2025-11-25T08:32:18,032 Created temporary directory: /tmp/pip-ephem-wheel-cache-gf_d77ch 2025-11-25T08:32:18,034 Created temporary directory: /tmp/pip-build-tracker-1mmszs15 2025-11-25T08:32:18,035 Initialized build tracking at /tmp/pip-build-tracker-1mmszs15 2025-11-25T08:32:18,036 Created build tracker: /tmp/pip-build-tracker-1mmszs15 2025-11-25T08:32:18,036 Entered build tracker: /tmp/pip-build-tracker-1mmszs15 2025-11-25T08:32:18,037 Created temporary directory: /tmp/pip-wheel-yccnmrr3 2025-11-25T08:32:18,040 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-25T08:32:18,042 Created temporary directory: /tmp/pip-ephem-wheel-cache-lwg1zl9z 2025-11-25T08:32:18,064 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-25T08:32:18,067 2 location(s) to search for versions of starfish: 2025-11-25T08:32:18,067 * https://pypi.org/simple/starfish/ 2025-11-25T08:32:18,067 * https://www.piwheels.org/simple/starfish/ 2025-11-25T08:32:18,068 Fetching project page and analyzing links: https://pypi.org/simple/starfish/ 2025-11-25T08:32:18,069 Getting page https://pypi.org/simple/starfish/ 2025-11-25T08:32:18,070 Found index url https://pypi.org/simple 2025-11-25T08:32:18,286 Fetched page https://pypi.org/simple/starfish/ as application/vnd.pypi.simple.v1+json 2025-11-25T08:32:18,297 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/ca/cb/a87eaed3aadd4749c556b05f37a30a0b262793bf382d543fe18c84728daa/starfish-0.0.0a0-py3-none-any.whl (from https://pypi.org/simple/starfish/) 2025-11-25T08:32:18,298 Found link https://files.pythonhosted.org/packages/31/70/6a03a0c66bd29cd3dc7c45f9461454789c06b71d8724a49612317fc1b786/starfish-0.0.0a0.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.0a0 2025-11-25T08:32:18,298 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/19/bd/49494f9d81b209b2e6c0596ea3012823dc2a617149ba1e26ff1a47649a81/starfish-0.0.0a1-py3-none-any.whl (from https://pypi.org/simple/starfish/) 2025-11-25T08:32:18,299 Found link https://files.pythonhosted.org/packages/d9/ef/51b0999ff891471226353b6bd9be16c01acdb8fef09f9674dce714639e1c/starfish-0.0.0a1.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.0a1 2025-11-25T08:32:18,300 Found link https://files.pythonhosted.org/packages/31/cf/91118662326541c4b9f03fcc8be13827b0d68c47ff043560627de6709d22/starfish-0.0.2.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.2 2025-11-25T08:32:18,301 Found link https://files.pythonhosted.org/packages/ce/cd/a7f804272ac806409bd722be560bea46eb3a62534aa67b363c9beac4747c/starfish-0.0.3.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.3 2025-11-25T08:32:18,301 Found link https://files.pythonhosted.org/packages/ad/65/e1d95d420fc114563ed8baeccf173d7313ca5c3c2c905d53e9a152819481/starfish-0.0.4.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.4 2025-11-25T08:32:18,302 Found link https://files.pythonhosted.org/packages/35/38/1971faa6f669e34ef2d9af3911b85799bedde67545538e2380b696232a26/starfish-0.0.5.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.5 2025-11-25T08:32:18,303 Found link 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https://files.pythonhosted.org/packages/a7/64/0561019d53b8e75c8169f1ff9d2bf77f86a21eeae3be7e43f2858b449fa1/starfish-0.0.19.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.19 2025-11-25T08:32:18,312 Found link https://files.pythonhosted.org/packages/93/0f/b41f6d4269fccdbda7990ba460ba3a07d042b4d77a3ed0f647be7a3cdfd6/starfish-0.0.20.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.20 2025-11-25T08:32:18,313 Found link https://files.pythonhosted.org/packages/ff/41/b2044e30be97456cbdaba80bf6399141a8f964594264893b21b0082039ab/starfish-0.0.21.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.21 2025-11-25T08:32:18,314 Found link https://files.pythonhosted.org/packages/79/c0/5f26d8e2cd4d7f1179e45a903092a4011951c59668229731353aeb1f20e6/starfish-0.0.22.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.22 2025-11-25T08:32:18,315 Found link https://files.pythonhosted.org/packages/47/ac/9b9123ed4525a16a898acc3deabc78ec14794bbc5275d0a136b11164455c/starfish-0.0.23.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.23 2025-11-25T08:32:18,315 Found link https://files.pythonhosted.org/packages/07/e6/92ce138e938b7971c441c5ca1e1936f3ba32ca739ddf7e19ffed6497b612/starfish-0.0.24.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.24 2025-11-25T08:32:18,316 Found link https://files.pythonhosted.org/packages/6b/0f/392da7855e1e133cdb3394fc3261550e93933c7ebdb78044b2fa9c759f07/starfish-0.0.25.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.25 2025-11-25T08:32:18,317 Found link https://files.pythonhosted.org/packages/e7/b6/9c8705a84994a7d91067d8a535c5d0a93254868ee2066a2ef1c2dcd0f2b8/starfish-0.0.26.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.26 2025-11-25T08:32:18,317 Found link https://files.pythonhosted.org/packages/dd/e9/f1e261eb6f5f8c81407d04d969a45d869c91fab6095f57b0bf8b5ea0f513/starfish-0.0.27.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.27 2025-11-25T08:32:18,318 Found link https://files.pythonhosted.org/packages/09/8d/6572ebc910ca56d134e896c9f0340d88669360b9712cd62fee7fe259b457/starfish-0.0.28.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.28 2025-11-25T08:32:18,319 Found link https://files.pythonhosted.org/packages/09/9d/b8d45abbbf92f28d9a63fcd5da8e622b19523ed43542dd5d62d266481add/starfish-0.0.30.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.30 2025-11-25T08:32:18,320 Found link https://files.pythonhosted.org/packages/7f/84/b1a6a919e181fc38b767c0e7a7961845b2b514d7585e2800665d182daae0/starfish-0.0.32.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.32 2025-11-25T08:32:18,320 Found link https://files.pythonhosted.org/packages/68/a7/8cac11c11305a43c95f9a76710c3f76a9354729cbc648c9cef02714f9cff/starfish-0.0.33.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.33 2025-11-25T08:32:18,321 Found link https://files.pythonhosted.org/packages/29/37/c92cf43801c20099b17eb0c7578d2bcdbf8cd3d0e811ca62614f6eb990f4/starfish-0.0.34.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.34 2025-11-25T08:32:18,321 Found link https://files.pythonhosted.org/packages/59/04/4312e1a9f79c12b59be63599494e158f050121ecf96c372cea5246cca4ae/starfish-0.0.35.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.35 2025-11-25T08:32:18,322 Found link https://files.pythonhosted.org/packages/18/6d/b19751970a223242fe77389a4af41775d43f5f9361be3909661ec185d733/starfish-0.0.36.tar.gz (from https://pypi.org/simple/starfish/), version: 0.0.36 2025-11-25T08:32:18,323 Found link https://files.pythonhosted.org/packages/15/09/c02ba3942c673a052bdce8680e28a84799bf03b2cbf2ba92baf511417118/starfish-0.1.0.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.0 2025-11-25T08:32:18,323 Found link https://files.pythonhosted.org/packages/9a/c3/f43d9e538dbad2b03845a6158356740c0534f7c311a98a1fdb752949f501/starfish-0.1.1.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.1 2025-11-25T08:32:18,324 Found link https://files.pythonhosted.org/packages/09/55/a22d0a20987938cd39b3095f573665eb1b385c449475d941d89b40466fdb/starfish-0.1.2.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.2 2025-11-25T08:32:18,324 Found link https://files.pythonhosted.org/packages/16/58/766eedc12f26200e5f12a2d63a4222d49c82ae729d8c98d2f0cbd6909db2/starfish-0.1.3.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.3 2025-11-25T08:32:18,325 Found link https://files.pythonhosted.org/packages/a9/60/7a30d30b8d5f99046ecd85e89a371188eba4a6a05688fdcaf1babd6cab3f/starfish-0.1.4.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.4 2025-11-25T08:32:18,326 Found link https://files.pythonhosted.org/packages/e6/a1/845173304e51ae574aa6ca75b2a7c8bfe9d644957a91860b732df0127abe/starfish-0.1.5.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.5 2025-11-25T08:32:18,327 Found link https://files.pythonhosted.org/packages/3f/0f/31dab0c67a30f16be496a44335532a3d4021ef3728a4ac1f7a6237812523/starfish-0.1.6.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.6 2025-11-25T08:32:18,327 Found link https://files.pythonhosted.org/packages/b9/f7/3854f84f4087487c2e862285ad17a5bf4ef230c5d0234c8ca8462a056210/starfish-0.1.7.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.7 2025-11-25T08:32:18,328 Found link https://files.pythonhosted.org/packages/14/66/0ca64718ba29483c84166aa1af364ae66dac28447a24c6f302d0e964838c/starfish-0.1.8.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.8 2025-11-25T08:32:18,329 Found link https://files.pythonhosted.org/packages/56/9a/2de4f8a28a639433a1131f20246d1f04a6111356de7341388824ad8b61dc/starfish-0.1.9.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.9 2025-11-25T08:32:18,330 Found link https://files.pythonhosted.org/packages/be/9b/4215abcd20509c27b2885c6736e4640581d00b36e6e3ac178a53138c8f2e/starfish-0.1.10.tar.gz (from https://pypi.org/simple/starfish/), version: 0.1.10 2025-11-25T08:32:18,330 Found link https://files.pythonhosted.org/packages/cf/b6/6a001e31cf9f40bec8c22fb62a3eacaae1687ca6acafecdcc22a5c1ad2d4/starfish-0.2.0.tar.gz (from https://pypi.org/simple/starfish/), version: 0.2.0 2025-11-25T08:32:18,331 Found link https://files.pythonhosted.org/packages/51/57/3dc1c66cbb1723ab764b292408886a396fe8a17faaf5aa43ba80f7d67c80/starfish-0.2.1.tar.gz (from https://pypi.org/simple/starfish/), version: 0.2.1 2025-11-25T08:32:18,332 Found link https://files.pythonhosted.org/packages/22/47/757222c68a59be787b43a472f2174633247705308b328a01487bb8a66dbd/starfish-0.2.2.tar.gz (from https://pypi.org/simple/starfish/), version: 0.2.2 2025-11-25T08:32:18,333 Found link https://files.pythonhosted.org/packages/16/b8/7a8240c6d52bf613bdab14a1768bd11a7d2c608927609800e041a690ab16/starfish-0.3.0.tar.gz (from https://pypi.org/simple/starfish/) (requires-python:<3.12,>=3.9), version: 0.3.0 2025-11-25T08:32:18,334 Found link https://files.pythonhosted.org/packages/9b/27/ee25c489b3cc51b4a60b404286169f099a483de844c83f78a33e6596dbf9/starfish-0.3.1.tar.gz (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9), version: 0.3.1 2025-11-25T08:32:18,335 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/de/1f/afa748d771389cddb65505a143b99d96b3a7a1ff68ab46f989b5d47e0996/starfish-0.3.2-py3-none-any.whl (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9) 2025-11-25T08:32:18,335 Found link https://files.pythonhosted.org/packages/b3/b6/317f10d74118e4d6563b8079f688bee1f90f27bf63974e7f784111f6c42b/starfish-0.3.2.tar.gz (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9), version: 0.3.2 2025-11-25T08:32:18,336 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/de/fc/d0370eb9a0c70edc85942383538d106d4b46f209673ee63437c1dc3d587b/starfish-0.3.3-py3-none-any.whl (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9) 2025-11-25T08:32:18,337 Found link https://files.pythonhosted.org/packages/de/af/4b7dddf2d6cac928f3fe5da80c15c31491bad209717e821ad0e883b14f7f/starfish-0.3.3.tar.gz (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9), version: 0.3.3 2025-11-25T08:32:18,338 Skipping link: No binaries permitted for starfish: https://files.pythonhosted.org/packages/64/b9/4778d376c32d51da4e5251fb2e5cd4320d85f4a321785d8d943de90123dc/starfish-0.3.4-py3-none-any.whl (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9) 2025-11-25T08:32:18,339 Found link https://files.pythonhosted.org/packages/f7/6b/41efba89fdf4b196c46cedc2dfe024a8c0f4c1a08e6746843db5701b47a1/starfish-0.3.4.tar.gz (from https://pypi.org/simple/starfish/) (requires-python:<3.13,>=3.9), version: 0.3.4 2025-11-25T08:32:18,340 Fetching project page and analyzing links: https://www.piwheels.org/simple/starfish/ 2025-11-25T08:32:18,341 Getting page https://www.piwheels.org/simple/starfish/ 2025-11-25T08:32:18,342 Found index url https://www.piwheels.org/simple 2025-11-25T08:32:18,511 Fetched page https://www.piwheels.org/simple/starfish/ as text/html 2025-11-25T08:32:18,525 Skipping link: No binaries permitted for starfish: https://archive1.piwheels.org/simple/starfish/starfish-0.3.3-py3-none-any.whl#sha256=9a230889fa4cff8fbcea07b80f9dd6f92f2d3c0e6e1b17ffd032c109458933ff (from https://www.piwheels.org/simple/starfish/) (requires-python:<3.13,>=3.9) 2025-11-25T08:32:18,526 Skipping link: No binaries permitted for starfish: https://archive1.piwheels.org/simple/starfish/starfish-0.3.2-py3-none-any.whl#sha256=058023cc5beec782e4a87dd3b753d596da4289fdb60b02bb77584a5a3f5dd740 (from https://www.piwheels.org/simple/starfish/) (requires-python:<3.13,>=3.9) 2025-11-25T08:32:18,527 Skipping link: No binaries permitted for starfish: https://archive1.piwheels.org/simple/starfish/starfish-0.3.1-py3-none-any.whl#sha256=b2383a8e6b39ba52ccd100522459c0a566869586da2bdb063080ffdfe9058554 (from https://www.piwheels.org/simple/starfish/) (requires-python:>=3.9, <3.13) 2025-11-25T08:32:18,527 Skipping link: No binaries permitted for starfish: https://archive1.piwheels.org/simple/starfish/starfish-0.3.0-py3-none-any.whl#sha256=1ac4dc92bda40d503e8baad71786a0775446e90c082c9cfc77e7d53fa31244a0 (from https://www.piwheels.org/simple/starfish/) (requires-python:>=3.9, <3.12) 2025-11-25T08:32:18,528 Skipping link: No binaries permitted for starfish: https://archive1.piwheels.org/simple/starfish/starfish-0.2.2-py3-none-any.whl#sha256=06fad46018f315fe97054842425c3278fd3b873d429cadbc961fcea46ec4e76c (from https://www.piwheels.org/simple/starfish/) 2025-11-25T08:32:18,529 Skipping link: No binaries permitted for starfish: https://archive1.piwheels.org/simple/starfish/starfish-0.2.1-py3-none-any.whl#sha256=23a1b9f858903e905ef3004e2dda996e56fb9fcd90ae24f877011a8313667aeb (from https://www.piwheels.org/simple/starfish/) 2025-11-25T08:32:18,530 Skipping link: No binaries permitted for starfish: 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https://www.piwheels.org/simple/starfish/) 2025-11-25T08:32:18,555 Skipping link: not a file: https://www.piwheels.org/simple/starfish/ 2025-11-25T08:32:18,555 Skipping link: not a file: https://pypi.org/simple/starfish/ 2025-11-25T08:32:18,580 Given no hashes to check 1 links for project 'starfish': discarding no candidates 2025-11-25T08:32:18,599 Collecting starfish==0.3.4 2025-11-25T08:32:18,601 Created temporary directory: /tmp/pip-unpack-orsv2ibe 2025-11-25T08:32:18,815 Downloading starfish-0.3.4.tar.gz (283 kB) 2025-11-25T08:32:19,555 Added starfish==0.3.4 from https://files.pythonhosted.org/packages/f7/6b/41efba89fdf4b196c46cedc2dfe024a8c0f4c1a08e6746843db5701b47a1/starfish-0.3.4.tar.gz to build tracker '/tmp/pip-build-tracker-1mmszs15' 2025-11-25T08:32:19,561 Created temporary directory: /tmp/pip-build-env-1tn8n3h_ 2025-11-25T08:32:19,565 Installing build dependencies: started 2025-11-25T08:32:19,566 Running command pip subprocess to install build dependencies 2025-11-25T08:32:20,773 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-25T08:32:21,390 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-25T08:32:21,416 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-25T08:32:23,136 Collecting setuptools>=66.1.0 2025-11-25T08:32:23,245 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-25T08:32:23,403 Collecting versioneer 2025-11-25T08:32:23,420 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2025-11-25T08:32:26,336 Installing collected packages: versioneer, setuptools 2025-11-25T08:32:26,370 Creating /tmp/pip-build-env-1tn8n3h_/overlay/local/bin 2025-11-25T08:32:26,373 changing mode of /tmp/pip-build-env-1tn8n3h_/overlay/local/bin/versioneer to 755 2025-11-25T08:32:31,044 Successfully installed setuptools-80.9.0 versioneer-0.29 2025-11-25T08:32:31,315 Installing build dependencies: finished with status 'done' 2025-11-25T08:32:31,322 Getting requirements to build wheel: started 2025-11-25T08:32:31,323 Running command Getting requirements to build wheel 2025-11-25T08:32:32,091 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-25T08:32:32,091 !! 2025-11-25T08:32:32,092 ******************************************************************************** 2025-11-25T08:32:32,093 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-25T08:32:32,094 License :: OSI Approved :: MIT License 2025-11-25T08:32:32,095 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-25T08:32:32,095 ******************************************************************************** 2025-11-25T08:32:32,096 !! 2025-11-25T08:32:32,096 dist._finalize_license_expression() 2025-11-25T08:32:32,097 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-25T08:32:32,097 !! 2025-11-25T08:32:32,098 ******************************************************************************** 2025-11-25T08:32:32,099 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-25T08:32:32,100 License :: OSI Approved :: MIT License 2025-11-25T08:32:32,101 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-25T08:32:32,101 ******************************************************************************** 2025-11-25T08:32:32,102 !! 2025-11-25T08:32:32,102 self._finalize_license_expression() 2025-11-25T08:32:32,103 running egg_info 2025-11-25T08:32:32,104 writing starfish.egg-info/PKG-INFO 2025-11-25T08:32:32,109 writing dependency_links to starfish.egg-info/dependency_links.txt 2025-11-25T08:32:32,111 writing entry points to starfish.egg-info/entry_points.txt 2025-11-25T08:32:32,114 writing requirements to starfish.egg-info/requires.txt 2025-11-25T08:32:32,115 writing top-level names to starfish.egg-info/top_level.txt 2025-11-25T08:32:32,207 reading manifest file 'starfish.egg-info/SOURCES.txt' 2025-11-25T08:32:32,232 reading manifest template 'MANIFEST.in' 2025-11-25T08:32:32,253 adding license file 'LICENSE' 2025-11-25T08:32:32,270 writing manifest file 'starfish.egg-info/SOURCES.txt' 2025-11-25T08:32:32,377 Getting requirements to build wheel: finished with status 'done' 2025-11-25T08:32:32,381 Created temporary directory: /tmp/pip-modern-metadata-76maemny 2025-11-25T08:32:32,383 Preparing metadata (pyproject.toml): started 2025-11-25T08:32:32,384 Running command Preparing metadata (pyproject.toml) 2025-11-25T08:32:33,083 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-25T08:32:33,084 !! 2025-11-25T08:32:33,085 ******************************************************************************** 2025-11-25T08:32:33,085 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-25T08:32:33,086 License :: OSI Approved :: MIT License 2025-11-25T08:32:33,088 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-25T08:32:33,088 ******************************************************************************** 2025-11-25T08:32:33,089 !! 2025-11-25T08:32:33,090 dist._finalize_license_expression() 2025-11-25T08:32:33,090 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-25T08:32:33,091 !! 2025-11-25T08:32:33,092 ******************************************************************************** 2025-11-25T08:32:33,093 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-25T08:32:33,094 License :: OSI Approved :: MIT License 2025-11-25T08:32:33,095 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-25T08:32:33,095 ******************************************************************************** 2025-11-25T08:32:33,097 !! 