2025-11-18T19:25:19,864 Created temporary directory: /tmp/pip-ephem-wheel-cache-ipttzgc6 2025-11-18T19:25:19,865 Created temporary directory: /tmp/pip-build-tracker-qo2attsc 2025-11-18T19:25:19,866 Initialized build tracking at /tmp/pip-build-tracker-qo2attsc 2025-11-18T19:25:19,866 Created build tracker: /tmp/pip-build-tracker-qo2attsc 2025-11-18T19:25:19,867 Entered build tracker: /tmp/pip-build-tracker-qo2attsc 2025-11-18T19:25:19,867 Created temporary directory: /tmp/pip-wheel-yyzqrnsm 2025-11-18T19:25:19,871 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-18T19:25:19,873 Created temporary directory: /tmp/pip-ephem-wheel-cache-gf19nawd 2025-11-18T19:25:19,894 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-18T19:25:19,897 2 location(s) to search for versions of galaxy-data: 2025-11-18T19:25:19,897 * https://pypi.org/simple/galaxy-data/ 2025-11-18T19:25:19,897 * https://www.piwheels.org/simple/galaxy-data/ 2025-11-18T19:25:19,898 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-data/ 2025-11-18T19:25:19,899 Getting page https://pypi.org/simple/galaxy-data/ 2025-11-18T19:25:19,900 Found index url https://pypi.org/simple 2025-11-18T19:25:20,133 Fetched page https://pypi.org/simple/galaxy-data/ as application/vnd.pypi.simple.v1+json 2025-11-18T19:25:20,147 Found link https://files.pythonhosted.org/packages/1f/fa/d8f43cf473dabba250bd9d5fed96b1a5acc89517739bc26b91489f61fa57/galaxy-data-19.9.0.dev0.tar.gz 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https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-21.9.0-py2.py3-none-any.whl#sha256=7bd7fa30190a424a66c62f96012c6dd667990fc8ae39dcb1e4ddc6811e6c9a4d (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,452 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.9.1-py2.py3-none-any.whl#sha256=6a456ec927643665dae5c649a6a18460d79474bd5e1277274ea2174e952f94c2 (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,452 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.9.0-py2.py3-none-any.whl#sha256=ec937bfcfff347039541431d9724018b14a295ecc49f0831145f8947264a5d3b (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,453 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.5.0-py2.py3-none-any.whl#sha256=7ee3d488fc5ef68f91d03116383adac3f4db74334062abb069386b01b39d80f4 (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,454 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev3-py2.py3-none-any.whl#sha256=52651203dfccbfdf8b37326330598785a8c0002d69a461fba17f6a7031bdce85 (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,454 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev2-py2.py3-none-any.whl#sha256=be58e78b806fa3f85a8a8d45b7f040439a0c95d461003172d2b7b4430002d33f (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,454 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev1-py2.py3-none-any.whl#sha256=ef242b3d745ced066c572d137b43095eb7df42074a5e1e8eca76ea52cf065a92 (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,455 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev0-py3-none-any.whl#sha256=d4831c48a07316758b909a471cb006e270083f3ceccc3d174f78b44b07a914ff (from https://www.piwheels.org/simple/galaxy-data/) 2025-11-18T19:25:20,456 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-data/ 2025-11-18T19:25:20,456 Skipping link: not a file: https://pypi.org/simple/galaxy-data/ 2025-11-18T19:25:20,479 Given no hashes to check 1 links for project 'galaxy-data': discarding no candidates 2025-11-18T19:25:20,497 Collecting galaxy-data==25.0.4 2025-11-18T19:25:20,499 Created temporary directory: /tmp/pip-unpack-ekte4d9n 2025-11-18T19:25:20,732 Downloading galaxy_data-25.0.4.tar.gz (625 kB) 2025-11-18T19:25:21,560 Added galaxy-data==25.0.4 from https://files.pythonhosted.org/packages/11/cc/6fd2611fc579fcd2f0e903f82f479a44e130e0bdae6e546f92c37f157097/galaxy_data-25.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-qo2attsc' 2025-11-18T19:25:21,563 Created temporary directory: /tmp/pip-build-env-12y4j71z 2025-11-18T19:25:21,567 Installing build dependencies: started 2025-11-18T19:25:21,568 Running command pip subprocess to install build dependencies 2025-11-18T19:25:22,737 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-18T19:25:23,359 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-18T19:25:23,381 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-18T19:25:25,111 Collecting setuptools 2025-11-18T19:25:25,218 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-18T19:25:28,131 Installing collected packages: setuptools 2025-11-18T19:25:31,668 Successfully installed setuptools-80.9.0 2025-11-18T19:25:31,932 Installing build dependencies: finished with status 'done' 2025-11-18T19:25:31,938 Getting requirements to build wheel: started 2025-11-18T19:25:31,939 Running command Getting requirements to build wheel 2025-11-18T19:25:32,510 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-18T19:25:32,511 !! 2025-11-18T19:25:32,512 ******************************************************************************** 2025-11-18T19:25:32,512 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-18T19:25:32,513 License :: OSI Approved :: Academic Free License (AFL) 2025-11-18T19:25:32,514 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-18T19:25:32,514 ******************************************************************************** 2025-11-18T19:25:32,515 !! 2025-11-18T19:25:32,516 self._finalize_license_expression() 2025-11-18T19:25:32,581 running egg_info 2025-11-18T19:25:32,588 writing galaxy_data.egg-info/PKG-INFO 2025-11-18T19:25:32,595 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2025-11-18T19:25:32,597 writing entry points to galaxy_data.egg-info/entry_points.txt 2025-11-18T19:25:32,599 writing requirements to galaxy_data.egg-info/requires.txt 2025-11-18T19:25:32,601 writing top-level names to galaxy_data.egg-info/top_level.txt 2025-11-18T19:25:32,659 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-11-18T19:25:32,693 reading manifest template 'MANIFEST.in' 2025-11-18T19:25:32,733 adding license file 'LICENSE' 2025-11-18T19:25:32,752 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-11-18T19:25:32,842 Getting requirements to build wheel: finished with status 'done' 2025-11-18T19:25:32,845 Created temporary directory: /tmp/pip-modern-metadata-2icpd6_p 2025-11-18T19:25:32,847 Preparing metadata (pyproject.toml): started 2025-11-18T19:25:32,848 Running command Preparing metadata (pyproject.toml) 2025-11-18T19:25:33,398 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-18T19:25:33,398 !! 2025-11-18T19:25:33,399 ******************************************************************************** 2025-11-18T19:25:33,399 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-18T19:25:33,401 License :: OSI Approved :: Academic Free License (AFL) 2025-11-18T19:25:33,402 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-18T19:25:33,403 ******************************************************************************** 2025-11-18T19:25:33,404 !! 2025-11-18T19:25:33,404 self._finalize_license_expression() 2025-11-18T19:25:33,422 running dist_info 2025-11-18T19:25:33,434 creating /tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info 2025-11-18T19:25:33,435 writing /tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/PKG-INFO 2025-11-18T19:25:33,444 writing dependency_links to /tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/dependency_links.txt 2025-11-18T19:25:33,446 writing entry points to /tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/entry_points.txt 2025-11-18T19:25:33,448 writing requirements to /tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/requires.txt 2025-11-18T19:25:33,449 writing top-level names to /tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/top_level.txt 2025-11-18T19:25:33,450 writing manifest file '/tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/SOURCES.txt' 2025-11-18T19:25:33,497 reading manifest file '/tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/SOURCES.txt' 2025-11-18T19:25:33,499 reading manifest template 'MANIFEST.in' 2025-11-18T19:25:33,532 adding license file 'LICENSE' 2025-11-18T19:25:33,545 writing manifest file '/tmp/pip-modern-metadata-2icpd6_p/galaxy_data.egg-info/SOURCES.txt' 2025-11-18T19:25:33,547 creating '/tmp/pip-modern-metadata-2icpd6_p/galaxy_data-25.0.4.dist-info' 2025-11-18T19:25:33,685 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-18T19:25:33,694 Source in /tmp/pip-wheel-yyzqrnsm/galaxy-data_b7ba62f75f884ca1bf518d27e965781d has version 25.0.4, which satisfies requirement galaxy-data==25.0.4 from https://files.pythonhosted.org/packages/11/cc/6fd2611fc579fcd2f0e903f82f479a44e130e0bdae6e546f92c37f157097/galaxy_data-25.0.4.tar.gz 2025-11-18T19:25:33,695 Removed galaxy-data==25.0.4 from https://files.pythonhosted.org/packages/11/cc/6fd2611fc579fcd2f0e903f82f479a44e130e0bdae6e546f92c37f157097/galaxy_data-25.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-qo2attsc' 2025-11-18T19:25:33,709 Created temporary directory: /tmp/pip-unpack-y1w8cz76 2025-11-18T19:25:33,709 Building wheels for collected packages: galaxy-data 2025-11-18T19:25:33,714 Created temporary directory: /tmp/pip-wheel-q9dffon_ 2025-11-18T19:25:33,714 Destination directory: /tmp/pip-wheel-q9dffon_ 2025-11-18T19:25:33,716 Building wheel for galaxy-data (pyproject.toml): started 2025-11-18T19:25:33,717 Running command Building wheel for galaxy-data (pyproject.toml) 2025-11-18T19:25:34,268 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-18T19:25:34,268 !! 2025-11-18T19:25:34,269 ******************************************************************************** 2025-11-18T19:25:34,270 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-18T19:25:34,271 License :: OSI Approved :: Academic Free License (AFL) 2025-11-18T19:25:34,272 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-18T19:25:34,272 ******************************************************************************** 2025-11-18T19:25:34,274 !! 2025-11-18T19:25:34,274 self._finalize_license_expression() 2025-11-18T19:25:34,297 running bdist_wheel 2025-11-18T19:25:34,327 running build 2025-11-18T19:25:34,328 running build_py 2025-11-18T19:25:34,337 creating build/lib/galaxy 2025-11-18T19:25:34,339 copying galaxy/__init__.py -> build/lib/galaxy 2025-11-18T19:25:34,342 creating build/lib/galaxy/datatypes 2025-11-18T19:25:34,343 copying galaxy/datatypes/coverage.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,345 copying galaxy/datatypes/constructive_solid_geometry.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,348 copying galaxy/datatypes/isa.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,351 copying galaxy/datatypes/hdf5.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,353 copying galaxy/datatypes/registry.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,356 copying galaxy/datatypes/annotation.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,358 copying galaxy/datatypes/graph.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,360 copying galaxy/datatypes/ngsindex.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,362 copying galaxy/datatypes/checkers.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,364 copying galaxy/datatypes/gis.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,366 copying galaxy/datatypes/_schema.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,368 copying galaxy/datatypes/chrominfo.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,370 copying galaxy/datatypes/phylip.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,372 copying galaxy/datatypes/blast.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,375 copying galaxy/datatypes/triples.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,377 copying galaxy/datatypes/metacyto.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,379 copying galaxy/datatypes/tabular.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,382 copying galaxy/datatypes/larch.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,384 copying galaxy/datatypes/data.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,388 copying galaxy/datatypes/proteomics.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,390 copying galaxy/datatypes/media.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,393 copying galaxy/datatypes/qiime2.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,395 copying galaxy/datatypes/tracks.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,397 copying galaxy/datatypes/__init__.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,398 copying galaxy/datatypes/anvio.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,400 copying galaxy/datatypes/speech.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,402 copying galaxy/datatypes/plant_tribes.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,404 copying galaxy/datatypes/flow.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,406 copying galaxy/datatypes/interval.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,409 copying galaxy/datatypes/molecules.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,412 copying galaxy/datatypes/assembly.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,415 copying galaxy/datatypes/xml.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,417 copying galaxy/datatypes/chain.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,419 copying galaxy/datatypes/images.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,421 copying galaxy/datatypes/goldenpath.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,424 copying galaxy/datatypes/sequence.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,427 copying galaxy/datatypes/neo4j.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,429 copying galaxy/datatypes/text.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,433 copying galaxy/datatypes/spaln.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,438 copying galaxy/datatypes/upload_util.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,440 copying galaxy/datatypes/qualityscore.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,442 copying galaxy/datatypes/microarrays.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,444 copying galaxy/datatypes/msa.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,446 copying galaxy/datatypes/protocols.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,448 copying galaxy/datatypes/sniff.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,451 copying galaxy/datatypes/metadata.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,453 copying galaxy/datatypes/mothur.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,456 copying galaxy/datatypes/binary.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,460 copying galaxy/datatypes/genetics.py -> build/lib/galaxy/datatypes 2025-11-18T19:25:34,464 creating build/lib/galaxy/security 2025-11-18T19:25:34,465 copying galaxy/security/ssh_util.py -> build/lib/galaxy/security 2025-11-18T19:25:34,467 copying galaxy/security/__init__.py -> build/lib/galaxy/security 2025-11-18T19:25:34,469 copying galaxy/security/object_wrapper.py -> build/lib/galaxy/security 2025-11-18T19:25:34,472 copying galaxy/security/validate_user_input.py -> build/lib/galaxy/security 2025-11-18T19:25:34,474 copying galaxy/security/idencoding.py -> build/lib/galaxy/security 2025-11-18T19:25:34,476 copying galaxy/security/passwords.py -> build/lib/galaxy/security 2025-11-18T19:25:34,478 copying galaxy/security/vault.py -> build/lib/galaxy/security 2025-11-18T19:25:34,481 creating build/lib/galaxy/quota 2025-11-18T19:25:34,482 copying galaxy/quota/_schema.py -> build/lib/galaxy/quota 2025-11-18T19:25:34,484 copying galaxy/quota/__init__.py -> build/lib/galaxy/quota 2025-11-18T19:25:34,487 creating build/lib/galaxy/model 2025-11-18T19:25:34,488 copying galaxy/model/database_heartbeat.py -> build/lib/galaxy/model 2025-11-18T19:25:34,491 copying galaxy/model/item_attrs.py -> build/lib/galaxy/model 2025-11-18T19:25:34,493 copying galaxy/model/custom_types.py -> build/lib/galaxy/model 2025-11-18T19:25:34,496 copying galaxy/model/scoped_session.py -> build/lib/galaxy/model 2025-11-18T19:25:34,498 copying galaxy/model/database_utils.py -> build/lib/galaxy/model 2025-11-18T19:25:34,501 copying galaxy/model/base.py -> build/lib/galaxy/model 2025-11-18T19:25:34,503 copying galaxy/model/index_filter_util.py -> build/lib/galaxy/model 2025-11-18T19:25:34,505 copying galaxy/model/mapping.py -> build/lib/galaxy/model 2025-11-18T19:25:34,507 copying galaxy/model/deferred.py -> build/lib/galaxy/model 2025-11-18T19:25:34,510 copying galaxy/model/__init__.py -> build/lib/galaxy/model 2025-11-18T19:25:34,519 copying galaxy/model/dereference.py -> build/lib/galaxy/model 2025-11-18T19:25:34,522 copying galaxy/model/database_object_names.py -> build/lib/galaxy/model 2025-11-18T19:25:34,524 copying galaxy/model/security.py -> build/lib/galaxy/model 2025-11-18T19:25:34,527 copying galaxy/model/tags.py -> build/lib/galaxy/model 2025-11-18T19:25:34,530 copying galaxy/model/none_like.py -> build/lib/galaxy/model 2025-11-18T19:25:34,531 copying galaxy/model/metadata.py -> build/lib/galaxy/model 2025-11-18T19:25:34,535 creating build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,536 copying galaxy/datatypes/dataproviders/decorators.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,538 copying galaxy/datatypes/dataproviders/chunk.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,540 copying galaxy/datatypes/dataproviders/dataset.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,543 copying galaxy/datatypes/dataproviders/column.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,545 copying galaxy/datatypes/dataproviders/exceptions.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,547 copying galaxy/datatypes/dataproviders/base.