2025-11-23T00:44:19,274 Created temporary directory: /tmp/pip-ephem-wheel-cache-x13rlj0m 2025-11-23T00:44:19,275 Created temporary directory: /tmp/pip-build-tracker-r7c7wq6j 2025-11-23T00:44:19,276 Initialized build tracking at /tmp/pip-build-tracker-r7c7wq6j 2025-11-23T00:44:19,277 Created build tracker: /tmp/pip-build-tracker-r7c7wq6j 2025-11-23T00:44:19,277 Entered build tracker: /tmp/pip-build-tracker-r7c7wq6j 2025-11-23T00:44:19,278 Created temporary directory: /tmp/pip-wheel-rbfcpc5l 2025-11-23T00:44:19,281 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-23T00:44:19,283 Created temporary directory: /tmp/pip-ephem-wheel-cache-2gpefw9l 2025-11-23T00:44:19,305 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-23T00:44:19,309 2 location(s) to search for versions of ecell4-base: 2025-11-23T00:44:19,309 * https://pypi.org/simple/ecell4-base/ 2025-11-23T00:44:19,309 * https://www.piwheels.org/simple/ecell4-base/ 2025-11-23T00:44:19,310 Fetching project page and analyzing links: https://pypi.org/simple/ecell4-base/ 2025-11-23T00:44:19,311 Getting page https://pypi.org/simple/ecell4-base/ 2025-11-23T00:44:19,312 Found index url https://pypi.org/simple 2025-11-23T00:44:19,542 Fetched page https://pypi.org/simple/ecell4-base/ as application/vnd.pypi.simple.v1+json 2025-11-23T00:44:19,559 Skipping link: No binaries permitted for ecell4-base: 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https://files.pythonhosted.org/packages/97/bc/778334984cfbc990704952b3d9f651cd3719001755bbe18339cd9db01f33/ecell4_base-2.1.0b1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,580 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/e4/8b/7cd5002f5a39c5e0bf236996ab79fb626d301ba48211a0d33ffebfa97e06/ecell4_base-2.1.0b1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,581 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/8f/39/a940f61bc23b183099b0674948e68ca25027a7f279d206e099f6d07e1b63/ecell4_base-2.1.0b1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,582 Skipping link: No binaries permitted for ecell4-base: 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https://files.pythonhosted.org/packages/67/f0/88df8af900c3c7a28f6f1d7ad3f37851d1643ebc9793bf8bf11f8ec0bb23/ecell4_base-2.1.1-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,592 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/83/b0/220b4310a92d10156a3ed45356f185c7f144e06e1ba6802831e5ea5b63ed/ecell4_base-2.1.1-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,592 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/d4/30/33ab4db4c22587dfc96fa372bfa70d5149e0c4971b275796268d3d12ded5/ecell4_base-2.1.1-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,593 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/70/d8/3fcd80276ec9636132a9f881b9152c3cbc56d7f111fb1173fd02f3a5028d/ecell4_base-2.1.1-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,593 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/6e/de/352908d680da0138129281074f524db26b1683d0475f4bc70e327675eff6/ecell4_base-2.1.1-cp314-cp314t-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,594 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/63/48/13b4e1e258fabfe6d0ccf43079d5d21844abade3839fb00963ae852350dc/ecell4_base-2.1.1-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,594 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/dc/85/a93840aa4170479b9c636e2ee4eb0846658daa2a457602f2f661a36b45a4/ecell4_base-2.1.1-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,595 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/79/e0/ca30c158f0f0e25847f99a60cacc58f07d92716b3c2767fc31572067fd16/ecell4_base-2.1.