2025-11-20T15:07:36,480 Created temporary directory: /tmp/pip-ephem-wheel-cache-ryl68d47 2025-11-20T15:07:36,482 Created temporary directory: /tmp/pip-build-tracker-ia0ivutm 2025-11-20T15:07:36,483 Initialized build tracking at /tmp/pip-build-tracker-ia0ivutm 2025-11-20T15:07:36,483 Created build tracker: /tmp/pip-build-tracker-ia0ivutm 2025-11-20T15:07:36,484 Entered build tracker: /tmp/pip-build-tracker-ia0ivutm 2025-11-20T15:07:36,484 Created temporary directory: /tmp/pip-wheel-016fhy3x 2025-11-20T15:07:36,487 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-20T15:07:36,490 Created temporary directory: /tmp/pip-ephem-wheel-cache-wax66nrm 2025-11-20T15:07:36,511 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-20T15:07:36,515 2 location(s) to search for versions of xicommon: 2025-11-20T15:07:36,515 * https://pypi.org/simple/xicommon/ 2025-11-20T15:07:36,515 * https://www.piwheels.org/simple/xicommon/ 2025-11-20T15:07:36,516 Fetching project page and analyzing links: https://pypi.org/simple/xicommon/ 2025-11-20T15:07:36,516 Getting page https://pypi.org/simple/xicommon/ 2025-11-20T15:07:36,518 Found index url https://pypi.org/simple 2025-11-20T15:07:36,736 Fetched page https://pypi.org/simple/xicommon/ as application/vnd.pypi.simple.v1+json 2025-11-20T15:07:36,739 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/11/4b/24e68e6e2d923d1bae1cc35a78c09e787c67e5b72d3a99df8a06291963ca/xicommon-1.0.3rc1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,740 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/3a/ec/d0904bede98861e4150d1b5e8cf2eb99e1a3542eecb13d0f67e05ddf8611/xicommon-1.0.3rc1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,741 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/82/3d/841600e2a204f5919932b0e8b4e116833a0ceb4469fdb4f990ddce2d999d/xicommon-1.0.3rc1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,741 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/9d/e7/96d9d11c71f5df37180ef484885dd575f6c00b7e88e0e3c0afbcdcaa93a7/xicommon-1.0.3rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,742 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/9e/39/f967732a0c728dc5a0851946597110eb1520d29e163dd8e93a1b42b56a0a/xicommon-1.0.3rc1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,743 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/91/d8/cbee128f0ba9afbe16cd0955db4d8978e1aa02abb63bf0b713dd40dc1ba7/xicommon-1.0.3rc1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,743 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c0/49/52a3bf69fe0f2f220679cabdfe9e10b238bbe1022b17320e352e1e83e7cc/xicommon-1.0.3rc1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,744 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/1e/25/47ee525df9205123843832363642d6c8eecd45c2d4ebf725e25d09fca490/xicommon-1.0.3rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,745 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/e4/c5/1cf163009e4ce54cf58384ed59eacb779ec3630924126198b2eb4f06dc46/xicommon-1.0.3rc1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,746 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/6a/26/93fc165059d68163c838be471068a1d8288d7fcd6239af215841460a200b/xicommon-1.0.3rc1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,746 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/59/c2/3352d20b5133ed8d1d0f4c6ea42b263a9cd2e7c31c3b075b0ca68a280be6/xicommon-1.0.3rc1-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,746 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c9/6d/c3a01029fad63e178ea191f59a7d7f63fbf8893001e2d47feb63abd0dfda/xicommon-1.0.3rc1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-11-20T15:07:36,747 Found link https://files.pythonhosted.org/packages/77/f3/b608d7de556dc016159e03740efe26725d182a0873967fbd62cfcd60a708/xicommon-1.0.3rc1.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.3rc1 2025-11-20T15:07:36,748 Fetching project page and analyzing links: https://www.piwheels.org/simple/xicommon/ 2025-11-20T15:07:36,749 Getting page https://www.piwheels.org/simple/xicommon/ 2025-11-20T15:07:36,750 Found index url https://www.piwheels.org/simple 2025-11-20T15:07:36,917 Fetched page https://www.piwheels.org/simple/xicommon/ as text/html 2025-11-20T15:07:36,919 Skipping link: not a file: https://www.piwheels.org/simple/xicommon/ 2025-11-20T15:07:36,919 Skipping link: not a file: https://pypi.org/simple/xicommon/ 2025-11-20T15:07:36,938 Given no hashes to check 1 links for project 'xicommon': discarding no candidates 2025-11-20T15:07:36,955 Collecting xicommon==1.0.3rc1 2025-11-20T15:07:36,958 Created temporary directory: /tmp/pip-unpack-b2prmegf 2025-11-20T15:07:37,098 Downloading xicommon-1.0.3rc1.tar.gz (74.4 MB) 2025-11-20T15:07:47,349 Added xicommon==1.0.3rc1 from https://files.pythonhosted.org/packages/77/f3/b608d7de556dc016159e03740efe26725d182a0873967fbd62cfcd60a708/xicommon-1.0.3rc1.tar.gz to build tracker '/tmp/pip-build-tracker-ia0ivutm' 2025-11-20T15:07:47,358 Created temporary directory: /tmp/pip-build-env-zrxv19ak 2025-11-20T15:07:47,363 Installing build dependencies: started 2025-11-20T15:07:47,364 Running command pip subprocess to install build dependencies 2025-11-20T15:07:48,493 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-20T15:07:49,126 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-20T15:07:49,149 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-20T15:07:50,879 Collecting setuptools>=42 2025-11-20T15:07:50,977 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-20T15:07:51,285 Collecting wheel 2025-11-20T15:07:51,302 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-11-20T15:07:51,810 Collecting setuptools_scm 2025-11-20T15:07:51,827 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-11-20T15:07:53,749 