2025-11-25T20:03:42,994 Created temporary directory: /tmp/pip-ephem-wheel-cache-r7mudzu1 2025-11-25T20:03:42,996 Created temporary directory: /tmp/pip-build-tracker-68mf314v 2025-11-25T20:03:42,997 Initialized build tracking at /tmp/pip-build-tracker-68mf314v 2025-11-25T20:03:42,997 Created build tracker: /tmp/pip-build-tracker-68mf314v 2025-11-25T20:03:42,997 Entered build tracker: /tmp/pip-build-tracker-68mf314v 2025-11-25T20:03:42,998 Created temporary directory: /tmp/pip-wheel-fk_6tbhq 2025-11-25T20:03:43,001 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-25T20:03:43,004 Created temporary directory: /tmp/pip-ephem-wheel-cache-z8_l9r0u 2025-11-25T20:03:43,028 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-25T20:03:43,031 2 location(s) to search for versions of snpraefentia: 2025-11-25T20:03:43,031 * https://pypi.org/simple/snpraefentia/ 2025-11-25T20:03:43,031 * https://www.piwheels.org/simple/snpraefentia/ 2025-11-25T20:03:43,032 Fetching project page and analyzing links: https://pypi.org/simple/snpraefentia/ 2025-11-25T20:03:43,033 Getting page https://pypi.org/simple/snpraefentia/ 2025-11-25T20:03:43,034 Found index url https://pypi.org/simple 2025-11-25T20:03:43,269 Fetched page https://pypi.org/simple/snpraefentia/ as application/vnd.pypi.simple.v1+json 2025-11-25T20:03:43,271 Skipping link: No binaries permitted for snpraefentia: https://files.pythonhosted.org/packages/ab/3b/9b5054cd721b2d48adebaa4f9ebfba871cac07b386f14a5c4c0d38a779ee/snpraefentia-2.0.0-py3-none-any.whl (from https://pypi.org/simple/snpraefentia/) (requires-python:>=3.9) 2025-11-25T20:03:43,272 Found link https://files.pythonhosted.org/packages/b5/45/1cc7e040ca5a9c9e8c9501184065fa281249e1e25b30b019e1fbc409a2d3/snpraefentia-2.0.0.tar.gz (from https://pypi.org/simple/snpraefentia/) (requires-python:>=3.9), version: 2.0.0 2025-11-25T20:03:43,273 Fetching project page and analyzing links: https://www.piwheels.org/simple/snpraefentia/ 2025-11-25T20:03:43,274 Getting page https://www.piwheels.org/simple/snpraefentia/ 2025-11-25T20:03:43,276 Found index url https://www.piwheels.org/simple 2025-11-25T20:03:43,443 Fetched page https://www.piwheels.org/simple/snpraefentia/ as text/html 2025-11-25T20:03:43,444 Skipping link: not a file: https://www.piwheels.org/simple/snpraefentia/ 2025-11-25T20:03:43,445 Skipping link: not a file: https://pypi.org/simple/snpraefentia/ 2025-11-25T20:03:43,464 Given no hashes to check 1 links for project 'snpraefentia': discarding no candidates 2025-11-25T20:03:43,482 Collecting snpraefentia==2.0.0 2025-11-25T20:03:43,484 Created temporary directory: /tmp/pip-unpack-_8br_qdj 2025-11-25T20:03:43,703 Downloading snpraefentia-2.0.0.tar.gz (26 kB) 2025-11-25T20:03:43,781 Added snpraefentia==2.0.0 from https://files.pythonhosted.org/packages/b5/45/1cc7e040ca5a9c9e8c9501184065fa281249e1e25b30b019e1fbc409a2d3/snpraefentia-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-68mf314v' 2025-11-25T20:03:43,786 Created temporary directory: /tmp/pip-build-env-67vvyvkf 2025-11-25T20:03:43,791 Installing build dependencies: started 2025-11-25T20:03:43,792 Running command pip subprocess to install build dependencies 2025-11-25T20:03:44,920 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-11-25T20:03:45,549 