-11-18T19:25:25,371 adding 'galaxy/tool_util/ontologies/ontology_data.py' 2025-11-18T19:25:25,373 adding 'galaxy/tool_util/parameters/__init__.py' 2025-11-18T19:25:25,376 adding 'galaxy/tool_util/parameters/case.py' 2025-11-18T19:25:25,377 adding 'galaxy/tool_util/parameters/convert.py' 2025-11-18T19:25:25,380 adding 'galaxy/tool_util/parameters/factory.py' 2025-11-18T19:25:25,381 adding 'galaxy/tool_util/parameters/json.py' 2025-11-18T19:25:25,382 adding 'galaxy/tool_util/parameters/model_validation.py' 2025-11-18T19:25:25,384 adding 'galaxy/tool_util/parameters/state.py' 2025-11-18T19:25:25,385 adding 'galaxy/tool_util/parameters/visitor.py' 2025-11-18T19:25:25,387 adding 'galaxy/tool_util/parameters/scripts/__init__.py' 2025-11-18T19:25:25,388 adding 'galaxy/tool_util/parameters/scripts/validate_test_cases.py' 2025-11-18T19:25:25,390 adding 'galaxy/tool_util/parser/__init__.py' 2025-11-18T19:25:25,392 adding 'galaxy/tool_util/parser/cwl.py' 2025-11-18T19:25:25,393 adding 'galaxy/tool_util/parser/factory.py' 2025-11-18T19:25:25,397 adding 'galaxy/tool_util/parser/interface.py' 2025-11-18T19:25:25,400 adding 'galaxy/tool_util/parser/output_actions.py' 2025-11-18T19:25:25,402 adding 'galaxy/tool_util/parser/output_collection_def.py' 2025-11-18T19:25:25,404 adding 'galaxy/tool_util/parser/output_objects.py' 2025-11-18T19:25:25,406 adding 'galaxy/tool_util/parser/parameter_validators.py' 2025-11-18T19:25:25,407 adding 'galaxy/tool_util/parser/stdio.py' 2025-11-18T19:25:25,409 adding 'galaxy/tool_util/parser/util.py' 2025-11-18T19:25:25,416 adding 'galaxy/tool_util/parser/xml.py' 2025-11-18T19:25:25,419 adding 'galaxy/tool_util/parser/yaml.py' 2025-11-18T19:25:25,421 adding 'galaxy/tool_util/toolbox/__init__.py' 2025-11-18T19:25:25,429 adding 'galaxy/tool_util/toolbox/base.py' 2025-11-18T19:25:25,431 adding 'galaxy/tool_util/toolbox/integrated_panel.py' 2025-11-18T19:25:25,433 adding 'galaxy/tool_util/toolbox/panel.py' 2025-11-18T19:25:25,435 adding 'galaxy/tool_util/toolbox/parser.py' 2025-11-18T19:25:25,436 adding 'galaxy/tool_util/toolbox/watcher.py' 2025-11-18T19:25:25,438 adding 'galaxy/tool_util/toolbox/filters/__init__.py' 2025-11-18T19:25:25,440 adding 'galaxy/tool_util/toolbox/filters/examples.py.sample' 2025-11-18T19:25:25,441 adding 'galaxy/tool_util/toolbox/lineages/__init__.py' 2025-11-18T19:25:25,443 adding 'galaxy/tool_util/toolbox/lineages/factory.py' 2025-11-18T19:25:25,444 adding 'galaxy/tool_util/toolbox/lineages/interface.py' 2025-11-18T19:25:25,446 adding 'galaxy/tool_util/toolbox/views/__init__.py' 2025-11-18T19:25:25,447 adding 'galaxy/tool_util/toolbox/views/definitions.py' 2025-11-18T19:25:25,448 adding 'galaxy/tool_util/toolbox/views/edam.py' 2025-11-18T19:25:25,450 adding 'galaxy/tool_util/toolbox/views/interface.py' 2025-11-18T19:25:25,451 adding 'galaxy/tool_util/toolbox/views/sources.py' 2025-11-18T19:25:25,452 adding 'galaxy/tool_util/toolbox/views/static.py' 2025-11-18T19:25:25,454 adding 'galaxy/tool_util/unittest_utils/__init__.py' 2025-11-18T19:25:25,455 adding 'galaxy/tool_util/unittest_utils/interactor.py' 2025-11-18T19:25:25,456 adding 