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,550 copying galaxy/datatypes/dataproviders/hierarchy.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,552 copying galaxy/datatypes/dataproviders/__init__.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,554 copying galaxy/datatypes/dataproviders/line.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,556 copying galaxy/datatypes/dataproviders/external.py -> build/lib/galaxy/datatypes/dataproviders 2025-11-18T19:25:34,559 creating build/lib/galaxy/datatypes/util 2025-11-18T19:25:34,560 copying galaxy/datatypes/util/__init__.py -> build/lib/galaxy/datatypes/util 2025-11-18T19:25:34,562 copying galaxy/datatypes/util/maf_utilities.py -> build/lib/galaxy/datatypes/util 2025-11-18T19:25:34,564 copying galaxy/datatypes/util/generic_util.py -> build/lib/galaxy/datatypes/util 2025-11-18T19:25:34,566 copying galaxy/datatypes/util/gff_util.py -> build/lib/galaxy/datatypes/util 2025-11-18T19:25:34,570 creating build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,571 copying galaxy/datatypes/converters/interval_to_fli.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,573 copying galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,575 copying galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,577 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,579 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,580 copying galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,582 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,584 copying galaxy/datatypes/converters/fasta_to_len.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,586 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,588 copying galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,590 copying galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,592 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,594 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,596 copying galaxy/datatypes/converters/bed_to_gff_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,597 copying galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,599 copying galaxy/datatypes/converters/maf_to_interval_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,601 copying galaxy/datatypes/converters/interval_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,603 copying galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,605 copying galaxy/datatypes/converters/__init__.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,606 copying galaxy/datatypes/converters/gff_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,608 copying galaxy/datatypes/converters/lped_to_fped_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,610 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,612 copying galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,614 copying galaxy/datatypes/converters/tabular_csv.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,615 copying galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,618 copying galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:34,620 creating build/lib/galaxy/datatypes/display_applications 2025-11-18T19:25:34,621 copying galaxy/datatypes/display_applications/application.py -> build/lib/galaxy/datatypes/display_applications 2025-11-18T19:25:34,623 copying galaxy/datatypes/display_applications/util.py -> build/lib/galaxy/datatypes/display_applications 2025-11-18T19:25:34,625 copying galaxy/datatypes/display_applications/parameters.py -> build/lib/galaxy/datatypes/display_applications 2025-11-18T19:25:34,628 copying galaxy/datatypes/display_applications/__init__.py -> build/lib/galaxy/datatypes/display_applications 2025-11-18T19:25:34,630 creating build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,631 copying galaxy/model/unittest_utils/store_fixtures.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,634 copying galaxy/model/unittest_utils/db_helpers.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,636 copying galaxy/model/unittest_utils/beaker_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,638 copying galaxy/model/unittest_utils/data_app.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,640 copying galaxy/model/unittest_utils/__init__.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,642 copying galaxy/model/unittest_utils/utils.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,643 copying galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,645 copying galaxy/model/unittest_utils/model_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-11-18T19:25:34,648 creating build/lib/galaxy/model/migrations 2025-11-18T19:25:34,649 copying galaxy/model/migrations/util.py -> build/lib/galaxy/model/migrations 2025-11-18T19:25:34,652 copying galaxy/model/migrations/exceptions.py -> build/lib/galaxy/model/migrations 2025-11-18T19:25:34,654 copying galaxy/model/migrations/base.py -> build/lib/galaxy/model/migrations 2025-11-18T19:25:34,657 copying galaxy/model/migrations/dbscript.py -> build/lib/galaxy/model/migrations 2025-11-18T19:25:34,659 copying galaxy/model/migrations/scripts.py -> build/lib/galaxy/model/migrations 2025-11-18T19:25:34,661 copying galaxy/model/migrations/__init__.py -> build/lib/galaxy/model/migrations 2025-11-18T19:25:34,664 creating build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,665 copying galaxy/model/dataset_collections/builder.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,667 copying galaxy/model/dataset_collections/registry.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,669 copying galaxy/model/dataset_collections/matching.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,671 copying galaxy/model/dataset_collections/__init__.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,673 copying galaxy/model/dataset_collections/type_description.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,675 copying galaxy/model/dataset_collections/structure.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,677 copying galaxy/model/dataset_collections/adapters.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,680 copying galaxy/model/dataset_collections/query.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,681 copying galaxy/model/dataset_collections/subcollections.py -> build/lib/galaxy/model/dataset_collections 2025-11-18T19:25:34,684 creating build/lib/galaxy/model/scripts 2025-11-18T19:25:34,685 copying galaxy/model/scripts/history_table_pruner.py -> build/lib/galaxy/model/scripts 2025-11-18T19:25:34,687 copying galaxy/model/scripts/delete_job_metrics.py -> build/lib/galaxy/model/scripts 2025-11-18T19:25:34,689 copying galaxy/model/scripts/prune_history_table.py -> build/lib/galaxy/model/scripts 2025-11-18T19:25:34,691 copying galaxy/model/scripts/delete_galaxy_sessions.py -> build/lib/galaxy/model/scripts 2025-11-18T19:25:34,693 copying galaxy/model/scripts/__init__.py -> build/lib/galaxy/model/scripts 2025-11-18T19:25:34,695 creating build/lib/galaxy/model/tool_shed_install 2025-11-18T19:25:34,696 copying galaxy/model/tool_shed_install/mapping.py -> build/lib/galaxy/model/tool_shed_install 2025-11-18T19:25:34,698 copying galaxy/model/tool_shed_install/__init__.py -> build/lib/galaxy/model/tool_shed_install 2025-11-18T19:25:34,701 creating build/lib/galaxy/model/orm 2025-11-18T19:25:34,702 copying galaxy/model/orm/now.py -> build/lib/galaxy/model/orm 2025-11-18T19:25:34,704 copying galaxy/model/orm/util.py -> build/lib/galaxy/model/orm 2025-11-18T19:25:34,706 copying galaxy/model/orm/engine_factory.py -> build/lib/galaxy/model/orm 2025-11-18T19:25:34,708 copying galaxy/model/orm/scripts.py -> build/lib/galaxy/model/orm 2025-11-18T19:25:34,710 copying galaxy/model/orm/__init__.py -> build/lib/galaxy/model/orm 2025-11-18T19:25:34,713 creating build/lib/galaxy/model/store 2025-11-18T19:25:34,714 copying galaxy/model/store/ro_crate_utils.py -> build/lib/galaxy/model/store 2025-11-18T19:25:34,717 copying galaxy/model/store/build_objects.py -> build/lib/galaxy/model/store 2025-11-18T19:25:34,719 copying galaxy/model/store/load_objects.py -> build/lib/galaxy/model/store 2025-11-18T19:25:34,721 copying galaxy/model/store/discover.py -> build/lib/galaxy/model/store 2025-11-18T19:25:34,724 copying galaxy/model/store/__init__.py -> build/lib/galaxy/model/store 2025-11-18T19:25:34,729 copying galaxy/model/store/_bco_convert_utils.py -> build/lib/galaxy/model/store 2025-11-18T19:25:34,732 creating build/lib/galaxy/model/triggers 2025-11-18T19:25:34,733 copying galaxy/model/triggers/__init__.py -> build/lib/galaxy/model/triggers 2025-11-18T19:25:34,735 copying galaxy/model/triggers/update_audit_table.py -> build/lib/galaxy/model/triggers 2025-11-18T19:25:34,738 creating build/lib/galaxy/model/db 2025-11-18T19:25:34,739 copying galaxy/model/db/library.py -> build/lib/galaxy/model/db 2025-11-18T19:25:34,741 copying galaxy/model/db/role.py -> build/lib/galaxy/model/db 2025-11-18T19:25:34,743 copying galaxy/model/db/user.py -> build/lib/galaxy/model/db 2025-11-18T19:25:34,745 copying galaxy/model/db/__init__.py -> build/lib/galaxy/model/db 2025-11-18T19:25:34,747 creating build/lib/galaxy/model/migrations/data_fixes 2025-11-18T19:25:34,747 copying galaxy/model/migrations/data_fixes/user_table_fixer.py -> build/lib/galaxy/model/migrations/data_fixes 2025-11-18T19:25:34,750 copying galaxy/model/migrations/data_fixes/__init__.py -> build/lib/galaxy/model/migrations/data_fixes 2025-11-18T19:25:34,751 copying galaxy/model/migrations/data_fixes/association_table_fixer.py -> build/lib/galaxy/model/migrations/data_fixes 2025-11-18T19:25:34,754 creating build/lib/galaxy/model/dataset_collections/types 2025-11-18T19:25:34,755 copying galaxy/model/dataset_collections/types/record.py -> build/lib/galaxy/model/dataset_collections/types 2025-11-18T19:25:34,757 copying galaxy/model/dataset_collections/types/semantics.py -> build/lib/galaxy/model/dataset_collections/types 2025-11-18T19:25:34,760 copying galaxy/model/dataset_collections/types/list.py -> build/lib/galaxy/model/dataset_collections/types 2025-11-18T19:25:34,762 copying galaxy/model/dataset_collections/types/paired_or_unpaired.py -> build/lib/galaxy/model/dataset_collections/types 2025-11-18T19:25:34,764 copying galaxy/model/dataset_collections/types/__init__.py -> build/lib/galaxy/model/dataset_collections/types 2025-11-18T19:25:34,766 copying galaxy/model/dataset_collections/types/paired.py -> build/lib/galaxy/model/dataset_collections/types 2025-11-18T19:25:34,767 running egg_info 2025-11-18T19:25:34,781 writing galaxy_data.egg-info/PKG-INFO 2025-11-18T19:25:34,788 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2025-11-18T19:25:34,790 writing entry points to galaxy_data.egg-info/entry_points.txt 2025-11-18T19:25:34,792 writing requirements to galaxy_data.egg-info/requires.txt 2025-11-18T19:25:34,793 writing top-level names to galaxy_data.egg-info/top_level.txt 2025-11-18T19:25:34,823 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-11-18T19:25:34,842 reading manifest template 'MANIFEST.in' 2025-11-18T19:25:34,875 adding license file 'LICENSE' 2025-11-18T19:25:34,894 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-11-18T19:25:34,898 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.biom' is absent from the `packages` configuration. 2025-11-18T19:25:34,899 !! 2025-11-18T19:25:34,900 ******************************************************************************** 2025-11-18T19:25:34,900 ############################ 2025-11-18T19:25:34,901 # Package would be ignored # 2025-11-18T19:25:34,902 ############################ 2025-11-18T19:25:34,902 Python recognizes 'galaxy.datatypes.display_applications.configs.biom' as an importable package[^1], 2025-11-18T19:25:34,903 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:34,904 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:34,905 package, please make sure that 'galaxy.datatypes.display_applications.configs.biom' is explicitly added 2025-11-18T19:25:34,905 to the `packages` configuration field. 2025-11-18T19:25:34,907 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:34,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:34,908 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:34,909 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:34,910 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:34,911 If you don't want 'galaxy.datatypes.display_applications.configs.biom' to be distributed and are 2025-11-18T19:25:34,911 already explicitly excluding 'galaxy.datatypes.display_applications.configs.biom' via 2025-11-18T19:25:34,912 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:34,912 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:34,913 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:34,914 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:34,915 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:34,916 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:34,916 even if it does not contain any `.py` files. 2025-11-18T19:25:34,917 On the other hand, currently there is no concept of package data 2025-11-18T19:25:34,917 directory, all directories are treated like packages. 2025-11-18T19:25:34,918 ******************************************************************************** 2025-11-18T19:25:34,918 !! 2025-11-18T19:25:34,919 check.warn(importable) 2025-11-18T19:25:34,919 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.ensembl' is absent from the `packages` configuration. 2025-11-18T19:25:34,920 !! 2025-11-18T19:25:34,921 ******************************************************************************** 2025-11-18T19:25:34,922 ############################ 2025-11-18T19:25:34,922 # Package would be ignored # 2025-11-18T19:25:34,923 ############################ 2025-11-18T19:25:34,923 Python recognizes 'galaxy.datatypes.display_applications.configs.ensembl' as an importable package[^1], 2025-11-18T19:25:34,924 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:34,925 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:34,926 package, please make sure that 'galaxy.datatypes.display_applications.configs.ensembl' is explicitly added 2025-11-18T19:25:34,926 to the `packages` configuration field. 2025-11-18T19:25:34,927 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:34,928 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:34,929 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:34,930 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:34,931 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:34,932 If you don't want 'galaxy.datatypes.display_applications.configs.ensembl' to be distributed and are 2025-11-18T19:25:34,932 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ensembl' via 2025-11-18T19:25:34,933 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:34,933 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:34,934 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:34,935 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:34,936 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:34,938 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:34,938 even if it does not contain any `.py` files. 2025-11-18T19:25:34,939 On the other hand, currently there is no concept of package data 2025-11-18T19:25:34,939 directory, all directories are treated like packages. 2025-11-18T19:25:34,940 ******************************************************************************** 2025-11-18T19:25:34,940 !! 2025-11-18T19:25:34,941 check.warn(importable) 2025-11-18T19:25:34,941 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.gbrowse' is absent from the `packages` configuration. 2025-11-18T19:25:34,942 !! 2025-11-18T19:25:34,942 ******************************************************************************** 2025-11-18T19:25:34,943 ############################ 2025-11-18T19:25:34,943 # Package would be ignored # 2025-11-18T19:25:34,944 ############################ 2025-11-18T19:25:34,944 Python recognizes 'galaxy.datatypes.display_applications.configs.gbrowse' as an importable package[^1], 2025-11-18T19:25:34,945 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:34,945 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:34,946 package, please make sure that 'galaxy.datatypes.display_applications.configs.gbrowse' is explicitly added 2025-11-18T19:25:34,946 to the `packages` configuration field. 2025-11-18T19:25:34,947 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:34,948 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:34,948 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:34,949 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:34,950 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:34,951 If you don't want 'galaxy.datatypes.display_applications.configs.gbrowse' to be distributed and are 2025-11-18T19:25:34,951 already explicitly excluding 'galaxy.datatypes.display_applications.configs.gbrowse' via 2025-11-18T19:25:34,952 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:34,952 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:34,953 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:34,954 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:34,955 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:34,956 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:34,957 even if it does not contain any `.py` files. 2025-11-18T19:25:34,957 On the other hand, currently there is no concept of package data 2025-11-18T19:25:34,958 directory, all directories are treated like packages. 2025-11-18T19:25:34,958 ******************************************************************************** 2025-11-18T19:25:34,959 !! 2025-11-18T19:25:34,960 check.warn(importable) 2025-11-18T19:25:34,960 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.icn3d' is absent from the `packages` configuration. 