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-25T20:03:45,573 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-25T20:03:47,327 Collecting setuptools>=64 2025-11-25T20:03:47,430 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-11-25T20:03:47,699 Collecting wheel 2025-11-25T20:03:47,719 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-11-25T20:03:50,601 Installing collected packages: wheel, setuptools 2025-11-25T20:03:50,845 Creating /tmp/pip-build-env-67vvyvkf/overlay/local/bin 2025-11-25T20:03:50,847 changing mode of /tmp/pip-build-env-67vvyvkf/overlay/local/bin/wheel to 755 2025-11-25T20:03:54,439 Successfully installed setuptools-80.9.0 wheel-0.45.1 2025-11-25T20:03:54,713 Installing build dependencies: finished with status 'done' 2025-11-25T20:03:54,719 Getting requirements to build wheel: started 2025-11-25T20:03:54,721 Running command Getting requirements to build wheel 2025-11-25T20:03:55,452 running egg_info 2025-11-25T20:03:55,459 writing snpraefentia.egg-info/PKG-INFO 2025-11-25T20:03:55,463 writing dependency_links to snpraefentia.egg-info/dependency_links.txt 2025-11-25T20:03:55,465 writing entry points to snpraefentia.egg-info/entry_points.txt 2025-11-25T20:03:55,467 writing requirements to snpraefentia.egg-info/requires.txt 2025-11-25T20:03:55,469 writing top-level names to snpraefentia.egg-info/top_level.txt 2025-11-25T20:03:55,495 reading manifest file 'snpraefentia.egg-info/SOURCES.txt' 2025-11-25T20:03:55,498 adding license file 'LICENSE' 2025-11-25T20:03:55,502 writing manifest file 'snpraefentia.egg-info/SOURCES.txt' 2025-11-25T20:03:55,599 Getting requirements to build wheel: finished with status 'done' 2025-11-25T20:03:55,603 Created temporary directory: /tmp/pip-modern-metadata-z0w_1qdr 2025-11-25T20:03:55,605 Preparing metadata (pyproject.toml): started 2025-11-25T20:03:55,607 Running command Preparing metadata (pyproject.toml) 2025-11-25T20:03:56,258 running dist_info 2025-11-25T20:03:56,270 creating /tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info 2025-11-25T20:03:56,271 writing /tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/PKG-INFO 2025-11-25T20:03:56,275 writing dependency_links to /tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/dependency_links.txt 2025-11-25T20:03:56,277 writing entry points to /tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/entry_points.txt 2025-11-25T20:03:56,279 writing requirements to /tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/requires.txt 2025-11-25T20:03:56,280 writing top-level names to /tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/top_level.txt 2025-11-25T20:03:56,281 writing manifest file '/tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/SOURCES.txt' 2025-11-25T20:03:56,304 reading manifest file '/tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/SOURCES.txt' 2025-11-25T20:03:56,306 adding license file 'LICENSE' 2025-11-25T20:03:56,309 writing manifest file '/tmp/pip-modern-metadata-z0w_1qdr/snpraefentia.egg-info/SOURCES.txt' 2025-11-25T20:03:56,311 creating '/tmp/pip-modern-metadata-z0w_1qdr/snpraefentia-2.0.0.dist-info' 2025-11-25T20:03:56,438 Preparing metadata (pyproject.toml): finished with status 'done' 2025-11-25T20:03:56,446 Source in /tmp/pip-wheel-fk_6tbhq/snpraefentia_4bad5594737f4380bf5b4f06e40da187 has version 2.0.0, which satisfies requirement snpraefentia==2.0.0 from https://files.pythonhosted.org/packages/b5/45/1cc7e040ca5a9c9e8c9501184065fa281249e1e25b30b019e1fbc409a2d3/snpraefentia-2.0.0.tar.gz 2025-11-25T20:03:56,447 Removed snpraefentia==2.0.0 from https://files.pythonhosted.org/packages/b5/45/1cc7e040ca5a9c9e8c9501184065fa281249e1e25b30b019e1fbc409a2d3/snpraefentia-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-68mf314v' 2025-11-25T20:03:56,454 Created temporary directory: /tmp/pip-unpack-wwx5hfy6 2025-11-25T20:03:56,455 Building wheels for collected packages: snpraefentia 2025-11-25T20:03:56,460 Created temporary directory: /tmp/pip-wheel-9zof73wg 2025-11-25T20:03:56,461 Destination directory: /tmp/pip-wheel-9zof73wg 2025-11-25T20:03:56,463 Building wheel for snpraefentia (pyproject.toml): started 2025-11-25T20:03:56,464 Running command Building wheel for snpraefentia (pyproject.toml) 2025-11-25T20:03:57,088 running bdist_wheel 2025-11-25T20:03:57,109 running build 2025-11-25T20:03:57,109 running build_py 2025-11-25T20:03:57,116 creating build/lib/snpraefentia 2025-11-25T20:03:57,118 copying snpraefentia/scoring.py -> build/lib/snpraefentia 2025-11-25T20:03:57,120 copying snpraefentia/config.py -> build/lib/snpraefentia 2025-11-25T20:03:57,121 copying snpraefentia/__init__.py -> build/lib/snpraefentia 2025-11-25T20:03:57,123 copying snpraefentia/plotting.py -> build/lib/snpraefentia 2025-11-25T20:03:57,125 copying snpraefentia/cli.py -> build/lib/snpraefentia 2025-11-25T20:03:57,128 copying snpraefentia/core.py -> build/lib/snpraefentia 2025-11-25T20:03:57,130 creating build/lib/snpraefentia/tests 2025-11-25T20:03:57,131 copying snpraefentia/tests/test_processors.py -> build/lib/snpraefentia/tests 2025-11-25T20:03:57,134 copying snpraefentia/tests/test_scoring.py -> build/lib/snpraefentia/tests 2025-11-25T20:03:57,136 copying snpraefentia/tests/test_core.py -> build/lib/snpraefentia/tests 2025-11-25T20:03:57,138 copying snpraefentia/tests/__init__.py -> build/lib/snpraefentia/tests 2025-11-25T20:03:57,140 creating build/lib/snpraefentia/processors 2025-11-25T20:03:57,141 copying snpraefentia/processors/uniprot.py -> build/lib/snpraefentia/processors 2025-11-25T20:03:57,143 copying snpraefentia/processors/depth.py -> build/lib/snpraefentia/processors 2025-11-25T20:03:57,145 copying snpraefentia/processors/amino_acid.py -> build/lib/snpraefentia/processors 2025-11-25T20:03:57,147 copying snpraefentia/processors/__init__.py -> build/lib/snpraefentia/processors 2025-11-25T20:03:57,148 copying snpraefentia/processors/taxonomy.py -> build/lib/snpraefentia/processors 2025-11-25T20:03:57,151 creating build/lib/snpraefentia/io 2025-11-25T20:03:57,152 copying snpraefentia/io/__init__.py -> build/lib/snpraefentia/io 2025-11-25T20:03:57,153 copying snpraefentia/io/loader.py -> build/lib/snpraefentia/io 2025-11-25T20:03:57,155 copying snpraefentia/io/writer.py -> build/lib/snpraefentia/io 2025-11-25T20:03:57,157 creating build/lib/snpraefentia/db 2025-11-25T20:03:57,158 copying snpraefentia/db/__init__.py -> build/lib/snpraefentia/db 2025-11-25T20:03:57,160 copying snpraefentia/db/aa_properties.py -> build/lib/snpraefentia/db 2025-11-25T20:03:57,162 running egg_info 