2025-11-24T12:26:17,696 Created temporary directory: /tmp/pip-ephem-wheel-cache-_50z63a8
2025-11-24T12:26:17,698 Created temporary directory: /tmp/pip-build-tracker-x7_tnm5z
2025-11-24T12:26:17,698 Initialized build tracking at /tmp/pip-build-tracker-x7_tnm5z
2025-11-24T12:26:17,699 Created build tracker: /tmp/pip-build-tracker-x7_tnm5z
2025-11-24T12:26:17,699 Entered build tracker: /tmp/pip-build-tracker-x7_tnm5z
2025-11-24T12:26:17,700 Created temporary directory: /tmp/pip-wheel-919saulw
2025-11-24T12:26:17,703 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-24T12:26:17,705 Created temporary directory: /tmp/pip-ephem-wheel-cache-osqkbh4z
2025-11-24T12:26:17,730 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-24T12:26:17,733 2 location(s) to search for versions of bioemu:
2025-11-24T12:26:17,733 * https://pypi.org/simple/bioemu/
2025-11-24T12:26:17,733 * https://www.piwheels.org/simple/bioemu/
2025-11-24T12:26:17,734 Fetching project page and analyzing links: https://pypi.org/simple/bioemu/
2025-11-24T12:26:17,735 Getting page https://pypi.org/simple/bioemu/
2025-11-24T12:26:17,736 Found index url https://pypi.org/simple
2025-11-24T12:26:17,952 Fetched page https://pypi.org/simple/bioemu/ as application/vnd.pypi.simple.v1+json
2025-11-24T12:26:17,960   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/7f/73/385b4d0f12526f07e057d9376aac3cb9e1330645a8f19f152b66449673c2/bioemu-0.1.0-py3-none-any.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,961   Found link https://files.pythonhosted.org/packages/f4/17/c9b9eed09b6e1d2aadd97218e86396a94d11258e693e238cf7955cc60731/bioemu-0.1.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.0
2025-11-24T12:26:17,962   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/1a/0f/aefef09b86846f3f1cd1b4fa80303f56a368fcba8e4ad1d64cd68b29fd30/bioemu-0.1.2-py3-none-any.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,963   Found link https://files.pythonhosted.org/packages/82/44/14618cc8b0a6e1c960c0c13d5dec330f7971096558fc43d6b21007173cfa/bioemu-0.1.2.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.2
2025-11-24T12:26:17,964   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/17/75/32569c710c9e16d898da69948b405253de8fd75196215f98990bbabb01f0/bioemu-0.1.3-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,965   Found link https://files.pythonhosted.org/packages/fd/4b/e95da2528523db786ed87e9bd090e1441f503926652919c46b898a9aeb49/bioemu-0.1.3.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.3
2025-11-24T12:26:17,966   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/06/7b/23c1629b9497c71202d2cd1fed491b86b0d6e5e9d60cad3ee5fc21814832/bioemu-0.1.4-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,967   Found link https://files.pythonhosted.org/packages/fc/1f/7e9869fcf1bcb4047d283613879e6ca9d3af43c3ee5b9f6613a3920b8c13/bioemu-0.1.4.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.4
2025-11-24T12:26:17,968   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/b3/ea/2b1ad9ca3235573f8567e8f9cbf22cf2410ecb846cc8b98dd297763b7d73/bioemu-0.1.5a1-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,969   Found link https://files.pythonhosted.org/packages/c1/89/ff381aac4a74e70ef5177a00abd82a420620144c7999627ff79f150ab70e/bioemu-0.1.5a1.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a1
2025-11-24T12:26:17,969   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/49/c1/01704b3d4b4f35aef31a3822cbc552455d652bc201106ebebc63bd7048a4/bioemu-0.1.5a2-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,970   Found link https://files.pythonhosted.org/packages/d3/6d/10dd1e1a87407286d2c24b308e4e6a7e0c86957ead398a312cef48049a6d/bioemu-0.1.5a2.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a2