2025-11-18T19:25:34,961 !! 2025-11-18T19:25:34,962 ******************************************************************************** 2025-11-18T19:25:34,962 ############################ 2025-11-18T19:25:34,963 # Package would be ignored # 2025-11-18T19:25:34,963 ############################ 2025-11-18T19:25:34,964 Python recognizes 'galaxy.datatypes.display_applications.configs.icn3d' as an importable package[^1], 2025-11-18T19:25:34,964 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:34,965 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:34,966 package, please make sure that 'galaxy.datatypes.display_applications.configs.icn3d' is explicitly added 2025-11-18T19:25:34,966 to the `packages` configuration field. 2025-11-18T19:25:34,967 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:34,967 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:34,968 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:34,969 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:34,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:34,971 If you don't want 'galaxy.datatypes.display_applications.configs.icn3d' to be distributed and are 2025-11-18T19:25:34,971 already explicitly excluding 'galaxy.datatypes.display_applications.configs.icn3d' via 2025-11-18T19:25:34,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:34,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:34,973 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:34,974 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:34,975 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:34,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:34,977 even if it does not contain any `.py` files. 2025-11-18T19:25:34,978 On the other hand, currently there is no concept of package data 2025-11-18T19:25:34,978 directory, all directories are treated like packages. 2025-11-18T19:25:34,979 ******************************************************************************** 2025-11-18T19:25:34,979 !! 2025-11-18T19:25:34,980 check.warn(importable) 2025-11-18T19:25:34,980 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.igb' is absent from the `packages` configuration. 2025-11-18T19:25:34,981 !! 2025-11-18T19:25:34,982 ******************************************************************************** 2025-11-18T19:25:34,983 ############################ 2025-11-18T19:25:34,983 # Package would be ignored # 2025-11-18T19:25:34,984 ############################ 2025-11-18T19:25:34,984 Python recognizes 'galaxy.datatypes.display_applications.configs.igb' as an importable package[^1], 2025-11-18T19:25:34,985 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:34,986 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:34,986 package, please make sure that 'galaxy.datatypes.display_applications.configs.igb' is explicitly added 2025-11-18T19:25:34,987 to the `packages` configuration field. 2025-11-18T19:25:34,988 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:34,988 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:34,989 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:34,990 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:34,991 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:34,992 If you don't want 'galaxy.datatypes.display_applications.configs.igb' to be distributed and are 2025-11-18T19:25:34,993 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igb' via 2025-11-18T19:25:34,993 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:34,994 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:34,994 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:34,995 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:34,996 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:34,998 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:34,998 even if it does not contain any `.py` files. 2025-11-18T19:25:34,998 On the other hand, currently there is no concept of package data 2025-11-18T19:25:34,999 directory, all directories are treated like packages. 2025-11-18T19:25:34,999 ******************************************************************************** 2025-11-18T19:25:35,000 !! 2025-11-18T19:25:35,001 check.warn(importable) 2025-11-18T19:25:35,001 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.igv' is absent from the `packages` configuration. 2025-11-18T19:25:35,002 !! 2025-11-18T19:25:35,003 ******************************************************************************** 2025-11-18T19:25:35,003 ############################ 2025-11-18T19:25:35,004 # Package would be ignored # 2025-11-18T19:25:35,004 ############################ 2025-11-18T19:25:35,005 Python recognizes 'galaxy.datatypes.display_applications.configs.igv' as an importable package[^1], 2025-11-18T19:25:35,005 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,006 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,007 package, please make sure that 'galaxy.datatypes.display_applications.configs.igv' is explicitly added 2025-11-18T19:25:35,007 to the `packages` configuration field. 2025-11-18T19:25:35,009 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,009 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,010 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,011 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,012 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,013 If you don't want 'galaxy.datatypes.display_applications.configs.igv' to be distributed and are 2025-11-18T19:25:35,014 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igv' via 2025-11-18T19:25:35,014 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,015 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,016 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,017 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,018 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,020 even if it does not contain any `.py` files. 2025-11-18T19:25:35,021 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,021 directory, all directories are treated like packages. 2025-11-18T19:25:35,022 ******************************************************************************** 2025-11-18T19:25:35,023 !! 2025-11-18T19:25:35,023 check.warn(importable) 2025-11-18T19:25:35,024 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.image' is absent from the `packages` configuration. 2025-11-18T19:25:35,024 !! 2025-11-18T19:25:35,025 ******************************************************************************** 2025-11-18T19:25:35,026 ############################ 2025-11-18T19:25:35,026 # Package would be ignored # 2025-11-18T19:25:35,026 ############################ 2025-11-18T19:25:35,027 Python recognizes 'galaxy.datatypes.display_applications.configs.image' as an importable package[^1], 2025-11-18T19:25:35,027 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,028 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,029 package, please make sure that 'galaxy.datatypes.display_applications.configs.image' is explicitly added 2025-11-18T19:25:35,029 to the `packages` configuration field. 2025-11-18T19:25:35,030 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,031 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,031 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,032 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,033 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,035 If you don't want 'galaxy.datatypes.display_applications.configs.image' to be distributed and are 2025-11-18T19:25:35,035 already explicitly excluding 'galaxy.datatypes.display_applications.configs.image' via 2025-11-18T19:25:35,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,036 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,037 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,038 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,039 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,040 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,041 even if it does not contain any `.py` files. 2025-11-18T19:25:35,041 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,042 directory, all directories are treated like packages. 2025-11-18T19:25:35,043 ******************************************************************************** 2025-11-18T19:25:35,044 !! 2025-11-18T19:25:35,044 check.warn(importable) 2025-11-18T19:25:35,045 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.intermine' is absent from the `packages` configuration. 2025-11-18T19:25:35,045 !! 2025-11-18T19:25:35,046 ******************************************************************************** 2025-11-18T19:25:35,047 ############################ 2025-11-18T19:25:35,047 # Package would be ignored # 2025-11-18T19:25:35,048 ############################ 2025-11-18T19:25:35,048 Python recognizes 'galaxy.datatypes.display_applications.configs.intermine' as an importable package[^1], 2025-11-18T19:25:35,049 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,050 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,051 package, please make sure that 'galaxy.datatypes.display_applications.configs.intermine' is explicitly added 2025-11-18T19:25:35,051 to the `packages` configuration field. 2025-11-18T19:25:35,052 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,052 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,053 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,054 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,055 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,055 If you don't want 'galaxy.datatypes.display_applications.configs.intermine' to be distributed and are 2025-11-18T19:25:35,056 already explicitly excluding 'galaxy.datatypes.display_applications.configs.intermine' via 2025-11-18T19:25:35,056 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,057 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,057 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,058 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,061 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,061 even if it does not contain any `.py` files. 2025-11-18T19:25:35,062 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,063 directory, all directories are treated like packages. 2025-11-18T19:25:35,063 ******************************************************************************** 2025-11-18T19:25:35,064 !! 2025-11-18T19:25:35,065 check.warn(importable) 2025-11-18T19:25:35,065 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.iobio' is absent from the `packages` configuration. 2025-11-18T19:25:35,066 !! 2025-11-18T19:25:35,067 ******************************************************************************** 2025-11-18T19:25:35,067 ############################ 2025-11-18T19:25:35,068 # Package would be ignored # 2025-11-18T19:25:35,068 ############################ 2025-11-18T19:25:35,069 Python recognizes 'galaxy.datatypes.display_applications.configs.iobio' as an importable package[^1], 2025-11-18T19:25:35,069 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,071 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,071 package, please make sure that 'galaxy.datatypes.display_applications.configs.iobio' is explicitly added 2025-11-18T19:25:35,072 to the `packages` configuration field. 2025-11-18T19:25:35,073 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,073 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,074 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,075 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,076 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,077 If you don't want 'galaxy.datatypes.display_applications.configs.iobio' to be distributed and are 2025-11-18T19:25:35,078 already explicitly excluding 'galaxy.datatypes.display_applications.configs.iobio' via 2025-11-18T19:25:35,078 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,079 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,079 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,080 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,081 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,082 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,082 even if it does not contain any `.py` files. 2025-11-18T19:25:35,083 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,083 directory, all directories are treated like packages. 2025-11-18T19:25:35,084 ******************************************************************************** 2025-11-18T19:25:35,084 !! 2025-11-18T19:25:35,085 check.warn(importable) 2025-11-18T19:25:35,085 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.minerva' is absent from the `packages` configuration. 2025-11-18T19:25:35,086 !! 2025-11-18T19:25:35,087 ******************************************************************************** 2025-11-18T19:25:35,087 ############################ 2025-11-18T19:25:35,088 # Package would be ignored # 2025-11-18T19:25:35,088 ############################ 2025-11-18T19:25:35,089 Python recognizes 'galaxy.datatypes.display_applications.configs.minerva' as an importable package[^1], 2025-11-18T19:25:35,089 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,090 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,090 package, please make sure that 'galaxy.datatypes.display_applications.configs.minerva' is explicitly added 2025-11-18T19:25:35,091 to the `packages` configuration field. 2025-11-18T19:25:35,092 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,093 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,094 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,095 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,096 If you don't want 'galaxy.datatypes.display_applications.configs.minerva' to be distributed and are 2025-11-18T19:25:35,096 already explicitly excluding 'galaxy.datatypes.display_applications.configs.minerva' via 2025-11-18T19:25:35,097 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,098 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,099 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,100 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,102 even if it does not contain any `.py` files. 2025-11-18T19:25:35,102 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,103 directory, all directories are treated like packages. 2025-11-18T19:25:35,103 ******************************************************************************** 2025-11-18T19:25:35,105 !! 2025-11-18T19:25:35,105 check.warn(importable) 2025-11-18T19:25:35,106 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is absent from the `packages` configuration. 2025-11-18T19:25:35,106 !! 2025-11-18T19:25:35,107 ******************************************************************************** 2025-11-18T19:25:35,107 ############################ 2025-11-18T19:25:35,108 # Package would be ignored # 2025-11-18T19:25:35,108 ############################ 2025-11-18T19:25:35,109 Python recognizes 'galaxy.datatypes.display_applications.configs.qiime.qiime2' as an importable package[^1], 2025-11-18T19:25:35,109 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,110 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,110 package, please make sure that 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is explicitly added 2025-11-18T19:25:35,111 to the `packages` configuration field. 2025-11-18T19:25:35,111 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,112 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,112 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,113 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,114 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,115 If you don't want 'galaxy.datatypes.display_applications.configs.qiime.qiime2' to be distributed and are 2025-11-18T19:25:35,116 already explicitly excluding 'galaxy.datatypes.display_applications.configs.qiime.qiime2' via 2025-11-18T19:25:35,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,117 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,118 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,119 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,121 even if it does not contain any `.py` files. 2025-11-18T19:25:35,122 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,122 directory, all directories are treated like packages. 2025-11-18T19:25:35,123 ******************************************************************************** 2025-11-18T19:25:35,124 !! 2025-11-18T19:25:35,124 check.warn(importable) 2025-11-18T19:25:35,125 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.rviewer' is absent from the `packages` configuration. 2025-11-18T19:25:35,125 !! 2025-11-18T19:25:35,126 ******************************************************************************** 2025-11-18T19:25:35,127 ############################ 2025-11-18T19:25:35,127 # Package would be ignored # 2025-11-18T19:25:35,128 ############################ 2025-11-18T19:25:35,128 Python recognizes 'galaxy.datatypes.display_applications.configs.rviewer' as an importable package[^1], 2025-11-18T19:25:35,129 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,130 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,130 package, please make sure that 'galaxy.datatypes.display_applications.configs.rviewer' is explicitly added 2025-11-18T19:25:35,131 to the `packages` configuration field. 