2025-11-25T08:32:33,097 self._finalize_license_expression() 2025-11-25T08:32:33,098 running dist_info 2025-11-25T08:32:33,106 creating /tmp/pip-modern-metadata-76maemny/starfish.egg-info 2025-11-25T08:32:33,107 writing /tmp/pip-modern-metadata-76maemny/starfish.egg-info/PKG-INFO 2025-11-25T08:32:33,112 writing dependency_links to /tmp/pip-modern-metadata-76maemny/starfish.egg-info/dependency_links.txt 2025-11-25T08:32:33,114 writing entry points to /tmp/pip-modern-metadata-76maemny/starfish.egg-info/entry_points.txt 2025-11-25T08:32:33,116 writing requirements to /tmp/pip-modern-metadata-76maemny/starfish.egg-info/requires.txt 2025-11-25T08:32:33,117 writing top-level names to /tmp/pip-modern-metadata-76maemny/starfish.egg-info/top_level.txt 2025-11-25T08:32:33,119 writing manifest file '/tmp/pip-modern-metadata-76maemny/starfish.egg-info/SOURCES.txt' 2025-11-25T08:32:33,196 reading manifest file '/tmp/pip-modern-metadata-76maemny/starfish.egg-info/SOURCES.txt' 2025-11-25T08:32:33,198 reading manifest template 'MANIFEST.in' 2025-11-25T08:32:33,216 adding license file 'LICENSE' 2025-11-25T08:32:33,229 writing manifest file '/tmp/pip-modern-metadata-76maemny/starfish.egg-info/SOURCES.txt' 2025-11-25T08:32:33,236 creating '/tmp/pip-modern-metadata-76maemny/starfish-0.3.4.dist-info' 2025-11-25T08:32:33,369 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-25T08:32:33,373 Source in /tmp/pip-wheel-yccnmrr3/starfish_f1dbb7501aca4736b5f6aff5b4e0bf14 has version 0.3.4, which satisfies requirement starfish==0.3.4 from https://files.pythonhosted.org/packages/f7/6b/41efba89fdf4b196c46cedc2dfe024a8c0f4c1a08e6746843db5701b47a1/starfish-0.3.4.tar.gz 2025-11-25T08:32:33,374 Removed starfish==0.3.4 from https://files.pythonhosted.org/packages/f7/6b/41efba89fdf4b196c46cedc2dfe024a8c0f4c1a08e6746843db5701b47a1/starfish-0.3.4.tar.gz from build tracker '/tmp/pip-build-tracker-1mmszs15' 2025-11-25T08:32:33,381 Created temporary directory: /tmp/pip-unpack-g8azcw_1 2025-11-25T08:32:33,381 Building wheels for collected packages: starfish 2025-11-25T08:32:33,385 Created temporary directory: /tmp/pip-wheel-obpsxr6x 2025-11-25T08:32:33,386 Destination directory: /tmp/pip-wheel-obpsxr6x 2025-11-25T08:32:33,388 Building wheel for starfish (pyproject.toml): started 2025-11-25T08:32:33,389 Running command Building wheel for starfish (pyproject.toml) 2025-11-25T08:32:34,066 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-25T08:32:34,066 !! 2025-11-25T08:32:34,068 ******************************************************************************** 2025-11-25T08:32:34,068 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-25T08:32:34,069 License :: OSI Approved :: MIT License 2025-11-25T08:32:34,070 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-25T08:32:34,071 ******************************************************************************** 2025-11-25T08:32:34,072 !! 2025-11-25T08:32:34,073 dist._finalize_license_expression() 2025-11-25T08:32:34,073 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-25T08:32:34,074 !! 2025-11-25T08:32:34,075 ******************************************************************************** 2025-11-25T08:32:34,076 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-25T08:32:34,077 License :: OSI Approved :: MIT License 2025-11-25T08:32:34,079 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-25T08:32:34,079 ******************************************************************************** 2025-11-25T08:32:34,080 !! 2025-11-25T08:32:34,081 self._finalize_license_expression() 2025-11-25T08:32:34,081 running bdist_wheel 2025-11-25T08:32:34,091 running build 2025-11-25T08:32:34,092 running build_py 2025-11-25T08:32:34,098 creating build/lib/starfish 2025-11-25T08:32:34,100 copying starfish/image.py -> build/lib/starfish 2025-11-25T08:32:34,102 copying starfish/test.py -> build/lib/starfish 2025-11-25T08:32:34,103 copying starfish/data.py -> build/lib/starfish 2025-11-25T08:32:34,106 copying starfish/__init__.py -> build/lib/starfish 2025-11-25T08:32:34,108 copying starfish/morphology.py -> build/lib/starfish 2025-11-25T08:32:34,109 copying starfish/types.py -> build/lib/starfish 2025-11-25T08:32:34,111 copying starfish/config.py -> build/lib/starfish 2025-11-25T08:32:34,113 copying starfish/__main__.py -> build/lib/starfish 2025-11-25T08:32:34,115 copying starfish/spots.py -> build/lib/starfish 2025-11-25T08:32:34,117 creating build/lib/starfish/core 2025-11-25T08:32:34,118 copying starfish/core/_display.py -> build/lib/starfish/core 2025-11-25T08:32:34,120 copying starfish/core/__init__.py -> build/lib/starfish/core 2025-11-25T08:32:34,122 copying starfish/core/_version.py -> build/lib/starfish/core 2025-11-25T08:32:34,123 copying starfish/core/errors.py -> build/lib/starfish/core 2025-11-25T08:32:34,125 copying starfish/core/starfish.py -> build/lib/starfish/core 2025-11-25T08:32:34,127 creating build/lib/starfish/experiment 2025-11-25T08:32:34,128 copying starfish/experiment/builder.py -> build/lib/starfish/experiment 2025-11-25T08:32:34,130 copying starfish/experiment/__init__.py -> build/lib/starfish/experiment 2025-11-25T08:32:34,132 creating build/lib/starfish/util 2025-11-25T08:32:34,133 copying starfish/util/__init__.py -> build/lib/starfish/util 2025-11-25T08:32:34,135 copying starfish/util/plot.py -> build/lib/starfish/util 2025-11-25T08:32:34,137 creating build/lib/starfish/test 2025-11-25T08:32:34,138 copying starfish/test/__init__.py -> build/lib/starfish/test 2025-11-25T08:32:34,140 creating build/lib/starfish/core/imagestack 2025-11-25T08:32:34,141 copying starfish/core/imagestack/dataorder.py -> build/lib/starfish/core/imagestack 2025-11-25T08:32:34,143 copying starfish/core/imagestack/imagestack.py -> build/lib/starfish/core/imagestack 2025-11-25T08:32:34,146 copying starfish/core/imagestack/indexing_utils.py -> build/lib/starfish/core/imagestack 2025-11-25T08:32:34,148 copying starfish/core/imagestack/__init__.py -> build/lib/starfish/core/imagestack 2025-11-25T08:32:34,150 copying starfish/core/imagestack/physical_coordinates.py -> build/lib/starfish/core/imagestack 2025-11-25T08:32:34,152 creating build/lib/starfish/core/image 2025-11-25T08:32:34,153 copying starfish/core/image/__init__.py -> build/lib/starfish/core/image 2025-11-25T08:32:34,155 creating build/lib/starfish/core/codebook 2025-11-25T08:32:34,156 copying starfish/core/codebook/codebook.py -> build/lib/starfish/core/codebook 2025-11-25T08:32:34,159 copying starfish/core/codebook/_format.py -> build/lib/starfish/core/codebook 2025-11-25T08:32:34,161 copying starfish/core/codebook/__init__.py -> build/lib/starfish/core/codebook 2025-11-25T08:32:34,162 creating build/lib/starfish/core/config 2025-11-25T08:32:34,163 copying starfish/core/config/__init__.py -> build/lib/starfish/core/config 2025-11-25T08:32:34,166 creating build/lib/starfish/core/experiment 2025-11-25T08:32:34,167 copying starfish/core/experiment/__init__.py -> build/lib/starfish/core/experiment 2025-11-25T08:32:34,169 copying starfish/core/experiment/experiment.py -> build/lib/starfish/core/experiment 2025-11-25T08:32:34,171 copying starfish/core/experiment/version.py -> build/lib/starfish/core/experiment 2025-11-25T08:32:34,174 creating build/lib/starfish/core/util 2025-11-25T08:32:34,175 copying starfish/core/util/logging.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,177 copying starfish/core/util/exec.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,179 copying starfish/core/util/argparse.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,180 copying starfish/core/util/__init__.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,182 copying starfish/core/util/clock.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,183 copying starfish/core/util/enum.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,185 copying starfish/core/util/config.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,187 copying starfish/core/util/levels.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,189 copying starfish/core/util/try_import.py -> build/lib/starfish/core/util 2025-11-25T08:32:34,191 creating build/lib/starfish/core/morphology 2025-11-25T08:32:34,192 copying starfish/core/morphology/__init__.py -> build/lib/starfish/core/morphology 2025-11-25T08:32:34,193 copying starfish/core/morphology/util.py -> build/lib/starfish/core/morphology 2025-11-25T08:32:34,195 creating build/lib/starfish/core/spots 2025-11-25T08:32:34,196 copying starfish/core/spots/__init__.py -> build/lib/starfish/core/spots 2025-11-25T08:32:34,199 creating build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,199 copying starfish/core/spacetx_format/test_codebook.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,201 copying starfish/core/spacetx_format/test_experiment.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,203 copying starfish/core/spacetx_format/validate_sptx.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,205 copying starfish/core/spacetx_format/__init__.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,207 copying starfish/core/spacetx_format/test_coordinates.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,209 copying starfish/core/spacetx_format/test_fov_manifest.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,210 copying starfish/core/spacetx_format/test_fuzz.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,212 copying starfish/core/spacetx_format/util.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,215 copying starfish/core/spacetx_format/test_field_of_view.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,216 copying starfish/core/spacetx_format/cli.py -> build/lib/starfish/core/spacetx_format 2025-11-25T08:32:34,219 creating build/lib/starfish/core/test 2025-11-25T08:32:34,220 copying starfish/core/test/test_display.py -> build/lib/starfish/core/test 2025-11-25T08:32:34,222 copying starfish/core/test/__init__.py -> build/lib/starfish/core/test 2025-11-25T08:32:34,223 copying starfish/core/test/test_synthetic_spot_creation.py -> build/lib/starfish/core/test 2025-11-25T08:32:34,225 copying starfish/core/test/factories.py -> build/lib/starfish/core/test 2025-11-25T08:32:34,228 copying starfish/core/test/test_multiprocessing_workflow.py -> build/lib/starfish/core/test 2025-11-25T08:32:34,230 creating build/lib/starfish/core/types 2025-11-25T08:32:34,231 copying starfish/core/types/_spot_finding_results.py -> build/lib/starfish/core/types 2025-11-25T08:32:34,234 copying starfish/core/types/__init__.py -> build/lib/starfish/core/types 2025-11-25T08:32:34,235 copying starfish/core/types/_functionsource.py -> build/lib/starfish/core/types 2025-11-25T08:32:34,237 copying starfish/core/types/_decoded_spots.py -> build/lib/starfish/core/types 2025-11-25T08:32:34,239 copying starfish/core/types/_validated_table.py -> build/lib/starfish/core/types 2025-11-25T08:32:34,241 copying starfish/core/types/_spot_attributes.py -> build/lib/starfish/core/types 2025-11-25T08:32:34,243 copying starfish/core/types/_constants.py -> build/lib/starfish/core/types 2025-11-25T08:32:34,246 creating build/lib/starfish/core/pipeline 2025-11-25T08:32:34,247 copying starfish/core/pipeline/__init__.py -> build/lib/starfish/core/pipeline 2025-11-25T08:32:34,249 copying starfish/core/pipeline/algorithmbase.py -> build/lib/starfish/core/pipeline 2025-11-25T08:32:34,251 creating build/lib/starfish/core/intensity_table 2025-11-25T08:32:34,252 copying starfish/core/intensity_table/concatenate.py -> build/lib/starfish/core/intensity_table 2025-11-25T08:32:34,254 copying starfish/core/intensity_table/overlap.py -> build/lib/starfish/core/intensity_table 2025-11-25T08:32:34,256 copying starfish/core/intensity_table/__init__.py -> build/lib/starfish/core/intensity_table 2025-11-25T08:32:34,258 copying starfish/core/intensity_table/intensity_table.py -> build/lib/starfish/core/intensity_table 2025-11-25T08:32:34,260 copying starfish/core/intensity_table/intensity_table_coordinates.py -> build/lib/starfish/core/intensity_table 2025-11-25T08:32:34,262 copying starfish/core/intensity_table/decoded_intensity_table.py -> build/lib/starfish/core/intensity_table 2025-11-25T08:32:34,265 creating build/lib/starfish/core/segmentation_mask 2025-11-25T08:32:34,266 copying starfish/core/segmentation_mask/__init__.py -> build/lib/starfish/core/segmentation_mask 2025-11-25T08:32:34,268 copying starfish/core/segmentation_mask/segmentation_mask.py -> build/lib/starfish/core/segmentation_mask 2025-11-25T08:32:34,270 creating build/lib/starfish/core/expression_matrix 2025-11-25T08:32:34,271 copying starfish/core/expression_matrix/concatenate.py -> build/lib/starfish/core/expression_matrix 2025-11-25T08:32:34,273 copying starfish/core/expression_matrix/__init__.py -> build/lib/starfish/core/expression_matrix 2025-11-25T08:32:34,274 copying starfish/core/expression_matrix/expression_matrix.py -> build/lib/starfish/core/expression_matrix 2025-11-25T08:32:34,277 creating build/lib/starfish/core/imagestack/parser 2025-11-25T08:32:34,278 copying starfish/core/imagestack/parser/_tiledata.py -> build/lib/starfish/core/imagestack/parser 2025-11-25T08:32:34,280 copying starfish/core/imagestack/parser/__init__.py -> build/lib/starfish/core/imagestack/parser 2025-11-25T08:32:34,282 copying starfish/core/imagestack/parser/_key.py -> build/lib/starfish/core/imagestack/parser 2025-11-25T08:32:34,283 copying starfish/core/imagestack/parser/crop.py -> build/lib/starfish/core/imagestack/parser 2025-11-25T08:32:34,287 creating build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,289 copying starfish/core/imagestack/test/test_labeled_indices.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,293 copying starfish/core/imagestack/test/test_cropped_load.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,295 copying starfish/core/imagestack/test/test_metadata.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,297 copying starfish/core/imagestack/test/test_from_tilefetcher.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,299 copying starfish/core/imagestack/test/test_index.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,301 copying starfish/core/imagestack/test/test_max_proj.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,303 copying starfish/core/imagestack/test/imagestack_test_utils.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,305 copying starfish/core/imagestack/test/__init__.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,307 copying starfish/core/imagestack/test/test_from_xarray.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,309 copying starfish/core/imagestack/test/test_coordinates.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,311 copying starfish/core/imagestack/test/test_from_numpy_array.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,313 copying starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,315 copying starfish/core/imagestack/test/test_export.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,317 copying starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,319 copying starfish/core/imagestack/test/test_apply.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,321 copying starfish/core/imagestack/test/test_slice_ops.py -> build/lib/starfish/core/imagestack/test 2025-11-25T08:32:34,323 creating build/lib/starfish/core/imagestack/parser/xarray 2025-11-25T08:32:34,324 copying starfish/core/imagestack/parser/xarray/__init__.py -> build/lib/starfish/core/imagestack/parser/xarray 2025-11-25T08:32:34,327 creating build/lib/starfish/core/imagestack/parser/numpy 2025-11-25T08:32:34,327 copying starfish/core/imagestack/parser/numpy/__init__.py -> build/lib/starfish/core/imagestack/parser/numpy 2025-11-25T08:32:34,330 creating build/lib/starfish/core/imagestack/parser/tilefetcher 2025-11-25T08:32:34,331 copying starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2025-11-25T08:32:34,333 copying starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/lib/starfish/core/imagestack/parser/tilefetcher 2025-11-25T08:32:34,335 creating build/lib/starfish/core/imagestack/parser/tileset 2025-11-25T08:32:34,336 copying starfish/core/imagestack/parser/tileset/_parser.py -> build/lib/starfish/core/imagestack/parser/tileset 2025-11-25T08:32:34,339 copying starfish/core/imagestack/parser/tileset/__init__.py -> build/lib/starfish/core/imagestack/parser/tileset 2025-11-25T08:32:34,341 creating build/lib/starfish/core/imagestack/test/factories 2025-11-25T08:32:34,342 copying starfish/core/imagestack/test/factories/with_coords.py -> build/lib/starfish/core/imagestack/test/factories 2025-11-25T08:32:34,344 copying starfish/core/imagestack/test/factories/unique_tiles.py -> build/lib/starfish/core/imagestack/test/factories 2025-11-25T08:32:34,346 copying starfish/core/imagestack/test/factories/__init__.py -> build/lib/starfish/core/imagestack/test/factories 2025-11-25T08:32:34,347 copying starfish/core/imagestack/test/factories/from_codebook.py -> build/lib/starfish/core/imagestack/test/factories 2025-11-25T08:32:34,349 copying starfish/core/imagestack/test/factories/synthetic_stack.py -> build/lib/starfish/core/imagestack/test/factories 2025-11-25T08:32:34,351 copying starfish/core/imagestack/test/factories/all_purpose.py -> build/lib/starfish/core/imagestack/test/factories 2025-11-25T08:32:34,354 creating build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,355 copying starfish/core/image/Filter/match_histograms.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,357 copying starfish/core/image/Filter/mean_high_pass.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,359 copying starfish/core/image/Filter/gaussian_high_pass.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,361 copying starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,363 copying starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,365 copying starfish/core/image/Filter/clip.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,367 copying starfish/core/image/Filter/_base.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,369 copying starfish/core/image/Filter/__init__.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,371 copying starfish/core/image/Filter/gaussian_low_pass.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,374 copying starfish/core/image/Filter/call_bases.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,376 copying starfish/core/image/Filter/white_tophat.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,378 copying starfish/core/image/Filter/util.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,380 copying starfish/core/image/Filter/element_wise_mult.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,382 copying starfish/core/image/Filter/map.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,384 copying starfish/core/image/Filter/bandpass.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,386 copying starfish/core/image/Filter/clip_percentile_to_zero.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,388 copying starfish/core/image/Filter/clip_value_to_zero.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,390 copying starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,392 copying starfish/core/image/Filter/laplace.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,395 copying starfish/core/image/Filter/linear_unmixing.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,397 copying starfish/core/image/Filter/reduce.py -> build/lib/starfish/core/image/Filter 2025-11-25T08:32:34,400 creating build/lib/starfish/core/image/Segment 2025-11-25T08:32:34,401 copying starfish/core/image/Segment/watershed.py -> build/lib/starfish/core/image/Segment 2025-11-25T08:32:34,403 copying starfish/core/image/Segment/_base.py -> build/lib/starfish/core/image/Segment 2025-11-25T08:32:34,405 copying starfish/core/image/Segment/__init__.py -> build/lib/starfish/core/image/Segment 2025-11-25T08:32:34,407 creating build/lib/starfish/core/image/_registration 2025-11-25T08:32:34,408 copying starfish/core/image/_registration/_format.py -> build/lib/starfish/core/image/_registration 2025-11-25T08:32:34,410 copying starfish/core/image/_registration/__init__.py -> build/lib/starfish/core/image/_registration 2025-11-25T08:32:34,412 copying starfish/core/image/_registration/transforms_list.py -> build/lib/starfish/core/image/_registration 2025-11-25T08:32:34,415 creating build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,416 copying starfish/core/image/Filter/test/test_call_bases.