2025-11-24T12:26:17,971   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/4a/5c/48400b7d17dee46f12e8cad7eac08ff97f20282c6383e17076ee2df15321/bioemu-0.1.5a3-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,972   Found link https://files.pythonhosted.org/packages/2a/b8/b6440f4e40d8fbcde038d64508b2a619627ef4fb340a03d80f56bc2027ff/bioemu-0.1.5a3.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a3
2025-11-24T12:26:17,973   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/c0/fa/cc9f2e4b1f56f9dd9daa684ddafed96124fa92dea97781e6f62e4514db5f/bioemu-0.1.5a4-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,973   Found link https://files.pythonhosted.org/packages/a3/d7/ab25c136d813ee90c56bec1a3a329b9fc18c2e5a7307f003d5e6a24e9f1c/bioemu-0.1.5a4.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a4
2025-11-24T12:26:17,974   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/65/1b/2918674f25fbfa623f21680cb080245cd879cfe7633eb0a44e24c0ab021c/bioemu-0.1.5-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,975   Found link https://files.pythonhosted.org/packages/4c/fb/e3a9a6bacfefa12eafa9d5a4c7e7757905f57960daa0c174d8c1aac7a985/bioemu-0.1.5.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5
2025-11-24T12:26:17,975   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/99/fe/d58cb9d216a0c73b7747aa98788585efe09d021cf7f60e91cb324aebdb89/bioemu-0.1.6-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,976   Found link https://files.pythonhosted.org/packages/36/94/6df2a9864432487aa1a69c7778018106820ce6eccc142c4237101fafb1d5/bioemu-0.1.6.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.6
2025-11-24T12:26:17,977   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/be/83/235999d0a926b965f30374c2206c75b371a46d93eeb67ec76016526380da/bioemu-0.1.7-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,978   Found link https://files.pythonhosted.org/packages/27/00/c769ded90b77de421ecc8c70567a418edb4a60ab3f6e30eb7e16c3ee6b65/bioemu-0.1.7.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.7
2025-11-24T12:26:17,979   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/bd/d5/02d58f59f3c75dbcbbb761727fb16f48504266c13e94390add230e9b92b7/bioemu-0.1.8-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,980   Found link https://files.pythonhosted.org/packages/81/8a/a2b37bcb17eff8f908f6c21d0b096949e5176b221ab42f37f9d0eade8c8b/bioemu-0.1.8.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.8
2025-11-24T12:26:17,980   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/0f/37/d7d918c6704886f5e37fe3dca74e7ba783e6c48117a635c046d7aee56694/bioemu-0.1.9-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,981   Found link https://files.pythonhosted.org/packages/3a/8d/8cc828cf22272e3176279c88b5bf4fb98f15ffa914d5e362de969b792f53/bioemu-0.1.9.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.9
2025-11-24T12:26:17,982   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/c4/29/42248a4517def4edbace87379eff5c791872ba3125c095e6b661fbff5740/bioemu-0.1.10-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,983   Found link https://files.pythonhosted.org/packages/4d/d9/35f5a97b4698ed11668a17f3488a1913d263870ded595c504363b195ac63/bioemu-0.1.10.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.10
2025-11-24T12:26:17,984   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/81/1a/44fe3508ed114ccd4b112851968e2d9755feda4d6573cd6dbfa65d44a6ec/bioemu-0.1.11-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,984   Found link https://files.pythonhosted.org/packages/ff/63/15a6848831dc7d9b8e9b6a6a4d44e46705c9febef42f5ae413111afb8094/bioemu-0.1.11.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.11
2025-11-24T12:26:17,985   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/fd/60/d61399cac78141e169a4d75c08ac8f090e2ec5abed933d05fe3d9f2d7095/bioemu-0.1.12-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,986   Found link https://files.pythonhosted.org/packages/03/66/5f94b734aad586e42f71b274235b2d14ae5cca7b758b19b989e0cc181c23/bioemu-0.1.12.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.12