2025-11-18T19:25:35,132 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,133 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,133 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,134 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,135 If you don't want 'galaxy.datatypes.display_applications.configs.rviewer' to be distributed and are 2025-11-18T19:25:35,135 already explicitly excluding 'galaxy.datatypes.display_applications.configs.rviewer' via 2025-11-18T19:25:35,136 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,136 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,137 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,138 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,139 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,140 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,140 even if it does not contain any `.py` files. 2025-11-18T19:25:35,141 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,141 directory, all directories are treated like packages. 2025-11-18T19:25:35,142 ******************************************************************************** 2025-11-18T19:25:35,143 !! 2025-11-18T19:25:35,144 check.warn(importable) 2025-11-18T19:25:35,144 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.ucsc' is absent from the `packages` configuration. 2025-11-18T19:25:35,144 !! 2025-11-18T19:25:35,146 ******************************************************************************** 2025-11-18T19:25:35,146 ############################ 2025-11-18T19:25:35,147 # Package would be ignored # 2025-11-18T19:25:35,147 ############################ 2025-11-18T19:25:35,148 Python recognizes 'galaxy.datatypes.display_applications.configs.ucsc' as an importable package[^1], 2025-11-18T19:25:35,148 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,149 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,150 package, please make sure that 'galaxy.datatypes.display_applications.configs.ucsc' is explicitly added 2025-11-18T19:25:35,150 to the `packages` configuration field. 2025-11-18T19:25:35,151 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,152 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,153 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,154 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,155 If you don't want 'galaxy.datatypes.display_applications.configs.ucsc' to be distributed and are 2025-11-18T19:25:35,156 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ucsc' via 2025-11-18T19:25:35,156 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,157 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,157 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,158 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,159 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,160 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,161 even if it does not contain any `.py` files. 2025-11-18T19:25:35,161 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,161 directory, all directories are treated like packages. 2025-11-18T19:25:35,162 ******************************************************************************** 2025-11-18T19:25:35,163 !! 2025-11-18T19:25:35,163 check.warn(importable) 2025-11-18T19:25:35,163 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.xsd' is absent from the `packages` configuration. 2025-11-18T19:25:35,164 !! 2025-11-18T19:25:35,165 ******************************************************************************** 2025-11-18T19:25:35,165 ############################ 2025-11-18T19:25:35,166 # Package would be ignored # 2025-11-18T19:25:35,166 ############################ 2025-11-18T19:25:35,167 Python recognizes 'galaxy.datatypes.display_applications.xsd' as an importable package[^1], 2025-11-18T19:25:35,167 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,168 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,169 package, please make sure that 'galaxy.datatypes.display_applications.xsd' is explicitly added 2025-11-18T19:25:35,169 to the `packages` configuration field. 2025-11-18T19:25:35,170 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,171 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,172 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,173 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,174 If you don't want 'galaxy.datatypes.display_applications.xsd' to be distributed and are 2025-11-18T19:25:35,174 already explicitly excluding 'galaxy.datatypes.display_applications.xsd' via 2025-11-18T19:25:35,175 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,175 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,176 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,177 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,178 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,180 even if it does not contain any `.py` files. 2025-11-18T19:25:35,180 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,181 directory, all directories are treated like packages. 2025-11-18T19:25:35,182 ******************************************************************************** 2025-11-18T19:25:35,182 !! 2025-11-18T19:25:35,183 check.warn(importable) 2025-11-18T19:25:35,183 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic' is absent from the `packages` configuration. 2025-11-18T19:25:35,184 !! 2025-11-18T19:25:35,185 ******************************************************************************** 2025-11-18T19:25:35,186 ############################ 2025-11-18T19:25:35,186 # Package would be ignored # 2025-11-18T19:25:35,186 ############################ 2025-11-18T19:25:35,187 Python recognizes 'galaxy.model.migrations.alembic' as an importable package[^1], 2025-11-18T19:25:35,187 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,188 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,188 package, please make sure that 'galaxy.model.migrations.alembic' is explicitly added 2025-11-18T19:25:35,189 to the `packages` configuration field. 2025-11-18T19:25:35,190 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,190 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,190 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,192 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,192 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,193 If you don't want 'galaxy.model.migrations.alembic' to be distributed and are 2025-11-18T19:25:35,194 already explicitly excluding 'galaxy.model.migrations.alembic' via 2025-11-18T19:25:35,194 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,195 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,195 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,196 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,197 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,199 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,199 even if it does not contain any `.py` files. 2025-11-18T19:25:35,199 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,200 directory, all directories are treated like packages. 2025-11-18T19:25:35,200 ******************************************************************************** 2025-11-18T19:25:35,201 !! 2025-11-18T19:25:35,202 check.warn(importable) 2025-11-18T19:25:35,202 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic.versions_gxy' is absent from the `packages` configuration. 2025-11-18T19:25:35,203 !! 2025-11-18T19:25:35,204 ******************************************************************************** 2025-11-18T19:25:35,204 ############################ 2025-11-18T19:25:35,205 # Package would be ignored # 2025-11-18T19:25:35,205 ############################ 2025-11-18T19:25:35,206 Python recognizes 'galaxy.model.migrations.alembic.versions_gxy' as an importable package[^1], 2025-11-18T19:25:35,206 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,207 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,208 package, please make sure that 'galaxy.model.migrations.alembic.versions_gxy' is explicitly added 2025-11-18T19:25:35,209 to the `packages` configuration field. 2025-11-18T19:25:35,210 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,210 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,211 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,212 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,212 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,213 If you don't want 'galaxy.model.migrations.alembic.versions_gxy' to be distributed and are 2025-11-18T19:25:35,214 already explicitly excluding 'galaxy.model.migrations.alembic.versions_gxy' via 2025-11-18T19:25:35,214 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,214 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,215 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,216 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,217 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,218 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,218 even if it does not contain any `.py` files. 2025-11-18T19:25:35,219 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,219 directory, all directories are treated like packages. 2025-11-18T19:25:35,219 ******************************************************************************** 2025-11-18T19:25:35,220 !! 2025-11-18T19:25:35,221 check.warn(importable) 2025-11-18T19:25:35,221 /tmp/pip-build-env-12y4j71z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic.versions_tsi' is absent from the `packages` configuration. 2025-11-18T19:25:35,222 !! 2025-11-18T19:25:35,223 ******************************************************************************** 2025-11-18T19:25:35,223 ############################ 2025-11-18T19:25:35,224 # Package would be ignored # 2025-11-18T19:25:35,224 ############################ 2025-11-18T19:25:35,225 Python recognizes 'galaxy.model.migrations.alembic.versions_tsi' as an importable package[^1], 2025-11-18T19:25:35,225 but it is absent from setuptools' `packages` configuration. 2025-11-18T19:25:35,226 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-18T19:25:35,227 package, please make sure that 'galaxy.model.migrations.alembic.versions_tsi' is explicitly added 2025-11-18T19:25:35,227 to the `packages` configuration field. 2025-11-18T19:25:35,228 Alternatively, you can also rely on setuptools' discovery methods 2025-11-18T19:25:35,229 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-18T19:25:35,229 instead of `find_packages(...)`/`find:`). 2025-11-18T19:25:35,230 You can read more about "package discovery" on setuptools documentation page: 2025-11-18T19:25:35,231 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-18T19:25:35,232 If you don't want 'galaxy.model.migrations.alembic.versions_tsi' to be distributed and are 2025-11-18T19:25:35,233 already explicitly excluding 'galaxy.model.migrations.alembic.versions_tsi' via 2025-11-18T19:25:35,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-18T19:25:35,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-18T19:25:35,234 combination with a more fine grained `package-data` configuration. 2025-11-18T19:25:35,235 You can read more about "package data files" on setuptools documentation page: 2025-11-18T19:25:35,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-18T19:25:35,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-18T19:25:35,238 even if it does not contain any `.py` files. 2025-11-18T19:25:35,239 On the other hand, currently there is no concept of package data 2025-11-18T19:25:35,239 directory, all directories are treated like packages. 2025-11-18T19:25:35,240 ******************************************************************************** 2025-11-18T19:25:35,240 !! 2025-11-18T19:25:35,241 check.warn(importable) 2025-11-18T19:25:35,241 copying galaxy/py.typed -> build/lib/galaxy 2025-11-18T19:25:35,242 copying galaxy/datatypes/set_metadata_tool.xml -> build/lib/galaxy/datatypes 2025-11-18T19:25:35,242 copying galaxy/datatypes/converters/archive_to_directory.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,243 copying galaxy/datatypes/converters/bam_to_bai.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,243 copying galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,243 copying galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,244 copying galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,244 copying galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,245 copying galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,245 copying galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,246 copying galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,246 copying galaxy/datatypes/converters/bigbed_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,247 copying galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,247 copying galaxy/datatypes/converters/biom.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,248 copying galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,248 copying galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,249 copying galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,249 copying galaxy/datatypes/converters/csv_to_tabular.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,250 copying galaxy/datatypes/converters/fasta_to_2bit.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,250 copying galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,251 copying galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,251 copying galaxy/datatypes/converters/fasta_to_fai.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,252 copying galaxy/datatypes/converters/fasta_to_len.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,252 copying galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,253 copying galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,253 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,254 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,254 copying galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,255 copying galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,255 copying galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,256 copying galaxy/datatypes/converters/gro_to_pdb.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,256 copying galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,256 copying galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,257 copying galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,257 copying galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,258 copying galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,258 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,259 copying galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,259 copying galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,259 copying galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,260 copying galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,260 copying galaxy/datatypes/converters/len_to_linecount.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,261 copying galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,261 copying galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,262 copying galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,262 copying galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,263 copying galaxy/datatypes/converters/mdconvert.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,263 copying galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,264 copying galaxy/datatypes/converters/molecules_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,264 copying galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,265 copying galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,265 copying galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,266 copying galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,266 copying galaxy/datatypes/converters/pdb_to_gro.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,267 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,267 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,268 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,268 copying galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,268 copying galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,269 copying galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,270 copying galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,270 copying galaxy/datatypes/converters/tabular_to_csv.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,271 copying galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,271 copying galaxy/datatypes/converters/tar_to_directory.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,272 copying galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,272 copying galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,273 copying galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,273 copying galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,273 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,274 copying galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,274 copying galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,275 copying galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/lib/galaxy/datatypes/converters 2025-11-18T19:25:35,275 creating build/lib/galaxy/datatypes/display_applications/configs/biom 2025-11-18T19:25:35,276 copying galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/biom 2025-11-18T19:25:35,276 creating build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,277 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,277 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,278 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,278 creating build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,279 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,279 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,280 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,280 creating build/lib/galaxy/datatypes/display_applications/configs/icn3d 2025-11-18T19:25:35,281 copying galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/icn3d 2025-11-18T19:25:35,281 creating build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,282 copying galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,282 copying galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,283 copying galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,283 copying galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,284 copying galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,284 copying galaxy/datatypes/display_applications/configs/igb/cram.