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,418 copying starfish/core/image/Filter/test/test_reduce.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,420 copying starfish/core/image/Filter/test/__init__.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,422 copying starfish/core/image/Filter/test/test_histogram_matching.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,423 copying starfish/core/image/Filter/test/test_api_contract.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,425 copying starfish/core/image/Filter/test/test_white_tophat.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,427 copying starfish/core/image/Filter/test/test_linear_unmixing.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,429 copying starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,431 copying starfish/core/image/Filter/test/test_filter.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,433 copying starfish/core/image/Filter/test/test_map.py -> build/lib/starfish/core/image/Filter/test 2025-11-25T08:32:34,435 creating build/lib/starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:34,436 copying starfish/core/image/_registration/ApplyTransform/_base.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:34,439 copying starfish/core/image/_registration/ApplyTransform/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:34,441 copying starfish/core/image/_registration/ApplyTransform/warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:34,443 creating build/lib/starfish/core/image/_registration/test 2025-11-25T08:32:34,444 copying starfish/core/image/_registration/test/__init__.py -> build/lib/starfish/core/image/_registration/test 2025-11-25T08:32:34,446 copying starfish/core/image/_registration/test/test_transforms_list.py -> build/lib/starfish/core/image/_registration/test 2025-11-25T08:32:34,449 creating build/lib/starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:34,450 copying starfish/core/image/_registration/LearnTransform/_base.py -> build/lib/starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:34,452 copying starfish/core/image/_registration/LearnTransform/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:34,454 copying starfish/core/image/_registration/LearnTransform/translation.py -> build/lib/starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:34,456 creating build/lib/starfish/core/image/_registration/ApplyTransform/test 2025-11-25T08:32:34,457 copying starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2025-11-25T08:32:34,459 copying starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/lib/starfish/core/image/_registration/ApplyTransform/test 2025-11-25T08:32:34,461 creating build/lib/starfish/core/image/_registration/LearnTransform/test 2025-11-25T08:32:34,462 copying starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2025-11-25T08:32:34,464 copying starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/lib/starfish/core/image/_registration/LearnTransform/test 2025-11-25T08:32:34,466 creating build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,467 copying starfish/core/codebook/test/test_to_json.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,469 copying starfish/core/codebook/test/test_approximate_nearest_code.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,471 copying starfish/core/codebook/test/test_code_length.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,473 copying starfish/core/codebook/test/__init__.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,474 copying starfish/core/codebook/test/test_from_code_array.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,477 copying starfish/core/codebook/test/factories.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,479 copying starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,481 copying starfish/core/codebook/test/test_metric_decode.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,483 copying starfish/core/codebook/test/test_normalize_code_traces.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,485 copying starfish/core/codebook/test/test_per_round_max_decode.py -> build/lib/starfish/core/codebook/test 2025-11-25T08:32:34,487 creating build/lib/starfish/core/config/test 2025-11-25T08:32:34,488 copying starfish/core/config/test/test_config.py -> build/lib/starfish/core/config/test 2025-11-25T08:32:34,491 copying starfish/core/config/test/__init__.py -> build/lib/starfish/core/config/test 2025-11-25T08:32:34,493 creating build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,494 copying starfish/core/experiment/builder/builder.py -> build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,497 copying starfish/core/experiment/builder/providers.py -> build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,499 copying starfish/core/experiment/builder/__init__.py -> build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,501 copying starfish/core/experiment/builder/defaultproviders.py -> build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,502 copying starfish/core/experiment/builder/inplace.py -> build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,504 copying starfish/core/experiment/builder/structured_formatter.py -> build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,507 copying starfish/core/experiment/builder/orderediterator.py -> build/lib/starfish/core/experiment/builder 2025-11-25T08:32:34,510 creating build/lib/starfish/core/experiment/test 2025-11-25T08:32:34,511 copying starfish/core/experiment/test/test_version.py -> build/lib/starfish/core/experiment/test 2025-11-25T08:32:34,513 copying starfish/core/experiment/test/test_get_image_repr_warning.py -> build/lib/starfish/core/experiment/test 2025-11-25T08:32:34,515 copying starfish/core/experiment/test/test_experiment.py -> build/lib/starfish/core/experiment/test 2025-11-25T08:32:34,517 copying starfish/core/experiment/test/__init__.py -> build/lib/starfish/core/experiment/test 2025-11-25T08:32:34,519 creating build/lib/starfish/core/experiment/builder/test 2025-11-25T08:32:34,520 copying starfish/core/experiment/builder/test/test_orderediterator.py -> build/lib/starfish/core/experiment/builder/test 2025-11-25T08:32:34,522 copying starfish/core/experiment/builder/test/test_inplace.py -> build/lib/starfish/core/experiment/builder/test 2025-11-25T08:32:34,524 copying starfish/core/experiment/builder/test/__init__.py -> build/lib/starfish/core/experiment/builder/test 2025-11-25T08:32:34,526 copying starfish/core/experiment/builder/test/test_small_axis.py -> build/lib/starfish/core/experiment/builder/test 2025-11-25T08:32:34,528 creating build/lib/starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:34,529 copying starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:34,531 copying starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:34,533 copying starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:34,535 copying starfish/core/experiment/builder/test/structured_formatter/util.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:34,537 copying starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/lib/starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:34,540 creating build/lib/starfish/core/experiment/builder/test/factories 2025-11-25T08:32:34,541 copying starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/lib/starfish/core/experiment/builder/test/factories 2025-11-25T08:32:34,542 copying starfish/core/experiment/builder/test/factories/__init__.py -> build/lib/starfish/core/experiment/builder/test/factories 2025-11-25T08:32:34,544 copying starfish/core/experiment/builder/test/factories/all_purpose.py -> build/lib/starfish/core/experiment/builder/test/factories 2025-11-25T08:32:34,547 creating build/lib/starfish/core/util/click 2025-11-25T08:32:34,548 copying starfish/core/util/click/__init__.py -> build/lib/starfish/core/util/click 2025-11-25T08:32:34,550 creating build/lib/starfish/core/util/test 2025-11-25T08:32:34,551 copying starfish/core/util/test/test_preserve_float_range.py -> build/lib/starfish/core/util/test 2025-11-25T08:32:34,554 copying starfish/core/util/test/__init__.py -> build/lib/starfish/core/util/test 2025-11-25T08:32:34,555 copying starfish/core/util/test/test_levels.py -> build/lib/starfish/core/util/test 2025-11-25T08:32:34,558 creating build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,559 copying starfish/core/morphology/Filter/structural_label.py -> build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,561 copying starfish/core/morphology/Filter/_base.py -> build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,563 copying starfish/core/morphology/Filter/__init__.py -> build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,564 copying starfish/core/morphology/Filter/areafilter.py -> build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,566 copying starfish/core/morphology/Filter/min_distance_label.py -> build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,568 copying starfish/core/morphology/Filter/map.py -> build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,570 copying starfish/core/morphology/Filter/reduce.py -> build/lib/starfish/core/morphology/Filter 2025-11-25T08:32:34,573 creating build/lib/starfish/core/morphology/Segment 2025-11-25T08:32:34,574 copying starfish/core/morphology/Segment/watershed.py -> build/lib/starfish/core/morphology/Segment 2025-11-25T08:32:34,575 copying starfish/core/morphology/Segment/_base.py -> build/lib/starfish/core/morphology/Segment 2025-11-25T08:32:34,577 copying starfish/core/morphology/Segment/__init__.py -> build/lib/starfish/core/morphology/Segment 2025-11-25T08:32:34,579 creating build/lib/starfish/core/morphology/label_image 2025-11-25T08:32:34,580 copying starfish/core/morphology/label_image/__init__.py -> build/lib/starfish/core/morphology/label_image 2025-11-25T08:32:34,582 copying starfish/core/morphology/label_image/label_image.py -> build/lib/starfish/core/morphology/label_image 2025-11-25T08:32:34,585 creating build/lib/starfish/core/morphology/Binarize 2025-11-25T08:32:34,586 copying starfish/core/morphology/Binarize/_base.py -> build/lib/starfish/core/morphology/Binarize 2025-11-25T08:32:34,587 copying starfish/core/morphology/Binarize/__init__.py -> build/lib/starfish/core/morphology/Binarize 2025-11-25T08:32:34,589 copying starfish/core/morphology/Binarize/threshold.py -> build/lib/starfish/core/morphology/Binarize 2025-11-25T08:32:34,591 creating build/lib/starfish/core/morphology/Merge 2025-11-25T08:32:34,592 copying starfish/core/morphology/Merge/simple.py -> build/lib/starfish/core/morphology/Merge 2025-11-25T08:32:34,594 copying starfish/core/morphology/Merge/_base.py -> build/lib/starfish/core/morphology/Merge 2025-11-25T08:32:34,596 copying starfish/core/morphology/Merge/__init__.py -> build/lib/starfish/core/morphology/Merge 2025-11-25T08:32:34,598 creating build/lib/starfish/core/morphology/binary_mask 2025-11-25T08:32:34,599 copying starfish/core/morphology/binary_mask/_io.py -> build/lib/starfish/core/morphology/binary_mask 2025-11-25T08:32:34,602 copying starfish/core/morphology/binary_mask/__init__.py -> build/lib/starfish/core/morphology/binary_mask 2025-11-25T08:32:34,603 copying starfish/core/morphology/binary_mask/binary_mask.py -> build/lib/starfish/core/morphology/binary_mask 2025-11-25T08:32:34,606 copying starfish/core/morphology/binary_mask/expand.py -> build/lib/starfish/core/morphology/binary_mask 2025-11-25T08:32:34,609 creating build/lib/starfish/core/morphology/Filter/test 2025-11-25T08:32:34,610 copying starfish/core/morphology/Filter/test/test_reduce.py -> build/lib/starfish/core/morphology/Filter/test 2025-11-25T08:32:34,612 copying starfish/core/morphology/Filter/test/test_areafilter.py -> build/lib/starfish/core/morphology/Filter/test 2025-11-25T08:32:34,613 copying starfish/core/morphology/Filter/test/__init__.py -> build/lib/starfish/core/morphology/Filter/test 2025-11-25T08:32:34,615 copying starfish/core/morphology/Filter/test/test_map.py -> build/lib/starfish/core/morphology/Filter/test 2025-11-25T08:32:34,617 creating build/lib/starfish/core/morphology/label_image/test 2025-11-25T08:32:34,618 copying starfish/core/morphology/label_image/test/__init__.py -> build/lib/starfish/core/morphology/label_image/test 2025-11-25T08:32:34,620 copying starfish/core/morphology/label_image/test/test_label_image.py -> build/lib/starfish/core/morphology/label_image/test 2025-11-25T08:32:34,623 creating build/lib/starfish/core/morphology/Binarize/test 2025-11-25T08:32:34,624 copying starfish/core/morphology/Binarize/test/test_threshold.py -> build/lib/starfish/core/morphology/Binarize/test 2025-11-25T08:32:34,626 copying starfish/core/morphology/Binarize/test/__init__.py -> build/lib/starfish/core/morphology/Binarize/test 2025-11-25T08:32:34,628 creating build/lib/starfish/core/morphology/Merge/test 2025-11-25T08:32:34,629 copying starfish/core/morphology/Merge/test/test_simple.py -> build/lib/starfish/core/morphology/Merge/test 2025-11-25T08:32:34,631 copying starfish/core/morphology/Merge/test/__init__.py -> build/lib/starfish/core/morphology/Merge/test 2025-11-25T08:32:34,634 creating build/lib/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:34,635 copying starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:34,637 copying starfish/core/morphology/binary_mask/test/__init__.py -> build/lib/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:34,639 copying starfish/core/morphology/binary_mask/test/factories.py -> build/lib/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:34,640 copying starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/lib/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:34,643 copying starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/lib/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:34,645 copying starfish/core/morphology/binary_mask/test/test_expand.py -> build/lib/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:34,647 creating build/lib/starfish/core/spots/DetectPixels 2025-11-25T08:32:34,648 copying starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/lib/starfish/core/spots/DetectPixels 2025-11-25T08:32:34,650 copying starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/lib/starfish/core/spots/DetectPixels 2025-11-25T08:32:34,653 copying starfish/core/spots/DetectPixels/_base.py -> build/lib/starfish/core/spots/DetectPixels 2025-11-25T08:32:34,655 copying starfish/core/spots/DetectPixels/__init__.py -> build/lib/starfish/core/spots/DetectPixels 2025-11-25T08:32:34,657 creating build/lib/starfish/core/spots/FindSpots 2025-11-25T08:32:34,658 copying starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2025-11-25T08:32:34,661 copying starfish/core/spots/FindSpots/_base.py -> build/lib/starfish/core/spots/FindSpots 2025-11-25T08:32:34,663 copying starfish/core/spots/FindSpots/__init__.py -> build/lib/starfish/core/spots/FindSpots 2025-11-25T08:32:34,665 copying starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots 2025-11-25T08:32:34,668 copying starfish/core/spots/FindSpots/blob.py -> build/lib/starfish/core/spots/FindSpots 2025-11-25T08:32:34,670 copying starfish/core/spots/FindSpots/spot_finding_utils.py -> build/lib/starfish/core/spots/FindSpots 2025-11-25T08:32:34,673 creating build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,674 copying starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,676 copying starfish/core/spots/DecodeSpots/trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,678 copying starfish/core/spots/DecodeSpots/_base.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,680 copying starfish/core/spots/DecodeSpots/__init__.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,682 copying starfish/core/spots/DecodeSpots/util.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,685 copying starfish/core/spots/DecodeSpots/metric_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,687 copying starfish/core/spots/DecodeSpots/check_all_funcs.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,690 copying starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,692 copying starfish/core/spots/DecodeSpots/check_all_decoder.py -> build/lib/starfish/core/spots/DecodeSpots 2025-11-25T08:32:34,695 creating build/lib/starfish/core/spots/AssignTargets 2025-11-25T08:32:34,696 copying starfish/core/spots/AssignTargets/_base.py -> build/lib/starfish/core/spots/AssignTargets 2025-11-25T08:32:34,699 copying starfish/core/spots/AssignTargets/__init__.py -> build/lib/starfish/core/spots/AssignTargets 2025-11-25T08:32:34,701 copying starfish/core/spots/AssignTargets/label.py -> build/lib/starfish/core/spots/AssignTargets 2025-11-25T08:32:34,703 creating build/lib/starfish/core/spots/DetectPixels/test 2025-11-25T08:32:34,704 copying starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/lib/starfish/core/spots/DetectPixels/test 2025-11-25T08:32:34,707 copying starfish/core/spots/DetectPixels/test/__init__.py -> build/lib/starfish/core/spots/DetectPixels/test 2025-11-25T08:32:34,708 copying starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/lib/starfish/core/spots/DetectPixels/test 2025-11-25T08:32:34,710 copying starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/lib/starfish/core/spots/DetectPixels/test 2025-11-25T08:32:34,712 copying starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/lib/starfish/core/spots/DetectPixels/test 2025-11-25T08:32:34,714 creating build/lib/starfish/core/spots/FindSpots/test 2025-11-25T08:32:34,715 copying starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/lib/starfish/core/spots/FindSpots/test 2025-11-25T08:32:34,718 copying starfish/core/spots/FindSpots/test/__init__.py -> build/lib/starfish/core/spots/FindSpots/test 2025-11-25T08:32:34,719 copying starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/lib/starfish/core/spots/FindSpots/test 2025-11-25T08:32:34,722 copying starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py -> build/lib/starfish/core/spots/FindSpots/test 2025-11-25T08:32:34,724 creating build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,725 copying starfish/core/spots/DecodeSpots/test/test_spot_finders.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,727 copying starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,729 copying starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,732 copying starfish/core/spots/DecodeSpots/test/test_check_all.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,735 copying starfish/core/spots/DecodeSpots/test/__init__.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,737 copying starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,740 copying starfish/core/spots/DecodeSpots/test/test_metric_decoder.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,742 copying starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/lib/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:34,746 creating build/lib/starfish/core/types/test 2025-11-25T08:32:34,747 copying starfish/core/types/test/test_decoded_spots.py -> build/lib/starfish/core/types/test 2025-11-25T08:32:34,750 copying starfish/core/types/test/test_saving_spots.py -> build/lib/starfish/core/types/test 2025-11-25T08:32:34,752 copying starfish/core/types/test/__init__.py -> build/lib/starfish/core/types/test 2025-11-25T08:32:34,755 creating build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,756 copying starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,759 copying starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,762 copying starfish/core/intensity_table/test/test_from_spot_data.