2025-11-24T12:26:17,986   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/9a/84/17fd9b85bf8138eeda2a127c12838f92619a0af7179f7dc100ed50b1391d/bioemu-1.0.0-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,987   Found link https://files.pythonhosted.org/packages/be/f9/a1c9a3035bc232c6722778b0048344259b4d71e483df067242a35b188b06/bioemu-1.0.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 1.0.0
2025-11-24T12:26:17,988   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/c6/28/9dfa63cc5c863948660bc7ffebc723382ad32f29d7de02f5e0384c119b31/bioemu-1.1.0-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,989   Found link https://files.pythonhosted.org/packages/8c/6d/5a408d12591e72bb55f8098ba1706d38ea4b1bb1481d9e45339621e499de/bioemu-1.1.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 1.1.0
2025-11-24T12:26:17,990   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/d9/e2/b1a5a51d6f50e46d795327ca1bc4b50904773797f9671f58210eaa4c89c2/bioemu-1.2.0-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:17,991   Found link https://files.pythonhosted.org/packages/b0/59/08bd143435bfcd14ae550cb9ae11e145008aa38714edd27a508d8bb190c1/bioemu-1.2.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 1.2.0
2025-11-24T12:26:17,992 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioemu/
2025-11-24T12:26:17,992 Getting page https://www.piwheels.org/simple/bioemu/
2025-11-24T12:26:17,994 Found index url https://www.piwheels.org/simple
2025-11-24T12:26:18,153 Fetched page https://www.piwheels.org/simple/bioemu/ as text/html
2025-11-24T12:26:18,159   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-1.1.0-py3-none-any.whl#sha256=75744876272afb5a8885d0b45423bf30499b645bb09d36d5d80850549b2c9d9c (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,160   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-1.0.0-py3-none-any.whl#sha256=38b41fab511a421c4d3a0febed879084e26034de5e85bf1b59739c7345f346d3 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,161   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.12-py3-none-any.whl#sha256=8a4bd96d5d2866de49e398a510cac2c768bf07e473b0feb589de554fc27b3364 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,161   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.11-py3-none-any.whl#sha256=f53242d59c84afd2d6eb33e4adb738e7c00192f06b173edffc4c0287b031a1e6 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,161   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.10-py3-none-any.whl#sha256=9e42e2ed0317a847061dbd6eab88a8e824cf82c10e2a85f67ab9d002490bffec (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,162   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.9-py3-none-any.whl#sha256=925708fd62034f50b72526b4a7f362e3d747a37b993d5227c5f43c129bc2880a (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,162   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.8-py3-none-any.whl#sha256=1a5c8419a83006ff2e57d3b081d524541ba31c867c8a18c1c9f8f57b96d03ed7 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,163   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.7-py3-none-any.whl#sha256=162a1f92e21e32cfe9559b1e102b64c6f6cb84e3cc557d9a79929187a31566de (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,163   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.6-py3-none-any.whl#sha256=c8a62d5b735af043f3bf89441e54a67f725bd35a8b340cfad6f398763e742882 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,164   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5-py3-none-any.whl#sha256=d6e1b191c4b6eae60158934c8c971a61efc989a6d7ddb753c2b1a2d9172cf208 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,164   