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,596 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/e8/58/b66b34a53994212d7506e2fa61cc864ba7e15f0aa993cad3a80e776abd4d/ecell4_base-2.1.1-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,596 Found link https://files.pythonhosted.org/packages/f0/ed/3e13be7cb527be85fdbe2579f20f97dd9cbf24bf844de09092f6839846d1/ecell4_base-2.1.1.tar.gz (from https://pypi.org/simple/ecell4-base/), version: 2.1.1 2025-11-23T00:44:19,597 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/39/a0/996e94fb8f959683d95fecd7ce2f78d912bdc6652d3cfa70089d8c643784/ecell4_base-2.1.2-cp310-cp310-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,598 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/b8/27/34b1ff9038b97235bd4889d162255c9afb2e8ee69ca9a18bf60f55ea230e/ecell4_base-2.1.2-cp310-cp310-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,599 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/14/73/458a5e2a30c5ad52eb05a040fa8988778bbd6fcb0ca5c1b68c9723159579/ecell4_base-2.1.2-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,599 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/3d/06/7010c26cc69b7d7183488b0804802215b3e152e752fecca0a7ef901dc955/ecell4_base-2.1.2-cp311-cp311-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,600 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/17/08/699255022f0271d8a5055958a2ec226ec38cef9fbf613cfbabdceccc29a1/ecell4_base-2.1.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,601 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/04/ef/16e2b980adcca7f8371158f936b97b17f8b27ce0b8c8c3bd5ea135791d5c/ecell4_base-2.1.2-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,601 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/fd/cb/566ff7b3afa1ef80ae08162a0208311909811bcc44a6e227f05736e3fddb/ecell4_base-2.1.2-cp312-cp312-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,602 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/d0/4f/3e56425d111c1247ca685c3cdd1bd823876f7b96559eb20d60da4a386d67/ecell4_base-2.1.2-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,602 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/04/67/ec7acc9d4f95e634571627e08154ef865231cbf390536ea3d84007d0380d/ecell4_base-2.1.2-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,603 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/95/24/7df8f86adc1d722cf75f8b2d4120c1bb3092d595d511b720dbf2060a5e93/ecell4_base-2.1.2-cp313-cp313-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,603 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/71/b2/3a3e693f73da7df5b3fe785be0e62e2ad5db6b0dfb3921b07f9a109edd58/ecell4_base-2.1.2-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,604 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/6a/c3/fb8093631e410c97cd8261c9025e2d1cdfad0655ca27e779340ec9820556/ecell4_base-2.1.2-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,604 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/20/25/3cc9e9fe29272b9f1f4d15243584c49607a7b3ffb2add3ae0062a22b6fe6/ecell4_base-2.1.2-cp314-cp314-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,605 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/7a/8e/a04dc14219daa78eb4b07bec35bd3f52cc4eab9c0f2ec0115691d9b2685a/ecell4_base-2.1.2-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,605 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/00/6a/561b59b0a08363461a08362a1d8083294f6b3376e35489e81e737280583e/ecell4_base-2.1.2-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,606 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/36/87/1a6a49cd5a5baed7c9a20ff1eb9dbab553f2bd7d89cf252dae68a94bc363/ecell4_base-2.1.2-cp314-cp314t-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,607 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/98/78/5679e0d4cdf4fd7d9d47c951ae3556f0d23c807c575dc540a6da585a56cd/ecell4_base-2.1.2-cp314-cp314t-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,607 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/ba/9c/be941764a654919208075aa352697347d60a7ffda966be2ecea4d8351b30/ecell4_base-2.1.2-cp314-cp314t-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,608 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/c5/1a/e836fa172c0408d592c3194a04dc59384144dca8b48a7ce7899046faa046/ecell4_base-2.1.2-cp38-cp38-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,609 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/66/9c/2cd1038c35a8f64d8cf572e7486a996368d9d1a17d47a9b538bc160ff8d3/ecell4_base-2.1.2-cp38-cp38-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,609 