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,285 copying galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,285 copying galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,285 creating build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,286 copying galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,286 copying galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,287 copying galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,287 copying galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,288 copying galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,288 copying galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,289 copying galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,289 creating build/lib/galaxy/datatypes/display_applications/configs/image 2025-11-18T19:25:35,289 copying galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/lib/galaxy/datatypes/display_applications/configs/image 2025-11-18T19:25:35,290 creating build/lib/galaxy/datatypes/display_applications/configs/intermine 2025-11-18T19:25:35,290 copying galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/intermine 2025-11-18T19:25:35,291 creating build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-11-18T19:25:35,291 copying galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-11-18T19:25:35,292 copying galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-11-18T19:25:35,292 creating build/lib/galaxy/datatypes/display_applications/configs/minerva 2025-11-18T19:25:35,293 copying galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/lib/galaxy/datatypes/display_applications/configs/minerva 2025-11-18T19:25:35,293 creating build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-11-18T19:25:35,294 copying galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-11-18T19:25:35,294 creating build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-11-18T19:25:35,295 copying galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-11-18T19:25:35,295 copying galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-11-18T19:25:35,296 creating build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,296 copying galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,297 copying galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,297 copying galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,298 copying galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,298 copying galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,299 copying galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,299 copying galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,300 creating build/lib/galaxy/datatypes/display_applications/xsd 2025-11-18T19:25:35,300 copying galaxy/datatypes/display_applications/xsd/geda.xsd -> build/lib/galaxy/datatypes/display_applications/xsd 2025-11-18T19:25:35,300 copying galaxy/model/migrations/README.md -> build/lib/galaxy/model/migrations 2025-11-18T19:25:35,301 copying galaxy/model/migrations/alembic.ini -> build/lib/galaxy/model/migrations 2025-11-18T19:25:35,301 creating build/lib/galaxy/model/migrations/alembic 2025-11-18T19:25:35,302 copying galaxy/model/migrations/alembic/env.py -> build/lib/galaxy/model/migrations/alembic 2025-11-18T19:25:35,302 copying galaxy/model/migrations/alembic/script.py.mako -> build/lib/galaxy/model/migrations/alembic 2025-11-18T19:25:35,303 creating build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,303 copying galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,304 copying galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,304 copying galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,305 copying galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,305 copying galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,306 copying galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,306 copying galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,307 copying galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,307 copying galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,308 copying galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,308 copying galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,309 copying galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,309 copying galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,310 copying galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,311 copying galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,311 copying galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,311 copying galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,313 copying galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,315 copying galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,318 copying galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,320 copying galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,322 copying galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,324 copying galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,326 copying galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,328 copying galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,330 copying galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,333 copying galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,335 copying galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,338 copying galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,340 copying galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,342 copying galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,344 copying galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,346 copying galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,349 copying galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,351 copying galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,354 copying galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,356 copying galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,358 copying galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,360 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,362 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,365 copying galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,367 copying galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,369 copying galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,372 copying galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,374 copying galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,376 copying galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,378 copying galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,381 copying galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,383 copying galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,385 copying galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,388 copying galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,390 copying galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,392 copying galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,395 copying galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,397 copying galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,399 copying galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,402 copying galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,404 copying galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:35,407 creating build/lib/galaxy/model/migrations/alembic/versions_tsi 2025-11-18T19:25:35,408 copying galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_tsi 2025-11-18T19:25:35,436 installing to build/bdist.linux-armv7l/wheel 2025-11-18T19:25:35,437 running install 2025-11-18T19:25:35,459 running install_lib 2025-11-18T19:25:35,468 creating build/bdist.linux-armv7l/wheel 2025-11-18T19:25:35,470 creating build/bdist.linux-armv7l/wheel/galaxy 2025-11-18T19:25:35,473 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes 2025-11-18T19:25:35,474 copying build/lib/galaxy/datatypes/coverage.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,476 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2025-11-18T19:25:35,477 copying build/lib/galaxy/datatypes/dataproviders/decorators.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,480 copying build/lib/galaxy/datatypes/dataproviders/chunk.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,482 copying build/lib/galaxy/datatypes/dataproviders/dataset.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,484 copying build/lib/galaxy/datatypes/dataproviders/column.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,487 copying build/lib/galaxy/datatypes/dataproviders/exceptions.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,489 copying build/lib/galaxy/datatypes/dataproviders/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,491 copying build/lib/galaxy/datatypes/dataproviders/hierarchy.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,493 copying build/lib/galaxy/datatypes/dataproviders/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,495 copying build/lib/galaxy/datatypes/dataproviders/line.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,497 copying build/lib/galaxy/datatypes/dataproviders/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-11-18T19:25:35,500 copying build/lib/galaxy/datatypes/constructive_solid_geometry.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,503 copying build/lib/galaxy/datatypes/isa.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,505 copying build/lib/galaxy/datatypes/hdf5.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,507 copying build/lib/galaxy/datatypes/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,510 copying build/lib/galaxy/datatypes/annotation.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,512 copying build/lib/galaxy/datatypes/graph.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,514 copying build/lib/galaxy/datatypes/ngsindex.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,517 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2025-11-18T19:25:35,518 copying build/lib/galaxy/datatypes/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-11-18T19:25:35,520 copying build/lib/galaxy/datatypes/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-11-18T19:25:35,523 copying build/lib/galaxy/datatypes/util/generic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-11-18T19:25:35,525 copying build/lib/galaxy/datatypes/util/gff_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-11-18T19:25:35,527 copying build/lib/galaxy/datatypes/checkers.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,529 copying build/lib/galaxy/datatypes/gis.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,531 copying build/lib/galaxy/datatypes/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,533 copying build/lib/galaxy/datatypes/chrominfo.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,535 copying build/lib/galaxy/datatypes/phylip.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,537 copying build/lib/galaxy/datatypes/blast.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,540 copying build/lib/galaxy/datatypes/triples.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,542 copying build/lib/galaxy/datatypes/metacyto.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,544 copying build/lib/galaxy/datatypes/tabular.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,549 copying build/lib/galaxy/datatypes/larch.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,551 copying build/lib/galaxy/datatypes/data.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,555 copying build/lib/galaxy/datatypes/proteomics.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,558 copying build/lib/galaxy/datatypes/media.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,561 copying build/lib/galaxy/datatypes/qiime2.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,563 copying build/lib/galaxy/datatypes/tracks.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,568 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2025-11-18T19:25:35,569 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,571 copying build/lib/galaxy/datatypes/converters/interval_to_fli.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,573 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,574 copying build/lib/galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,576 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,578 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,580 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,582 copying build/lib/galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,584 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,586 copying build/lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,587 copying build/lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,589 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,591 copying build/lib/galaxy/datatypes/converters/tar_to_directory.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,593 copying build/lib/galaxy/datatypes/converters/len_to_linecount.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,595 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,597 copying build/lib/galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,599 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,600 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,602 copying build/lib/galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,604 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,606 copying build/lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,607 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,609 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,611 copying build/lib/galaxy/datatypes/converters/fasta_to_len.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,613 copying build/lib/galaxy/datatypes/converters/molecules_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,615 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,618 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,620 copying build/lib/galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,622 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,623 copying build/lib/galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,625 copying build/lib/galaxy/datatypes/converters/csv_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,627 copying build/lib/galaxy/datatypes/converters/biom.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,629 copying build/lib/galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,631 copying build/lib/galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,634 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,635 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,637 copying build/lib/galaxy/datatypes/converters/pdb_to_gro.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,639 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,641 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,643 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,645 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,647 copying build/lib/galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,648 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,650 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,652 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,654 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,656 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,658 copying build/lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,659 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,661 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,663 copying build/lib/galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,665 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,667 copying build/lib/galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,668 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,670 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,672 copying build/lib/galaxy/datatypes/converters/bam_to_bai.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,674 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,676 copying build/lib/galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,678 copying build/lib/galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,680 copying build/lib/galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,681 copying build/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,683 copying build/lib/galaxy/datatypes/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,685 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,687 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,689 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,690 copying build/lib/galaxy/datatypes/converters/fasta_to_fai.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,692 copying build/lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,694 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,696 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,697 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,699 copying build/lib/galaxy/datatypes/converters/fasta_to_2bit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,701 copying build/lib/galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,703 copying build/lib/galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,705 copying build/lib/galaxy/datatypes/converters/mdconvert.