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,764 copying starfish/core/intensity_table/test/__init__.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,766 copying starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,769 copying starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,771 copying starfish/core/intensity_table/test/test_to_mermaid.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,774 copying starfish/core/intensity_table/test/test_from_imagestack.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,776 copying starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,779 copying starfish/core/intensity_table/test/test_overlap.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,782 copying starfish/core/intensity_table/test/factories.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,784 copying starfish/core/intensity_table/test/test_concatenate.py -> build/lib/starfish/core/intensity_table/test 2025-11-25T08:32:34,788 creating build/lib/starfish/core/expression_matrix/test 2025-11-25T08:32:34,789 copying starfish/core/expression_matrix/test/__init__.py -> build/lib/starfish/core/expression_matrix/test 2025-11-25T08:32:34,791 copying starfish/core/expression_matrix/test/test_serialization.py -> build/lib/starfish/core/expression_matrix/test 2025-11-25T08:32:34,795 copying starfish/core/expression_matrix/test/test_concatenate.py -> build/lib/starfish/core/expression_matrix/test 2025-11-25T08:32:34,799 creating build/lib/starfish/test/full_pipelines 2025-11-25T08:32:34,801 copying starfish/test/full_pipelines/__init__.py -> build/lib/starfish/test/full_pipelines 2025-11-25T08:32:34,806 creating build/lib/starfish/test/full_pipelines/api 2025-11-25T08:32:34,808 copying starfish/test/full_pipelines/api/test_merfish.py -> build/lib/starfish/test/full_pipelines/api 2025-11-25T08:32:34,814 copying starfish/test/full_pipelines/api/__init__.py -> build/lib/starfish/test/full_pipelines/api 2025-11-25T08:32:34,818 copying starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/lib/starfish/test/full_pipelines/api 2025-11-25T08:32:34,823 copying starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/lib/starfish/test/full_pipelines/api 2025-11-25T08:32:34,828 copying starfish/test/full_pipelines/api/test_dartfish.py -> build/lib/starfish/test/full_pipelines/api 2025-11-25T08:32:34,834 copying starfish/test/full_pipelines/api/test_iss_api.py -> build/lib/starfish/test/full_pipelines/api 2025-11-25T08:32:34,839 running egg_info 2025-11-25T08:32:34,853 writing starfish.egg-info/PKG-INFO 2025-11-25T08:32:34,871 writing dependency_links to starfish.egg-info/dependency_links.txt 2025-11-25T08:32:34,877 writing entry points to starfish.egg-info/entry_points.txt 2025-11-25T08:32:34,886 writing requirements to starfish.egg-info/requires.txt 2025-11-25T08:32:34,893 writing top-level names to starfish.egg-info/top_level.txt 2025-11-25T08:32:34,988 reading manifest file 'starfish.egg-info/SOURCES.txt' 2025-11-25T08:32:35,017 reading manifest template 'MANIFEST.in' 2025-11-25T08:32:35,040 adding license file 'LICENSE' 2025-11-25T08:32:35,057 writing manifest file 'starfish.egg-info/SOURCES.txt' 2025-11-25T08:32:35,069 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'starfish.spacetx_format.examples.codebook' is absent from the `packages` configuration. 2025-11-25T08:32:35,070 !! 2025-11-25T08:32:35,071 ******************************************************************************** 2025-11-25T08:32:35,072 ############################ 2025-11-25T08:32:35,072 # Package would be ignored # 2025-11-25T08:32:35,073 ############################ 2025-11-25T08:32:35,073 Python recognizes 'starfish.spacetx_format.examples.codebook' as an importable package[^1], 2025-11-25T08:32:35,074 but it is absent from setuptools' `packages` configuration. 2025-11-25T08:32:35,075 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-25T08:32:35,075 package, please make sure that 'starfish.spacetx_format.examples.codebook' is explicitly added 2025-11-25T08:32:35,076 to the `packages` configuration field. 2025-11-25T08:32:35,077 Alternatively, you can also rely on setuptools' discovery methods 2025-11-25T08:32:35,077 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-25T08:32:35,078 instead of `find_packages(...)`/`find:`). 2025-11-25T08:32:35,079 You can read more about "package discovery" on setuptools documentation page: 2025-11-25T08:32:35,080 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-25T08:32:35,081 If you don't want 'starfish.spacetx_format.examples.codebook' to be distributed and are 2025-11-25T08:32:35,081 already explicitly excluding 'starfish.spacetx_format.examples.codebook' via 2025-11-25T08:32:35,082 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-25T08:32:35,082 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-25T08:32:35,083 combination with a more fine grained `package-data` configuration. 2025-11-25T08:32:35,084 You can read more about "package data files" on setuptools documentation page: 2025-11-25T08:32:35,085 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-25T08:32:35,086 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-25T08:32:35,087 even if it does not contain any `.py` files. 2025-11-25T08:32:35,087 On the other hand, currently there is no concept of package data 2025-11-25T08:32:35,088 directory, all directories are treated like packages. 2025-11-25T08:32:35,088 ******************************************************************************** 2025-11-25T08:32:35,089 !! 2025-11-25T08:32:35,090 check.warn(importable) 2025-11-25T08:32:35,090 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'starfish.spacetx_format.examples.experiment' is absent from the `packages` configuration. 2025-11-25T08:32:35,091 !! 2025-11-25T08:32:35,092 ******************************************************************************** 2025-11-25T08:32:35,093 ############################ 2025-11-25T08:32:35,093 # Package would be ignored # 2025-11-25T08:32:35,094 ############################ 2025-11-25T08:32:35,094 Python recognizes 'starfish.spacetx_format.examples.experiment' as an importable package[^1], 2025-11-25T08:32:35,095 but it is absent from setuptools' `packages` configuration. 2025-11-25T08:32:35,096 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-25T08:32:35,096 package, please make sure that 'starfish.spacetx_format.examples.experiment' is explicitly added 2025-11-25T08:32:35,097 to the `packages` configuration field. 2025-11-25T08:32:35,098 Alternatively, you can also rely on setuptools' discovery methods 2025-11-25T08:32:35,099 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-25T08:32:35,099 instead of `find_packages(...)`/`find:`). 2025-11-25T08:32:35,100 You can read more about "package discovery" on setuptools documentation page: 2025-11-25T08:32:35,101 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-25T08:32:35,102 If you don't want 'starfish.spacetx_format.examples.experiment' to be distributed and are 2025-11-25T08:32:35,103 already explicitly excluding 'starfish.spacetx_format.examples.experiment' via 2025-11-25T08:32:35,103 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-25T08:32:35,104 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-25T08:32:35,104 combination with a more fine grained `package-data` configuration. 2025-11-25T08:32:35,105 You can read more about "package data files" on setuptools documentation page: 2025-11-25T08:32:35,106 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-25T08:32:35,107 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-25T08:32:35,107 even if it does not contain any `.py` files. 2025-11-25T08:32:35,108 On the other hand, currently there is no concept of package data 2025-11-25T08:32:35,108 directory, all directories are treated like packages. 2025-11-25T08:32:35,109 ******************************************************************************** 2025-11-25T08:32:35,110 !! 2025-11-25T08:32:35,110 check.warn(importable) 2025-11-25T08:32:35,110 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'starfish.spacetx_format.examples.field_of_view' is absent from the `packages` configuration. 2025-11-25T08:32:35,111 !! 2025-11-25T08:32:35,112 ******************************************************************************** 2025-11-25T08:32:35,112 ############################ 2025-11-25T08:32:35,113 # Package would be ignored # 2025-11-25T08:32:35,113 ############################ 2025-11-25T08:32:35,114 Python recognizes 'starfish.spacetx_format.examples.field_of_view' as an importable package[^1], 2025-11-25T08:32:35,114 but it is absent from setuptools' `packages` configuration. 2025-11-25T08:32:35,115 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-25T08:32:35,115 package, please make sure that 'starfish.spacetx_format.examples.field_of_view' is explicitly added 2025-11-25T08:32:35,116 to the `packages` configuration field. 2025-11-25T08:32:35,117 Alternatively, you can also rely on setuptools' discovery methods 2025-11-25T08:32:35,117 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-25T08:32:35,118 instead of `find_packages(...)`/`find:`). 2025-11-25T08:32:35,119 You can read more about "package discovery" on setuptools documentation page: 2025-11-25T08:32:35,120 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-25T08:32:35,121 If you don't want 'starfish.spacetx_format.examples.field_of_view' to be distributed and are 2025-11-25T08:32:35,121 already explicitly excluding 'starfish.spacetx_format.examples.field_of_view' via 2025-11-25T08:32:35,122 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-25T08:32:35,122 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-25T08:32:35,123 combination with a more fine grained `package-data` configuration. 2025-11-25T08:32:35,124 You can read more about "package data files" on setuptools documentation page: 2025-11-25T08:32:35,125 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-25T08:32:35,126 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-25T08:32:35,127 even if it does not contain any `.py` files. 2025-11-25T08:32:35,127 On the other hand, currently there is no concept of package data 2025-11-25T08:32:35,127 directory, all directories are treated like packages. 2025-11-25T08:32:35,128 ******************************************************************************** 2025-11-25T08:32:35,129 !! 2025-11-25T08:32:35,130 check.warn(importable) 2025-11-25T08:32:35,130 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'starfish.spacetx_format.examples.fov_manifest' is absent from the `packages` configuration. 2025-11-25T08:32:35,131 !! 2025-11-25T08:32:35,132 ******************************************************************************** 2025-11-25T08:32:35,132 ############################ 2025-11-25T08:32:35,132 # Package would be ignored # 2025-11-25T08:32:35,133 ############################ 2025-11-25T08:32:35,133 Python recognizes 'starfish.spacetx_format.examples.fov_manifest' as an importable package[^1], 2025-11-25T08:32:35,134 but it is absent from setuptools' `packages` configuration. 2025-11-25T08:32:35,134 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-25T08:32:35,135 package, please make sure that 'starfish.spacetx_format.examples.fov_manifest' is explicitly added 2025-11-25T08:32:35,135 to the `packages` configuration field. 2025-11-25T08:32:35,136 Alternatively, you can also rely on setuptools' discovery methods 2025-11-25T08:32:35,137 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-25T08:32:35,137 instead of `find_packages(...)`/`find:`). 2025-11-25T08:32:35,138 You can read more about "package discovery" on setuptools documentation page: 2025-11-25T08:32:35,139 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-25T08:32:35,140 If you don't want 'starfish.spacetx_format.examples.fov_manifest' to be distributed and are 2025-11-25T08:32:35,141 already explicitly excluding 'starfish.spacetx_format.examples.fov_manifest' via 2025-11-25T08:32:35,141 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-25T08:32:35,142 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-25T08:32:35,142 combination with a more fine grained `package-data` configuration. 2025-11-25T08:32:35,143 You can read more about "package data files" on setuptools documentation page: 2025-11-25T08:32:35,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-25T08:32:35,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-25T08:32:35,146 even if it does not contain any `.py` files. 2025-11-25T08:32:35,147 On the other hand, currently there is no concept of package data 2025-11-25T08:32:35,147 directory, all directories are treated like packages. 2025-11-25T08:32:35,148 ******************************************************************************** 2025-11-25T08:32:35,149 !! 2025-11-25T08:32:35,149 check.warn(importable) 2025-11-25T08:32:35,150 /tmp/pip-build-env-1tn8n3h_/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'starfish.spacetx_format.schema' is absent from the `packages` configuration. 2025-11-25T08:32:35,150 !! 2025-11-25T08:32:35,151 ******************************************************************************** 2025-11-25T08:32:35,152 ############################ 2025-11-25T08:32:35,152 # Package would be ignored # 2025-11-25T08:32:35,153 ############################ 2025-11-25T08:32:35,153 Python recognizes 'starfish.spacetx_format.schema' as an importable package[^1], 2025-11-25T08:32:35,154 but it is absent from setuptools' `packages` configuration. 2025-11-25T08:32:35,155 This leads to an ambiguous overall configuration. If you want to distribute this 2025-11-25T08:32:35,156 package, please make sure that 'starfish.spacetx_format.schema' is explicitly added 2025-11-25T08:32:35,156 to the `packages` configuration field. 2025-11-25T08:32:35,157 Alternatively, you can also rely on setuptools' discovery methods 2025-11-25T08:32:35,158 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-11-25T08:32:35,158 instead of `find_packages(...)`/`find:`). 2025-11-25T08:32:35,159 You can read more about "package discovery" on setuptools documentation page: 2025-11-25T08:32:35,160 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-11-25T08:32:35,161 If you don't want 'starfish.spacetx_format.schema' to be distributed and are 2025-11-25T08:32:35,162 already explicitly excluding 'starfish.spacetx_format.schema' via 2025-11-25T08:32:35,162 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-11-25T08:32:35,162 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-11-25T08:32:35,163 combination with a more fine grained `package-data` configuration. 2025-11-25T08:32:35,164 You can read more about "package data files" on setuptools documentation page: 2025-11-25T08:32:35,165 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-11-25T08:32:35,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-11-25T08:32:35,167 even if it does not contain any `.py` files. 2025-11-25T08:32:35,167 On the other hand, currently there is no concept of package data 2025-11-25T08:32:35,167 directory, all directories are treated like packages. 2025-11-25T08:32:35,168 ******************************************************************************** 2025-11-25T08:32:35,169 !! 2025-11-25T08:32:35,169 check.warn(importable) 2025-11-25T08:32:35,170 copying starfish/REQUIREMENTS-STRICT.txt -> build/lib/starfish 2025-11-25T08:32:35,170 creating build/lib/starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,171 copying starfish/spacetx_format/examples/codebook/codebook.json -> build/lib/starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,171 copying starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/lib/starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,172 copying starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/lib/starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,172 creating build/lib/starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,173 copying starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,173 copying starfish/spacetx_format/examples/experiment/experiment.json -> build/lib/starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,174 copying starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/lib/starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,174 creating build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,175 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,175 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,176 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,176 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,177 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,177 copying starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,178 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,178 copying starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,179 copying starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,180 copying starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,180 copying starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,181 copying starfish/spacetx_format/examples/field_of_view/too_large.json -> build/lib/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,181 creating build/lib/starfish/spacetx_format/examples/fov_manifest 2025-11-25T08:32:35,181 copying starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/lib/starfish/spacetx_format/examples/fov_manifest 2025-11-25T08:32:35,182 creating build/lib/starfish/spacetx_format/schema 2025-11-25T08:32:35,182 copying starfish/spacetx_format/schema/experiment_4.0.0.json -> build/lib/starfish/spacetx_format/schema 2025-11-25T08:32:35,183 copying starfish/spacetx_format/schema/experiment_5.0.0.json -> build/lib/starfish/spacetx_format/schema 2025-11-25T08:32:35,183 copying starfish/spacetx_format/schema/extras.json -> build/lib/starfish/spacetx_format/schema 2025-11-25T08:32:35,184 copying starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/lib/starfish/spacetx_format/schema 2025-11-25T08:32:35,185 copying starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/lib/starfish/spacetx_format/schema 2025-11-25T08:32:35,187 copying starfish/spacetx_format/schema/version.json -> build/lib/starfish/spacetx_format/schema 2025-11-25T08:32:35,189 creating build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2025-11-25T08:32:35,190 copying starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2025-11-25T08:32:35,193 copying starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/lib/starfish/spacetx_format/schema/codebook_0.0.0 2025-11-25T08:32:35,195 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2025-11-25T08:32:35,196 copying starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0 2025-11-25T08:32:35,198 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:35,199 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:35,202 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:35,204 copying starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:35,206 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2025-11-25T08:32:35,207 copying starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0 2025-11-25T08:32:35,210 creating build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:35,211 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:35,214 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:35,216 copying starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:35,266 UPDATING build/lib/starfish/core/_version.py 2025-11-25T08:32:35,267 set build/lib/starfish/core/_version.py to '0.3.4' 2025-11-25T08:32:35,268 installing to build/bdist.linux-armv7l/wheel 2025-11-25T08:32:35,268 running install 2025-11-25T08:32:35,290 running install_lib 2025-11-25T08:32:35,297 creating build/bdist.linux-armv7l/wheel 2025-11-25T08:32:35,300 creating build/bdist.linux-armv7l/wheel/starfish 2025-11-25T08:32:35,301 copying build/lib/starfish/image.