2025-11-19T11:08:22,683 Created temporary directory: /tmp/pip-ephem-wheel-cache-n264u1mf 2025-11-19T11:08:22,685 Created temporary directory: /tmp/pip-build-tracker-5aa7nokk 2025-11-19T11:08:22,686 Initialized build tracking at /tmp/pip-build-tracker-5aa7nokk 2025-11-19T11:08:22,686 Created build tracker: /tmp/pip-build-tracker-5aa7nokk 2025-11-19T11:08:22,686 Entered build tracker: /tmp/pip-build-tracker-5aa7nokk 2025-11-19T11:08:22,687 Created temporary directory: /tmp/pip-wheel-49sol0p9 2025-11-19T11:08:22,690 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-19T11:08:22,693 Created temporary directory: /tmp/pip-ephem-wheel-cache-cxmkwav0 2025-11-19T11:08:22,717 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-19T11:08:22,720 2 location(s) to search for versions of pangbank-cli: 2025-11-19T11:08:22,720 * https://pypi.org/simple/pangbank-cli/ 2025-11-19T11:08:22,720 * https://www.piwheels.org/simple/pangbank-cli/ 2025-11-19T11:08:22,721 Fetching project page and analyzing links: https://pypi.org/simple/pangbank-cli/ 2025-11-19T11:08:22,722 Getting page https://pypi.org/simple/pangbank-cli/ 2025-11-19T11:08:22,723 Found index url https://pypi.org/simple 2025-11-19T11:08:22,939 Fetched page https://pypi.org/simple/pangbank-cli/ as application/vnd.pypi.simple.v1+json 2025-11-19T11:08:22,941 Skipping link: No binaries permitted for pangbank-cli: https://files.pythonhosted.org/packages/3b/a3/79e90fb6a9472b795605e95f652fd42591ee7efa9b3aff84bf5eb5a3a81a/pangbank_cli-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pangbank-cli/) (requires-python:<3.14,>=3.10) 2025-11-19T11:08:22,943 Found link https://files.pythonhosted.org/packages/34/be/7bb5f560434868088c5fc92230238819f758d57d513b880cc4cdc780b3cb/pangbank_cli-0.1.1.tar.gz (from https://pypi.org/simple/pangbank-cli/) (requires-python:<3.14,>=3.10), version: 0.1.1 2025-11-19T11:08:22,944 Fetching project page and analyzing links: https://www.piwheels.org/simple/pangbank-cli/ 2025-11-19T11:08:22,945 Getting page https://www.piwheels.org/simple/pangbank-cli/ 2025-11-19T11:08:22,947 Found index url https://www.piwheels.org/simple 2025-11-19T11:08:23,144 Fetched page https://www.piwheels.org/simple/pangbank-cli/ as text/html 2025-11-19T11:08:23,146 Skipping link: not a file: https://www.piwheels.org/simple/pangbank-cli/ 2025-11-19T11:08:23,146 Skipping link: not a file: https://pypi.org/simple/pangbank-cli/ 2025-11-19T11:08:23,165 Given no hashes to check 1 links for project 'pangbank-cli': discarding no candidates 2025-11-19T11:08:23,183 Collecting pangbank-cli==0.1.1 2025-11-19T11:08:23,186 Created temporary directory: /tmp/pip-unpack-l1jlv18f 2025-11-19T11:08:23,398 Downloading pangbank_cli-0.1.1.tar.gz (33 kB) 2025-11-19T11:08:23,450 Added pangbank-cli==0.1.1 from https://files.pythonhosted.org/packages/34/be/7bb5f560434868088c5fc92230238819f758d57d513b880cc4cdc780b3cb/pangbank_cli-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-5aa7nokk' 2025-11-19T11:08:23,455 Created temporary directory: /tmp/pip-build-env-5_ys3j3n 2025-11-19T11:08:23,459 Installing build dependencies: started 2025-11-19T11:08:23,461 Running command pip subprocess to install build dependencies 2025-11-19T11:08:24,629 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-19T11:08:25,252 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-19T11:08:25,276 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-19T11:08:27,005 Collecting setuptools>=61.0.0 2025-11-19T11:08:27,147 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-19T11:08:30,073 Installing collected packages: setuptools 2025-11-19T11:08:33,736 Successfully installed setuptools-80.9.0 2025-11-19T11:08:34,000 Installing build dependencies: finished with status 'done' 2025-11-19T11:08:34,007 Getting requirements to build wheel: started 2025-11-19T11:08:34,008 Running command Getting requirements to build wheel 2025-11-19T11:08:34,612 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-19T11:08:34,612 !! 2025-11-19T11:08:34,613 ******************************************************************************** 2025-11-19T11:08:34,614 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-19T11:08:34,615 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-19T11:08:34,615 or your builds will no longer be supported. 