2025-11-30T08:19:21,926 Created temporary directory: /tmp/pip-ephem-wheel-cache-vvck33wq 2025-11-30T08:19:21,928 Created temporary directory: /tmp/pip-build-tracker-ldx5e37h 2025-11-30T08:19:21,929 Initialized build tracking at /tmp/pip-build-tracker-ldx5e37h 2025-11-30T08:19:21,929 Created build tracker: /tmp/pip-build-tracker-ldx5e37h 2025-11-30T08:19:21,930 Entered build tracker: /tmp/pip-build-tracker-ldx5e37h 2025-11-30T08:19:21,931 Created temporary directory: /tmp/pip-wheel-3rt40kb2 2025-11-30T08:19:21,934 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-11-30T08:19:21,936 Created temporary directory: /tmp/pip-ephem-wheel-cache-qn9chanp 2025-11-30T08:19:21,961 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-11-30T08:19:21,965 2 location(s) to search for versions of cassia: 2025-11-30T08:19:21,965 * https://pypi.org/simple/cassia/ 2025-11-30T08:19:21,965 * https://www.piwheels.org/simple/cassia/ 2025-11-30T08:19:21,966 Fetching project page and analyzing links: https://pypi.org/simple/cassia/ 2025-11-30T08:19:21,966 Getting page https://pypi.org/simple/cassia/ 2025-11-30T08:19:21,968 Found index url https://pypi.org/simple 2025-11-30T08:19:22,177 Fetched page https://pypi.org/simple/cassia/ as application/vnd.pypi.simple.v1+json 2025-11-30T08:19:22,183 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/fd/14/94da6522b1364498cddd2c537019fc450393500cdc692b689297115da8ec/CASSIA-0.1-py3-none-any.whl (from https://pypi.org/simple/cassia/) 2025-11-30T08:19:22,184 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/f7/1b/6997afb5835697ec0ef343b4ad8c02d0a29f3b86e89705d36ce76f95e311/CASSIA-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cassia/) 2025-11-30T08:19:22,184 Found link https://files.pythonhosted.org/packages/26/97/db8e55429eee275f757c4447b74a395a0e5c21922c4f502d93f0977ae9b2/cassia-0.1.tar.gz (from https://pypi.org/simple/cassia/), version: 0.1 2025-11-30T08:19:22,185 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/bd/f9/d0cd59dd7ce3d19c2ffb54d448002a2396640796d331474044d229129192/CASSIA-0.1.1-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,186 Found link https://files.pythonhosted.org/packages/80/fa/494a5d4035fd6e11e7d80197728297196f244c54a072cf72d65ab0345b98/cassia-0.1.1.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.1 2025-11-30T08:19:22,186 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/6f/d8/4900dc3805e66254667d349f4d51c8ac8a5342ca145785e5b9d0f80e3aa1/CASSIA-0.1.2-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,187 Found link https://files.pythonhosted.org/packages/36/6b/b9f052c0de80cfab4026b64a8c0a2042c46275aba336623484a3013233f8/cassia-0.1.2.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.2 2025-11-30T08:19:22,188 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/dd/a7/23e6df5395de019994180ba12dfda49d85702fe01d3635ccf230133a76d5/CASSIA-0.1.3-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,189 Found link https://files.pythonhosted.org/packages/30/6c/a3d59df5aba1a664d3ec3494dfabc008a35f2391b095545c6de517345699/cassia-0.1.3.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.3 2025-11-30T08:19:22,190 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/73/95/c7a43ea77725d76db542aa209815aade50c2a857c320aa49a30d9b30311b/CASSIA-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,191 Found link https://files.pythonhosted.org/packages/b8/ac/bfc205400bd5a1856ef48e20a56f78971cdb98f6b7681936d0a8d36c5ad9/cassia-0.1.4.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.4 2025-11-30T08:19:22,192 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/58/a5/4c80ef7639de67ddcd728825d7c0054cb0f11ae6494e3c53b83ea0dd4a8c/CASSIA-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,192 Found link https://files.pythonhosted.org/packages/35/92/abce78e33564190569868bfa24fa1bb57197c46a56e245c04b674849c4ad/cassia-0.1.5.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.5 2025-11-30T08:19:22,193 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/b7/da/dff3b6ffc6a6958de824b5ca680bc8d0543799343ccc4a45f2aae940941a/CASSIA-0.1.6-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,194 Found link https://files.pythonhosted.org/packages/e8/b6/f39d8bf9410a597b9ff10da7a4a8a67939aa2d33214d20db4d645a1cec44/cassia-0.1.6.