2025-11-25T20:03:57,173 writing snpraefentia.egg-info/PKG-INFO 2025-11-25T20:03:57,176 writing dependency_links to snpraefentia.egg-info/dependency_links.txt 2025-11-25T20:03:57,178 writing entry points to snpraefentia.egg-info/entry_points.txt 2025-11-25T20:03:57,179 writing requirements to snpraefentia.egg-info/requires.txt 2025-11-25T20:03:57,180 writing top-level names to snpraefentia.egg-info/top_level.txt 2025-11-25T20:03:57,192 reading manifest file 'snpraefentia.egg-info/SOURCES.txt' 2025-11-25T20:03:57,195 adding license file 'LICENSE' 2025-11-25T20:03:57,199 writing manifest file 'snpraefentia.egg-info/SOURCES.txt' 2025-11-25T20:03:57,215 installing to build/bdist.linux-armv7l/wheel 2025-11-25T20:03:57,215 running install 2025-11-25T20:03:57,238 running install_lib 2025-11-25T20:03:57,244 creating build/bdist.linux-armv7l/wheel 2025-11-25T20:03:57,247 creating build/bdist.linux-armv7l/wheel/snpraefentia 2025-11-25T20:03:57,248 creating build/bdist.linux-armv7l/wheel/snpraefentia/tests 2025-11-25T20:03:57,250 copying build/lib/snpraefentia/tests/test_processors.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/tests 2025-11-25T20:03:57,252 copying build/lib/snpraefentia/tests/test_scoring.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/tests 2025-11-25T20:03:57,254 copying build/lib/snpraefentia/tests/test_core.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/tests 2025-11-25T20:03:57,256 copying build/lib/snpraefentia/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/tests 2025-11-25T20:03:57,258 copying build/lib/snpraefentia/scoring.py -> build/bdist.linux-armv7l/wheel/./snpraefentia 2025-11-25T20:03:57,259 copying build/lib/snpraefentia/config.py -> build/bdist.linux-armv7l/wheel/./snpraefentia 2025-11-25T20:03:57,262 creating build/bdist.linux-armv7l/wheel/snpraefentia/processors 2025-11-25T20:03:57,263 copying build/lib/snpraefentia/processors/uniprot.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/processors 2025-11-25T20:03:57,265 copying build/lib/snpraefentia/processors/depth.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/processors 2025-11-25T20:03:57,267 copying build/lib/snpraefentia/processors/amino_acid.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/processors 2025-11-25T20:03:57,269 copying build/lib/snpraefentia/processors/__init__.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/processors 2025-11-25T20:03:57,271 copying build/lib/snpraefentia/processors/taxonomy.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/processors 2025-11-25T20:03:57,272 copying build/lib/snpraefentia/__init__.py -> build/bdist.linux-armv7l/wheel/./snpraefentia 2025-11-25T20:03:57,274 copying build/lib/snpraefentia/plotting.py -> build/bdist.linux-armv7l/wheel/./snpraefentia 2025-11-25T20:03:57,277 creating build/bdist.linux-armv7l/wheel/snpraefentia/io 2025-11-25T20:03:57,278 copying build/lib/snpraefentia/io/__init__.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/io 2025-11-25T20:03:57,280 copying build/lib/snpraefentia/io/loader.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/io 2025-11-25T20:03:57,282 copying build/lib/snpraefentia/io/writer.