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a4-py3-none-any.whl#sha256=fbc5cf4851bf2d573fed4e22e01b7fe04e46d37e0b2fb96b7ef4bae9d9596c7a (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,165   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a3-py3-none-any.whl#sha256=383a6f325cc8971c9a399b6dd807e8eadfb003318af3b8dda58101641d176d19 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,166   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a2-py3-none-any.whl#sha256=e442174b8d3fe55aacc2356208f9545cff7645d6ac6590b96259b548109b97fe (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,166   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a1-py3-none-any.whl#sha256=fa952b43870c044d6d6167e0fff92054b3cf35d9d50101d2fe9ab9ef4a55b782 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,167   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.4-py3-none-any.whl#sha256=39875d82680a02aa85280b79a9fafc5713a5b9790e3e150e838e2100d65b0167 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,167   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.3-py3-none-any.whl#sha256=900370e9b0451d6b13b524ccb75572688734872cff7eb60e1c3b0547d5c2bdd2 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,168   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.2-py3-none-any.whl#sha256=b0357e8b86035218f66b130d2f576504db808c6308e06d2e504c78eb046dce69 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,169   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.0-py3-none-any.whl#sha256=517a09bb6b9a9dd8902a43cd043d1e23b210361cd8cbebd2a8160e1b224a0fdb (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2025-11-24T12:26:18,169 Skipping link: not a file: https://www.piwheels.org/simple/bioemu/
2025-11-24T12:26:18,170 Skipping link: not a file: https://pypi.org/simple/bioemu/
2025-11-24T12:26:18,190 Given no hashes to check 1 links for project 'bioemu': discarding no candidates
2025-11-24T12:26:18,208 Collecting bioemu==1.2.0
2025-11-24T12:26:18,210   Created temporary directory: /tmp/pip-unpack-3cn4ye93
2025-11-24T12:26:18,426   Downloading bioemu-1.2.0.tar.gz (105 kB)
2025-11-24T12:26:18,608   Added bioemu==1.2.0 from https://files.pythonhosted.org/packages/b0/59/08bd143435bfcd14ae550cb9ae11e145008aa38714edd27a508d8bb190c1/bioemu-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-x7_tnm5z'
2025-11-24T12:26:18,614   Created temporary directory: /tmp/pip-build-env-i1c_n0cc
2025-11-24T12:26:18,618   Installing build dependencies: started
2025-11-24T12:26:18,619   Running command pip subprocess to install build dependencies
2025-11-24T12:26:19,771   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-11-24T12:26:20,405   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-11-24T12:26:20,427   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-11-24T12:26:22,146   Collecting setuptools
2025-11-24T12:26:22,234     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-11-24T12:26:22,505   Collecting wheel
2025-11-24T12:26:22,521     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-11-24T12:26:25,385   Installing collected packages: wheel, setuptools
2025-11-24T12:26:25,618     Creating /tmp/pip-build-env-i1c_n0cc/overlay/local/bin
2025-11-24T12:26:25,620     changing mode of /tmp/pip-build-env-i1c_n0cc/overlay/local/bin/wheel to 755
2025-11-24T12:26:29,090   Successfully installed setuptools-80.9.0 wheel-0.45.1
2025-11-24T12:26:29,363   Installing build dependencies: finished with status 'done'
2025-11-24T12:26:29,369   Getting requirements to build wheel: started
2025-11-24T12:26:29,370   Running command Getting requirements to build wheel
2025-11-24T12:26:30,054   running egg_info
2025-11-24T12:26:30,060   writing src/bioemu.egg-info/PKG-INFO
2025-11-24T12:26:30,066   writing dependency_links to src/bioemu.egg-info/dependency_links.txt
2025-11-24T12:26:30,069   writing requirements to src/bioemu.egg-info/requires.txt