Collecting Cython>=3.0.0 2025-11-20T15:07:54,550 Using cached https://www.piwheels.org/simple/cython/cython-3.2.1-cp311-cp311-linux_armv7l.whl (11.1 MB) 2025-11-20T15:07:55,812 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-11-20T15:07:55,819 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-11-20T15:07:55,826 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-11-20T15:07:55,832 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-11-20T15:07:55,839 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-11-20T15:07:56,462 Collecting numpy>=1.20 2025-11-20T15:07:56,908 Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.5-cp311-cp311-linux_armv7l.whl (6.1 MB) 2025-11-20T15:07:57,269 Collecting packaging>=20 2025-11-20T15:07:57,285 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-11-20T15:08:00,252 Installing collected packages: wheel, setuptools, packaging, numpy, Cython, setuptools_scm 2025-11-20T15:08:00,495 Creating /tmp/pip-build-env-zrxv19ak/overlay/local/bin 2025-11-20T15:08:00,497 changing mode of /tmp/pip-build-env-zrxv19ak/overlay/local/bin/wheel to 755 2025-11-20T15:08:13,227 changing mode of /tmp/pip-build-env-zrxv19ak/overlay/local/bin/f2py to 755 2025-11-20T15:08:13,229 changing mode of /tmp/pip-build-env-zrxv19ak/overlay/local/bin/numpy-config to 755 2025-11-20T15:08:16,953 changing mode of /tmp/pip-build-env-zrxv19ak/overlay/local/bin/cygdb to 755 2025-11-20T15:08:16,955 changing mode of /tmp/pip-build-env-zrxv19ak/overlay/local/bin/cython to 755 2025-11-20T15:08:16,957 changing mode of /tmp/pip-build-env-zrxv19ak/overlay/local/bin/cythonize to 755 2025-11-20T15:08:17,220 changing mode of /tmp/pip-build-env-zrxv19ak/overlay/local/bin/setuptools-scm to 755 2025-11-20T15:08:17,269 Successfully installed Cython-3.2.1 numpy-2.3.5 packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 wheel-0.45.1 2025-11-20T15:08:17,737 Installing build dependencies: finished with status 'done' 2025-11-20T15:08:17,744 Getting requirements to build wheel: started 2025-11-20T15:08:17,746 Running command Getting requirements to build wheel 2025-11-20T15:08:25,574 Compiling xicommon/cython/argsort_byte_ranges.pyx because it depends on /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-11-20T15:08:25,574 Compiling xicommon/cython/compare_byte_ranges.pyx because it depends on /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-11-20T15:08:25,575 [1/2] Cythonizing xicommon/cython/argsort_byte_ranges.pyx 2025-11-20T15:08:25,575 [2/2] Cythonizing xicommon/cython/compare_byte_ranges.pyx 2025-11-20T15:08:25,699 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-11-20T15:08:25,739 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-016fhy3x/xicommon_24910dbcc6174f67bec6e6668bf7361c/README.md' cannot be found 2025-11-20T15:08:25,740 return '\n'.join( 2025-11-20T15:08:25,741 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-20T15:08:25,741 !! 2025-11-20T15:08:25,742 ******************************************************************************** 2025-11-20T15:08:25,743 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-20T15:08:25,744 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-20T15:08:25,744 or your builds will no longer be supported. 2025-11-20T15:08:25,746 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-20T15:08:25,746 ******************************************************************************** 2025-11-20T15:08:25,747 !! 2025-11-20T15:08:25,748 corresp(dist, value, root_dir) 2025-11-20T15:08:25,846 running egg_info 2025-11-20T15:08:25,859 writing xicommon.egg-info/PKG-INFO 2025-11-20T15:08:25,866 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-11-20T15:08:25,870 writing requirements to xicommon.egg-info/requires.txt 2025-11-20T15:08:25,871 writing top-level names to xicommon.egg-info/top_level.txt 2025-11-20T15:08:25,907 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,907 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,908 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,909 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,909 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,910 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,911 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,911 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,912 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,912 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,913 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,913 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,914 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,915 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,915 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,915 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,916 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,916 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,917 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,917 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,918 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,919 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,919 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,920 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,921 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,921 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,922 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,922 dependency 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/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:25,954 listing git files failed - pretending there aren't any 2025-11-20T15:08:25,961 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-11-20T15:08:25,983 adding license file 'COPYING' 2025-11-20T15:08:25,984 adding license file 'COPYING.LESSER' 2025-11-20T15:08:25,991 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-11-20T15:08:26,701 Getting requirements to build wheel: finished with status 'done' 2025-11-20T15:08:26,704 Created temporary directory: /tmp/pip-modern-metadata-z9wyda5s 2025-11-20T15:08:26,707 Preparing metadata (pyproject.toml): started 2025-11-20T15:08:26,708 Running command Preparing metadata (pyproject.toml) 2025-11-20T15:08:28,562 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-11-20T15:08:28,600 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-016fhy3x/xicommon_24910dbcc6174f67bec6e6668bf7361c/README.md' cannot be found 2025-11-20T15:08:28,601 return '\n'.join( 2025-11-20T15:08:28,602 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-20T15:08:28,603 !! 