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/bf/1a/6399d42f4fc141a8f75c65ded97e8214465f7376123ebb9a832c2c79be3b/ecell4_base-2.1.2-cp38-cp38-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,610 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/f3/00/74e2d224fd49908215f64c9ca7d2fa5f2f1fc16a4948bcd497a7372fcaa9/ecell4_base-2.1.2-cp39-cp39-macosx_14_0_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,610 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/e1/cb/0a0fcef0f95ec0b714ad2a3eb7372276be2bdfdd0d532ae774a854373737/ecell4_base-2.1.2-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,611 Skipping link: No binaries permitted for ecell4-base: https://files.pythonhosted.org/packages/24/54/5618663c14ade29870ea27c087aa1fca756e0e7e7a07ad1ba31f59de34e6/ecell4_base-2.1.2-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/ecell4-base/) 2025-11-23T00:44:19,611 Found link https://files.pythonhosted.org/packages/c3/56/612e1b6f801474114150631cb9eb03ddc5185b880b5e3008f0e15e2c2b7c/ecell4_base-2.1.2.tar.gz (from https://pypi.org/simple/ecell4-base/), version: 2.1.2 2025-11-23T00:44:19,612 Fetching project page and analyzing links: https://www.piwheels.org/simple/ecell4-base/ 2025-11-23T00:44:19,613 Getting page https://www.piwheels.org/simple/ecell4-base/ 2025-11-23T00:44:19,614 Found index url https://www.piwheels.org/simple 2025-11-23T00:44:19,778 Fetched page https://www.piwheels.org/simple/ecell4-base/ as text/html 2025-11-23T00:44:19,779 Skipping link: not a file: https://www.piwheels.org/simple/ecell4-base/ 2025-11-23T00:44:19,780 Skipping link: not a file: https://pypi.org/simple/ecell4-base/ 2025-11-23T00:44:19,799 Given no hashes to check 1 links for project 'ecell4-base': discarding no candidates 2025-11-23T00:44:19,817 Collecting ecell4-base==2.1.2 2025-11-23T00:44:19,819 Created temporary directory: /tmp/pip-unpack-wpg055d2 2025-11-23T00:44:20,044 Downloading ecell4_base-2.1.2.tar.gz (445 kB) 2025-11-23T00:44:20,892 Added ecell4-base==2.1.2 from https://files.pythonhosted.org/packages/c3/56/612e1b6f801474114150631cb9eb03ddc5185b880b5e3008f0e15e2c2b7c/ecell4_base-2.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-r7c7wq6j' 2025-11-23T00:44:20,896 Created temporary directory: /tmp/pip-build-env-pg3l8zxd 2025-11-23T00:44:20,901 Installing build dependencies: started 2025-11-23T00:44:20,902 Running command pip subprocess to install build dependencies 2025-11-23T00:44:22,038 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-23T00:44:22,638 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-23T00:44:22,661 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-23T00:44:24,431 Collecting setuptools>=40.8.0 2025-11-23T00:44:24,527 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-23T00:44:24,798 Collecting wheel 2025-11-23T00:44:24,815 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-11-23T00:44:27,717 Installing collected packages: wheel, setuptools 2025-11-23T00:44:27,965 Creating /tmp/pip-build-env-pg3l8zxd/overlay/local/bin 2025-11-23T00:44:27,967 changing mode of /tmp/pip-build-env-pg3l8zxd/overlay/local/bin/wheel to 755 2025-11-23T00:44:31,669 Successfully installed setuptools-80.9.0 wheel-0.45.1 2025-11-23T00:44:31,940 Installing build dependencies: finished with status 'done' 2025-11-23T00:44:31,947 Getting requirements to build wheel: started 2025-11-23T00:44:31,948 Running command Getting requirements to build wheel 2025-11-23T00:44:32,483 :11: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-11-23T00:44:32,483 !! 2025-11-23T00:44:32,484 ******************************************************************************** 2025-11-23T00:44:32,485 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-11-23T00:44:32,486 This deprecation is overdue, please update your project and remove deprecated 2025-11-23T00:44:32,486 calls to avoid build errors in the future. 