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,707 copying build/lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,708 copying build/lib/galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,710 copying build/lib/galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,712 copying build/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,714 copying build/lib/galaxy/datatypes/converters/bigbed_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,716 copying build/lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,718 copying build/lib/galaxy/datatypes/converters/tabular_to_csv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,720 copying build/lib/galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,722 copying build/lib/galaxy/datatypes/converters/gro_to_pdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,724 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,726 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,728 copying build/lib/galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,730 copying build/lib/galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,732 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,734 copying build/lib/galaxy/datatypes/converters/archive_to_directory.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,736 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,738 copying build/lib/galaxy/datatypes/converters/tabular_csv.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,740 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,742 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,743 copying build/lib/galaxy/datatypes/converters/fasta_to_len.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,745 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,747 copying build/lib/galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-11-18T19:25:35,749 copying build/lib/galaxy/datatypes/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,751 copying build/lib/galaxy/datatypes/anvio.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,753 copying build/lib/galaxy/datatypes/speech.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,756 copying build/lib/galaxy/datatypes/plant_tribes.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,758 copying build/lib/galaxy/datatypes/flow.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,760 copying build/lib/galaxy/datatypes/interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,765 copying build/lib/galaxy/datatypes/molecules.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,768 copying build/lib/galaxy/datatypes/assembly.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,770 copying build/lib/galaxy/datatypes/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,772 copying build/lib/galaxy/datatypes/chain.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,775 copying build/lib/galaxy/datatypes/set_metadata_tool.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,777 copying build/lib/galaxy/datatypes/images.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,780 copying build/lib/galaxy/datatypes/goldenpath.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,782 copying build/lib/galaxy/datatypes/sequence.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,787 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2025-11-18T19:25:35,788 copying build/lib/galaxy/datatypes/display_applications/application.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-11-18T19:25:35,791 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs 2025-11-18T19:25:35,793 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/intermine 2025-11-18T19:25:35,794 copying build/lib/galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/intermine 2025-11-18T19:25:35,796 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/minerva 2025-11-18T19:25:35,798 copying build/lib/galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/minerva 2025-11-18T19:25:35,800 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,802 copying build/lib/galaxy/datatypes/display_applications/configs/igb/cram.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,804 copying build/lib/galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,806 copying build/lib/galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,808 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,809 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,811 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,813 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,815 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-11-18T19:25:35,817 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/image 2025-11-18T19:25:35,818 copying build/lib/galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/image 2025-11-18T19:25:35,821 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime 2025-11-18T19:25:35,823 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-11-18T19:25:35,824 copying build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-11-18T19:25:35,826 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,827 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,830 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,832 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-11-18T19:25:35,834 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2025-11-18T19:25:35,835 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/iobio 2025-11-18T19:25:35,837 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/iobio 2025-11-18T19:25:35,840 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/biom 2025-11-18T19:25:35,841 copying build/lib/galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/biom 2025-11-18T19:25:35,843 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,844 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,846 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,848 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-11-18T19:25:35,851 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,852 copying build/lib/galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,854 copying build/lib/galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,857 copying build/lib/galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,859 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,861 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,863 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,866 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-11-18T19:25:35,869 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/icn3d 2025-11-18T19:25:35,870 copying build/lib/galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/icn3d 2025-11-18T19:25:35,872 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,873 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,876 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,878 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,880 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,882 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,884 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,886 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-11-18T19:25:35,888 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2025-11-18T19:25:35,889 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/rviewer 2025-11-18T19:25:35,891 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/rviewer 2025-11-18T19:25:35,894 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/xsd 2025-11-18T19:25:35,895 copying build/lib/galaxy/datatypes/display_applications/xsd/geda.xsd -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/xsd 2025-11-18T19:25:35,898 copying build/lib/galaxy/datatypes/display_applications/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-11-18T19:25:35,900 copying build/lib/galaxy/datatypes/display_applications/parameters.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-11-18T19:25:35,902 copying build/lib/galaxy/datatypes/display_applications/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-11-18T19:25:35,904 copying build/lib/galaxy/datatypes/neo4j.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,906 copying build/lib/galaxy/datatypes/text.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,910 copying build/lib/galaxy/datatypes/spaln.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,912 copying build/lib/galaxy/datatypes/upload_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,914 copying build/lib/galaxy/datatypes/qualityscore.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,916 copying build/lib/galaxy/datatypes/microarrays.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,919 copying build/lib/galaxy/datatypes/msa.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,921 copying build/lib/galaxy/datatypes/protocols.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,923 copying build/lib/galaxy/datatypes/sniff.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,926 copying build/lib/galaxy/datatypes/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,928 copying build/lib/galaxy/datatypes/mothur.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,931 copying build/lib/galaxy/datatypes/binary.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,938 copying build/lib/galaxy/datatypes/genetics.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-11-18T19:25:35,941 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2025-11-18T19:25:35,943 creating build/bdist.linux-armv7l/wheel/galaxy/security 2025-11-18T19:25:35,945 copying build/lib/galaxy/security/ssh_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-11-18T19:25:35,947 copying build/lib/galaxy/security/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-11-18T19:25:35,949 copying build/lib/galaxy/security/object_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-11-18T19:25:35,952 copying build/lib/galaxy/security/validate_user_input.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-11-18T19:25:35,955 copying build/lib/galaxy/security/idencoding.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-11-18T19:25:35,957 copying build/lib/galaxy/security/passwords.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-11-18T19:25:35,959 copying build/lib/galaxy/security/vault.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-11-18T19:25:35,963 creating build/bdist.linux-armv7l/wheel/galaxy/quota 2025-11-18T19:25:35,964 copying build/lib/galaxy/quota/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/quota 2025-11-18T19:25:35,967 copying build/lib/galaxy/quota/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/quota 2025-11-18T19:25:35,969 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-11-18T19:25:35,972 creating build/bdist.linux-armv7l/wheel/galaxy/model 2025-11-18T19:25:35,974 creating build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2025-11-18T19:25:35,975 copying build/lib/galaxy/model/unittest_utils/store_fixtures.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,978 copying build/lib/galaxy/model/unittest_utils/db_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,980 copying build/lib/galaxy/model/unittest_utils/beaker_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,981 copying build/lib/galaxy/model/unittest_utils/data_app.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,983 copying build/lib/galaxy/model/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,985 copying build/lib/galaxy/model/unittest_utils/utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,987 copying build/lib/galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,989 copying build/lib/galaxy/model/unittest_utils/model_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-11-18T19:25:35,992 copying build/lib/galaxy/model/database_heartbeat.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:35,994 copying build/lib/galaxy/model/item_attrs.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:35,996 copying build/lib/galaxy/model/custom_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,000 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2025-11-18T19:25:36,001 copying build/lib/galaxy/model/migrations/alembic.ini -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,004 copying build/lib/galaxy/model/migrations/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,006 copying build/lib/galaxy/model/migrations/exceptions.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,008 copying build/lib/galaxy/model/migrations/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,011 copying build/lib/galaxy/model/migrations/dbscript.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,013 copying build/lib/galaxy/model/migrations/scripts.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,016 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/data_fixes 2025-11-18T19:25:36,017 copying build/lib/galaxy/model/migrations/data_fixes/user_table_fixer.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-11-18T19:25:36,020 copying build/lib/galaxy/model/migrations/data_fixes/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-11-18T19:25:36,021 copying build/lib/galaxy/model/migrations/data_fixes/association_table_fixer.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-11-18T19:25:36,024 copying build/lib/galaxy/model/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,026 copying build/lib/galaxy/model/migrations/README.md -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-11-18T19:25:36,029 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2025-11-18T19:25:36,030 copying build/lib/galaxy/model/migrations/alembic/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic 2025-11-18T19:25:36,034 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,035 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,037 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,039 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,041 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,042 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,044 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,046 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,048 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,050 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,052 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,054 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,056 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,058 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,060 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,062 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,064 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,065 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,067 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,069 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,072 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,074 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,075 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,077 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,079 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,080 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,082 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,084 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,086 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,088 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,090 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,092 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,094 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,095 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,097 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,099 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,101 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,103 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,105 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,107 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,110 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,112 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,114 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,116 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,118 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,119 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,121 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,123 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,125 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,127 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,128 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,130 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,132 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,134 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,135 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,137 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,139 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,141 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,143 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-11-18T19:25:36,146 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_tsi 2025-11-18T19:25:36,147 copying build/lib/galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_tsi 2025-11-18T19:25:36,149 copying build/lib/galaxy/model/migrations/alembic/script.py.mako -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic 2025-11-18T19:25:36,150 copying build/lib/galaxy/model/scoped_session.