2025-11-20T15:08:28,604 ******************************************************************************** 2025-11-20T15:08:28,605 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-20T15:08:28,606 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-20T15:08:28,606 or your builds will no longer be supported. 2025-11-20T15:08:28,608 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-20T15:08:28,608 ******************************************************************************** 2025-11-20T15:08:28,609 !! 2025-11-20T15:08:28,610 corresp(dist, value, root_dir) 2025-11-20T15:08:28,701 running dist_info 2025-11-20T15:08:28,717 creating /tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info 2025-11-20T15:08:28,718 writing /tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info/PKG-INFO 2025-11-20T15:08:28,725 writing dependency_links to /tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info/dependency_links.txt 2025-11-20T15:08:28,729 writing requirements to /tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info/requires.txt 2025-11-20T15:08:28,730 writing top-level names to /tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info/top_level.txt 2025-11-20T15:08:28,731 writing manifest file '/tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info/SOURCES.txt' 2025-11-20T15:08:28,763 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,763 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,764 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,764 dependency 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/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,791 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,792 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,792 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,793 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,794 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,795 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:28,809 listing git files failed - pretending there aren't any 2025-11-20T15:08:28,815 reading manifest file '/tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info/SOURCES.txt' 2025-11-20T15:08:28,818 adding license file 'COPYING' 2025-11-20T15:08:28,818 adding license file 'COPYING.LESSER' 2025-11-20T15:08:28,822 writing manifest file '/tmp/pip-modern-metadata-z9wyda5s/xicommon.egg-info/SOURCES.txt' 2025-11-20T15:08:28,823 creating '/tmp/pip-modern-metadata-z9wyda5s/xicommon-1.0.3rc1.dist-info' 2025-11-20T15:08:29,041 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-20T15:08:29,046 Source in /tmp/pip-wheel-016fhy3x/xicommon_24910dbcc6174f67bec6e6668bf7361c has version 1.0.3rc1, which satisfies requirement xicommon==1.0.3rc1 from https://files.pythonhosted.org/packages/77/f3/b608d7de556dc016159e03740efe26725d182a0873967fbd62cfcd60a708/xicommon-1.0.3rc1.tar.gz 2025-11-20T15:08:29,047 Removed xicommon==1.0.3rc1 from https://files.pythonhosted.org/packages/77/f3/b608d7de556dc016159e03740efe26725d182a0873967fbd62cfcd60a708/xicommon-1.0.3rc1.tar.gz from build tracker '/tmp/pip-build-tracker-ia0ivutm' 2025-11-20T15:08:29,052 Created temporary directory: /tmp/pip-unpack-_zloilyb 2025-11-20T15:08:29,053 Building wheels for collected packages: xicommon 2025-11-20T15:08:29,057 Created temporary directory: /tmp/pip-wheel-4d7afj3w 2025-11-20T15:08:29,058 Destination directory: /tmp/pip-wheel-4d7afj3w 2025-11-20T15:08:29,061 Building wheel for xicommon (pyproject.toml): started 2025-11-20T15:08:29,062 Running command Building wheel for xicommon (pyproject.toml) 2025-11-20T15:08:30,817 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-11-20T15:08:30,854 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-016fhy3x/xicommon_24910dbcc6174f67bec6e6668bf7361c/README.md' cannot be found 2025-11-20T15:08:30,855 return '\n'.join( 2025-11-20T15:08:30,856 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-11-20T15:08:30,857 !! 2025-11-20T15:08:30,858 ******************************************************************************** 2025-11-20T15:08:30,859 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-11-20T15:08:30,860 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-11-20T15:08:30,860 or your builds will no longer be supported. 2025-11-20T15:08:30,861 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-20T15:08:30,862 ******************************************************************************** 2025-11-20T15:08:30,863 !! 2025-11-20T15:08:30,864 corresp(dist, value, root_dir) 2025-11-20T15:08:30,942 running bdist_wheel 2025-11-20T15:08:30,972 running build 2025-11-20T15:08:30,972 running build_py 2025-11-20T15:08:30,981 creating build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:30,984 copying xicommon/mock_context.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:30,986 copying xicommon/fragment_peptides.