2025-11-24T12:26:30,071   writing top-level names to src/bioemu.egg-info/top_level.txt
2025-11-24T12:26:30,111   reading manifest file 'src/bioemu.egg-info/SOURCES.txt'
2025-11-24T12:26:30,115   reading manifest template 'MANIFEST.in'
2025-11-24T12:26:30,118   warning: no files found matching 'src/bioemu/config/**/*.yml'
2025-11-24T12:26:30,118   adding license file 'LICENSE'
2025-11-24T12:26:30,119   adding license file 'NOTICE.md'
2025-11-24T12:26:30,123   writing manifest file 'src/bioemu.egg-info/SOURCES.txt'
2025-11-24T12:26:30,220   Getting requirements to build wheel: finished with status 'done'
2025-11-24T12:26:30,223   Created temporary directory: /tmp/pip-modern-metadata-447o3ggv
2025-11-24T12:26:30,225   Preparing metadata (pyproject.toml): started
2025-11-24T12:26:30,227   Running command Preparing metadata (pyproject.toml)
2025-11-24T12:26:30,886   running dist_info
2025-11-24T12:26:30,898   creating /tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info
2025-11-24T12:26:30,899   writing /tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info/PKG-INFO
2025-11-24T12:26:30,904   writing dependency_links to /tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info/dependency_links.txt
2025-11-24T12:26:30,907   writing requirements to /tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info/requires.txt
2025-11-24T12:26:30,909   writing top-level names to /tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info/top_level.txt
2025-11-24T12:26:30,910   writing manifest file '/tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info/SOURCES.txt'
2025-11-24T12:26:30,945   reading manifest file '/tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info/SOURCES.txt'
2025-11-24T12:26:30,947   reading manifest template 'MANIFEST.in'
2025-11-24T12:26:30,949   warning: no files found matching 'src/bioemu/config/**/*.yml'
2025-11-24T12:26:30,950   adding license file 'LICENSE'
2025-11-24T12:26:30,950   adding license file 'NOTICE.md'
2025-11-24T12:26:30,953   writing manifest file '/tmp/pip-modern-metadata-447o3ggv/bioemu.egg-info/SOURCES.txt'
2025-11-24T12:26:30,954   creating '/tmp/pip-modern-metadata-447o3ggv/bioemu-1.2.0.dist-info'
2025-11-24T12:26:31,078   Preparing metadata (pyproject.toml): finished with status 'done'
2025-11-24T12:26:31,082   Source in /tmp/pip-wheel-919saulw/bioemu_704e8481c1384938998497b998b1637b has version 1.2.0, which satisfies requirement bioemu==1.2.0 from https://files.pythonhosted.org/packages/b0/59/08bd143435bfcd14ae550cb9ae11e145008aa38714edd27a508d8bb190c1/bioemu-1.2.0.tar.gz
2025-11-24T12:26:31,083   Removed bioemu==1.2.0 from https://files.pythonhosted.org/packages/b0/59/08bd143435bfcd14ae550cb9ae11e145008aa38714edd27a508d8bb190c1/bioemu-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-x7_tnm5z'
2025-11-24T12:26:31,089 Created temporary directory: /tmp/pip-unpack-a4ng3pu1
2025-11-24T12:26:31,090 Building wheels for collected packages: bioemu
2025-11-24T12:26:31,094   Created temporary directory: /tmp/pip-wheel-6ls7xlkc
2025-11-24T12:26:31,095   Destination directory: /tmp/pip-wheel-6ls7xlkc
2025-11-24T12:26:31,097   Building wheel for bioemu (pyproject.toml): started
2025-11-24T12:26:31,098   Running command Building wheel for bioemu (pyproject.toml)
2025-11-24T12:26:31,721   running bdist_wheel
2025-11-24T12:26:31,742   running build
2025-11-24T12:26:31,742   running build_py
2025-11-24T12:26:31,749   creating build/lib/bioemu
2025-11-24T12:26:31,751   copying src/bioemu/md_utils.py -> build/lib/bioemu
2025-11-24T12:26:31,754   copying src/bioemu/seq_io.py -> build/lib/bioemu
2025-11-24T12:26:31,756   copying src/bioemu/so3_sde.py -> build/lib/bioemu
2025-11-24T12:26:31,759   copying src/bioemu/get_embeds.py -> build/lib/bioemu
2025-11-24T12:26:31,761   copying src/bioemu/convert_chemgraph.py -> build/lib/bioemu