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,152 copying build/lib/galaxy/model/database_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,155 copying build/lib/galaxy/model/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,158 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2025-11-18T19:25:36,159 copying build/lib/galaxy/model/dataset_collections/builder.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,162 copying build/lib/galaxy/model/dataset_collections/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,164 copying build/lib/galaxy/model/dataset_collections/matching.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,166 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2025-11-18T19:25:36,167 copying build/lib/galaxy/model/dataset_collections/types/record.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-11-18T19:25:36,169 copying build/lib/galaxy/model/dataset_collections/types/semantics.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-11-18T19:25:36,171 copying build/lib/galaxy/model/dataset_collections/types/list.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-11-18T19:25:36,173 copying build/lib/galaxy/model/dataset_collections/types/paired_or_unpaired.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-11-18T19:25:36,175 copying build/lib/galaxy/model/dataset_collections/types/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-11-18T19:25:36,177 copying build/lib/galaxy/model/dataset_collections/types/paired.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-11-18T19:25:36,178 copying build/lib/galaxy/model/dataset_collections/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,180 copying build/lib/galaxy/model/dataset_collections/type_description.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,182 copying build/lib/galaxy/model/dataset_collections/structure.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,184 copying build/lib/galaxy/model/dataset_collections/adapters.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,187 copying build/lib/galaxy/model/dataset_collections/query.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,189 copying build/lib/galaxy/model/dataset_collections/subcollections.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-11-18T19:25:36,191 copying build/lib/galaxy/model/index_filter_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,193 copying build/lib/galaxy/model/mapping.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,195 copying build/lib/galaxy/model/deferred.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,198 creating build/bdist.linux-armv7l/wheel/galaxy/model/scripts 2025-11-18T19:25:36,199 copying build/lib/galaxy/model/scripts/history_table_pruner.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-11-18T19:25:36,201 copying build/lib/galaxy/model/scripts/delete_job_metrics.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-11-18T19:25:36,203 copying build/lib/galaxy/model/scripts/prune_history_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-11-18T19:25:36,205 copying build/lib/galaxy/model/scripts/delete_galaxy_sessions.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-11-18T19:25:36,207 copying build/lib/galaxy/model/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-11-18T19:25:36,208 copying build/lib/galaxy/model/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,222 creating build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2025-11-18T19:25:36,223 copying build/lib/galaxy/model/tool_shed_install/mapping.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/tool_shed_install 2025-11-18T19:25:36,226 copying build/lib/galaxy/model/tool_shed_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/tool_shed_install 2025-11-18T19:25:36,229 creating build/bdist.linux-armv7l/wheel/galaxy/model/orm 2025-11-18T19:25:36,230 copying build/lib/galaxy/model/orm/now.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-11-18T19:25:36,232 copying build/lib/galaxy/model/orm/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-11-18T19:25:36,235 copying build/lib/galaxy/model/orm/engine_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-11-18T19:25:36,237 copying build/lib/galaxy/model/orm/scripts.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-11-18T19:25:36,240 copying build/lib/galaxy/model/orm/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-11-18T19:25:36,242 copying build/lib/galaxy/model/dereference.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,244 copying build/lib/galaxy/model/database_object_names.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,247 creating build/bdist.linux-armv7l/wheel/galaxy/model/store 2025-11-18T19:25:36,249 copying build/lib/galaxy/model/store/ro_crate_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-11-18T19:25:36,252 copying build/lib/galaxy/model/store/build_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-11-18T19:25:36,255 copying build/lib/galaxy/model/store/load_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-11-18T19:25:36,257 copying build/lib/galaxy/model/store/discover.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-11-18T19:25:36,263 copying build/lib/galaxy/model/store/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-11-18T19:25:36,304 copying build/lib/galaxy/model/store/_bco_convert_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-11-18T19:25:36,306 copying build/lib/galaxy/model/security.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,312 creating build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2025-11-18T19:25:36,313 copying build/lib/galaxy/model/triggers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/triggers 2025-11-18T19:25:36,315 copying build/lib/galaxy/model/triggers/update_audit_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/triggers 2025-11-18T19:25:36,318 copying build/lib/galaxy/model/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,321 copying build/lib/galaxy/model/none_like.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,323 copying build/lib/galaxy/model/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-11-18T19:25:36,327 creating build/bdist.linux-armv7l/wheel/galaxy/model/db 2025-11-18T19:25:36,328 copying build/lib/galaxy/model/db/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-11-18T19:25:36,331 copying build/lib/galaxy/model/db/role.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-11-18T19:25:36,333 copying build/lib/galaxy/model/db/user.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-11-18T19:25:36,335 copying build/lib/galaxy/model/db/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-11-18T19:25:36,337 running install_egg_info 2025-11-18T19:25:36,351 Copying galaxy_data.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_data-25.0.4-py3.11.egg-info 2025-11-18T19:25:36,366 running install_scripts 2025-11-18T19:25:36,381 creating build/bdist.linux-armv7l/wheel/galaxy_data-25.0.4.dist-info/WHEEL 2025-11-18T19:25:36,383 creating '/tmp/pip-wheel-q9dffon_/.tmp-22eav57p/galaxy_data-25.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-18T19:25:36,386 adding 'galaxy/__init__.py' 2025-11-18T19:25:36,387 adding 'galaxy/py.typed' 2025-11-18T19:25:36,389 adding 'galaxy/datatypes/__init__.py' 2025-11-18T19:25:36,391 adding 'galaxy/datatypes/_schema.py' 2025-11-18T19:25:36,392 adding 'galaxy/datatypes/annotation.py' 2025-11-18T19:25:36,394 adding 'galaxy/datatypes/anvio.py' 2025-11-18T19:25:36,396 adding 'galaxy/datatypes/assembly.py' 2025-11-18T19:25:36,412 adding 'galaxy/datatypes/binary.py' 2025-11-18T19:25:36,416 adding 'galaxy/datatypes/blast.py' 2025-11-18T19:25:36,417 adding 'galaxy/datatypes/chain.py' 2025-11-18T19:25:36,418 adding 'galaxy/datatypes/checkers.py' 2025-11-18T19:25:36,420 adding 'galaxy/datatypes/chrominfo.py' 2025-11-18T19:25:36,424 adding 'galaxy/datatypes/constructive_solid_geometry.py' 2025-11-18T19:25:36,425 adding 'galaxy/datatypes/coverage.py' 2025-11-18T19:25:36,433 adding 'galaxy/datatypes/data.py' 2025-11-18T19:25:36,435 adding 'galaxy/datatypes/flow.py' 2025-11-18T19:25:36,439 adding 'galaxy/datatypes/genetics.py' 2025-11-18T19:25:36,441 adding 'galaxy/datatypes/gis.py' 2025-11-18T19:25:36,444 adding 'galaxy/datatypes/goldenpath.py' 2025-11-18T19:25:36,445 adding 'galaxy/datatypes/graph.py' 2025-11-18T19:25:36,446 adding 'galaxy/datatypes/hdf5.py' 2025-11-18T19:25:36,450 adding 'galaxy/datatypes/images.py' 2025-11-18T19:25:36,457 adding 'galaxy/datatypes/interval.py' 2025-11-18T19:25:36,459 adding 'galaxy/datatypes/isa.py' 2025-11-18T19:25:36,461 adding 'galaxy/datatypes/larch.py' 2025-11-18T19:25:36,463 adding 'galaxy/datatypes/media.py' 2025-11-18T19:25:36,464 adding 'galaxy/datatypes/metacyto.py' 2025-11-18T19:25:36,465 adding 'galaxy/datatypes/metadata.py' 2025-11-18T19:25:36,467 adding 'galaxy/datatypes/microarrays.py' 2025-11-18T19:25:36,472 adding 'galaxy/datatypes/molecules.py' 2025-11-18T19:25:36,475 adding 'galaxy/datatypes/mothur.py' 2025-11-18T19:25:36,477 adding 'galaxy/datatypes/msa.py' 2025-11-18T19:25:36,479 adding 'galaxy/datatypes/neo4j.py' 2025-11-18T19:25:36,480 adding 'galaxy/datatypes/ngsindex.py' 2025-11-18T19:25:36,482 adding 'galaxy/datatypes/phylip.py' 2025-11-18T19:25:36,483 adding 'galaxy/datatypes/plant_tribes.py' 2025-11-18T19:25:36,487 adding 'galaxy/datatypes/proteomics.py' 2025-11-18T19:25:36,488 adding 'galaxy/datatypes/protocols.py' 2025-11-18T19:25:36,490 adding 'galaxy/datatypes/qiime2.py' 2025-11-18T19:25:36,491 adding 'galaxy/datatypes/qualityscore.py' 2025-11-18T19:25:36,497 adding 'galaxy/datatypes/registry.py' 2025-11-18T19:25:36,504 adding 'galaxy/datatypes/sequence.py' 2025-11-18T19:25:36,505 adding 'galaxy/datatypes/set_metadata_tool.xml' 2025-11-18T19:25:36,509 adding 'galaxy/datatypes/sniff.py' 2025-11-18T19:25:36,511 adding 'galaxy/datatypes/spaln.py' 2025-11-18T19:25:36,513 adding 'galaxy/datatypes/speech.py' 2025-11-18T19:25:36,521 adding 'galaxy/datatypes/tabular.py' 2025-11-18T19:25:36,527 adding 'galaxy/datatypes/text.py' 2025-11-18T19:25:36,528 adding 'galaxy/datatypes/tracks.py' 2025-11-18T19:25:36,530 adding 'galaxy/datatypes/triples.py' 2025-11-18T19:25:36,531 adding 'galaxy/datatypes/upload_util.py' 2025-11-18T19:25:36,533 adding 'galaxy/datatypes/xml.py' 2025-11-18T19:25:36,536 adding 'galaxy/datatypes/converters/__init__.py' 2025-11-18T19:25:36,537 adding 'galaxy/datatypes/converters/archive_to_directory.xml' 2025-11-18T19:25:36,538 adding 'galaxy/datatypes/converters/bam_to_bai.xml' 2025-11-18T19:25:36,539 adding 'galaxy/datatypes/converters/bam_to_bigwig_converter.xml' 2025-11-18T19:25:36,540 adding 'galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml' 2025-11-18T19:25:36,542 adding 'galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml' 2025-11-18T19:25:36,543 adding 'galaxy/datatypes/converters/bed_to_fli_converter.xml' 2025-11-18T19:25:36,544 adding 'galaxy/datatypes/converters/bed_to_gff_converter.py' 2025-11-18T19:25:36,545 adding 'galaxy/datatypes/converters/bed_to_gff_converter.xml' 2025-11-18T19:25:36,547 adding 'galaxy/datatypes/converters/bed_to_interval_index_converter.xml' 2025-11-18T19:25:36,548 adding 'galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml' 2025-11-18T19:25:36,549 adding 'galaxy/datatypes/converters/bigbed_to_bed_converter.xml' 2025-11-18T19:25:36,551 adding 'galaxy/datatypes/converters/bigwig_to_wig_converter.xml' 2025-11-18T19:25:36,552 adding 'galaxy/datatypes/converters/biom.xml' 2025-11-18T19:25:36,553 adding 'galaxy/datatypes/converters/bz2_to_uncompressed.xml' 2025-11-18T19:25:36,554 adding 'galaxy/datatypes/converters/cml_to_smi_converter.xml' 2025-11-18T19:25:36,556 adding 'galaxy/datatypes/converters/cram_to_bam_converter.xml' 2025-11-18T19:25:36,557 adding 'galaxy/datatypes/converters/csv_to_tabular.xml' 2025-11-18T19:25:36,558 adding 'galaxy/datatypes/converters/fasta_to_2bit.xml' 2025-11-18T19:25:36,559 adding 'galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml' 2025-11-18T19:25:36,560 adding 'galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml' 2025-11-18T19:25:36,562 adding 'galaxy/datatypes/converters/fasta_to_fai.xml' 2025-11-18T19:25:36,563 adding 'galaxy/datatypes/converters/fasta_to_len.py' 2025-11-18T19:25:36,564 adding 'galaxy/datatypes/converters/fasta_to_len.xml' 2025-11-18T19:25:36,565 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.py' 2025-11-18T19:25:36,567 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.xml' 2025-11-18T19:25:36,568 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.py' 2025-11-18T19:25:36,569 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.xml' 2025-11-18T19:25:36,571 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py' 2025-11-18T19:25:36,572 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml' 2025-11-18T19:25:36,573 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py' 2025-11-18T19:25:36,574 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml' 2025-11-18T19:25:36,576 adding 'galaxy/datatypes/converters/gff_to_bed_converter.py' 2025-11-18T19:25:36,577 adding 'galaxy/datatypes/converters/gff_to_bed_converter.xml' 2025-11-18T19:25:36,578 adding 'galaxy/datatypes/converters/gff_to_fli_converter.xml' 2025-11-18T19:25:36,580 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.py' 2025-11-18T19:25:36,581 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.xml' 2025-11-18T19:25:36,582 adding 'galaxy/datatypes/converters/gro_to_pdb.xml' 2025-11-18T19:25:36,583 adding 'galaxy/datatypes/converters/gz_to_uncompressed.xml' 2025-11-18T19:25:36,585 adding 'galaxy/datatypes/converters/inchi_to_mol_converter.xml' 2025-11-18T19:25:36,586 adding 'galaxy/datatypes/converters/interval_to_bed12_converter.xml' 2025-11-18T19:25:36,587 adding 'galaxy/datatypes/converters/interval_to_bed6_converter.xml' 2025-11-18T19:25:36,588 adding 'galaxy/datatypes/converters/interval_to_bed_converter.py' 2025-11-18T19:25:36,590 adding 'galaxy/datatypes/converters/interval_to_bed_converter.xml' 2025-11-18T19:25:36,591 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.py' 2025-11-18T19:25:36,593 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.xml' 2025-11-18T19:25:36,594 adding 'galaxy/datatypes/converters/interval_to_bgzip_converter.xml' 2025-11-18T19:25:36,595 adding 'galaxy/datatypes/converters/interval_to_bigwig_converter.xml' 2025-11-18T19:25:36,596 adding 'galaxy/datatypes/converters/interval_to_fli.py' 2025-11-18T19:25:36,598 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.py' 2025-11-18T19:25:36,599 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.xml' 2025-11-18T19:25:36,600 adding 'galaxy/datatypes/converters/interval_to_tabix_converter.xml' 2025-11-18T19:25:36,601 adding 'galaxy/datatypes/converters/len_to_linecount.xml' 2025-11-18T19:25:36,603 adding 'galaxy/datatypes/converters/lped_to_fped_converter.py' 2025-11-18T19:25:36,604 adding 'galaxy/datatypes/converters/lped_to_fped_converter.xml' 2025-11-18T19:25:36,606 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.py' 2025-11-18T19:25:36,607 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.xml' 2025-11-18T19:25:36,608 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.py' 2025-11-18T19:25:36,609 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.xml' 2025-11-18T19:25:36,610 adding 'galaxy/datatypes/converters/maf_to_interval_converter.py' 2025-11-18T19:25:36,612 adding 'galaxy/datatypes/converters/maf_to_interval_converter.xml' 2025-11-18T19:25:36,613 adding 'galaxy/datatypes/converters/mdconvert.xml' 2025-11-18T19:25:36,614 adding 'galaxy/datatypes/converters/mol2_to_mol_converter.xml' 2025-11-18T19:25:36,616 adding 'galaxy/datatypes/converters/molecules_converter.xml' 2025-11-18T19:25:36,617 adding 'galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml' 2025-11-18T19:25:36,618 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.py' 2025-11-18T19:25:36,620 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.xml' 2025-11-18T19:25:36,621 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.py' 2025-11-18T19:25:36,622 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.xml' 2025-11-18T19:25:36,624 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.py' 2025-11-18T19:25:36,625 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.xml' 2025-11-18T19:25:36,626 adding 'galaxy/datatypes/converters/pdb_to_gro.xml' 2025-11-18T19:25:36,627 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py' 2025-11-18T19:25:36,629 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml' 2025-11-18T19:25:36,630 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.py' 2025-11-18T19:25:36,631 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.xml' 2025-11-18T19:25:36,632 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py' 2025-11-18T19:25:36,634 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml' 2025-11-18T19:25:36,635 adding 'galaxy/datatypes/converters/sam_to_bigwig_converter.xml' 2025-11-18T19:25:36,636 adding 'galaxy/datatypes/converters/sam_to_unsorted_bam.xml' 2025-11-18T19:25:36,637 adding 'galaxy/datatypes/converters/smi_to_mol_converter.xml' 2025-11-18T19:25:36,639 adding 'galaxy/datatypes/converters/smi_to_smi_converter.xml' 2025-11-18T19:25:36,640 adding 'galaxy/datatypes/converters/tabular_csv.py' 2025-11-18T19:25:36,641 adding 'galaxy/datatypes/converters/tabular_to_csv.xml' 2025-11-18T19:25:36,642 adding 'galaxy/datatypes/converters/tabular_to_dbnsfp.xml' 2025-11-18T19:25:36,644 adding 'galaxy/datatypes/converters/tar_to_directory.xml' 2025-11-18T19:25:36,645 adding 'galaxy/datatypes/converters/to_coordinate_sorted_bam.xml' 2025-11-18T19:25:36,646 adding 'galaxy/datatypes/converters/to_qname_sorted_bam.xml' 2025-11-18T19:25:36,648 adding 'galaxy/datatypes/converters/uncompressed_to_gz.xml' 2025-11-18T19:25:36,649 adding 'galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml' 2025-11-18T19:25:36,650 