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:30,989 copying xicommon/simple_databases.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:30,992 copying xicommon/config.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:30,996 copying xicommon/const.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:30,998 copying xicommon/context_base.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,000 copying xicommon/spectra_reader.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,003 copying xicommon/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,005 copying xicommon/synthetic_spectra.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,007 copying xicommon/helper.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,010 copying xicommon/mass.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,012 copying xicommon/output_format.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,014 copying xicommon/modifications.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,016 copying xicommon/xi_logging.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,019 copying xicommon/dtypes.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,021 copying xicommon/cache.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,023 copying xicommon/utils.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,025 copying xicommon/fragmentation.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-11-20T15:08:31,027 running egg_info 2025-11-20T15:08:31,043 writing xicommon.egg-info/PKG-INFO 2025-11-20T15:08:31,049 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-11-20T15:08:31,053 writing requirements to xicommon.egg-info/requires.txt 2025-11-20T15:08:31,054 writing top-level names to xicommon.egg-info/top_level.txt 2025-11-20T15:08:31,063 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,064 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,065 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,065 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,066 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,067 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,067 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,068 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,068 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,069 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,069 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,070 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,071 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,071 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,072 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,072 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,073 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,073 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,074 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,074 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,075 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,076 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,076 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,077 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,077 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,078 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,079 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,079 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,080 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,081 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,081 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,082 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,082 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,083 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,083 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,084 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,084 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,085 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,085 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,086 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,087 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,087 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,088 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,089 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,089 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,090 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,090 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,091 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,091 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,092 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,092 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,093 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,093 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,094 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,094 dependency /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-11-20T15:08:31,104 listing git files failed - pretending there aren't any 2025-11-20T15:08:31,110 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-11-20T15:08:31,119 adding license file 'COPYING' 2025-11-20T15:08:31,120 adding license file 'COPYING.LESSER' 2025-11-20T15:08:31,127 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-11-20T15:08:31,132 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.cython' is absent from the `packages` configuration. 2025-11-20T15:08:31,133 !! 2025-11-20T15:08:31,134 ******************************************************************************** 2025-11-20T15:08:31,135 ############################ 2025-11-20T15:08:31,136 # Package would be ignored # 2025-11-20T15:08:31,136 ############################ 2025-11-20T15:08:31,137 Python recognizes 'xicommon.cython' as an importable package[^1], 2025-11-20T15:08:31,137 but it is absent from setuptools' `packages` configuration. 