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/io 2025-11-25T20:03:57,284 copying build/lib/snpraefentia/cli.py -> build/bdist.linux-armv7l/wheel/./snpraefentia 2025-11-25T20:03:57,286 copying build/lib/snpraefentia/core.py -> build/bdist.linux-armv7l/wheel/./snpraefentia 2025-11-25T20:03:57,289 creating build/bdist.linux-armv7l/wheel/snpraefentia/db 2025-11-25T20:03:57,290 copying build/lib/snpraefentia/db/__init__.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/db 2025-11-25T20:03:57,292 copying build/lib/snpraefentia/db/aa_properties.py -> build/bdist.linux-armv7l/wheel/./snpraefentia/db 2025-11-25T20:03:57,294 running install_egg_info 2025-11-25T20:03:57,299 Copying snpraefentia.egg-info to build/bdist.linux-armv7l/wheel/./snpraefentia-2.0.0-py3.11.egg-info 2025-11-25T20:03:57,311 running install_scripts 2025-11-25T20:03:57,324 creating build/bdist.linux-armv7l/wheel/snpraefentia-2.0.0.dist-info/WHEEL 2025-11-25T20:03:57,327 creating '/tmp/pip-wheel-9zof73wg/.tmp-1m5vwe3s/snpraefentia-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-25T20:03:57,330 adding 'snpraefentia/__init__.py' 2025-11-25T20:03:57,332 adding 'snpraefentia/cli.py' 2025-11-25T20:03:57,333 adding 'snpraefentia/config.py' 2025-11-25T20:03:57,335 adding 'snpraefentia/core.py' 2025-11-25T20:03:57,337 adding 'snpraefentia/plotting.py' 2025-11-25T20:03:57,338 adding 'snpraefentia/scoring.py' 2025-11-25T20:03:57,340 adding 'snpraefentia/db/__init__.py' 2025-11-25T20:03:57,341 adding 'snpraefentia/db/aa_properties.py' 2025-11-25T20:03:57,343 adding 'snpraefentia/io/__init__.py' 2025-11-25T20:03:57,345 adding 'snpraefentia/io/loader.py' 2025-11-25T20:03:57,346 adding 'snpraefentia/io/writer.py' 2025-11-25T20:03:57,348 adding 'snpraefentia/processors/__init__.py' 2025-11-25T20:03:57,349 adding 'snpraefentia/processors/amino_acid.py' 2025-11-25T20:03:57,350 adding 'snpraefentia/processors/depth.py' 2025-11-25T20:03:57,352 adding 'snpraefentia/processors/taxonomy.py' 2025-11-25T20:03:57,353 adding 'snpraefentia/processors/uniprot.py' 2025-11-25T20:03:57,355 adding 'snpraefentia/tests/__init__.py' 2025-11-25T20:03:57,356 adding 'snpraefentia/tests/test_core.py' 2025-11-25T20:03:57,357 adding 'snpraefentia/tests/test_processors.py' 2025-11-25T20:03:57,359 adding 'snpraefentia/tests/test_scoring.py' 2025-11-25T20:03:57,362 adding 'snpraefentia-2.0.0.dist-info/licenses/LICENSE' 2025-11-25T20:03:57,364 adding 'snpraefentia-2.0.0.dist-info/METADATA' 2025-11-25T20:03:57,365 adding 'snpraefentia-2.0.0.dist-info/WHEEL' 2025-11-25T20:03:57,366 adding 'snpraefentia-2.0.0.dist-info/entry_points.txt' 2025-11-25T20:03:57,367 adding 'snpraefentia-2.0.0.dist-info/top_level.txt' 2025-11-25T20:03:57,368 adding 'snpraefentia-2.0.0.dist-info/RECORD' 2025-11-25T20:03:57,369 removing build/bdist.linux-armv7l/wheel 2025-11-25T20:03:57,476 Building wheel for snpraefentia (pyproject.toml): finished with status 'done' 2025-11-25T20:03:57,481 Created wheel for snpraefentia: filename=snpraefentia-2.0.0-py3-none-any.whl size=32282 sha256=3d34fbb2db6f7fc21ecdc3fe3a9d31b4bda1c5deafdc50e853760db76e76f34e 2025-11-25T20:03:57,482 Stored in directory: /tmp/pip-ephem-wheel-cache-z8_l9r0u/wheels/fd/4b/87/b0a91604263cab87bf54c3e2f6173c30f22ea2a281e6d908da 2025-11-25T20:03:57,495 Successfully built snpraefentia 2025-11-25T20:03:57,499 Removed build tracker: '/tmp/pip-build-tracker-68mf314v'