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.py' 2025-11-18T19:25:36,651 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.xml' 2025-11-18T19:25:36,652 adding 'galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml' 2025-11-18T19:25:36,653 adding 'galaxy/datatypes/converters/wig_to_bigwig_converter.xml' 2025-11-18T19:25:36,655 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.py' 2025-11-18T19:25:36,656 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.xml' 2025-11-18T19:25:36,658 adding 'galaxy/datatypes/dataproviders/__init__.py' 2025-11-18T19:25:36,660 adding 'galaxy/datatypes/dataproviders/base.py' 2025-11-18T19:25:36,661 adding 'galaxy/datatypes/dataproviders/chunk.py' 2025-11-18T19:25:36,663 adding 'galaxy/datatypes/dataproviders/column.py' 2025-11-18T19:25:36,666 adding 'galaxy/datatypes/dataproviders/dataset.py' 2025-11-18T19:25:36,668 adding 'galaxy/datatypes/dataproviders/decorators.py' 2025-11-18T19:25:36,670 adding 'galaxy/datatypes/dataproviders/exceptions.py' 2025-11-18T19:25:36,671 adding 'galaxy/datatypes/dataproviders/external.py' 2025-11-18T19:25:36,673 adding 'galaxy/datatypes/dataproviders/hierarchy.py' 2025-11-18T19:25:36,675 adding 'galaxy/datatypes/dataproviders/line.py' 2025-11-18T19:25:36,676 adding 'galaxy/datatypes/display_applications/__init__.py' 2025-11-18T19:25:36,679 adding 'galaxy/datatypes/display_applications/application.py' 2025-11-18T19:25:36,681 adding 'galaxy/datatypes/display_applications/parameters.py' 2025-11-18T19:25:36,682 adding 'galaxy/datatypes/display_applications/util.py' 2025-11-18T19:25:36,684 adding 'galaxy/datatypes/display_applications/configs/biom/biom_simple.xml' 2025-11-18T19:25:36,686 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml' 2025-11-18T19:25:36,687 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml' 2025-11-18T19:25:36,689 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml' 2025-11-18T19:25:36,691 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml' 2025-11-18T19:25:36,692 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml' 2025-11-18T19:25:36,693 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml' 2025-11-18T19:25:36,695 adding 'galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml' 2025-11-18T19:25:36,697 adding 'galaxy/datatypes/display_applications/configs/igb/bam.xml' 2025-11-18T19:25:36,698 adding 'galaxy/datatypes/display_applications/configs/igb/bb.xml' 2025-11-18T19:25:36,699 adding 'galaxy/datatypes/display_applications/configs/igb/bed.xml' 2025-11-18T19:25:36,700 adding 'galaxy/datatypes/display_applications/configs/igb/bedgraph.xml' 2025-11-18T19:25:36,701 adding 'galaxy/datatypes/display_applications/configs/igb/bigwig.xml' 2025-11-18T19:25:36,703 adding 'galaxy/datatypes/display_applications/configs/igb/cram.xml' 2025-11-18T19:25:36,704 adding 'galaxy/datatypes/display_applications/configs/igb/gtf.xml' 2025-11-18T19:25:36,705 adding 'galaxy/datatypes/display_applications/configs/igb/wig.xml' 2025-11-18T19:25:36,707 adding 'galaxy/datatypes/display_applications/configs/igv/bam.xml' 2025-11-18T19:25:36,709 adding 'galaxy/datatypes/display_applications/configs/igv/bigwig.xml' 2025-11-18T19:25:36,710 adding 'galaxy/datatypes/display_applications/configs/igv/genbank.xml' 2025-11-18T19:25:36,712 adding 'galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml' 2025-11-18T19:25:36,713 adding 'galaxy/datatypes/display_applications/configs/igv/gff.xml' 2025-11-18T19:25:36,715 adding 'galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml' 2025-11-18T19:25:36,716 adding 'galaxy/datatypes/display_applications/configs/igv/vcf.xml' 2025-11-18T19:25:36,718 adding 'galaxy/datatypes/display_applications/configs/image/avivator.xml' 2025-11-18T19:25:36,720 adding 'galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml' 2025-11-18T19:25:36,721 adding 'galaxy/datatypes/display_applications/configs/iobio/bam.xml' 2025-11-18T19:25:36,722 adding 'galaxy/datatypes/display_applications/configs/iobio/vcf.xml' 2025-11-18T19:25:36,724 adding 'galaxy/datatypes/display_applications/configs/minerva/tabular.xml' 2025-11-18T19:25:36,726 adding 'galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml' 2025-11-18T19:25:36,727 adding 'galaxy/datatypes/display_applications/configs/rviewer/bed.xml' 2025-11-18T19:25:36,729 adding 'galaxy/datatypes/display_applications/configs/rviewer/vcf.xml' 2025-11-18T19:25:36,730 adding 'galaxy/datatypes/display_applications/configs/ucsc/bam.xml' 2025-11-18T19:25:36,731 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml' 2025-11-18T19:25:36,733 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml' 2025-11-18T19:25:36,734 adding 'galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml' 2025-11-18T19:25:36,735 adding 'galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml' 2025-11-18T19:25:36,736 adding 'galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml' 2025-11-18T19:25:36,738 adding 'galaxy/datatypes/display_applications/configs/ucsc/vcf.xml' 2025-11-18T19:25:36,740 adding 'galaxy/datatypes/display_applications/xsd/geda.xsd' 2025-11-18T19:25:36,742 adding 'galaxy/datatypes/util/__init__.py' 2025-11-18T19:25:36,743 adding 'galaxy/datatypes/util/generic_util.py' 2025-11-18T19:25:36,746 adding 'galaxy/datatypes/util/gff_util.py' 2025-11-18T19:25:36,749 adding 'galaxy/datatypes/util/maf_utilities.py' 2025-11-18T19:25:36,817 adding 'galaxy/model/__init__.py' 2025-11-18T19:25:36,825 adding 'galaxy/model/base.py' 2025-11-18T19:25:36,827 adding 'galaxy/model/custom_types.py' 2025-11-18T19:25:36,829 adding 'galaxy/model/database_heartbeat.py' 2025-11-18T19:25:36,831 adding 'galaxy/model/database_object_names.py' 2025-11-18T19:25:36,833 adding 'galaxy/model/database_utils.py' 2025-11-18T19:25:36,836 adding 'galaxy/model/deferred.py' 2025-11-18T19:25:36,837 adding 'galaxy/model/dereference.py' 2025-11-18T19:25:36,839 adding 'galaxy/model/index_filter_util.py' 2025-11-18T19:25:36,841 adding 'galaxy/model/item_attrs.py' 2025-11-18T19:25:36,843 adding 'galaxy/model/mapping.py' 2025-11-18T19:25:36,848 adding 'galaxy/model/metadata.py' 2025-11-18T19:25:36,850 adding 'galaxy/model/none_like.py' 2025-11-18T19:25:36,851 adding 'galaxy/model/scoped_session.py' 2025-11-18T19:25:36,867 adding 'galaxy/model/security.py' 2025-11-18T19:25:36,871 adding 'galaxy/model/tags.py' 2025-11-18T19:25:36,873 adding 'galaxy/model/dataset_collections/__init__.py' 2025-11-18T19:25:36,875 adding 'galaxy/model/dataset_collections/adapters.py' 2025-11-18T19:25:36,877 adding 'galaxy/model/dataset_collections/builder.py' 2025-11-18T19:25:36,878 adding 'galaxy/model/dataset_collections/matching.py' 2025-11-18T19:25:36,879 adding 'galaxy/model/dataset_collections/query.py' 2025-11-18T19:25:36,881 adding 'galaxy/model/dataset_collections/registry.py' 2025-11-18T19:25:36,882 adding 'galaxy/model/dataset_collections/structure.py' 2025-11-18T19:25:36,883 adding 'galaxy/model/dataset_collections/subcollections.py' 2025-11-18T19:25:36,885 adding 'galaxy/model/dataset_collections/type_description.py' 2025-11-18T19:25:36,887 adding 'galaxy/model/dataset_collections/types/__init__.py' 2025-11-18T19:25:36,888 adding 'galaxy/model/dataset_collections/types/list.py' 2025-11-18T19:25:36,889 adding 'galaxy/model/dataset_collections/types/paired.py' 2025-11-18T19:25:36,891 adding 'galaxy/model/dataset_collections/types/paired_or_unpaired.py' 2025-11-18T19:25:36,892 adding 'galaxy/model/dataset_collections/types/record.py' 2025-11-18T19:25:36,893 adding 'galaxy/model/dataset_collections/types/semantics.py' 2025-11-18T19:25:36,895 adding 'galaxy/model/db/__init__.py' 2025-11-18T19:25:36,896 adding 'galaxy/model/db/library.py' 2025-11-18T19:25:36,897 adding 'galaxy/model/db/role.py' 2025-11-18T19:25:36,898 adding 'galaxy/model/db/user.py' 2025-11-18T19:25:36,900 adding 'galaxy/model/migrations/README.md' 2025-11-18T19:25:36,902 adding 'galaxy/model/migrations/__init__.py' 2025-11-18T19:25:36,903 adding 'galaxy/model/migrations/alembic.ini' 2025-11-18T19:25:36,905 adding 'galaxy/model/migrations/base.py' 2025-11-18T19:25:36,907 adding 'galaxy/model/migrations/dbscript.py' 2025-11-18T19:25:36,908 adding 'galaxy/model/migrations/exceptions.py' 2025-11-18T19:25:36,909 adding 'galaxy/model/migrations/scripts.py' 2025-11-18T19:25:36,911 adding 'galaxy/model/migrations/util.py' 2025-11-18T19:25:36,913 adding 'galaxy/model/migrations/alembic/env.py' 2025-11-18T19:25:36,914 adding 'galaxy/model/migrations/alembic/script.py.mako' 2025-11-18T19:25:36,917 adding 'galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py' 2025-11-18T19:25:36,919 adding 'galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py' 2025-11-18T19:25:36,920 adding 'galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py' 2025-11-18T19:25:36,921 adding 'galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py' 2025-11-18T19:25:36,922 adding 'galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py' 2025-11-18T19:25:36,924 adding 'galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py' 2025-11-18T19:25:36,925 adding 'galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py' 2025-11-18T19:25:36,926 adding 'galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py' 2025-11-18T19:25:36,927 adding 'galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py' 2025-11-18T19:25:36,928 adding 'galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py' 2025-11-18T19:25:36,930 adding 'galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py' 2025-11-18T19:25:36,931 adding 'galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py' 2025-11-18T19:25:36,932 adding 'galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py' 2025-11-18T19:25:36,934 adding 'galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py' 2025-11-18T19:25:36,935 adding 'galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py' 2025-11-18T19:25:36,936 adding 'galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py' 2025-11-18T19:25:36,937 adding 'galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py' 2025-11-18T19:25:36,938 adding 'galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py' 2025-11-18T19:25:36,940 adding 'galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py' 2025-11-18T19:25:36,941 adding 'galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py' 2025-11-18T19:25:36,942 adding 'galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py' 2025-11-18T19:25:36,943 adding 'galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py' 2025-11-18T19:25:36,945 adding 'galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py' 2025-11-18T19:25:36,946 adding 'galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py' 2025-11-18T19:25:36,947 adding 'galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py' 2025-11-18T19:25:36,948 adding 'galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py' 2025-11-18T19:25:36,950 adding 'galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py' 2025-11-18T19:25:36,951 adding 'galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py' 2025-11-18T19:25:36,952 adding 'galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py' 2025-11-18T19:25:36,953 adding 'galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py' 2025-11-18T19:25:36,954 adding 'galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py' 2025-11-18T19:25:36,955 adding 'galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py' 2025-11-18T19:25:36,957 adding 'galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py' 2025-11-18T19:25:36,958 adding 'galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py' 2025-11-18T19:25:36,959 adding 'galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py' 2025-11-18T19:25:36,960 adding 'galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py' 2025-11-18T19:25:36,961 adding 'galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py' 2025-11-18T19:25:36,963 adding 'galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py' 2025-11-18T19:25:36,964 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py' 2025-11-18T19:25:36,965 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py' 2025-11-18T19:25:36,966 adding 'galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py' 2025-11-18T19:25:36,968 adding 'galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py' 2025-11-18T19:25:36,969 adding 'galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py' 2025-11-18T19:25:36,970 adding 'galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py' 2025-11-18T19:25:36,972 adding 'galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py' 2025-11-18T19:25:36,973 adding 'galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py' 2025-11-18T19:25:36,974 adding 'galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py' 2025-11-18T19:25:36,976 adding 'galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py' 2025-11-18T19:25:36,977 adding 'galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py' 2025-11-18T19:25:36,978 adding 'galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py' 2025-11-18T19:25:36,979 adding 'galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py' 2025-11-18T19:25:36,981 adding 'galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py' 2025-11-18T19:25:36,982 adding 'galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py' 2025-11-18T19:25:36,983 adding 'galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py' 2025-11-18T19:25:36,984 adding 'galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py' 2025-11-18T19:25:36,986 adding 'galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py' 2025-11-18T19:25:36,987 adding 'galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py' 2025-11-18T19:25:36,988 adding 'galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py' 2025-11-18T19:25:36,990 adding 'galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py' 2025-11-18T19:25:36,991 adding 'galaxy/model/migrations/data_fixes/__init__.py' 2025-11-18T19:25:36,993 adding 'galaxy/model/migrations/data_fixes/association_table_fixer.py' 2025-11-18T19:25:36,994 adding 'galaxy/model/migrations/data_fixes/user_table_fixer.py' 2025-11-18T19:25:36,996 adding 'galaxy/model/orm/__init__.py' 2025-11-18T19:25:36,997 adding 'galaxy/model/orm/engine_factory.py' 2025-11-18T19:25:36,998 adding 'galaxy/model/orm/now.py' 2025-11-18T19:25:37,000 adding 'galaxy/model/orm/scripts.py' 2025-11-18T19:25:37,001 adding 'galaxy/model/orm/util.py' 2025-11-18T19:25:37,002 adding 'galaxy/model/scripts/__init__.py' 2025-11-18T19:25:37,003 adding 'galaxy/model/scripts/delete_galaxy_sessions.py' 2025-11-18T19:25:37,005 adding 'galaxy/model/scripts/delete_job_metrics.py' 2025-11-18T19:25:37,006 adding 'galaxy/model/scripts/history_table_pruner.py' 2025-11-18T19:25:37,008 adding 'galaxy/model/scripts/prune_history_table.py' 2025-11-18T19:25:37,023 adding 'galaxy/model/store/__init__.py' 2025-11-18T19:25:37,025 adding 'galaxy/model/store/_bco_convert_utils.py' 2025-11-18T19:25:37,026 adding 'galaxy/model/store/build_objects.py' 2025-11-18T19:25:37,031 adding 'galaxy/model/store/discover.py' 2025-11-18T19:25:37,032 adding 'galaxy/model/store/load_objects.py' 2025-11-18T19:25:37,035 adding 'galaxy/model/store/ro_crate_utils.py' 2025-11-18T19:25:37,039 adding 'galaxy/model/tool_shed_install/__init__.py' 2025-11-18T19:25:37,040 adding 'galaxy/model/tool_shed_install/mapping.py' 2025-11-18T19:25:37,042 adding 'galaxy/model/triggers/__init__.py' 2025-11-18T19:25:37,043 adding 'galaxy/model/triggers/update_audit_table.py' 2025-11-18T19:25:37,045 adding 'galaxy/model/unittest_utils/__init__.py' 2025-11-18T19:25:37,046 adding 'galaxy/model/unittest_utils/beaker_testing_utils.py' 2025-11-18T19:25:37,047 adding 'galaxy/model/unittest_utils/data_app.py' 2025-11-18T19:25:37,049 adding 'galaxy/model/unittest_utils/db_helpers.py' 2025-11-18T19:25:37,050 adding 'galaxy/model/unittest_utils/migration_scripts_testing_utils.py' 2025-11-18T19:25:37,052 adding 'galaxy/model/unittest_utils/model_testing_utils.py' 2025-11-18T19:25:37,053 adding 'galaxy/model/unittest_utils/store_fixtures.py' 2025-11-18T19:25:37,054 adding 'galaxy/model/unittest_utils/utils.py' 2025-11-18T19:25:37,057 adding 'galaxy/quota/__init__.py' 2025-11-18T19:25:37,059 adding 'galaxy/quota/_schema.py' 2025-11-18T19:25:37,061 adding 'galaxy/security/__init__.py' 2025-11-18T19:25:37,062 adding 'galaxy/security/idencoding.py' 2025-11-18T19:25:37,065 adding 'galaxy/security/object_wrapper.py' 2025-11-18T19:25:37,066 adding 'galaxy/security/passwords.py' 2025-11-18T19:25:37,067 adding 'galaxy/security/ssh_util.py' 2025-11-18T19:25:37,069 adding 'galaxy/security/validate_user_input.py' 2025-11-18T19:25:37,071 adding 'galaxy/security/vault.py' 2025-11-18T19:25:37,075 adding 'galaxy_data-25.0.4.dist-info/licenses/LICENSE' 2025-11-18T19:25:37,082 adding 'galaxy_data-25.0.4.dist-info/METADATA' 2025-11-18T19:25:37,083 adding 'galaxy_data-25.0.4.dist-info/WHEEL' 2025-11-18T19:25:37,084 adding 'galaxy_data-25.0.4.dist-info/entry_points.txt' 2025-11-18T19:25:37,085 adding 'galaxy_data-25.0.4.dist-info/top_level.txt' 2025-11-18T19:25:37,091 adding 'galaxy_data-25.0.4.dist-info/RECORD' 2025-11-18T19:25:37,105 removing build/bdist.linux-armv7l/wheel 2025-11-18T19:25:37,277 Building wheel for galaxy-data (pyproject.toml): finished with status 'done' 2025-11-18T19:25:37,296 Created wheel for galaxy-data: filename=galaxy_data-25.0.4-py3-none-any.whl size=759873 sha256=2732406b2d569474376ba0d7cbc52e1b1cee697ed7da985bc3292776867e1a9d 2025-11-18T19:25:37,297 Stored in directory: /tmp/pip-ephem-wheel-cache-gf19nawd/wheels/f4/bd/ae/359ea3299da86cf13f23a31fc77ebe667645f567099c1a426d 2025-11-18T19:25:37,333 Successfully built galaxy-data 2025-11-18T19:25:37,355 Removed build tracker: '/tmp/pip-build-tracker-qo2attsc'