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:35,303 copying build/lib/starfish/test.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:35,305 copying build/lib/starfish/data.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:35,307 creating build/bdist.linux-armv7l/wheel/starfish/core 2025-11-25T08:32:35,309 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack 2025-11-25T08:32:35,310 copying build/lib/starfish/core/imagestack/dataorder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2025-11-25T08:32:35,312 copying build/lib/starfish/core/imagestack/imagestack.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2025-11-25T08:32:35,315 copying build/lib/starfish/core/imagestack/indexing_utils.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2025-11-25T08:32:35,318 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser 2025-11-25T08:32:35,319 copying build/lib/starfish/core/imagestack/parser/_tiledata.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2025-11-25T08:32:35,322 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/xarray 2025-11-25T08:32:35,323 copying build/lib/starfish/core/imagestack/parser/xarray/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/xarray 2025-11-25T08:32:35,325 copying build/lib/starfish/core/imagestack/parser/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2025-11-25T08:32:35,327 copying build/lib/starfish/core/imagestack/parser/_key.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2025-11-25T08:32:35,329 copying build/lib/starfish/core/imagestack/parser/crop.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser 2025-11-25T08:32:35,332 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/numpy 2025-11-25T08:32:35,333 copying build/lib/starfish/core/imagestack/parser/numpy/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/numpy 2025-11-25T08:32:35,336 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tilefetcher 2025-11-25T08:32:35,337 copying build/lib/starfish/core/imagestack/parser/tilefetcher/_parser.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tilefetcher 2025-11-25T08:32:35,340 copying build/lib/starfish/core/imagestack/parser/tilefetcher/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tilefetcher 2025-11-25T08:32:35,342 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/parser/tileset 2025-11-25T08:32:35,343 copying build/lib/starfish/core/imagestack/parser/tileset/_parser.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tileset 2025-11-25T08:32:35,345 copying build/lib/starfish/core/imagestack/parser/tileset/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/parser/tileset 2025-11-25T08:32:35,347 copying build/lib/starfish/core/imagestack/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2025-11-25T08:32:35,350 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test 2025-11-25T08:32:35,351 copying build/lib/starfish/core/imagestack/test/test_labeled_indices.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,353 copying build/lib/starfish/core/imagestack/test/test_cropped_load.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,356 copying build/lib/starfish/core/imagestack/test/test_metadata.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,358 copying build/lib/starfish/core/imagestack/test/test_from_tilefetcher.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,359 copying build/lib/starfish/core/imagestack/test/test_index.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,362 copying build/lib/starfish/core/imagestack/test/test_max_proj.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,364 copying build/lib/starfish/core/imagestack/test/imagestack_test_utils.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,366 copying build/lib/starfish/core/imagestack/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,367 copying build/lib/starfish/core/imagestack/test/test_from_xarray.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,369 copying build/lib/starfish/core/imagestack/test/test_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,371 copying build/lib/starfish/core/imagestack/test/test_from_numpy_array.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,373 copying build/lib/starfish/core/imagestack/test/test_physical_coordinate_calculator.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,375 copying build/lib/starfish/core/imagestack/test/test_export.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,377 copying build/lib/starfish/core/imagestack/test/test_slicedimage_dtype.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,379 copying build/lib/starfish/core/imagestack/test/test_apply.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,382 creating build/bdist.linux-armv7l/wheel/starfish/core/imagestack/test/factories 2025-11-25T08:32:35,383 copying build/lib/starfish/core/imagestack/test/factories/with_coords.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2025-11-25T08:32:35,385 copying build/lib/starfish/core/imagestack/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2025-11-25T08:32:35,387 copying build/lib/starfish/core/imagestack/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2025-11-25T08:32:35,388 copying build/lib/starfish/core/imagestack/test/factories/from_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2025-11-25T08:32:35,390 copying build/lib/starfish/core/imagestack/test/factories/synthetic_stack.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2025-11-25T08:32:35,392 copying build/lib/starfish/core/imagestack/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test/factories 2025-11-25T08:32:35,393 copying build/lib/starfish/core/imagestack/test/test_slice_ops.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack/test 2025-11-25T08:32:35,396 copying build/lib/starfish/core/imagestack/physical_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/imagestack 2025-11-25T08:32:35,398 creating build/bdist.linux-armv7l/wheel/starfish/core/image 2025-11-25T08:32:35,400 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter 2025-11-25T08:32:35,401 copying build/lib/starfish/core/image/Filter/match_histograms.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,403 copying build/lib/starfish/core/image/Filter/mean_high_pass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,405 copying build/lib/starfish/core/image/Filter/gaussian_high_pass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,407 copying build/lib/starfish/core/image/Filter/ilastik_pre_trained_probability.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,409 copying build/lib/starfish/core/image/Filter/zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,411 copying build/lib/starfish/core/image/Filter/clip.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,413 copying build/lib/starfish/core/image/Filter/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,415 copying build/lib/starfish/core/image/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,416 copying build/lib/starfish/core/image/Filter/gaussian_low_pass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,418 copying build/lib/starfish/core/image/Filter/call_bases.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,421 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Filter/test 2025-11-25T08:32:35,422 copying build/lib/starfish/core/image/Filter/test/test_call_bases.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,424 copying build/lib/starfish/core/image/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,426 copying build/lib/starfish/core/image/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,428 copying build/lib/starfish/core/image/Filter/test/test_histogram_matching.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,429 copying build/lib/starfish/core/image/Filter/test/test_api_contract.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,431 copying build/lib/starfish/core/image/Filter/test/test_white_tophat.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,433 copying build/lib/starfish/core/image/Filter/test/test_linear_unmixing.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,435 copying build/lib/starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,436 copying build/lib/starfish/core/image/Filter/test/test_filter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,438 copying build/lib/starfish/core/image/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter/test 2025-11-25T08:32:35,440 copying build/lib/starfish/core/image/Filter/white_tophat.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,442 copying build/lib/starfish/core/image/Filter/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,444 copying build/lib/starfish/core/image/Filter/element_wise_mult.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,446 copying build/lib/starfish/core/image/Filter/map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,447 copying build/lib/starfish/core/image/Filter/bandpass.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,450 copying build/lib/starfish/core/image/Filter/clip_percentile_to_zero.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,452 copying build/lib/starfish/core/image/Filter/clip_value_to_zero.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,454 copying build/lib/starfish/core/image/Filter/richardson_lucy_deconvolution.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,456 copying build/lib/starfish/core/image/Filter/laplace.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,458 copying build/lib/starfish/core/image/Filter/linear_unmixing.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,460 copying build/lib/starfish/core/image/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Filter 2025-11-25T08:32:35,463 creating build/bdist.linux-armv7l/wheel/starfish/core/image/Segment 2025-11-25T08:32:35,464 copying build/lib/starfish/core/image/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Segment 2025-11-25T08:32:35,466 copying build/lib/starfish/core/image/Segment/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Segment 2025-11-25T08:32:35,467 copying build/lib/starfish/core/image/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/Segment 2025-11-25T08:32:35,469 copying build/lib/starfish/core/image/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image 2025-11-25T08:32:35,471 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration 2025-11-25T08:32:35,472 copying build/lib/starfish/core/image/_registration/_format.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration 2025-11-25T08:32:35,474 copying build/lib/starfish/core/image/_registration/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration 2025-11-25T08:32:35,476 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:35,477 copying build/lib/starfish/core/image/_registration/ApplyTransform/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:35,479 copying build/lib/starfish/core/image/_registration/ApplyTransform/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:35,481 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/ApplyTransform/test 2025-11-25T08:32:35,482 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform/test 2025-11-25T08:32:35,484 copying build/lib/starfish/core/image/_registration/ApplyTransform/test/test_warp.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform/test 2025-11-25T08:32:35,485 copying build/lib/starfish/core/image/_registration/ApplyTransform/warp.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/ApplyTransform 2025-11-25T08:32:35,488 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/test 2025-11-25T08:32:35,489 copying build/lib/starfish/core/image/_registration/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/test 2025-11-25T08:32:35,491 copying build/lib/starfish/core/image/_registration/test/test_transforms_list.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/test 2025-11-25T08:32:35,492 copying build/lib/starfish/core/image/_registration/transforms_list.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration 2025-11-25T08:32:35,495 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:35,496 copying build/lib/starfish/core/image/_registration/LearnTransform/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:35,498 copying build/lib/starfish/core/image/_registration/LearnTransform/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:35,500 creating build/bdist.linux-armv7l/wheel/starfish/core/image/_registration/LearnTransform/test 2025-11-25T08:32:35,501 copying build/lib/starfish/core/image/_registration/LearnTransform/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform/test 2025-11-25T08:32:35,503 copying build/lib/starfish/core/image/_registration/LearnTransform/test/test_translation.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform/test 2025-11-25T08:32:35,505 copying build/lib/starfish/core/image/_registration/LearnTransform/translation.py -> build/bdist.linux-armv7l/wheel/./starfish/core/image/_registration/LearnTransform 2025-11-25T08:32:35,507 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook 2025-11-25T08:32:35,508 copying build/lib/starfish/core/codebook/codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook 2025-11-25T08:32:35,511 copying build/lib/starfish/core/codebook/_format.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook 2025-11-25T08:32:35,512 copying build/lib/starfish/core/codebook/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook 2025-11-25T08:32:35,514 creating build/bdist.linux-armv7l/wheel/starfish/core/codebook/test 2025-11-25T08:32:35,515 copying build/lib/starfish/core/codebook/test/test_to_json.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,517 copying build/lib/starfish/core/codebook/test/test_approximate_nearest_code.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,519 copying build/lib/starfish/core/codebook/test/test_code_length.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,521 copying build/lib/starfish/core/codebook/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,522 copying build/lib/starfish/core/codebook/test/test_from_code_array.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,524 copying build/lib/starfish/core/codebook/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,526 copying build/lib/starfish/core/codebook/test/test_synthetic_one_hot_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,528 copying build/lib/starfish/core/codebook/test/test_metric_decode.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,530 copying build/lib/starfish/core/codebook/test/test_normalize_code_traces.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,532 copying build/lib/starfish/core/codebook/test/test_per_round_max_decode.py -> build/bdist.linux-armv7l/wheel/./starfish/core/codebook/test 2025-11-25T08:32:35,534 creating build/bdist.linux-armv7l/wheel/starfish/core/config 2025-11-25T08:32:35,535 copying build/lib/starfish/core/config/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/config 2025-11-25T08:32:35,538 creating build/bdist.linux-armv7l/wheel/starfish/core/config/test 2025-11-25T08:32:35,539 copying build/lib/starfish/core/config/test/test_config.py -> build/bdist.linux-armv7l/wheel/./starfish/core/config/test 2025-11-25T08:32:35,541 copying build/lib/starfish/core/config/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/config/test 2025-11-25T08:32:35,543 copying build/lib/starfish/core/_display.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2025-11-25T08:32:35,545 copying build/lib/starfish/core/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2025-11-25T08:32:35,547 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment 2025-11-25T08:32:35,549 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder 2025-11-25T08:32:35,550 copying build/lib/starfish/core/experiment/builder/builder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2025-11-25T08:32:35,553 copying build/lib/starfish/core/experiment/builder/providers.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2025-11-25T08:32:35,554 copying build/lib/starfish/core/experiment/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2025-11-25T08:32:35,556 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test 2025-11-25T08:32:35,557 copying build/lib/starfish/core/experiment/builder/test/test_orderediterator.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2025-11-25T08:32:35,560 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:35,561 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:35,563 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:35,564 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:35,566 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:35,568 copying build/lib/starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/structured_formatter 2025-11-25T08:32:35,570 copying build/lib/starfish/core/experiment/builder/test/test_inplace.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2025-11-25T08:32:35,572 copying build/lib/starfish/core/experiment/builder/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2025-11-25T08:32:35,574 copying build/lib/starfish/core/experiment/builder/test/test_small_axis.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test 2025-11-25T08:32:35,576 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/builder/test/factories 2025-11-25T08:32:35,577 copying build/lib/starfish/core/experiment/builder/test/factories/unique_tiles.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/factories 2025-11-25T08:32:35,579 copying build/lib/starfish/core/experiment/builder/test/factories/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/factories 2025-11-25T08:32:35,581 copying build/lib/starfish/core/experiment/builder/test/factories/all_purpose.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder/test/factories 2025-11-25T08:32:35,583 copying build/lib/starfish/core/experiment/builder/defaultproviders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2025-11-25T08:32:35,585 copying build/lib/starfish/core/experiment/builder/inplace.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2025-11-25T08:32:35,587 copying build/lib/starfish/core/experiment/builder/structured_formatter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2025-11-25T08:32:35,589 copying build/lib/starfish/core/experiment/builder/orderediterator.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/builder 2025-11-25T08:32:35,591 copying build/lib/starfish/core/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment 2025-11-25T08:32:35,593 copying build/lib/starfish/core/experiment/experiment.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment 2025-11-25T08:32:35,596 creating build/bdist.linux-armv7l/wheel/starfish/core/experiment/test 2025-11-25T08:32:35,597 copying build/lib/starfish/core/experiment/test/test_version.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/test 2025-11-25T08:32:35,599 copying build/lib/starfish/core/experiment/test/test_get_image_repr_warning.