2025-11-24T12:26:31,764   copying src/bioemu/chemgraph.py -> build/lib/bioemu
2025-11-24T12:26:31,766   copying src/bioemu/run_hpacker.py -> build/lib/bioemu
2025-11-24T12:26:31,768   copying src/bioemu/model_utils.py -> build/lib/bioemu
2025-11-24T12:26:31,770   copying src/bioemu/utils.py -> build/lib/bioemu
2025-11-24T12:26:31,772   copying src/bioemu/models.py -> build/lib/bioemu
2025-11-24T12:26:31,774   copying src/bioemu/sidechain_relax.py -> build/lib/bioemu
2025-11-24T12:26:31,776   copying src/bioemu/sample.py -> build/lib/bioemu
2025-11-24T12:26:31,779   copying src/bioemu/shortcuts.py -> build/lib/bioemu
2025-11-24T12:26:31,780   copying src/bioemu/__init__.py -> build/lib/bioemu
2025-11-24T12:26:31,782   copying src/bioemu/denoiser.py -> build/lib/bioemu
2025-11-24T12:26:31,784   copying src/bioemu/structure_module.py -> build/lib/bioemu
2025-11-24T12:26:31,787   copying src/bioemu/sde_lib.py -> build/lib/bioemu
2025-11-24T12:26:31,790   creating build/lib/bioemu/hpacker_setup
2025-11-24T12:26:31,791   copying src/bioemu/hpacker_setup/__init__.py -> build/lib/bioemu/hpacker_setup
2025-11-24T12:26:31,792   copying src/bioemu/hpacker_setup/setup_hpacker.py -> build/lib/bioemu/hpacker_setup
2025-11-24T12:26:31,795   creating build/lib/bioemu/colabfold_setup
2025-11-24T12:26:31,795   copying src/bioemu/colabfold_setup/__init__.py -> build/lib/bioemu/colabfold_setup
2025-11-24T12:26:31,797   creating build/lib/bioemu/training
2025-11-24T12:26:31,798   copying src/bioemu/training/loss.py -> build/lib/bioemu/training
2025-11-24T12:26:31,800   copying src/bioemu/training/foldedness.py -> build/lib/bioemu/training
2025-11-24T12:26:31,804   creating build/lib/bioemu/openfold/np
2025-11-24T12:26:31,805   copying src/bioemu/openfold/np/residue_constants.py -> build/lib/bioemu/openfold/np
2025-11-24T12:26:31,808   copying src/bioemu/openfold/np/protein.py -> build/lib/bioemu/openfold/np
2025-11-24T12:26:31,811   creating build/lib/bioemu/openfold/utils
2025-11-24T12:26:31,812   copying src/bioemu/openfold/utils/rigid_utils.py -> build/lib/bioemu/openfold/utils
2025-11-24T12:26:31,814   running egg_info
2025-11-24T12:26:31,826   writing src/bioemu.egg-info/PKG-INFO
2025-11-24T12:26:31,831   writing dependency_links to src/bioemu.egg-info/dependency_links.txt
2025-11-24T12:26:31,833   writing requirements to src/bioemu.egg-info/requires.txt
2025-11-24T12:26:31,834   writing top-level names to src/bioemu.egg-info/top_level.txt
2025-11-24T12:26:31,858   reading manifest file 'src/bioemu.egg-info/SOURCES.txt'
2025-11-24T12:26:31,862   reading manifest template 'MANIFEST.in'
2025-11-24T12:26:31,865   warning: no files found matching 'src/bioemu/config/**/*.yml'
2025-11-24T12:26:31,865   adding license file 'LICENSE'
2025-11-24T12:26:31,866   adding license file 'NOTICE.md'
2025-11-24T12:26:31,869   writing manifest file 'src/bioemu.egg-info/SOURCES.txt'
2025-11-24T12:26:31,882   copying src/bioemu/hpacker_setup/setup_sidechain_relax.sh -> build/lib/bioemu/hpacker_setup
2025-11-24T12:26:31,884   copying src/bioemu/colabfold_setup/batch.patch -> build/lib/bioemu/colabfold_setup
2025-11-24T12:26:31,886   copying src/bioemu/colabfold_setup/modules.patch -> build/lib/bioemu/colabfold_setup
2025-11-24T12:26:31,889   copying src/bioemu/colabfold_setup/setup.sh -> build/lib/bioemu/colabfold_setup
2025-11-24T12:26:31,891   creating build/lib/bioemu/config/denoiser
2025-11-24T12:26:31,892   copying src/bioemu/config/denoiser/dpm.yaml -> build/lib/bioemu/config/denoiser
2025-11-24T12:26:31,894   copying src/bioemu/config/denoiser/heun.yaml -> build/lib/bioemu/config/denoiser
2025-11-24T12:26:31,910   installing to build/bdist.linux-armv7l/wheel
2025-11-24T12:26:31,910   running install
2025-11-24T12:26:31,933   running install_lib
2025-11-24T12:26:31,939   creating build/bdist.linux-armv7l/wheel