2025-11-20T15:08:31,139 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-20T15:08:31,139 package, please make sure that 'xicommon.cython' is explicitly added 2025-11-20T15:08:31,140 to the `packages` configuration field. 2025-11-20T15:08:31,141 Alternatively, you can also rely on setuptools' discovery methods 2025-11-20T15:08:31,141 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-20T15:08:31,142 instead of `find_packages(...)`/`find:`). 2025-11-20T15:08:31,143 You can read more about "package discovery" on setuptools documentation page: 2025-11-20T15:08:31,144 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-20T15:08:31,145 If you don't want 'xicommon.cython' to be distributed and are 2025-11-20T15:08:31,146 already explicitly excluding 'xicommon.cython' via 2025-11-20T15:08:31,146 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-20T15:08:31,147 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-20T15:08:31,148 combination with a more fine grained `package-data` configuration. 2025-11-20T15:08:31,149 You can read more about "package data files" on setuptools documentation page: 2025-11-20T15:08:31,150 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-20T15:08:31,151 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-20T15:08:31,151 even if it does not contain any `.py` files. 2025-11-20T15:08:31,152 On the other hand, currently there is no concept of package data 2025-11-20T15:08:31,152 directory, all directories are treated like packages. 2025-11-20T15:08:31,153 ******************************************************************************** 2025-11-20T15:08:31,154 !! 2025-11-20T15:08:31,154 check.warn(importable) 2025-11-20T15:08:31,155 /tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.filters' is absent from the `packages` configuration. 2025-11-20T15:08:31,159 !! 2025-11-20T15:08:31,163 ******************************************************************************** 2025-11-20T15:08:31,164 ############################ 2025-11-20T15:08:31,165 # Package would be ignored # 2025-11-20T15:08:31,166 ############################ 2025-11-20T15:08:31,166 Python recognizes 'xicommon.filters' as an importable package[^1], 2025-11-20T15:08:31,167 but it is absent from setuptools' `packages` configuration. 2025-11-20T15:08:31,169 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-20T15:08:31,170 package, please make sure that 'xicommon.filters' is explicitly added 2025-11-20T15:08:31,170 to the `packages` configuration field. 2025-11-20T15:08:31,172 Alternatively, you can also rely on setuptools' discovery methods 2025-11-20T15:08:31,172 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-20T15:08:31,173 instead of `find_packages(...)`/`find:`). 2025-11-20T15:08:31,175 You can read more about "package discovery" on setuptools documentation page: 2025-11-20T15:08:31,186 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-20T15:08:31,190 If you don't want 'xicommon.filters' to be distributed and are 2025-11-20T15:08:31,194 already explicitly excluding 'xicommon.filters' via 2025-11-20T15:08:31,196 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-20T15:08:31,197 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-20T15:08:31,199 combination with a more fine grained `package-data` configuration. 2025-11-20T15:08:31,208 You can read more about "package data files" on setuptools documentation page: 2025-11-20T15:08:31,211 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-20T15:08:31,213 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-20T15:08:31,214 even if it does not contain any `.py` files. 2025-11-20T15:08:31,214 On the other hand, currently there is no concept of package data 2025-11-20T15:08:31,215 directory, all directories are treated like packages. 2025-11-20T15:08:31,221 ******************************************************************************** 2025-11-20T15:08:31,229 !! 2025-11-20T15:08:31,234 check.warn(importable) 2025-11-20T15:08:31,235 creating build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,235 copying xicommon/cython/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,237 copying xicommon/cython/argsort_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,238 copying xicommon/cython/argsort_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,241 copying xicommon/cython/compare_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,273 copying xicommon/cython/compare_byte_ranges.pxd -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,274 copying xicommon/cython/compare_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,277 copying xicommon/cython/copy_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,316 copying xicommon/cython/copy_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,318 copying xicommon/cython/db_uuid.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,328 copying xicommon/cython/db_uuid.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,330 copying xicommon/cython/fast_candidate_scores.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,375 copying xicommon/cython/fast_candidate_scores.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,378 copying xicommon/cython/fast_lookup.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,404 copying xicommon/cython/fast_lookup.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,407 copying xicommon/cython/fast_unique.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,437 copying xicommon/cython/fast_unique.