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/test 2025-11-25T08:32:35,601 copying build/lib/starfish/core/experiment/test/test_experiment.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/test 2025-11-25T08:32:35,603 copying build/lib/starfish/core/experiment/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment/test 2025-11-25T08:32:35,605 copying build/lib/starfish/core/experiment/version.py -> build/bdist.linux-armv7l/wheel/./starfish/core/experiment 2025-11-25T08:32:35,607 creating build/bdist.linux-armv7l/wheel/starfish/core/util 2025-11-25T08:32:35,608 copying build/lib/starfish/core/util/logging.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,610 copying build/lib/starfish/core/util/exec.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,611 copying build/lib/starfish/core/util/argparse.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,613 copying build/lib/starfish/core/util/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,615 creating build/bdist.linux-armv7l/wheel/starfish/core/util/click 2025-11-25T08:32:35,616 copying build/lib/starfish/core/util/click/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/click 2025-11-25T08:32:35,618 copying build/lib/starfish/core/util/clock.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,620 copying build/lib/starfish/core/util/enum.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,622 creating build/bdist.linux-armv7l/wheel/starfish/core/util/test 2025-11-25T08:32:35,623 copying build/lib/starfish/core/util/test/test_preserve_float_range.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/test 2025-11-25T08:32:35,626 copying build/lib/starfish/core/util/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/test 2025-11-25T08:32:35,627 copying build/lib/starfish/core/util/test/test_levels.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util/test 2025-11-25T08:32:35,630 copying build/lib/starfish/core/util/config.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,632 copying build/lib/starfish/core/util/levels.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,634 copying build/lib/starfish/core/util/try_import.py -> build/bdist.linux-armv7l/wheel/./starfish/core/util 2025-11-25T08:32:35,636 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology 2025-11-25T08:32:35,638 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter 2025-11-25T08:32:35,639 copying build/lib/starfish/core/morphology/Filter/structural_label.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2025-11-25T08:32:35,641 copying build/lib/starfish/core/morphology/Filter/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2025-11-25T08:32:35,643 copying build/lib/starfish/core/morphology/Filter/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2025-11-25T08:32:35,645 copying build/lib/starfish/core/morphology/Filter/areafilter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2025-11-25T08:32:35,647 copying build/lib/starfish/core/morphology/Filter/min_distance_label.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2025-11-25T08:32:35,649 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Filter/test 2025-11-25T08:32:35,650 copying build/lib/starfish/core/morphology/Filter/test/test_reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2025-11-25T08:32:35,653 copying build/lib/starfish/core/morphology/Filter/test/test_areafilter.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2025-11-25T08:32:35,655 copying build/lib/starfish/core/morphology/Filter/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2025-11-25T08:32:35,657 copying build/lib/starfish/core/morphology/Filter/test/test_map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter/test 2025-11-25T08:32:35,659 copying build/lib/starfish/core/morphology/Filter/map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2025-11-25T08:32:35,661 copying build/lib/starfish/core/morphology/Filter/reduce.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Filter 2025-11-25T08:32:35,663 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Segment 2025-11-25T08:32:35,664 copying build/lib/starfish/core/morphology/Segment/watershed.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Segment 2025-11-25T08:32:35,666 copying build/lib/starfish/core/morphology/Segment/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Segment 2025-11-25T08:32:35,667 copying build/lib/starfish/core/morphology/Segment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Segment 2025-11-25T08:32:35,670 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image 2025-11-25T08:32:35,671 copying build/lib/starfish/core/morphology/label_image/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image 2025-11-25T08:32:35,673 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/label_image/test 2025-11-25T08:32:35,674 copying build/lib/starfish/core/morphology/label_image/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image/test 2025-11-25T08:32:35,676 copying build/lib/starfish/core/morphology/label_image/test/test_label_image.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image/test 2025-11-25T08:32:35,679 copying build/lib/starfish/core/morphology/label_image/label_image.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/label_image 2025-11-25T08:32:35,681 copying build/lib/starfish/core/morphology/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology 2025-11-25T08:32:35,683 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize 2025-11-25T08:32:35,685 copying build/lib/starfish/core/morphology/Binarize/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize 2025-11-25T08:32:35,686 copying build/lib/starfish/core/morphology/Binarize/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize 2025-11-25T08:32:35,688 copying build/lib/starfish/core/morphology/Binarize/threshold.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize 2025-11-25T08:32:35,691 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Binarize/test 2025-11-25T08:32:35,692 copying build/lib/starfish/core/morphology/Binarize/test/test_threshold.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize/test 2025-11-25T08:32:35,694 copying build/lib/starfish/core/morphology/Binarize/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Binarize/test 2025-11-25T08:32:35,695 copying build/lib/starfish/core/morphology/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology 2025-11-25T08:32:35,698 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge 2025-11-25T08:32:35,699 copying build/lib/starfish/core/morphology/Merge/simple.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge 2025-11-25T08:32:35,701 copying build/lib/starfish/core/morphology/Merge/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge 2025-11-25T08:32:35,703 copying build/lib/starfish/core/morphology/Merge/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge 2025-11-25T08:32:35,705 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/Merge/test 2025-11-25T08:32:35,707 copying build/lib/starfish/core/morphology/Merge/test/test_simple.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge/test 2025-11-25T08:32:35,709 copying build/lib/starfish/core/morphology/Merge/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/Merge/test 2025-11-25T08:32:35,711 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask 2025-11-25T08:32:35,712 copying build/lib/starfish/core/morphology/binary_mask/_io.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2025-11-25T08:32:35,714 copying build/lib/starfish/core/morphology/binary_mask/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2025-11-25T08:32:35,716 copying build/lib/starfish/core/morphology/binary_mask/binary_mask.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2025-11-25T08:32:35,719 creating build/bdist.linux-armv7l/wheel/starfish/core/morphology/binary_mask/test 2025-11-25T08:32:35,720 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2025-11-25T08:32:35,723 copying build/lib/starfish/core/morphology/binary_mask/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2025-11-25T08:32:35,725 copying build/lib/starfish/core/morphology/binary_mask/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2025-11-25T08:32:35,727 copying build/lib/starfish/core/morphology/binary_mask/test/test_binary_mask.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2025-11-25T08:32:35,729 copying build/lib/starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2025-11-25T08:32:35,731 copying build/lib/starfish/core/morphology/binary_mask/test/test_expand.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask/test 2025-11-25T08:32:35,733 copying build/lib/starfish/core/morphology/binary_mask/expand.py -> build/bdist.linux-armv7l/wheel/./starfish/core/morphology/binary_mask 2025-11-25T08:32:35,736 creating build/bdist.linux-armv7l/wheel/starfish/core/spots 2025-11-25T08:32:35,737 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels 2025-11-25T08:32:35,739 copying build/lib/starfish/core/spots/DetectPixels/pixel_spot_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2025-11-25T08:32:35,741 copying build/lib/starfish/core/spots/DetectPixels/combine_adjacent_features.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2025-11-25T08:32:35,743 copying build/lib/starfish/core/spots/DetectPixels/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2025-11-25T08:32:35,745 copying build/lib/starfish/core/spots/DetectPixels/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels 2025-11-25T08:32:35,747 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DetectPixels/test 2025-11-25T08:32:35,748 copying build/lib/starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2025-11-25T08:32:35,751 copying build/lib/starfish/core/spots/DetectPixels/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2025-11-25T08:32:35,752 copying build/lib/starfish/core/spots/DetectPixels/test/test_targets_map.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2025-11-25T08:32:35,754 copying build/lib/starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2025-11-25T08:32:35,756 copying build/lib/starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DetectPixels/test 2025-11-25T08:32:35,758 copying build/lib/starfish/core/spots/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots 2025-11-25T08:32:35,761 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots 2025-11-25T08:32:35,762 copying build/lib/starfish/core/spots/FindSpots/local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2025-11-25T08:32:35,764 copying build/lib/starfish/core/spots/FindSpots/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2025-11-25T08:32:35,766 copying build/lib/starfish/core/spots/FindSpots/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2025-11-25T08:32:35,768 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/FindSpots/test 2025-11-25T08:32:35,769 copying build/lib/starfish/core/spots/FindSpots/test/test_synthetic_data.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2025-11-25T08:32:35,771 copying build/lib/starfish/core/spots/FindSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2025-11-25T08:32:35,773 copying build/lib/starfish/core/spots/FindSpots/test/test_spot_detection.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2025-11-25T08:32:35,775 copying build/lib/starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots/test 2025-11-25T08:32:35,777 copying build/lib/starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2025-11-25T08:32:35,779 copying build/lib/starfish/core/spots/FindSpots/blob.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2025-11-25T08:32:35,781 copying build/lib/starfish/core/spots/FindSpots/spot_finding_utils.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/FindSpots 2025-11-25T08:32:35,784 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,785 copying build/lib/starfish/core/spots/DecodeSpots/simple_lookup_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,787 copying build/lib/starfish/core/spots/DecodeSpots/trace_builders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,789 copying build/lib/starfish/core/spots/DecodeSpots/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,791 copying build/lib/starfish/core/spots/DecodeSpots/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,793 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,794 copying build/lib/starfish/core/spots/DecodeSpots/test/test_spot_finders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,796 copying build/lib/starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,798 copying build/lib/starfish/core/spots/DecodeSpots/test/test_trace_builders.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,800 copying build/lib/starfish/core/spots/DecodeSpots/test/test_check_all.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,803 copying build/lib/starfish/core/spots/DecodeSpots/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,805 copying build/lib/starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,807 copying build/lib/starfish/core/spots/DecodeSpots/test/test_metric_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,809 copying build/lib/starfish/core/spots/DecodeSpots/test/test_composite_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots/test 2025-11-25T08:32:35,812 copying build/lib/starfish/core/spots/DecodeSpots/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,815 copying build/lib/starfish/core/spots/DecodeSpots/metric_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,817 copying build/lib/starfish/core/spots/DecodeSpots/check_all_funcs.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,820 copying build/lib/starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,822 copying build/lib/starfish/core/spots/DecodeSpots/check_all_decoder.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/DecodeSpots 2025-11-25T08:32:35,825 creating build/bdist.linux-armv7l/wheel/starfish/core/spots/AssignTargets 2025-11-25T08:32:35,826 copying build/lib/starfish/core/spots/AssignTargets/_base.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/AssignTargets 2025-11-25T08:32:35,828 copying build/lib/starfish/core/spots/AssignTargets/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/AssignTargets 2025-11-25T08:32:35,830 copying build/lib/starfish/core/spots/AssignTargets/label.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spots/AssignTargets 2025-11-25T08:32:35,832 creating build/bdist.linux-armv7l/wheel/starfish/core/spacetx_format 2025-11-25T08:32:35,833 copying build/lib/starfish/core/spacetx_format/test_codebook.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,835 copying build/lib/starfish/core/spacetx_format/test_experiment.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,837 copying build/lib/starfish/core/spacetx_format/validate_sptx.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,839 copying build/lib/starfish/core/spacetx_format/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,841 copying build/lib/starfish/core/spacetx_format/test_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,843 copying build/lib/starfish/core/spacetx_format/test_fov_manifest.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,844 copying build/lib/starfish/core/spacetx_format/test_fuzz.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,846 copying build/lib/starfish/core/spacetx_format/util.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,849 copying build/lib/starfish/core/spacetx_format/test_field_of_view.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,851 copying build/lib/starfish/core/spacetx_format/cli.py -> build/bdist.linux-armv7l/wheel/./starfish/core/spacetx_format 2025-11-25T08:32:35,853 creating build/bdist.linux-armv7l/wheel/starfish/core/test 2025-11-25T08:32:35,855 copying build/lib/starfish/core/test/test_display.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2025-11-25T08:32:35,856 copying build/lib/starfish/core/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2025-11-25T08:32:35,858 copying build/lib/starfish/core/test/test_synthetic_spot_creation.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2025-11-25T08:32:35,860 copying build/lib/starfish/core/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2025-11-25T08:32:35,863 copying build/lib/starfish/core/test/test_multiprocessing_workflow.py -> build/bdist.linux-armv7l/wheel/./starfish/core/test 2025-11-25T08:32:35,866 creating build/bdist.linux-armv7l/wheel/starfish/core/types 2025-11-25T08:32:35,867 copying build/lib/starfish/core/types/_spot_finding_results.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2025-11-25T08:32:35,869 copying build/lib/starfish/core/types/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2025-11-25T08:32:35,871 copying build/lib/starfish/core/types/_functionsource.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2025-11-25T08:32:35,873 copying build/lib/starfish/core/types/_decoded_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2025-11-25T08:32:35,875 copying build/lib/starfish/core/types/_validated_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2025-11-25T08:32:35,877 creating build/bdist.linux-armv7l/wheel/starfish/core/types/test 2025-11-25T08:32:35,878 copying build/lib/starfish/core/types/test/test_decoded_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types/test 2025-11-25T08:32:35,880 copying build/lib/starfish/core/types/test/test_saving_spots.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types/test 2025-11-25T08:32:35,882 copying build/lib/starfish/core/types/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types/test 2025-11-25T08:32:35,884 copying build/lib/starfish/core/types/_spot_attributes.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2025-11-25T08:32:35,885 copying build/lib/starfish/core/types/_constants.py -> build/bdist.linux-armv7l/wheel/./starfish/core/types 2025-11-25T08:32:35,887 copying build/lib/starfish/core/_version.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2025-11-25T08:32:35,889 copying build/lib/starfish/core/errors.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2025-11-25T08:32:35,891 creating build/bdist.linux-armv7l/wheel/starfish/core/pipeline 2025-11-25T08:32:35,892 copying build/lib/starfish/core/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/pipeline 2025-11-25T08:32:35,894 copying build/lib/starfish/core/pipeline/algorithmbase.py -> build/bdist.linux-armv7l/wheel/./starfish/core/pipeline 2025-11-25T08:32:35,897 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table 2025-11-25T08:32:35,898 copying build/lib/starfish/core/intensity_table/concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2025-11-25T08:32:35,901 copying build/lib/starfish/core/intensity_table/overlap.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2025-11-25T08:32:35,903 copying build/lib/starfish/core/intensity_table/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2025-11-25T08:32:35,905 copying build/lib/starfish/core/intensity_table/intensity_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2025-11-25T08:32:35,907 copying build/lib/starfish/core/intensity_table/intensity_table_coordinates.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2025-11-25T08:32:35,910 creating build/bdist.linux-armv7l/wheel/starfish/core/intensity_table/test 2025-11-25T08:32:35,911 copying build/lib/starfish/core/intensity_table/test/test_empty_intensity_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,913 copying build/lib/starfish/core/intensity_table/test/test_synthetic_intensities.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,915 copying build/lib/starfish/core/intensity_table/test/test_from_spot_data.