2025-11-23T00:44:32,487 ******************************************************************************** 2025-11-23T00:44:32,488 !! 2025-11-23T00:44:32,562 running egg_info 2025-11-23T00:44:32,572 writing ecell4_base.egg-info/PKG-INFO 2025-11-23T00:44:32,575 writing dependency_links to ecell4_base.egg-info/dependency_links.txt 2025-11-23T00:44:32,578 writing top-level names to ecell4_base.egg-info/top_level.txt 2025-11-23T00:44:32,593 reading manifest file 'ecell4_base.egg-info/SOURCES.txt' 2025-11-23T00:44:32,658 reading manifest template 'MANIFEST.in' 2025-11-23T00:44:32,828 warning: no files found matching '*.h' under directory 'pybind11/include' 2025-11-23T00:44:32,829 adding license file 'LICENSE' 2025-11-23T00:44:32,829 adding license file 'AUTHORS' 2025-11-23T00:44:32,845 writing manifest file 'ecell4_base.egg-info/SOURCES.txt' 2025-11-23T00:44:32,935 Getting requirements to build wheel: finished with status 'done' 2025-11-23T00:44:32,939 Created temporary directory: /tmp/pip-modern-metadata-tuskdhav 2025-11-23T00:44:32,942 Preparing metadata (pyproject.toml): started 2025-11-23T00:44:32,943 Running command Preparing metadata (pyproject.toml) 2025-11-23T00:44:33,457 :11: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-11-23T00:44:33,457 !! 2025-11-23T00:44:33,458 ******************************************************************************** 2025-11-23T00:44:33,458 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-11-23T00:44:33,460 This deprecation is overdue, please update your project and remove deprecated 2025-11-23T00:44:33,460 calls to avoid build errors in the future. 2025-11-23T00:44:33,461 ******************************************************************************** 2025-11-23T00:44:33,462 !! 2025-11-23T00:44:33,517 running dist_info 2025-11-23T00:44:33,532 creating /tmp/pip-modern-metadata-tuskdhav/ecell4_base.egg-info 2025-11-23T00:44:33,533 writing /tmp/pip-modern-metadata-tuskdhav/ecell4_base.egg-info/PKG-INFO 2025-11-23T00:44:33,537 writing dependency_links to /tmp/pip-modern-metadata-tuskdhav/ecell4_base.egg-info/dependency_links.txt 2025-11-23T00:44:33,539 writing top-level names to /tmp/pip-modern-metadata-tuskdhav/ecell4_base.egg-info/top_level.txt 2025-11-23T00:44:33,541 writing manifest file '/tmp/pip-modern-metadata-tuskdhav/ecell4_base.egg-info/SOURCES.txt' 2025-11-23T00:44:33,554 reading manifest file '/tmp/pip-modern-metadata-tuskdhav/ecell4_base.egg-info/SOURCES.txt' 2025-11-23T00:44:33,556 reading manifest template 'MANIFEST.in' 2025-11-23T00:44:33,708 warning: no files found matching '*.h' under directory 'pybind11/include' 2025-11-23T00:44:33,709 adding license file 'LICENSE' 2025-11-23T00:44:33,710 adding license file 'AUTHORS' 2025-11-23T00:44:33,721 writing manifest file '/tmp/pip-modern-metadata-tuskdhav/ecell4_base.egg-info/SOURCES.txt' 2025-11-23T00:44:33,723 creating '/tmp/pip-modern-metadata-tuskdhav/ecell4_base-2.1.2.dist-info' 2025-11-23T00:44:33,856 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-23T00:44:33,860 Source in /tmp/pip-wheel-rbfcpc5l/ecell4-base_3dedc526136c4b4494b4ee3b0924974e has version 2.1.2, which satisfies requirement ecell4-base==2.1.2 from https://files.pythonhosted.org/packages/c3/56/612e1b6f801474114150631cb9eb03ddc5185b880b5e3008f0e15e2c2b7c/ecell4_base-2.1.2.tar.gz 2025-11-23T00:44:33,861 Removed ecell4-base==2.1.2 from https://files.pythonhosted.org/packages/c3/56/612e1b6f801474114150631cb9eb03ddc5185b880b5e3008f0e15e2c2b7c/ecell4_base-2.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-r7c7wq6j' 2025-11-23T00:44:33,865 Created temporary directory: /tmp/pip-unpack-2ui77wxa 2025-11-23T00:44:33,866 Building wheels for collected packages: ecell4-base 2025-11-23T00:44:33,870 Created temporary directory: /tmp/pip-wheel-btf3qskt 2025-11-23T00:44:33,871 Destination directory: /tmp/pip-wheel-btf3qskt 2025-11-23T00:44:33,873 Building wheel for ecell4-base (pyproject.toml): started 2025-11-23T00:44:33,874 Running command Building wheel for ecell4-base (pyproject.toml) 2025-11-23T00:44:34,376 :11: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. 