2025-11-19T11:08:34,616 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:34,617 ******************************************************************************** 2025-11-19T11:08:34,618 !! 2025-11-19T11:08:34,618 corresp(dist, value, root_dir) 2025-11-19T11:08:34,707 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-19T11:08:34,708 !! 2025-11-19T11:08:34,709 ******************************************************************************** 2025-11-19T11:08:34,709 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-19T11:08:34,710 License :: OSI Approved :: MIT License 2025-11-19T11:08:34,712 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:34,712 ******************************************************************************** 2025-11-19T11:08:34,714 !! 2025-11-19T11:08:34,714 dist._finalize_license_expression() 2025-11-19T11:08:34,716 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-19T11:08:34,717 !! 2025-11-19T11:08:34,718 ******************************************************************************** 2025-11-19T11:08:34,719 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-19T11:08:34,720 License :: OSI Approved :: MIT License 2025-11-19T11:08:34,721 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:34,722 ******************************************************************************** 2025-11-19T11:08:34,723 !! 2025-11-19T11:08:34,724 self._finalize_license_expression() 2025-11-19T11:08:34,728 running egg_info 2025-11-19T11:08:34,735 writing PanGBank_cli.egg-info/PKG-INFO 2025-11-19T11:08:34,742 writing dependency_links to PanGBank_cli.egg-info/dependency_links.txt 2025-11-19T11:08:34,745 writing entry points to PanGBank_cli.egg-info/entry_points.txt 2025-11-19T11:08:34,748 writing requirements to PanGBank_cli.egg-info/requires.txt 2025-11-19T11:08:34,749 writing top-level names to PanGBank_cli.egg-info/top_level.txt 2025-11-19T11:08:34,771 reading manifest file 'PanGBank_cli.egg-info/SOURCES.txt' 2025-11-19T11:08:34,774 adding license file 'LICENCE' 2025-11-19T11:08:34,777 writing manifest file 'PanGBank_cli.egg-info/SOURCES.txt' 2025-11-19T11:08:34,877 Getting requirements to build wheel: finished with status 'done' 2025-11-19T11:08:34,881 Created temporary directory: /tmp/pip-modern-metadata-yxm21ohy 2025-11-19T11:08:34,883 Preparing metadata (pyproject.toml): started 2025-11-19T11:08:34,884 Running command Preparing metadata (pyproject.toml) 2025-11-19T11:08:35,434 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-19T11:08:35,434 !! 2025-11-19T11:08:35,435 ******************************************************************************** 2025-11-19T11:08:35,436 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-19T11:08:35,437 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-19T11:08:35,437 or your builds will no longer be supported. 2025-11-19T11:08:35,438 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:35,439 ******************************************************************************** 2025-11-19T11:08:35,440 !! 2025-11-19T11:08:35,440 corresp(dist, value, root_dir) 2025-11-19T11:08:35,516 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-19T11:08:35,516 !! 2025-11-19T11:08:35,517 ******************************************************************************** 2025-11-19T11:08:35,518 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-19T11:08:35,519 License :: OSI Approved :: MIT License 2025-11-19T11:08:35,520 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:35,521 ******************************************************************************** 2025-11-19T11:08:35,522 !! 2025-11-19T11:08:35,523 dist._finalize_license_expression() 2025-11-19T11:08:35,524 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-19T11:08:35,524 !! 2025-11-19T11:08:35,526 ******************************************************************************** 2025-11-19T11:08:35,526 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-19T11:08:35,528 License :: OSI Approved :: MIT License 2025-11-19T11:08:35,529 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:35,529 ******************************************************************************** 2025-11-19T11:08:35,530 !! 