2025-11-24T12:26:31,941   creating build/bdist.linux-armv7l/wheel/bioemu
2025-11-24T12:26:31,943   copying build/lib/bioemu/md_utils.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,945   copying build/lib/bioemu/seq_io.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,947   copying build/lib/bioemu/so3_sde.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,951   creating build/bdist.linux-armv7l/wheel/bioemu/config
2025-11-24T12:26:31,952   creating build/bdist.linux-armv7l/wheel/bioemu/config/denoiser
2025-11-24T12:26:31,953   copying build/lib/bioemu/config/denoiser/heun.yaml -> build/bdist.linux-armv7l/wheel/./bioemu/config/denoiser
2025-11-24T12:26:31,955   copying build/lib/bioemu/config/denoiser/dpm.yaml -> build/bdist.linux-armv7l/wheel/./bioemu/config/denoiser
2025-11-24T12:26:31,957   copying build/lib/bioemu/get_embeds.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,959   copying build/lib/bioemu/convert_chemgraph.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,962   copying build/lib/bioemu/chemgraph.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,964   creating build/bdist.linux-armv7l/wheel/bioemu/hpacker_setup
2025-11-24T12:26:31,965   copying build/lib/bioemu/hpacker_setup/__init__.py -> build/bdist.linux-armv7l/wheel/./bioemu/hpacker_setup
2025-11-24T12:26:31,966   copying build/lib/bioemu/hpacker_setup/setup_sidechain_relax.sh -> build/bdist.linux-armv7l/wheel/./bioemu/hpacker_setup
2025-11-24T12:26:31,968   copying build/lib/bioemu/hpacker_setup/setup_hpacker.py -> build/bdist.linux-armv7l/wheel/./bioemu/hpacker_setup
2025-11-24T12:26:31,970   creating build/bdist.linux-armv7l/wheel/bioemu/colabfold_setup
2025-11-24T12:26:31,971   copying build/lib/bioemu/colabfold_setup/batch.patch -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_setup
2025-11-24T12:26:31,973   copying build/lib/bioemu/colabfold_setup/modules.patch -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_setup
2025-11-24T12:26:31,974   copying build/lib/bioemu/colabfold_setup/setup.sh -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_setup
2025-11-24T12:26:31,976   copying build/lib/bioemu/colabfold_setup/__init__.py -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_setup
2025-11-24T12:26:31,978   copying build/lib/bioemu/run_hpacker.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,979   copying build/lib/bioemu/model_utils.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,981   copying build/lib/bioemu/utils.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,983   copying build/lib/bioemu/models.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,985   copying build/lib/bioemu/sidechain_relax.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,987   copying build/lib/bioemu/sample.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,990   copying build/lib/bioemu/shortcuts.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,991   copying build/lib/bioemu/__init__.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,993   copying build/lib/bioemu/denoiser.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:31,996   creating build/bdist.linux-armv7l/wheel/bioemu/training
2025-11-24T12:26:31,997   copying build/lib/bioemu/training/loss.py -> build/bdist.linux-armv7l/wheel/./bioemu/training
2025-11-24T12:26:32,000   copying build/lib/bioemu/training/foldedness.py -> build/bdist.linux-armv7l/wheel/./bioemu/training
2025-11-24T12:26:32,002   copying build/lib/bioemu/structure_module.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:32,005   creating build/bdist.linux-armv7l/wheel/bioemu/openfold
2025-11-24T12:26:32,006   creating build/bdist.linux-armv7l/wheel/bioemu/openfold/np
2025-11-24T12:26:32,007   copying build/lib/bioemu/openfold/np/residue_constants.py -> build/bdist.linux-armv7l/wheel/./bioemu/openfold/np