2025-11-23T00:44:34,377 !! 2025-11-23T00:44:34,378 ******************************************************************************** 2025-11-23T00:44:34,379 Please remove any references to `setuptools.command.test` in all supported versions of the affected package. 2025-11-23T00:44:34,380 This deprecation is overdue, please update your project and remove deprecated 2025-11-23T00:44:34,380 calls to avoid build errors in the future. 2025-11-23T00:44:34,381 ******************************************************************************** 2025-11-23T00:44:34,382 !! 2025-11-23T00:44:34,443 running bdist_wheel 2025-11-23T00:44:34,462 running build 2025-11-23T00:44:34,462 running build_ext 2025-11-23T00:44:34,816 -- The C compiler identification is GNU 12.2.0 2025-11-23T00:44:35,126 -- The CXX compiler identification is GNU 12.2.0 2025-11-23T00:44:35,178 -- Detecting C compiler ABI info 2025-11-23T00:44:35,595 -- Detecting C compiler ABI info - done 2025-11-23T00:44:35,636 -- Check for working C compiler: /usr/bin/cc - skipped 2025-11-23T00:44:35,638 -- Detecting C compile features 2025-11-23T00:44:35,640 -- Detecting C compile features - done 2025-11-23T00:44:35,659 -- Detecting CXX compiler ABI info 2025-11-23T00:44:36,107 -- Detecting CXX compiler ABI info - done 2025-11-23T00:44:36,159 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2025-11-23T00:44:36,161 -- Detecting CXX compile features 2025-11-23T00:44:36,163 -- Detecting CXX compile features - done 2025-11-23T00:44:36,261 -- Looking for HDF5 2025-11-23T00:44:39,659 -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so;/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5_cpp.so;/usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found suitable version "1.10.8", minimum required is "1.10") found components: C CXX HL 2025-11-23T00:44:39,661 -- HDF5 was found ... 1.10.8 2025-11-23T00:44:40,144 -- Could NOT find Boost (missing: Boost_INCLUDE_DIR) 2025-11-23T00:44:40,145 CMake Error at CMakeLists.txt:45 (message): 2025-11-23T00:44:40,146 ecell4 requires Boost C++ Library. If you have already installed it, try 2025-11-23T00:44:40,147 `-DBOOST_ROOT=/path/to/boost` 2025-11-23T00:44:40,148 -- Configuring incomplete, errors occurred! 2025-11-23T00:44:40,149 See also "/tmp/pip-wheel-rbfcpc5l/ecell4-base_3dedc526136c4b4494b4ee3b0924974e/build/temp.linux-armv7l-cpython-311/CMakeFiles/CMakeOutput.log". 2025-11-23T00:44:40,163 Traceback (most recent call last): 2025-11-23T00:44:40,164 File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in 2025-11-23T00:44:40,165 main() 2025-11-23T00:44:40,165 File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main 2025-11-23T00:44:40,166 json_out['return_val'] = hook(**hook_input['kwargs']) 2025-11-23T00:44:40,166 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,167 File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel 2025-11-23T00:44:40,167 return _build_backend().build_wheel(wheel_directory, config_settings, 2025-11-23T00:44:40,168 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,168 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 435, in build_wheel 2025-11-23T00:44:40,169 return _build(['bdist_wheel', '--dist-info-dir', str(metadata_directory)]) 2025-11-23T00:44:40,169 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,170 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 423, in _build 2025-11-23T00:44:40,170 return self._build_with_temp_dir( 2025-11-23T00:44:40,171 ^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,172 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 404, in _build_with_temp_dir 2025-11-23T00:44:40,172 self.run_setup() 2025-11-23T00:44:40,173 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 512, in run_setup 2025-11-23T00:44:40,173 super().run_setup(setup_script=setup_script) 2025-11-23T00:44:40,174 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 317, in run_setup 2025-11-23T00:44:40,175 exec(code, locals()) 2025-11-23T00:44:40,175 File "", line 107, in 2025-11-23T00:44:40,176 