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,440 copying xicommon/cython/fragmentation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,464 copying xicommon/cython/fragmentation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,467 copying xicommon/cython/fragmentation.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,469 copying xicommon/cython/inplace_reorder.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,489 copying xicommon/cython/inplace_reorder.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,491 copying xicommon/cython/isin_set.cpp -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,516 copying xicommon/cython/isin_set.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,518 copying xicommon/cython/isin_set.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,521 copying xicommon/cython/num_lexico_permutation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,552 copying xicommon/cython/num_lexico_permutation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,554 copying xicommon/cython/unique_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,577 copying xicommon/cython/unique_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,579 creating build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,580 copying xicommon/filters/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,583 copying xicommon/filters/base_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,585 copying xicommon/filters/charge_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,587 copying xicommon/filters/denoise_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,589 copying xicommon/filters/isotope_detector.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,592 copying xicommon/filters/isotope_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,594 copying xicommon/filters/loss_cluster_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-11-20T15:08:31,597 running build_ext 2025-11-20T15:08:31,604 building 'xicommon.cython.fast_lookup' extension 2025-11-20T15:08:31,605 creating build/temp.linux-armv7l-cpython-311/xicommon/cython 2025-11-20T15:08:31,607 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_lookup.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o 2025-11-20T15:08:49,858 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:08:50,042 building 'xicommon.cython.fast_unique' extension 2025-11-20T15:08:50,043 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_unique.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o 2025-11-20T15:09:08,789 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:09:08,966 building 'xicommon.cython.argsort_byte_ranges' extension 2025-11-20T15:09:08,967 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/argsort_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o 2025-11-20T15:09:25,137 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:09:25,263 building 'xicommon.cython.compare_byte_ranges' extension 2025-11-20T15:09:25,264 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/compare_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o 2025-11-20T15:09:42,184 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:09:42,320 building 'xicommon.cython.copy_byte_ranges' extension 2025-11-20T15:09:42,320 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/copy_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o 2025-11-20T15:09:58,532 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:09:58,698 building 'xicommon.cython.num_lexico_permutation' extension 2025-11-20T15:09:58,698 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/num_lexico_permutation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o 2025-11-20T15:10:15,115 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:10:15,244 building 'xicommon.cython.unique_byte_ranges' extension 2025-11-20T15:10:15,245 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/unique_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o 2025-11-20T15:10:32,503 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:10:32,629 building 'xicommon.cython.inplace_reorder' extension 2025-11-20T15:10:32,630 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/inplace_reorder.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o 2025-11-20T15:10:49,832 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:10:49,961 building 'xicommon.cython.fragmentation' extension 2025-11-20T15:10:49,962 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fragmentation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o 2025-11-20T15:11:13,629 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:11:13,899 building 'xicommon.cython.fast_candidate_scores' extension 2025-11-20T15:11:13,900 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_candidate_scores.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o 2025-11-20T15:11:30,503 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:11:30,630 building 'xicommon.cython.isin_set' extension 2025-11-20T15:11:30,632 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/isin_set.cpp -o build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -std=c++11 2025-11-20T15:12:07,256 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:12:07,615 building 'xicommon.cython.db_uuid' extension 2025-11-20T15:12:07,615 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-zrxv19ak/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/db_uuid.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o 2025-11-20T15:12:10,834 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so 2025-11-20T15:12:10,953 installing to build/bdist.linux-armv7l/wheel 2025-11-20T15:12:10,954 running install 2025-11-20T15:12:10,977 running install_lib 2025-11-20T15:12:10,986 creating build/bdist.linux-armv7l/wheel 2025-11-20T15:12:10,990 creating build/bdist.linux-armv7l/wheel/xicommon 2025-11-20T15:12:10,992 copying build/lib.linux-armv7l-cpython-311/xicommon/mock_context.