2025-11-24T12:26:32,010   copying build/lib/bioemu/openfold/np/protein.py -> build/bdist.linux-armv7l/wheel/./bioemu/openfold/np
2025-11-24T12:26:32,013   creating build/bdist.linux-armv7l/wheel/bioemu/openfold/utils
2025-11-24T12:26:32,014   copying build/lib/bioemu/openfold/utils/rigid_utils.py -> build/bdist.linux-armv7l/wheel/./bioemu/openfold/utils
2025-11-24T12:26:32,017   copying build/lib/bioemu/sde_lib.py -> build/bdist.linux-armv7l/wheel/./bioemu
2025-11-24T12:26:32,019   running install_egg_info
2025-11-24T12:26:32,025   Copying src/bioemu.egg-info to build/bdist.linux-armv7l/wheel/./bioemu-1.2.0-py3.11.egg-info
2025-11-24T12:26:32,034   running install_scripts
2025-11-24T12:26:32,046   creating build/bdist.linux-armv7l/wheel/bioemu-1.2.0.dist-info/WHEEL
2025-11-24T12:26:32,049   creating '/tmp/pip-wheel-6ls7xlkc/.tmp-niqbd222/bioemu-1.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-11-24T12:26:32,051   adding 'bioemu/__init__.py'
2025-11-24T12:26:32,053   adding 'bioemu/chemgraph.py'
2025-11-24T12:26:32,056   adding 'bioemu/convert_chemgraph.py'
2025-11-24T12:26:32,058   adding 'bioemu/denoiser.py'
2025-11-24T12:26:32,060   adding 'bioemu/get_embeds.py'
2025-11-24T12:26:32,062   adding 'bioemu/md_utils.py'
2025-11-24T12:26:32,064   adding 'bioemu/model_utils.py'
2025-11-24T12:26:32,066   adding 'bioemu/models.py'
2025-11-24T12:26:32,067   adding 'bioemu/run_hpacker.py'
2025-11-24T12:26:32,069   adding 'bioemu/sample.py'
2025-11-24T12:26:32,071   adding 'bioemu/sde_lib.py'
2025-11-24T12:26:32,072   adding 'bioemu/seq_io.py'
2025-11-24T12:26:32,073   adding 'bioemu/shortcuts.py'
2025-11-24T12:26:32,075   adding 'bioemu/sidechain_relax.py'
2025-11-24T12:26:32,084   adding 'bioemu/so3_sde.py'
2025-11-24T12:26:32,086   adding 'bioemu/structure_module.py'
2025-11-24T12:26:32,088   adding 'bioemu/utils.py'
2025-11-24T12:26:32,089   adding 'bioemu/colabfold_setup/__init__.py'
2025-11-24T12:26:32,090   adding 'bioemu/colabfold_setup/batch.patch'
2025-11-24T12:26:32,092   adding 'bioemu/colabfold_setup/modules.patch'
2025-11-24T12:26:32,093   adding 'bioemu/colabfold_setup/setup.sh'
2025-11-24T12:26:32,095   adding 'bioemu/config/denoiser/dpm.yaml'
2025-11-24T12:26:32,096   adding 'bioemu/config/denoiser/heun.yaml'
2025-11-24T12:26:32,097   adding 'bioemu/hpacker_setup/__init__.py'
2025-11-24T12:26:32,098   adding 'bioemu/hpacker_setup/setup_hpacker.py'
2025-11-24T12:26:32,100   adding 'bioemu/hpacker_setup/setup_sidechain_relax.sh'
2025-11-24T12:26:32,103   adding 'bioemu/openfold/np/protein.py'
2025-11-24T12:26:32,108   adding 'bioemu/openfold/np/residue_constants.py'
2025-11-24T12:26:32,113   adding 'bioemu/openfold/utils/rigid_utils.py'
2025-11-24T12:26:32,115   adding 'bioemu/training/foldedness.py'
2025-11-24T12:26:32,117   adding 'bioemu/training/loss.py'
2025-11-24T12:26:32,119   adding 'bioemu-1.2.0.dist-info/licenses/LICENSE'
2025-11-24T12:26:32,122   adding 'bioemu-1.2.0.dist-info/licenses/NOTICE.md'
2025-11-24T12:26:32,124   adding 'bioemu-1.2.0.dist-info/METADATA'
2025-11-24T12:26:32,125   adding 'bioemu-1.2.0.dist-info/WHEEL'
2025-11-24T12:26:32,125   adding 'bioemu-1.2.0.dist-info/top_level.txt'
2025-11-24T12:26:32,127   adding 'bioemu-1.2.0.dist-info/RECORD'
2025-11-24T12:26:32,129   removing build/bdist.linux-armv7l/wheel
2025-11-24T12:26:32,239   Building wheel for bioemu (pyproject.toml): finished with status 'done'
2025-11-24T12:26:32,246   Created wheel for bioemu: filename=bioemu-1.2.0-py3-none-any.whl size=99710 sha256=5648f752a6e4072005e06649e9b6a1a2004ac37c462f4d8083485279cef2492d
2025-11-24T12:26:32,247   Stored in directory: /tmp/pip-ephem-wheel-cache-osqkbh4z/wheels/7c/05/61/6826a44a0d262b59cab69c67b5526ca01fba3a8491edba90e9
2025-11-24T12:26:32,259 Successfully built bioemu
2025-11-24T12:26:32,265 Removed build tracker: '/tmp/pip-build-tracker-x7_tnm5z'