2025-11-19T11:08:35,531 self._finalize_license_expression() 2025-11-19T11:08:35,532 running dist_info 2025-11-19T11:08:35,541 creating /tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info 2025-11-19T11:08:35,541 writing /tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/PKG-INFO 2025-11-19T11:08:35,547 writing dependency_links to /tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/dependency_links.txt 2025-11-19T11:08:35,549 writing entry points to /tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/entry_points.txt 2025-11-19T11:08:35,552 writing requirements to /tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/requires.txt 2025-11-19T11:08:35,553 writing top-level names to /tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/top_level.txt 2025-11-19T11:08:35,554 writing manifest file '/tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/SOURCES.txt' 2025-11-19T11:08:35,573 reading manifest file '/tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/SOURCES.txt' 2025-11-19T11:08:35,575 adding license file 'LICENCE' 2025-11-19T11:08:35,578 writing manifest file '/tmp/pip-modern-metadata-yxm21ohy/PanGBank_cli.egg-info/SOURCES.txt' 2025-11-19T11:08:35,579 creating '/tmp/pip-modern-metadata-yxm21ohy/pangbank_cli-0.1.1.dist-info' 2025-11-19T11:08:35,705 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-19T11:08:35,714 Source in /tmp/pip-wheel-49sol0p9/pangbank-cli_1ce73bf3bf4348ce89d8900d75ac1552 has version 0.1.1, which satisfies requirement pangbank-cli==0.1.1 from https://files.pythonhosted.org/packages/34/be/7bb5f560434868088c5fc92230238819f758d57d513b880cc4cdc780b3cb/pangbank_cli-0.1.1.tar.gz 2025-11-19T11:08:35,715 Removed pangbank-cli==0.1.1 from https://files.pythonhosted.org/packages/34/be/7bb5f560434868088c5fc92230238819f758d57d513b880cc4cdc780b3cb/pangbank_cli-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-5aa7nokk' 2025-11-19T11:08:35,731 Created temporary directory: /tmp/pip-unpack-bh31vww1 2025-11-19T11:08:35,732 Building wheels for collected packages: pangbank-cli 2025-11-19T11:08:35,736 Created temporary directory: /tmp/pip-wheel-3nkyz9zz 2025-11-19T11:08:35,736 Destination directory: /tmp/pip-wheel-3nkyz9zz 2025-11-19T11:08:35,738 Building wheel for pangbank-cli (pyproject.toml): started 2025-11-19T11:08:35,740 Running command Building wheel for pangbank-cli (pyproject.toml) 2025-11-19T11:08:36,292 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-19T11:08:36,292 !! 2025-11-19T11:08:36,293 ******************************************************************************** 2025-11-19T11:08:36,294 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-19T11:08:36,295 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-19T11:08:36,296 or your builds will no longer be supported. 2025-11-19T11:08:36,297 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:36,298 ******************************************************************************** 2025-11-19T11:08:36,299 !! 2025-11-19T11:08:36,299 corresp(dist, value, root_dir) 2025-11-19T11:08:36,371 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-19T11:08:36,372 !! 2025-11-19T11:08:36,373 ******************************************************************************** 2025-11-19T11:08:36,373 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-19T11:08:36,375 License :: OSI Approved :: MIT License 2025-11-19T11:08:36,376 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:36,376 ******************************************************************************** 2025-11-19T11:08:36,377 !! 2025-11-19T11:08:36,378 dist._finalize_license_expression() 2025-11-19T11:08:36,379 /tmp/pip-build-env-5_ys3j3n/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-19T11:08:36,379 !! 2025-11-19T11:08:36,380 ******************************************************************************** 2025-11-19T11:08:36,381 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-19T11:08:36,383 License :: OSI Approved :: MIT License 2025-11-19T11:08:36,384 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-19T11:08:36,385 ******************************************************************************** 2025-11-19T11:08:36,386 !! 