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 115, in setup 2025-11-23T00:44:40,176 return distutils.core.setup(**attrs) 2025-11-23T00:44:40,177 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,177 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-11-23T00:44:40,178 return run_commands(dist) 2025-11-23T00:44:40,179 ^^^^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,180 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-11-23T00:44:40,180 dist.run_commands() 2025-11-23T00:44:40,181 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-11-23T00:44:40,181 self.run_command(cmd) 2025-11-23T00:44:40,182 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-11-23T00:44:40,183 super().run_command(command) 2025-11-23T00:44:40,184 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-11-23T00:44:40,185 cmd_obj.run() 2025-11-23T00:44:40,185 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/command/bdist_wheel.py", line 370, in run 2025-11-23T00:44:40,187 self.run_command("build") 2025-11-23T00:44:40,187 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-11-23T00:44:40,188 self.distribution.run_command(command) 2025-11-23T00:44:40,189 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-11-23T00:44:40,189 super().run_command(command) 2025-11-23T00:44:40,190 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-11-23T00:44:40,191 cmd_obj.run() 2025-11-23T00:44:40,192 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/command/build.py", line 135, in run 2025-11-23T00:44:40,192 self.run_command(cmd_name) 2025-11-23T00:44:40,193 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py", line 357, in run_command 2025-11-23T00:44:40,194 self.distribution.run_command(command) 2025-11-23T00:44:40,194 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-11-23T00:44:40,195 super().run_command(command) 2025-11-23T00:44:40,196 File "/tmp/pip-build-env-pg3l8zxd/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-11-23T00:44:40,197 cmd_obj.run() 2025-11-23T00:44:40,198 File "", line 49, in run 2025-11-23T00:44:40,199 File "", line 83, in build_extension 2025-11-23T00:44:40,200 File "/usr/lib/python3.11/subprocess.py", line 413, in check_call 2025-11-23T00:44:40,201 raise CalledProcessError(retcode, cmd) 2025-11-23T00:44:40,202 subprocess.CalledProcessError: Command '['cmake', '/tmp/pip-wheel-rbfcpc5l/ecell4-base_3dedc526136c4b4494b4ee3b0924974e', '-DCMAKE_LIBRARY_OUTPUT_DIRECTORY=/tmp/pip-wheel-rbfcpc5l/ecell4-base_3dedc526136c4b4494b4ee3b0924974e/build/lib.linux-armv7l-cpython-311', '-DPYTHON_EXECUTABLE=/usr/bin/python3', '-DCMAKE_BUILD_TYPE=Release']' returned non-zero exit status 1. 2025-11-23T00:44:40,275 ERROR: [present-rich] Building wheel for ecell4-base (pyproject.toml) exited with 1 2025-11-23T00:44:40,289 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmp7k9o7tod[/] 2025-11-23T00:44:40,289 [bold magenta]cwd[/]: /tmp/pip-wheel-rbfcpc5l/ecell4-base_3dedc526136c4b4494b4ee3b0924974e 2025-11-23T00:44:40,290 Building wheel for ecell4-base (pyproject.toml): finished with status 'error' 2025-11-23T00:44:40,292 ERROR: Failed building wheel for ecell4-base 2025-11-23T00:44:40,295 Failed to build ecell4-base 2025-11-23T00:44:40,296 ERROR: Failed to build one or more wheels 2025-11-23T00:44:40,297 Exception information: 2025-11-23T00:44:40,297 Traceback (most recent call last): 2025-11-23T00:44:40,297 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2025-11-23T00:44:40,297 status = run_func(*args) 2025-11-23T00:44:40,297 ^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,297 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2025-11-23T00:44:40,297 return func(self, options, args) 2025-11-23T00:44:40,297 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-11-23T00:44:40,297 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2025-11-23T00:44:40,297 raise CommandError("Failed to build one or more wheels") 2025-11-23T00:44:40,297 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-11-23T00:44:40,301 Removed build tracker: '/tmp/pip-build-tracker-r7c7wq6j'