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,917 copying build/lib/starfish/core/intensity_table/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,918 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_serialization.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,920 copying build/lib/starfish/core/intensity_table/test/test_intensity_table_coords.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,923 copying build/lib/starfish/core/intensity_table/test/test_to_mermaid.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,925 copying build/lib/starfish/core/intensity_table/test/test_from_imagestack.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,927 copying build/lib/starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,929 copying build/lib/starfish/core/intensity_table/test/test_overlap.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,931 copying build/lib/starfish/core/intensity_table/test/factories.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,932 copying build/lib/starfish/core/intensity_table/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table/test 2025-11-25T08:32:35,934 copying build/lib/starfish/core/intensity_table/decoded_intensity_table.py -> build/bdist.linux-armv7l/wheel/./starfish/core/intensity_table 2025-11-25T08:32:35,937 creating build/bdist.linux-armv7l/wheel/starfish/core/segmentation_mask 2025-11-25T08:32:35,938 copying build/lib/starfish/core/segmentation_mask/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/segmentation_mask 2025-11-25T08:32:35,940 copying build/lib/starfish/core/segmentation_mask/segmentation_mask.py -> build/bdist.linux-armv7l/wheel/./starfish/core/segmentation_mask 2025-11-25T08:32:35,942 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix 2025-11-25T08:32:35,943 copying build/lib/starfish/core/expression_matrix/concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix 2025-11-25T08:32:35,945 copying build/lib/starfish/core/expression_matrix/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix 2025-11-25T08:32:35,947 creating build/bdist.linux-armv7l/wheel/starfish/core/expression_matrix/test 2025-11-25T08:32:35,948 copying build/lib/starfish/core/expression_matrix/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix/test 2025-11-25T08:32:35,950 copying build/lib/starfish/core/expression_matrix/test/test_serialization.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix/test 2025-11-25T08:32:35,951 copying build/lib/starfish/core/expression_matrix/test/test_concatenate.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix/test 2025-11-25T08:32:35,953 copying build/lib/starfish/core/expression_matrix/expression_matrix.py -> build/bdist.linux-armv7l/wheel/./starfish/core/expression_matrix 2025-11-25T08:32:35,955 copying build/lib/starfish/core/starfish.py -> build/bdist.linux-armv7l/wheel/./starfish/core 2025-11-25T08:32:35,957 copying build/lib/starfish/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:35,959 copying build/lib/starfish/morphology.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:35,961 creating build/bdist.linux-armv7l/wheel/starfish/experiment 2025-11-25T08:32:35,962 copying build/lib/starfish/experiment/builder.py -> build/bdist.linux-armv7l/wheel/./starfish/experiment 2025-11-25T08:32:35,964 copying build/lib/starfish/experiment/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/experiment 2025-11-25T08:32:35,966 creating build/bdist.linux-armv7l/wheel/starfish/util 2025-11-25T08:32:35,967 copying build/lib/starfish/util/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/util 2025-11-25T08:32:35,969 copying build/lib/starfish/util/plot.py -> build/bdist.linux-armv7l/wheel/./starfish/util 2025-11-25T08:32:35,971 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format 2025-11-25T08:32:35,973 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples 2025-11-25T08:32:35,975 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,976 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,978 copying build/lib/starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,979 copying build/lib/starfish/spacetx_format/examples/codebook/codebook.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/codebook 2025-11-25T08:32:35,981 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,982 copying build/lib/starfish/spacetx_format/examples/experiment/experiment.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,984 copying build/lib/starfish/spacetx_format/examples/experiment/dartfish_experiment.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,986 copying build/lib/starfish/spacetx_format/examples/experiment/no_fov_manifest.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/experiment 2025-11-25T08:32:35,988 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/fov_manifest 2025-11-25T08:32:35,989 copying build/lib/starfish/spacetx_format/examples/fov_manifest/fov_manifest.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/fov_manifest 2025-11-25T08:32:35,991 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,992 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,994 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,996 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:35,998 copying build/lib/starfish/spacetx_format/examples/field_of_view/field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,000 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,002 copying build/lib/starfish/spacetx_format/examples/field_of_view/too_large.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,003 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,005 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,007 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,009 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,011 copying build/lib/starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,012 copying build/lib/starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/examples/field_of_view 2025-11-25T08:32:36,015 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema 2025-11-25T08:32:36,016 copying build/lib/starfish/spacetx_format/schema/experiment_5.0.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2025-11-25T08:32:36,018 copying build/lib/starfish/spacetx_format/schema/version.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2025-11-25T08:32:36,019 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.0.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2025-11-25T08:32:36,021 copying build/lib/starfish/spacetx_format/schema/experiment_4.0.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2025-11-25T08:32:36,023 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0 2025-11-25T08:32:36,025 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:36,026 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:36,028 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:36,030 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0/tiles 2025-11-25T08:32:36,032 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.1.0 2025-11-25T08:32:36,034 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/codebook_0.0.0 2025-11-25T08:32:36,035 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codeword.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/codebook_0.0.0 2025-11-25T08:32:36,037 copying build/lib/starfish/spacetx_format/schema/codebook_0.0.0/codebook.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/codebook_0.0.0 2025-11-25T08:32:36,040 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0 2025-11-25T08:32:36,041 creating build/bdist.linux-armv7l/wheel/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:36,042 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:36,044 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:36,046 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0/tiles 2025-11-25T08:32:36,048 copying build/lib/starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema/field_of_view_0.0.0 2025-11-25T08:32:36,050 copying build/lib/starfish/spacetx_format/schema/extras.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2025-11-25T08:32:36,052 copying build/lib/starfish/spacetx_format/schema/fov_manifest_0.1.0.json -> build/bdist.linux-armv7l/wheel/./starfish/spacetx_format/schema 2025-11-25T08:32:36,053 copying build/lib/starfish/types.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:36,056 creating build/bdist.linux-armv7l/wheel/starfish/test 2025-11-25T08:32:36,057 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines 2025-11-25T08:32:36,059 creating build/bdist.linux-armv7l/wheel/starfish/test/full_pipelines/api 2025-11-25T08:32:36,060 copying build/lib/starfish/test/full_pipelines/api/test_merfish.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2025-11-25T08:32:36,063 copying build/lib/starfish/test/full_pipelines/api/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2025-11-25T08:32:36,065 copying build/lib/starfish/test/full_pipelines/api/test_allen_smFISH.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2025-11-25T08:32:36,066 copying build/lib/starfish/test/full_pipelines/api/test_iss_doc_pipeline.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2025-11-25T08:32:36,068 copying build/lib/starfish/test/full_pipelines/api/test_dartfish.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2025-11-25T08:32:36,070 copying build/lib/starfish/test/full_pipelines/api/test_iss_api.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines/api 2025-11-25T08:32:36,073 copying build/lib/starfish/test/full_pipelines/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/test/full_pipelines 2025-11-25T08:32:36,074 copying build/lib/starfish/test/__init__.py -> build/bdist.linux-armv7l/wheel/./starfish/test 2025-11-25T08:32:36,076 copying build/lib/starfish/config.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:36,078 copying build/lib/starfish/REQUIREMENTS-STRICT.txt -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:36,080 copying build/lib/starfish/__main__.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:36,081 copying build/lib/starfish/spots.py -> build/bdist.linux-armv7l/wheel/./starfish 2025-11-25T08:32:36,083 running install_egg_info 2025-11-25T08:32:36,089 Copying starfish.egg-info to build/bdist.linux-armv7l/wheel/./starfish-0.3.4-py3.11.egg-info 2025-11-25T08:32:36,102 running install_scripts 2025-11-25T08:32:36,114 creating build/bdist.linux-armv7l/wheel/starfish-0.3.4.dist-info/WHEEL 2025-11-25T08:32:36,117 creating '/tmp/pip-wheel-obpsxr6x/.tmp-vaqldnnn/starfish-0.3.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-25T08:32:36,119 adding 'starfish/REQUIREMENTS-STRICT.txt' 2025-11-25T08:32:36,120 adding 'starfish/__init__.py' 2025-11-25T08:32:36,121 adding 'starfish/__main__.py' 2025-11-25T08:32:36,122 adding 'starfish/config.py' 2025-11-25T08:32:36,124 adding 'starfish/data.py' 2025-11-25T08:32:36,125 adding 'starfish/image.py' 2025-11-25T08:32:36,126 adding 'starfish/morphology.py' 2025-11-25T08:32:36,128 adding 'starfish/spots.py' 2025-11-25T08:32:36,129 adding 'starfish/test.py' 2025-11-25T08:32:36,130 adding 'starfish/types.py' 2025-11-25T08:32:36,132 adding 'starfish/core/__init__.py' 2025-11-25T08:32:36,134 adding 'starfish/core/_display.py' 2025-11-25T08:32:36,135 adding 'starfish/core/_version.py' 2025-11-25T08:32:36,136 adding 'starfish/core/errors.py' 2025-11-25T08:32:36,138 adding 'starfish/core/starfish.py' 2025-11-25T08:32:36,139 adding 'starfish/core/codebook/__init__.py' 2025-11-25T08:32:36,140 adding 'starfish/core/codebook/_format.py' 2025-11-25T08:32:36,144 adding 'starfish/core/codebook/codebook.py' 2025-11-25T08:32:36,146 adding 'starfish/core/codebook/test/__init__.py' 2025-11-25T08:32:36,147 adding 'starfish/core/codebook/test/factories.py' 2025-11-25T08:32:36,149 adding 'starfish/core/codebook/test/test_approximate_nearest_code.py' 2025-11-25T08:32:36,150 adding 'starfish/core/codebook/test/test_code_length.py' 2025-11-25T08:32:36,151 adding 'starfish/core/codebook/test/test_from_code_array.py' 2025-11-25T08:32:36,153 adding 'starfish/core/codebook/test/test_metric_decode.py' 2025-11-25T08:32:36,154 adding 'starfish/core/codebook/test/test_normalize_code_traces.py' 2025-11-25T08:32:36,156 adding 'starfish/core/codebook/test/test_per_round_max_decode.py' 2025-11-25T08:32:36,157 adding 'starfish/core/codebook/test/test_synthetic_one_hot_codebook.py' 2025-11-25T08:32:36,158 adding 'starfish/core/codebook/test/test_to_json.py' 2025-11-25T08:32:36,161 adding 'starfish/core/config/__init__.py' 2025-11-25T08:32:36,162 adding 'starfish/core/config/test/__init__.py' 2025-11-25T08:32:36,164 adding 'starfish/core/config/test/test_config.py' 2025-11-25T08:32:36,166 adding 'starfish/core/experiment/__init__.py' 2025-11-25T08:32:36,168 adding 'starfish/core/experiment/experiment.py' 2025-11-25T08:32:36,169 adding 'starfish/core/experiment/version.py' 2025-11-25T08:32:36,170 adding 'starfish/core/experiment/builder/__init__.py' 2025-11-25T08:32:36,173 adding 'starfish/core/experiment/builder/builder.py' 2025-11-25T08:32:36,174 adding 'starfish/core/experiment/builder/defaultproviders.py' 2025-11-25T08:32:36,175 adding 'starfish/core/experiment/builder/inplace.py' 2025-11-25T08:32:36,176 adding 'starfish/core/experiment/builder/orderediterator.py' 2025-11-25T08:32:36,177 adding 'starfish/core/experiment/builder/providers.py' 2025-11-25T08:32:36,179 adding 'starfish/core/experiment/builder/structured_formatter.py' 2025-11-25T08:32:36,181 adding 'starfish/core/experiment/builder/test/__init__.py' 2025-11-25T08:32:36,183 adding 'starfish/core/experiment/builder/test/test_inplace.py' 2025-11-25T08:32:36,184 adding 'starfish/core/experiment/builder/test/test_orderediterator.py' 2025-11-25T08:32:36,185 adding 'starfish/core/experiment/builder/test/test_small_axis.py' 2025-11-25T08:32:36,187 adding 'starfish/core/experiment/builder/test/factories/__init__.py' 2025-11-25T08:32:36,188 adding 'starfish/core/experiment/builder/test/factories/all_purpose.py' 2025-11-25T08:32:36,189 adding 'starfish/core/experiment/builder/test/factories/unique_tiles.py' 2025-11-25T08:32:36,191 adding 'starfish/core/experiment/builder/test/structured_formatter/__init__.py' 2025-11-25T08:32:36,192 adding 'starfish/core/experiment/builder/test/structured_formatter/test_multiple_fov.py' 2025-11-25T08:32:36,194 adding 'starfish/core/experiment/builder/test/structured_formatter/test_single_fov.py' 2025-11-25T08:32:36,196 adding 'starfish/core/experiment/builder/test/structured_formatter/test_tilepath.py' 2025-11-25T08:32:36,197 adding 'starfish/core/experiment/builder/test/structured_formatter/util.py' 2025-11-25T08:32:36,199 adding 'starfish/core/experiment/test/__init__.py' 2025-11-25T08:32:36,200 adding 'starfish/core/experiment/test/test_experiment.py' 2025-11-25T08:32:36,202 adding 'starfish/core/experiment/test/test_get_image_repr_warning.py' 2025-11-25T08:32:36,203 adding 'starfish/core/experiment/test/test_version.py' 2025-11-25T08:32:36,205 adding 'starfish/core/expression_matrix/__init__.py' 2025-11-25T08:32:36,206 adding 'starfish/core/expression_matrix/concatenate.py' 2025-11-25T08:32:36,207 adding 'starfish/core/expression_matrix/expression_matrix.py' 2025-11-25T08:32:36,209 adding 'starfish/core/expression_matrix/test/__init__.py' 2025-11-25T08:32:36,210 adding 'starfish/core/expression_matrix/test/test_concatenate.py' 2025-11-25T08:32:36,211 adding 'starfish/core/expression_matrix/test/test_serialization.py' 2025-11-25T08:32:36,213 adding 'starfish/core/image/__init__.py' 2025-11-25T08:32:36,215 adding 'starfish/core/image/Filter/__init__.py' 2025-11-25T08:32:36,216 adding 'starfish/core/image/Filter/_base.py' 2025-11-25T08:32:36,218 adding 'starfish/core/image/Filter/bandpass.py' 2025-11-25T08:32:36,219 adding 'starfish/core/image/Filter/call_bases.py' 2025-11-25T08:32:36,221 adding 'starfish/core/image/Filter/clip.py' 2025-11-25T08:32:36,223 adding 'starfish/core/image/Filter/clip_percentile_to_zero.py' 2025-11-25T08:32:36,224 adding 'starfish/core/image/Filter/clip_value_to_zero.py' 2025-11-25T08:32:36,225 adding 'starfish/core/image/Filter/element_wise_mult.py' 2025-11-25T08:32:36,227 adding 'starfish/core/image/Filter/gaussian_high_pass.py' 2025-11-25T08:32:36,229 adding 'starfish/core/image/Filter/gaussian_low_pass.py' 2025-11-25T08:32:36,230 adding 'starfish/core/image/Filter/ilastik_pre_trained_probability.py' 2025-11-25T08:32:36,232 adding 'starfish/core/image/Filter/laplace.py' 2025-11-25T08:32:36,233 adding 'starfish/core/image/Filter/linear_unmixing.py' 2025-11-25T08:32:36,235 adding 'starfish/core/image/Filter/map.py' 2025-11-25T08:32:36,236 adding 'starfish/core/image/Filter/match_histograms.py' 2025-11-25T08:32:36,238 adding 'starfish/core/image/Filter/mean_high_pass.py' 2025-11-25T08:32:36,240 adding 'starfish/core/image/Filter/reduce.py' 2025-11-25T08:32:36,241 adding 'starfish/core/image/Filter/richardson_lucy_deconvolution.py' 2025-11-25T08:32:36,243 adding 'starfish/core/image/Filter/util.py' 2025-11-25T08:32:36,244 adding 'starfish/core/image/Filter/white_tophat.py' 2025-11-25T08:32:36,246 adding 'starfish/core/image/Filter/zero_by_channel_magnitude.py' 2025-11-25T08:32:36,247 adding 'starfish/core/image/Filter/test/__init__.py' 2025-11-25T08:32:36,249 adding 'starfish/core/image/Filter/test/test_api_contract.py' 2025-11-25T08:32:36,250 adding 'starfish/core/image/Filter/test/test_call_bases.py' 2025-11-25T08:32:36,252 adding 'starfish/core/image/Filter/test/test_filter.py' 2025-11-25T08:32:36,253 adding 'starfish/core/image/Filter/test/test_histogram_matching.py' 2025-11-25T08:32:36,254 adding 'starfish/core/image/Filter/test/test_linear_unmixing.py' 2025-11-25T08:32:36,255 adding 'starfish/core/image/Filter/test/test_map.py' 2025-11-25T08:32:36,257 adding 'starfish/core/image/Filter/test/test_reduce.py' 2025-11-25T08:32:36,258 adding 'starfish/core/image/Filter/test/test_white_tophat.py' 2025-11-25T08:32:36,260 adding 'starfish/core/image/Filter/test/test_zero_by_channel_magnitude.py' 2025-11-25T08:32:36,262 adding 'starfish/core/image/Segment/__init__.py' 2025-11-25T08:32:36,263 adding 'starfish/core/image/Segment/_base.py' 2025-11-25T08:32:36,265 adding 'starfish/core/image/Segment/watershed.py' 2025-11-25T08:32:36,266 adding 'starfish/core/image/_registration/__init__.py' 2025-11-25T08:32:36,268 adding 'starfish/core/image/_registration/_format.py' 2025-11-25T08:32:36,269 adding 'starfish/core/image/_registration/transforms_list.py' 2025-11-25T08:32:36,271 adding 'starfish/core/image/_registration/ApplyTransform/__init__.py' 2025-11-25T08:32:36,272 adding 'starfish/core/image/_registration/ApplyTransform/_base.py' 2025-11-25T08:32:36,274 adding 'starfish/core/image/_registration/ApplyTransform/warp.py' 2025-11-25T08:32:36,275 adding 'starfish/core/image/_registration/ApplyTransform/test/__init__.py' 2025-11-25T08:32:36,277 adding 'starfish/core/image/_registration/ApplyTransform/test/test_warp.py' 2025-11-25T08:32:36,279 adding 'starfish/core/image/_registration/LearnTransform/__init__.py' 2025-11-25T08:32:36,280 adding 'starfish/core/image/_registration/LearnTransform/_base.py' 2025-11-25T08:32:36,281 adding 'starfish/core/image/_registration/LearnTransform/translation.py' 2025-11-25T08:32:36,283 adding 'starfish/core/image/_registration/LearnTransform/test/__init__.py' 2025-11-25T08:32:36,285 adding 'starfish/core/image/_registration/LearnTransform/test/test_translation.py' 2025-11-25T08:32:36,286 adding 'starfish/core/image/_registration/test/__init__.py' 2025-11-25T08:32:36,288 adding 'starfish/core/image/_registration/test/test_transforms_list.py' 2025-11-25T08:32:36,290 adding 