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:10,995 copying build/lib.linux-armv7l-cpython-311/xicommon/fragment_peptides.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:10,998 copying build/lib.linux-armv7l-cpython-311/xicommon/simple_databases.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,000 copying build/lib.linux-armv7l-cpython-311/xicommon/config.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,004 copying build/lib.linux-armv7l-cpython-311/xicommon/const.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,007 creating build/bdist.linux-armv7l/wheel/xicommon/cython 2025-11-20T15:12:11,009 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pxd -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,011 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,014 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,019 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,022 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,048 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,067 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,089 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,091 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,112 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,115 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,129 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,145 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,147 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,162 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,183 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,185 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,200 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,236 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,257 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,304 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,306 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,308 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,311 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,345 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,348 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpp -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,385 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,414 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,434 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,437 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,460 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,525 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,572 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,597 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,599 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,622 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,640 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,643 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,651 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,653 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-11-20T15:12:11,655 copying build/lib.linux-armv7l-cpython-311/xicommon/context_base.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,657 copying build/lib.linux-armv7l-cpython-311/xicommon/spectra_reader.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,661 copying build/lib.linux-armv7l-cpython-311/xicommon/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,663 copying build/lib.linux-armv7l-cpython-311/xicommon/synthetic_spectra.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,665 copying build/lib.linux-armv7l-cpython-311/xicommon/helper.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,667 copying build/lib.linux-armv7l-cpython-311/xicommon/mass.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,670 copying build/lib.linux-armv7l-cpython-311/xicommon/output_format.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,671 copying build/lib.linux-armv7l-cpython-311/xicommon/modifications.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,674 copying build/lib.linux-armv7l-cpython-311/xicommon/xi_logging.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,677 copying build/lib.linux-armv7l-cpython-311/xicommon/dtypes.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,679 copying build/lib.linux-armv7l-cpython-311/xicommon/cache.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,681 copying build/lib.linux-armv7l-cpython-311/xicommon/utils.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,684 creating build/bdist.linux-armv7l/wheel/xicommon/filters 2025-11-20T15:12:11,685 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/denoise_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-11-20T15:12:11,687 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_detector.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-11-20T15:12:11,690 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-11-20T15:12:11,692 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/base_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-11-20T15:12:11,694 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/charge_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-11-20T15:12:11,696 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-11-20T15:12:11,698 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/loss_cluster_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-11-20T15:12:11,700 copying build/lib.linux-armv7l-cpython-311/xicommon/fragmentation.