2025-11-19T11:08:36,386 self._finalize_license_expression() 2025-11-19T11:08:36,387 running bdist_wheel 2025-11-19T11:08:36,401 running build 2025-11-19T11:08:36,402 running build_py 2025-11-19T11:08:36,408 creating build/lib/pangbank_cli 2025-11-19T11:08:36,411 copying pangbank_cli/collections.py -> build/lib/pangbank_cli 2025-11-19T11:08:36,413 copying pangbank_cli/match_pangenome.py -> build/lib/pangbank_cli 2025-11-19T11:08:36,415 copying pangbank_cli/pangenomes.py -> build/lib/pangbank_cli 2025-11-19T11:08:36,418 copying pangbank_cli/__init__.py -> build/lib/pangbank_cli 2025-11-19T11:08:36,420 copying pangbank_cli/utils.py -> build/lib/pangbank_cli 2025-11-19T11:08:36,422 copying pangbank_cli/main.py -> build/lib/pangbank_cli 2025-11-19T11:08:36,424 running egg_info 2025-11-19T11:08:36,435 writing PanGBank_cli.egg-info/PKG-INFO 2025-11-19T11:08:36,441 writing dependency_links to PanGBank_cli.egg-info/dependency_links.txt 2025-11-19T11:08:36,442 writing entry points to PanGBank_cli.egg-info/entry_points.txt 2025-11-19T11:08:36,444 writing requirements to PanGBank_cli.egg-info/requires.txt 2025-11-19T11:08:36,445 writing top-level names to PanGBank_cli.egg-info/top_level.txt 2025-11-19T11:08:36,455 reading manifest file 'PanGBank_cli.egg-info/SOURCES.txt' 2025-11-19T11:08:36,457 adding license file 'LICENCE' 2025-11-19T11:08:36,460 writing manifest file 'PanGBank_cli.egg-info/SOURCES.txt' 2025-11-19T11:08:36,473 installing to build/bdist.linux-armv7l/wheel 2025-11-19T11:08:36,474 running install 2025-11-19T11:08:36,498 running install_lib 2025-11-19T11:08:36,504 creating build/bdist.linux-armv7l/wheel 2025-11-19T11:08:36,506 creating build/bdist.linux-armv7l/wheel/pangbank_cli 2025-11-19T11:08:36,507 copying build/lib/pangbank_cli/collections.py -> build/bdist.linux-armv7l/wheel/./pangbank_cli 2025-11-19T11:08:36,510 copying build/lib/pangbank_cli/match_pangenome.py -> build/bdist.linux-armv7l/wheel/./pangbank_cli 2025-11-19T11:08:36,512 copying build/lib/pangbank_cli/pangenomes.py -> build/bdist.linux-armv7l/wheel/./pangbank_cli 2025-11-19T11:08:36,515 copying build/lib/pangbank_cli/__init__.py -> build/bdist.linux-armv7l/wheel/./pangbank_cli 2025-11-19T11:08:36,517 copying build/lib/pangbank_cli/utils.py -> build/bdist.linux-armv7l/wheel/./pangbank_cli 2025-11-19T11:08:36,519 copying build/lib/pangbank_cli/main.py -> build/bdist.linux-armv7l/wheel/./pangbank_cli 2025-11-19T11:08:36,521 running install_egg_info 2025-11-19T11:08:36,527 Copying PanGBank_cli.egg-info to build/bdist.linux-armv7l/wheel/./PanGBank_cli-0.1.1-py3.11.egg-info 2025-11-19T11:08:36,540 running install_scripts 2025-11-19T11:08:36,554 creating build/bdist.linux-armv7l/wheel/pangbank_cli-0.1.1.dist-info/WHEEL 2025-11-19T11:08:36,557 creating '/tmp/pip-wheel-3nkyz9zz/.tmp-5u7uvgan/pangbank_cli-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-19T11:08:36,559 adding 'pangbank_cli/__init__.py' 2025-11-19T11:08:36,561 adding 'pangbank_cli/collections.py' 2025-11-19T11:08:36,563 adding 'pangbank_cli/main.py' 2025-11-19T11:08:36,565 adding 'pangbank_cli/match_pangenome.py' 2025-11-19T11:08:36,568 adding 'pangbank_cli/pangenomes.py' 2025-11-19T11:08:36,569 adding 'pangbank_cli/utils.py' 2025-11-19T11:08:36,575 adding 'pangbank_cli-0.1.1.dist-info/licenses/LICENCE' 2025-11-19T11:08:36,579 adding 'pangbank_cli-0.1.1.dist-info/METADATA' 2025-11-19T11:08:36,581 adding 'pangbank_cli-0.1.1.dist-info/WHEEL' 2025-11-19T11:08:36,582 adding 'pangbank_cli-0.1.1.dist-info/entry_points.txt' 2025-11-19T11:08:36,583 adding 'pangbank_cli-0.1.1.dist-info/top_level.txt' 2025-11-19T11:08:36,584 adding 'pangbank_cli-0.1.1.dist-info/RECORD' 2025-11-19T11:08:36,585 removing build/bdist.linux-armv7l/wheel 2025-11-19T11:08:36,688 Building wheel for pangbank-cli (pyproject.toml): finished with status 'done' 2025-11-19T11:08:36,693 Created wheel for pangbank-cli: filename=pangbank_cli-0.1.1-py3-none-any.whl size=31918 sha256=42339aac7c4915c1f68b26fd247bf765f7684af7d6e4277055851d65559df762 2025-11-19T11:08:36,694 Stored in directory: /tmp/pip-ephem-wheel-cache-cxmkwav0/wheels/60/4f/e1/481569e184c9f6b5f93cad5fddd9bb73c63310a4f042776f06 2025-11-19T11:08:36,721 Successfully built pangbank-cli 2025-11-19T11:08:36,724 Removed build tracker: '/tmp/pip-build-tracker-5aa7nokk'