'galaxy/tool_util/unittest_utils/parameters.py' 2025-11-18T19:25:25,457 adding 'galaxy/tool_util/unittest_utils/sample_data.py' 2025-11-18T19:25:25,460 adding 'galaxy/tool_util/upgrade/__init__.py' 2025-11-18T19:25:25,461 adding 'galaxy/tool_util/upgrade/script.py' 2025-11-18T19:25:25,462 adding 'galaxy/tool_util/upgrade/upgrade_codes.json' 2025-11-18T19:25:25,466 adding 'galaxy/tool_util/verify/__init__.py' 2025-11-18T19:25:25,468 adding 'galaxy/tool_util/verify/_types.py' 2025-11-18T19:25:25,470 adding 'galaxy/tool_util/verify/codegen.py' 2025-11-18T19:25:25,480 adding 'galaxy/tool_util/verify/interactor.py' 2025-11-18T19:25:25,483 adding 'galaxy/tool_util/verify/parse.py' 2025-11-18T19:25:25,486 adding 'galaxy/tool_util/verify/script.py' 2025-11-18T19:25:25,488 adding 'galaxy/tool_util/verify/test_config.sample.yml' 2025-11-18T19:25:25,489 adding 'galaxy/tool_util/verify/test_data.py' 2025-11-18T19:25:25,490 adding 'galaxy/tool_util/verify/wait.py' 2025-11-18T19:25:25,492 adding 'galaxy/tool_util/verify/asserts/__init__.py' 2025-11-18T19:25:25,493 adding 'galaxy/tool_util/verify/asserts/_types.py' 2025-11-18T19:25:25,495 adding 'galaxy/tool_util/verify/asserts/_util.py' 2025-11-18T19:25:25,496 adding 'galaxy/tool_util/verify/asserts/archive.py' 2025-11-18T19:25:25,498 adding 'galaxy/tool_util/verify/asserts/hdf5.py' 2025-11-18T19:25:25,501 adding 'galaxy/tool_util/verify/asserts/image.py' 2025-11-18T19:25:25,502 adding 'galaxy/tool_util/verify/asserts/json.py' 2025-11-18T19:25:25,503 adding 'galaxy/tool_util/verify/asserts/size.py' 2025-11-18T19:25:25,505 adding 'galaxy/tool_util/verify/asserts/tabular.py' 2025-11-18T19:25:25,506 adding 'galaxy/tool_util/verify/asserts/text.py' 2025-11-18T19:25:25,508 adding 'galaxy/tool_util/verify/asserts/xml.py' 2025-11-18T19:25:25,510 adding 'galaxy/tool_util/xsd/LICENSE' 2025-11-18T19:25:25,512 adding 'galaxy/tool_util/xsd/README.md' 2025-11-18T19:25:25,513 adding 'galaxy/tool_util/xsd/galaxy.jxb' 2025-11-18T19:25:25,552 adding 'galaxy/tool_util/xsd/galaxy.xsd' 2025-11-18T19:25:25,558 adding 'galaxy_tool_util-25.0.4.dist-info/licenses/LICENSE' 2025-11-18T19:25:25,563 adding 'galaxy_tool_util-25.0.4.dist-info/METADATA' 2025-11-18T19:25:25,564 adding 'galaxy_tool_util-25.0.4.dist-info/WHEEL' 2025-11-18T19:25:25,565 adding 'galaxy_tool_util-25.0.4.dist-info/entry_points.txt' 2025-11-18T19:25:25,566 adding 'galaxy_tool_util-25.0.4.dist-info/top_level.txt' 2025-11-18T19:25:25,569 adding 'galaxy_tool_util-25.0.4.dist-info/RECORD' 2025-11-18T19:25:25,578 removing build/bdist.linux-armv7l/wheel 2025-11-18T19:25:25,715 Building wheel for galaxy-tool-util (pyproject.toml): finished with status 'done' 2025-11-18T19:25:25,734 Created wheel for galaxy-tool-util: filename=galaxy_tool_util-25.0.4-py3-none-any.whl size=516922 sha256=4a315ec861ce2643bc57ea36d29c53999b133113920ff9c26080378d788febd7 2025-11-18T19:25:25,735 Stored in directory: /tmp/pip-ephem-wheel-cache-wpr5ra79/wheels/95/7d/4f/d57f029db20c6c8a0d5ddd69131d3539bc04327fe88e642dff 2025-11-18T19:25:25,758 Successfully built galaxy-tool-util 2025-11-18T19:25:25,780 Removed build tracker: '/tmp/pip-build-tracker-f86etfgm'