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-11-20T15:12:11,703 running install_egg_info 2025-11-20T15:12:11,710 Copying xicommon.egg-info to build/bdist.linux-armv7l/wheel/./xicommon-1.0.3rc1-py3.11.egg-info 2025-11-20T15:12:11,721 running install_scripts 2025-11-20T15:12:11,768 creating build/bdist.linux-armv7l/wheel/xicommon-1.0.3rc1.dist-info/WHEEL 2025-11-20T15:12:11,772 creating '/tmp/pip-wheel-4d7afj3w/.tmp-lxgacjik/xicommon-1.0.3rc1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-20T15:12:11,774 adding 'xicommon/__init__.py' 2025-11-20T15:12:11,776 adding 'xicommon/cache.py' 2025-11-20T15:12:11,781 adding 'xicommon/config.py' 2025-11-20T15:12:11,783 adding 'xicommon/const.py' 2025-11-20T15:12:11,784 adding 'xicommon/context_base.py' 2025-11-20T15:12:11,786 adding 'xicommon/dtypes.py' 2025-11-20T15:12:11,788 adding 'xicommon/fragment_peptides.py' 2025-11-20T15:12:11,791 adding 'xicommon/fragmentation.py' 2025-11-20T15:12:11,793 adding 'xicommon/helper.py' 2025-11-20T15:12:11,795 adding 'xicommon/mass.py' 2025-11-20T15:12:11,797 adding 'xicommon/mock_context.py' 2025-11-20T15:12:11,800 adding 'xicommon/modifications.py' 2025-11-20T15:12:11,801 adding 'xicommon/output_format.py' 2025-11-20T15:12:11,803 adding 'xicommon/simple_databases.py' 2025-11-20T15:12:11,807 adding 'xicommon/spectra_reader.py' 2025-11-20T15:12:11,809 adding 'xicommon/synthetic_spectra.py' 2025-11-20T15:12:11,811 adding 'xicommon/utils.py' 2025-11-20T15:12:11,813 adding 'xicommon/xi_logging.py' 2025-11-20T15:12:11,815 adding 'xicommon/cython/__init__.py' 2025-11-20T15:12:11,906 adding 'xicommon/cython/argsort_byte_ranges.c' 2025-11-20T15:12:12,096 adding 'xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:12,102 adding 'xicommon/cython/argsort_byte_ranges.pyx' 2025-11-20T15:12:12,196 adding 'xicommon/cython/compare_byte_ranges.c' 2025-11-20T15:12:12,391 adding 'xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:12,397 adding 'xicommon/cython/compare_byte_ranges.pxd' 2025-11-20T15:12:12,399 adding 'xicommon/cython/compare_byte_ranges.pyx' 2025-11-20T15:12:12,490 adding 'xicommon/cython/copy_byte_ranges.c' 2025-11-20T15:12:12,678 adding 'xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:12,684 adding 'xicommon/cython/copy_byte_ranges.pyx' 2025-11-20T15:12:12,714 adding 'xicommon/cython/db_uuid.c' 2025-11-20T15:12:12,755 adding 'xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:12,757 adding 'xicommon/cython/db_uuid.pyx' 2025-11-20T15:12:12,852 adding 'xicommon/cython/fast_candidate_scores.c' 2025-11-20T15:12:13,044 adding 'xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:13,050 adding 'xicommon/cython/fast_candidate_scores.pyx' 2025-11-20T15:12:13,146 adding 'xicommon/cython/fast_lookup.c' 2025-11-20T15:12:13,348 adding 'xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:13,355 adding 'xicommon/cython/fast_lookup.pyx' 2025-11-20T15:12:13,452 adding 'xicommon/cython/fast_unique.c' 2025-11-20T15:12:13,659 adding 'xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:13,666 adding 'xicommon/cython/fast_unique.pyx' 2025-11-20T15:12:13,775 adding 'xicommon/cython/fragmentation.c' 2025-11-20T15:12:14,037 adding 'xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:14,046 adding 'xicommon/cython/fragmentation.pyx' 2025-11-20T15:12:14,048 adding 'xicommon/cython/fragmentation.pyxbld' 2025-11-20T15:12:14,140 adding 'xicommon/cython/inplace_reorder.c' 2025-11-20T15:12:14,337 adding 'xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:14,343 adding 'xicommon/cython/inplace_reorder.pyx' 2025-11-20T15:12:14,452 adding 'xicommon/cython/isin_set.cpp' 2025-11-20T15:12:14,861 adding 'xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:14,879 adding 'xicommon/cython/isin_set.pyx' 2025-11-20T15:12:14,880 adding 'xicommon/cython/isin_set.pyxbld' 2025-11-20T15:12:14,972 adding 'xicommon/cython/num_lexico_permutation.c' 2025-11-20T15:12:15,163 adding 'xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:15,169 adding 'xicommon/cython/num_lexico_permutation.pyx' 2025-11-20T15:12:15,266 adding 'xicommon/cython/unique_byte_ranges.c' 2025-11-20T15:12:15,463 adding 'xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-11-20T15:12:15,469 adding 'xicommon/cython/unique_byte_ranges.pyx' 2025-11-20T15:12:15,471 adding 'xicommon/filters/__init__.py' 2025-11-20T15:12:15,473 adding 'xicommon/filters/base_filter.py' 2025-11-20T15:12:15,474 adding 'xicommon/filters/charge_reducer.py' 2025-11-20T15:12:15,475 adding 'xicommon/filters/denoise_filter.py' 2025-11-20T15:12:15,478 adding 'xicommon/filters/isotope_detector.py' 2025-11-20T15:12:15,480 adding 'xicommon/filters/isotope_reducer.py' 2025-11-20T15:12:15,481 adding 'xicommon/filters/loss_cluster_filter.py' 2025-11-20T15:12:15,488 adding 'xicommon-1.0.3rc1.dist-info/licenses/COPYING' 2025-11-20T15:12:15,490 adding 'xicommon-1.0.3rc1.dist-info/licenses/COPYING.LESSER' 2025-11-20T15:12:15,491 adding 'xicommon-1.0.3rc1.dist-info/METADATA' 2025-11-20T15:12:15,492 adding 'xicommon-1.0.3rc1.dist-info/WHEEL' 2025-11-20T15:12:15,493 adding 'xicommon-1.0.3rc1.dist-info/top_level.txt' 2025-11-20T15:12:15,495 adding 'xicommon-1.0.3rc1.dist-info/RECORD' 2025-11-20T15:12:15,560 removing build/bdist.linux-armv7l/wheel 2025-11-20T15:12:15,776 Building wheel for xicommon (pyproject.toml): finished with status 'done' 2025-11-20T15:12:15,911 Created wheel for xicommon: filename=xicommon-1.0.3rc1-cp311-cp311-linux_armv7l.whl size=6632911 sha256=761a5e877631f9c83264844fb826a70ba4c321b5e3162d82f6de9bd1b99b052e 2025-11-20T15:12:15,912 Stored in directory: /tmp/pip-ephem-wheel-cache-wax66nrm/wheels/23/5d/f2/092333d23af1774df45cd107b7336732a0047d29ecb0241687 2025-11-20T15:12:15,928 Successfully built xicommon 2025-11-20T15:12:16,185 Removed build tracker: '/tmp/pip-build-tracker-ia0ivutm'