'starfish/core/imagestack/__init__.py' 2025-11-25T08:32:36,291 adding 'starfish/core/imagestack/dataorder.py' 2025-11-25T08:32:36,297 adding 'starfish/core/imagestack/imagestack.py' 2025-11-25T08:32:36,299 adding 'starfish/core/imagestack/indexing_utils.py' 2025-11-25T08:32:36,300 adding 'starfish/core/imagestack/physical_coordinates.py' 2025-11-25T08:32:36,302 adding 'starfish/core/imagestack/parser/__init__.py' 2025-11-25T08:32:36,303 adding 'starfish/core/imagestack/parser/_key.py' 2025-11-25T08:32:36,305 adding 'starfish/core/imagestack/parser/_tiledata.py' 2025-11-25T08:32:36,307 adding 'starfish/core/imagestack/parser/crop.py' 2025-11-25T08:32:36,309 adding 'starfish/core/imagestack/parser/numpy/__init__.py' 2025-11-25T08:32:36,311 adding 'starfish/core/imagestack/parser/tilefetcher/__init__.py' 2025-11-25T08:32:36,312 adding 'starfish/core/imagestack/parser/tilefetcher/_parser.py' 2025-11-25T08:32:36,314 adding 'starfish/core/imagestack/parser/tileset/__init__.py' 2025-11-25T08:32:36,316 adding 'starfish/core/imagestack/parser/tileset/_parser.py' 2025-11-25T08:32:36,318 adding 'starfish/core/imagestack/parser/xarray/__init__.py' 2025-11-25T08:32:36,319 adding 'starfish/core/imagestack/test/__init__.py' 2025-11-25T08:32:36,321 adding 'starfish/core/imagestack/test/imagestack_test_utils.py' 2025-11-25T08:32:36,322 adding 'starfish/core/imagestack/test/test_apply.py' 2025-11-25T08:32:36,324 adding 'starfish/core/imagestack/test/test_coordinates.py' 2025-11-25T08:32:36,325 adding 'starfish/core/imagestack/test/test_cropped_load.py' 2025-11-25T08:32:36,326 adding 'starfish/core/imagestack/test/test_export.py' 2025-11-25T08:32:36,328 adding 'starfish/core/imagestack/test/test_from_numpy_array.py' 2025-11-25T08:32:36,329 adding 'starfish/core/imagestack/test/test_from_tilefetcher.py' 2025-11-25T08:32:36,331 adding 'starfish/core/imagestack/test/test_from_xarray.py' 2025-11-25T08:32:36,332 adding 'starfish/core/imagestack/test/test_index.py' 2025-11-25T08:32:36,334 adding 'starfish/core/imagestack/test/test_labeled_indices.py' 2025-11-25T08:32:36,335 adding 'starfish/core/imagestack/test/test_max_proj.py' 2025-11-25T08:32:36,337 adding 'starfish/core/imagestack/test/test_metadata.py' 2025-11-25T08:32:36,338 adding 'starfish/core/imagestack/test/test_physical_coordinate_calculator.py' 2025-11-25T08:32:36,339 adding 'starfish/core/imagestack/test/test_slice_ops.py' 2025-11-25T08:32:36,341 adding 'starfish/core/imagestack/test/test_slicedimage_dtype.py' 2025-11-25T08:32:36,343 adding 'starfish/core/imagestack/test/factories/__init__.py' 2025-11-25T08:32:36,344 adding 'starfish/core/imagestack/test/factories/all_purpose.py' 2025-11-25T08:32:36,345 adding 'starfish/core/imagestack/test/factories/from_codebook.py' 2025-11-25T08:32:36,346 adding 'starfish/core/imagestack/test/factories/synthetic_stack.py' 2025-11-25T08:32:36,348 adding 'starfish/core/imagestack/test/factories/unique_tiles.py' 2025-11-25T08:32:36,349 adding 'starfish/core/imagestack/test/factories/with_coords.py' 2025-11-25T08:32:36,351 adding 'starfish/core/intensity_table/__init__.py' 2025-11-25T08:32:36,352 adding 'starfish/core/intensity_table/concatenate.py' 2025-11-25T08:32:36,354 adding 'starfish/core/intensity_table/decoded_intensity_table.py' 2025-11-25T08:32:36,356 adding 'starfish/core/intensity_table/intensity_table.py' 2025-11-25T08:32:36,358 adding 'starfish/core/intensity_table/intensity_table_coordinates.py' 2025-11-25T08:32:36,359 adding 'starfish/core/intensity_table/overlap.py' 2025-11-25T08:32:36,361 adding 'starfish/core/intensity_table/test/__init__.py' 2025-11-25T08:32:36,363 adding 'starfish/core/intensity_table/test/factories.py' 2025-11-25T08:32:36,364 adding 'starfish/core/intensity_table/test/test_concatenate.py' 2025-11-25T08:32:36,365 adding 'starfish/core/intensity_table/test/test_empty_intensity_table.py' 2025-11-25T08:32:36,367 adding 'starfish/core/intensity_table/test/test_from_imagestack.py' 2025-11-25T08:32:36,369 adding 'starfish/core/intensity_table/test/test_from_spot_data.py' 2025-11-25T08:32:36,370 adding 'starfish/core/intensity_table/test/test_intensity_table_coords.py' 2025-11-25T08:32:36,371 adding 'starfish/core/intensity_table/test/test_intensity_table_serialization.py' 2025-11-25T08:32:36,373 adding 'starfish/core/intensity_table/test/test_overlap.py' 2025-11-25T08:32:36,374 adding 'starfish/core/intensity_table/test/test_stack_intensity_table_reshaping.py' 2025-11-25T08:32:36,375 adding 'starfish/core/intensity_table/test/test_synthetic_intensities.py' 2025-11-25T08:32:36,377 adding 'starfish/core/intensity_table/test/test_to_mermaid.py' 2025-11-25T08:32:36,379 adding 'starfish/core/morphology/__init__.py' 2025-11-25T08:32:36,380 adding 'starfish/core/morphology/util.py' 2025-11-25T08:32:36,382 adding 'starfish/core/morphology/Binarize/__init__.py' 2025-11-25T08:32:36,383 adding 'starfish/core/morphology/Binarize/_base.py' 2025-11-25T08:32:36,385 adding 'starfish/core/morphology/Binarize/threshold.py' 2025-11-25T08:32:36,386 adding 'starfish/core/morphology/Binarize/test/__init__.py' 2025-11-25T08:32:36,388 adding 'starfish/core/morphology/Binarize/test/test_threshold.py' 2025-11-25T08:32:36,390 adding 'starfish/core/morphology/Filter/__init__.py' 2025-11-25T08:32:36,391 adding 'starfish/core/morphology/Filter/_base.py' 2025-11-25T08:32:36,392 adding 'starfish/core/morphology/Filter/areafilter.py' 2025-11-25T08:32:36,393 adding 'starfish/core/morphology/Filter/map.py' 2025-11-25T08:32:36,395 adding 'starfish/core/morphology/Filter/min_distance_label.py' 2025-11-25T08:32:36,396 adding 'starfish/core/morphology/Filter/reduce.py' 2025-11-25T08:32:36,397 adding 'starfish/core/morphology/Filter/structural_label.py' 2025-11-25T08:32:36,399 adding 'starfish/core/morphology/Filter/test/__init__.py' 2025-11-25T08:32:36,400 adding 'starfish/core/morphology/Filter/test/test_areafilter.py' 2025-11-25T08:32:36,402 adding 'starfish/core/morphology/Filter/test/test_map.py' 2025-11-25T08:32:36,403 adding 'starfish/core/morphology/Filter/test/test_reduce.py' 2025-11-25T08:32:36,405 adding 'starfish/core/morphology/Merge/__init__.py' 2025-11-25T08:32:36,406 adding 'starfish/core/morphology/Merge/_base.py' 2025-11-25T08:32:36,407 adding 'starfish/core/morphology/Merge/simple.py' 2025-11-25T08:32:36,409 adding 'starfish/core/morphology/Merge/test/__init__.py' 2025-11-25T08:32:36,411 adding 'starfish/core/morphology/Merge/test/test_simple.py' 2025-11-25T08:32:36,412 adding 'starfish/core/morphology/Segment/__init__.py' 2025-11-25T08:32:36,414 adding 'starfish/core/morphology/Segment/_base.py' 2025-11-25T08:32:36,415 adding 'starfish/core/morphology/Segment/watershed.py' 2025-11-25T08:32:36,417 adding 'starfish/core/morphology/binary_mask/__init__.py' 2025-11-25T08:32:36,419 adding 'starfish/core/morphology/binary_mask/_io.py' 2025-11-25T08:32:36,422 adding 'starfish/core/morphology/binary_mask/binary_mask.py' 2025-11-25T08:32:36,423 adding 'starfish/core/morphology/binary_mask/expand.py' 2025-11-25T08:32:36,425 adding 'starfish/core/morphology/binary_mask/test/__init__.py' 2025-11-25T08:32:36,427 adding 'starfish/core/morphology/binary_mask/test/factories.py' 2025-11-25T08:32:36,428 adding 'starfish/core/morphology/binary_mask/test/test_binary_mask.py' 2025-11-25T08:32:36,430 adding 'starfish/core/morphology/binary_mask/test/test_expand.py' 2025-11-25T08:32:36,431 adding 'starfish/core/morphology/binary_mask/test/test_from_binary_arrays_and_ticks.py' 2025-11-25T08:32:36,433 adding 'starfish/core/morphology/binary_mask/test/test_from_label_array_and_ticks.py' 2025-11-25T08:32:36,434 adding 'starfish/core/morphology/label_image/__init__.py' 2025-11-25T08:32:36,436 adding 'starfish/core/morphology/label_image/label_image.py' 2025-11-25T08:32:36,438 adding 'starfish/core/morphology/label_image/test/__init__.py' 2025-11-25T08:32:36,439 adding 'starfish/core/morphology/label_image/test/test_label_image.py' 2025-11-25T08:32:36,441 adding 'starfish/core/pipeline/__init__.py' 2025-11-25T08:32:36,442 adding 'starfish/core/pipeline/algorithmbase.py' 2025-11-25T08:32:36,444 adding 'starfish/core/segmentation_mask/__init__.py' 2025-11-25T08:32:36,445 adding 'starfish/core/segmentation_mask/segmentation_mask.py' 2025-11-25T08:32:36,447 adding 'starfish/core/spacetx_format/__init__.py' 2025-11-25T08:32:36,449 adding 'starfish/core/spacetx_format/cli.py' 2025-11-25T08:32:36,450 adding 'starfish/core/spacetx_format/test_codebook.py' 2025-11-25T08:32:36,451 adding 'starfish/core/spacetx_format/test_coordinates.py' 2025-11-25T08:32:36,453 adding 'starfish/core/spacetx_format/test_experiment.py' 2025-11-25T08:32:36,454 adding 'starfish/core/spacetx_format/test_field_of_view.py' 2025-11-25T08:32:36,455 adding 'starfish/core/spacetx_format/test_fov_manifest.py' 2025-11-25T08:32:36,456 adding 'starfish/core/spacetx_format/test_fuzz.py' 2025-11-25T08:32:36,459 adding 'starfish/core/spacetx_format/util.py' 2025-11-25T08:32:36,461 adding 'starfish/core/spacetx_format/validate_sptx.py' 2025-11-25T08:32:36,462 adding 'starfish/core/spots/__init__.py' 2025-11-25T08:32:36,464 adding 'starfish/core/spots/AssignTargets/__init__.py' 2025-11-25T08:32:36,465 adding 'starfish/core/spots/AssignTargets/_base.py' 2025-11-25T08:32:36,466 adding 'starfish/core/spots/AssignTargets/label.py' 2025-11-25T08:32:36,468 adding 'starfish/core/spots/DecodeSpots/__init__.py' 2025-11-25T08:32:36,469 adding 'starfish/core/spots/DecodeSpots/_base.py' 2025-11-25T08:32:36,473 adding 'starfish/core/spots/DecodeSpots/check_all_decoder.py' 2025-11-25T08:32:36,477 adding 'starfish/core/spots/DecodeSpots/check_all_funcs.py' 2025-11-25T08:32:36,479 adding 'starfish/core/spots/DecodeSpots/metric_decoder.py' 2025-11-25T08:32:36,480 adding 'starfish/core/spots/DecodeSpots/per_round_max_channel_decoder.py' 2025-11-25T08:32:36,482 adding 'starfish/core/spots/DecodeSpots/simple_lookup_decoder.py' 2025-11-25T08:32:36,483 adding 'starfish/core/spots/DecodeSpots/trace_builders.py' 2025-11-25T08:32:36,485 adding 'starfish/core/spots/DecodeSpots/util.py' 2025-11-25T08:32:36,486 adding 'starfish/core/spots/DecodeSpots/test/__init__.py' 2025-11-25T08:32:36,488 adding 'starfish/core/spots/DecodeSpots/test/test_check_all.py' 2025-11-25T08:32:36,490 adding 'starfish/core/spots/DecodeSpots/test/test_composite_codebook.py' 2025-11-25T08:32:36,491 adding 'starfish/core/spots/DecodeSpots/test/test_decoding_without_spots.py' 2025-11-25T08:32:36,492 adding 'starfish/core/spots/DecodeSpots/test/test_metric_decoder.py' 2025-11-25T08:32:36,494 adding 'starfish/core/spots/DecodeSpots/test/test_nearest_neighbor_trace_builder.py' 2025-11-25T08:32:36,495 adding 'starfish/core/spots/DecodeSpots/test/test_spot_finders.py' 2025-11-25T08:32:36,496 adding 'starfish/core/spots/DecodeSpots/test/test_trace_builders.py' 2025-11-25T08:32:36,498 adding 'starfish/core/spots/DetectPixels/__init__.py' 2025-11-25T08:32:36,499 adding 'starfish/core/spots/DetectPixels/_base.py' 2025-11-25T08:32:36,502 adding 'starfish/core/spots/DetectPixels/combine_adjacent_features.py' 2025-11-25T08:32:36,503 adding 'starfish/core/spots/DetectPixels/pixel_spot_decoder.py' 2025-11-25T08:32:36,505 adding 'starfish/core/spots/DetectPixels/test/__init__.py' 2025-11-25T08:32:36,506 adding 'starfish/core/spots/DetectPixels/test/test_calculate_mean_pixel_traces.py' 2025-11-25T08:32:36,508 adding 'starfish/core/spots/DetectPixels/test/test_create_spot_attributes.py' 2025-11-25T08:32:36,509 adding 'starfish/core/spots/DetectPixels/test/test_intensities_to_decoded_image.py' 2025-11-25T08:32:36,510 adding 'starfish/core/spots/DetectPixels/test/test_targets_map.py' 2025-11-25T08:32:36,512 adding 'starfish/core/spots/FindSpots/__init__.py' 2025-11-25T08:32:36,514 adding 'starfish/core/spots/FindSpots/_base.py' 2025-11-25T08:32:36,516 adding 'starfish/core/spots/FindSpots/blob.py' 2025-11-25T08:32:36,518 adding 'starfish/core/spots/FindSpots/local_max_peak_finder.py' 2025-11-25T08:32:36,520 adding 'starfish/core/spots/FindSpots/spot_finding_utils.py' 2025-11-25T08:32:36,521 adding 'starfish/core/spots/FindSpots/trackpy_local_max_peak_finder.py' 2025-11-25T08:32:36,523 adding 'starfish/core/spots/FindSpots/test/__init__.py' 2025-11-25T08:32:36,524 adding 'starfish/core/spots/FindSpots/test/test_local_max_peak_finder.py' 2025-11-25T08:32:36,526 adding 'starfish/core/spots/FindSpots/test/test_spot_detection.py' 2025-11-25T08:32:36,528 adding 'starfish/core/spots/FindSpots/test/test_synthetic_data.py' 2025-11-25T08:32:36,530 adding 'starfish/core/test/__init__.py' 2025-11-25T08:32:36,532 adding 'starfish/core/test/factories.py' 2025-11-25T08:32:36,533 adding 'starfish/core/test/test_display.py' 2025-11-25T08:32:36,535 adding 'starfish/core/test/test_multiprocessing_workflow.py' 2025-11-25T08:32:36,536 adding 'starfish/core/test/test_synthetic_spot_creation.py' 2025-11-25T08:32:36,538 adding 'starfish/core/types/__init__.py' 2025-11-25T08:32:36,540 adding 'starfish/core/types/_constants.py' 2025-11-25T08:32:36,541 adding 'starfish/core/types/_decoded_spots.py' 2025-11-25T08:32:36,542 adding 'starfish/core/types/_functionsource.py' 2025-11-25T08:32:36,543 adding 'starfish/core/types/_spot_attributes.py' 2025-11-25T08:32:36,545 adding 'starfish/core/types/_spot_finding_results.py' 2025-11-25T08:32:36,546 adding 'starfish/core/types/_validated_table.py' 2025-11-25T08:32:36,548 adding 'starfish/core/types/test/__init__.py' 2025-11-25T08:32:36,549 adding 'starfish/core/types/test/test_decoded_spots.py' 2025-11-25T08:32:36,550 adding 'starfish/core/types/test/test_saving_spots.py' 2025-11-25T08:32:36,552 adding 'starfish/core/util/__init__.py' 2025-11-25T08:32:36,553 adding 'starfish/core/util/argparse.py' 2025-11-25T08:32:36,554 adding 'starfish/core/util/clock.py' 2025-11-25T08:32:36,555 adding 'starfish/core/util/config.py' 2025-11-25T08:32:36,557 adding 'starfish/core/util/enum.py' 2025-11-25T08:32:36,558 adding 'starfish/core/util/exec.py' 2025-11-25T08:32:36,559 adding 'starfish/core/util/levels.py' 2025-11-25T08:32:36,561 adding 'starfish/core/util/logging.py' 2025-11-25T08:32:36,562 adding 'starfish/core/util/try_import.py' 2025-11-25T08:32:36,564 adding 'starfish/core/util/click/__init__.py' 2025-11-25T08:32:36,565 adding 'starfish/core/util/test/__init__.py' 2025-11-25T08:32:36,567 adding 'starfish/core/util/test/test_levels.py' 2025-11-25T08:32:36,568 adding 'starfish/core/util/test/test_preserve_float_range.py' 2025-11-25T08:32:36,570 adding 'starfish/experiment/__init__.py' 2025-11-25T08:32:36,571 adding 'starfish/experiment/builder.py' 2025-11-25T08:32:36,574 adding 'starfish/spacetx_format/examples/codebook/codebook.json' 2025-11-25T08:32:36,575 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal.json' 2025-11-25T08:32:36,576 adding 'starfish/spacetx_format/examples/codebook/codebook_diagonal_inferred_value.json' 2025-11-25T08:32:36,578 adding 'starfish/spacetx_format/examples/experiment/dartfish_experiment.json' 2025-11-25T08:32:36,579 adding 'starfish/spacetx_format/examples/experiment/experiment.json' 2025-11-25T08:32:36,580 adding 'starfish/spacetx_format/examples/experiment/no_fov_manifest.json' 2025-11-25T08:32:36,582 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_scalar.json' 2025-11-25T08:32:36,583 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_x_single.json' 2025-11-25T08:32:36,584 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_scalar.json' 2025-11-25T08:32:36,585 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_y_single.json' 2025-11-25T08:32:36,586 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_single.json' 2025-11-25T08:32:36,587 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_bad_z_triple.json' 2025-11-25T08:32:36,588 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_max.json' 2025-11-25T08:32:36,590 adding 'starfish/spacetx_format/examples/field_of_view/coordinates_good_min.json' 2025-11-25T08:32:36,591 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_field_of_view.json' 2025-11-25T08:32:36,592 adding 'starfish/spacetx_format/examples/field_of_view/dartfish_nuclei.json' 2025-11-25T08:32:36,594 adding 'starfish/spacetx_format/examples/field_of_view/field_of_view.json' 2025-11-25T08:32:36,595 adding 'starfish/spacetx_format/examples/field_of_view/too_large.json' 2025-11-25T08:32:36,597 adding 'starfish/spacetx_format/examples/fov_manifest/fov_manifest.json' 2025-11-25T08:32:36,599 adding 'starfish/spacetx_format/schema/experiment_4.0.0.json' 2025-11-25T08:32:36,600 adding 'starfish/spacetx_format/schema/experiment_5.0.0.json' 2025-11-25T08:32:36,601 adding 'starfish/spacetx_format/schema/extras.json' 2025-11-25T08:32:36,602 adding 'starfish/spacetx_format/schema/fov_manifest_0.0.0.json' 2025-11-25T08:32:36,604 adding 'starfish/spacetx_format/schema/fov_manifest_0.1.0.json' 2025-11-25T08:32:36,605 adding 'starfish/spacetx_format/schema/version.json' 2025-11-25T08:32:36,607 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codebook.json' 2025-11-25T08:32:36,608 adding 'starfish/spacetx_format/schema/codebook_0.0.0/codeword.json' 2025-11-25T08:32:36,610 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/field_of_view.json' 2025-11-25T08:32:36,611 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/coordinates.json' 2025-11-25T08:32:36,612 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/indices.json' 2025-11-25T08:32:36,614 adding 'starfish/spacetx_format/schema/field_of_view_0.0.0/tiles/tiles.json' 2025-11-25T08:32:36,616 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/field_of_view.json' 2025-11-25T08:32:36,617 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/coordinates.json' 2025-11-25T08:32:36,619 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/indices.json' 2025-11-25T08:32:36,620 adding 'starfish/spacetx_format/schema/field_of_view_0.1.0/tiles/tiles.json' 2025-11-25T08:32:36,622 adding 'starfish/test/__init__.py' 2025-11-25T08:32:36,623 adding 'starfish/test/full_pipelines/__init__.py' 2025-11-25T08:32:36,625 adding 'starfish/test/full_pipelines/api/__init__.py' 2025-11-25T08:32:36,626 adding 'starfish/test/full_pipelines/api/test_allen_smFISH.py' 2025-11-25T08:32:36,628 adding 'starfish/test/full_pipelines/api/test_dartfish.py' 2025-11-25T08:32:36,629 adding 'starfish/test/full_pipelines/api/test_iss_api.py' 2025-11-25T08:32:36,631 adding 'starfish/test/full_pipelines/api/test_iss_doc_pipeline.py' 2025-11-25T08:32:36,633 adding 'starfish/test/full_pipelines/api/test_merfish.py' 2025-11-25T08:32:36,635 adding 'starfish/util/__init__.py' 2025-11-25T08:32:36,637 adding 'starfish/util/plot.py' 2025-11-25T08:32:36,640 adding 'starfish-0.3.4.dist-info/licenses/LICENSE' 2025-11-25T08:32:36,641 adding 'starfish-0.3.4.dist-info/METADATA' 2025-11-25T08:32:36,642 adding 'starfish-0.3.4.dist-info/WHEEL' 2025-11-25T08:32:36,643 adding 'starfish-0.3.4.dist-info/entry_points.txt' 2025-11-25T08:32:36,644 adding 'starfish-0.3.4.dist-info/top_level.txt' 2025-11-25T08:32:36,649 adding 'starfish-0.3.4.dist-info/RECORD' 2025-11-25T08:32:36,658 removing build/bdist.linux-armv7l/wheel 2025-11-25T08:32:36,883 Building wheel for starfish (pyproject.toml): finished with status 'done' 2025-11-25T08:32:36,898 Created wheel for starfish: filename=starfish-0.3.4-py3-none-any.whl size=398520 sha256=72cce97d151475f1954baa32345439f965d52cd2c90f0fbafa74148d18ce42dd 2025-11-25T08:32:36,900 Stored in directory: /tmp/pip-ephem-wheel-cache-lwg1zl9z/wheels/9e/58/1a/59c9e752982b49bfe450e73addc9623db9809f3cf5831f3037 2025-11-25T08:32:36,922 Successfully built starfish 2025-11-25T08:32:36,939 Removed build tracker: '/tmp/pip-build-tracker-1mmszs15'