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.6 2025-11-30T08:19:22,194 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/96/1f/bb55e307a91d58477954d8786da585b9b4c4952bb3024a04cfe9461b9be9/CASSIA-0.1.7-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,195 Found link https://files.pythonhosted.org/packages/33/42/7ee57e8e2f32734268e4b486e0ea072869996ea2f0736fcc8502fbe28ccf/cassia-0.1.7.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.7 2025-11-30T08:19:22,196 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/70/04/7c91cc5853ad95a37f922e401379f6b618ade43b11445eef018cfb436d56/CASSIA-0.1.8-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,197 Found link https://files.pythonhosted.org/packages/5d/16/7c43c97b5902f6fd7c1be4d726071a66cc65a2ba85880aba619f486d12a0/cassia-0.1.8.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.8 2025-11-30T08:19:22,198 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/70/da/c5c1418310e8615c77ad99119af127f3ac2bdb21d5c69725df82583ca76e/CASSIA-0.1.9-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,198 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/5a/81/dd2738b5a33767ed19eee3c6add0bc13397e7bc1144e82f045762875feee/cassia-0.1.9-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,200 Found link https://files.pythonhosted.org/packages/fa/c4/1d279642d823e5fb7816e5dc0c9cf96b7256f3cabc3422762a1c64f9d5b4/cassia-0.1.9.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.9 2025-11-30T08:19:22,200 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/4d/89/acd0978a3887e8b2fbf2d13dbf2cae3c19e3a08d0ddb2556775382b3be6b/cassia-0.2.0-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,201 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/8c/7d/3a7f158a1eaacbc08841d040134a21f9f1fbdfe6626957b1859bd2f9ab33/cassia-0.3.1.dev5-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.9) 2025-11-30T08:19:22,202 Found link https://files.pythonhosted.org/packages/cf/72/ca0b05784b7d668e4a4db6f638a3d7755898428d4db3e16b6cb050f6b6e2/cassia-0.3.1.dev5.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.9), version: 0.3.1.dev5 2025-11-30T08:19:22,203 Fetching project page and analyzing links: https://www.piwheels.org/simple/cassia/ 2025-11-30T08:19:22,204 Getting page https://www.piwheels.org/simple/cassia/ 2025-11-30T08:19:22,205 Found index url https://www.piwheels.org/simple 2025-11-30T08:19:22,417 Fetched page https://www.piwheels.org/simple/cassia/ as text/html 2025-11-30T08:19:22,421 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.9-py3-none-any.whl#sha256=4c587602b1448b8326ae2da0164231e380dafd18476e24c360e0d5feab208609 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,421 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.8-py3-none-any.whl#sha256=cef2f4adcf97a44f0f82dd394894647453f715df43e0f5856d81585be13c751b (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,422 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.7-py3-none-any.whl#sha256=46ffccf6ecab46768cce8957600e3f5bb1acb23dbcca70881c3ab046159e76a6 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,422 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.6-py3-none-any.whl#sha256=e677bff5ce5ec53e01b7f460be6137747a33b853bdacbb1fa3d11f02762ae789 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,423 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.5-py3-none-any.whl#sha256=c1fa353a8507b7eca9619d54936424e38712e556ac918e547bb5404d1ad82fa3 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,423 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.4-py3-none-any.whl#sha256=123d4ecb5c6db6bf550344141a0cdc4fc41e704b0a40f39833d42d413e0e023d (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,424 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.3-py3-none-any.whl#sha256=8199c427ae36776b6c0278e67653729e138fb30e0a7769a9d13a85457163cc56 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,424 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.2-py3-none-any.whl#sha256=6d708d28ac90607cc607a0eef783d50c308e58d3b6033e859b1dd9b9e43e13a6 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,425 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.1-py3-none-any.whl#sha256=dec9df705c4c727b15a27e8e00e5e5a596dfec5a1606399d07c55f3014e3966a (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-11-30T08:19:22,425 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1-py3-none-any.whl#sha256=56cd7ee82de55f6979e4830559b1b507ee28ff730829f8effcbad8a045873a5a (from https://www.piwheels.org/simple/cassia/) 2025-11-30T08:19:22,426 Skipping link: not a file: https://www.piwheels.org/simple/cassia/ 2025-11-30T08:19:22,426 Skipping link: not a file: https://pypi.org/simple/cassia/ 2025-11-30T08:19:22,446 Given no hashes to check 1 links for project 'cassia': discarding no candidates 2025-11-30T08:19:22,464 Collecting cassia==0.3.1.dev5 2025-11-30T08:19:22,466 Created temporary directory: /tmp/pip-unpack-qxigtd2a 2025-11-30T08:19:22,607 Downloading cassia-0.3.1.dev5.tar.gz (1.5 MB) 2025-11-30T08:19:23,095 Added cassia==0.3.1.dev5 from https://files.pythonhosted.org/packages/cf/72/ca0b05784b7d668e4a4db6f638a3d7755898428d4db3e16b6cb050f6b6e2/cassia-0.3.1.dev5.tar.gz to build tracker '/tmp/pip-build-tracker-ldx5e37h' 2025-11-30T08:19:23,097 Running setup.py (path:/tmp/pip-wheel-3rt40kb2/cassia_a5d8f56a0c624293bab1cf35f227e2fc/setup.py) egg_info for package cassia 2025-11-30T08:19:23,098 Created temporary directory: /tmp/pip-pip-egg-info-9dkea596 2025-11-30T08:19:23,099 Preparing metadata (setup.py): started 2025-11-30T08:19:23,100 Running command python setup.py egg_info 2025-11-30T08:19:23,987 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-30T08:19:23,987 !! 2025-11-30T08:19:23,988 ******************************************************************************** 2025-11-30T08:19:23,988 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-30T08:19:23,989 License :: OSI Approved :: MIT License 2025-11-30T08:19:23,990 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-30T08:19:23,991 ******************************************************************************** 2025-11-30T08:19:23,992 !! 2025-11-30T08:19:23,992 self._finalize_license_expression() 2025-11-30T08:19:24,019 running egg_info 2025-11-30T08:19:24,047 creating /tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info 2025-11-30T08:19:24,048 writing /tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info/PKG-INFO 2025-11-30T08:19:24,052 writing dependency_links to /tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info/dependency_links.txt 2025-11-30T08:19:24,054 writing requirements to /tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info/requires.txt 2025-11-30T08:19:24,055 writing top-level names to /tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info/top_level.txt 2025-11-30T08:19:24,057 writing manifest file '/tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info/SOURCES.txt' 2025-11-30T08:19:24,163 reading manifest file '/tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info/SOURCES.txt' 2025-11-30T08:19:24,168 writing manifest file '/tmp/pip-pip-egg-info-9dkea596/CASSIA.egg-info/SOURCES.txt' 2025-11-30T08:19:24,276 Preparing metadata (setup.py): finished with status 'done' 2025-11-30T08:19:24,280 Source in /tmp/pip-wheel-3rt40kb2/cassia_a5d8f56a0c624293bab1cf35f227e2fc has version 0.3.1.dev5, which satisfies requirement cassia==0.3.1.dev5 from https://files.pythonhosted.org/packages/cf/72/ca0b05784b7d668e4a4db6f638a3d7755898428d4db3e16b6cb050f6b6e2/cassia-0.3.1.dev5.tar.gz 2025-11-30T08:19:24,281 Removed cassia==0.3.1.dev5 from https://files.pythonhosted.org/packages/cf/72/ca0b05784b7d668e4a4db6f638a3d7755898428d4db3e16b6cb050f6b6e2/cassia-0.3.1.dev5.tar.gz from build tracker '/tmp/pip-build-tracker-ldx5e37h' 2025-11-30T08:19:24,288 Created temporary directory: /tmp/pip-unpack-9npxrm0_ 2025-11-30T08:19:24,288 Building wheels for collected packages: cassia 2025-11-30T08:19:24,293 Created temporary directory: /tmp/pip-wheel-6p4dkl5e 2025-11-30T08:19:24,294 Building wheel for cassia (setup.py): started 2025-11-30T08:19:24,295 Destination directory: /tmp/pip-wheel-6p4dkl5e 2025-11-30T08:19:24,296 Running command python setup.py bdist_wheel 2025-11-30T08:19:25,131 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-11-30T08:19:25,132 !! 2025-11-30T08:19:25,134 ******************************************************************************** 2025-11-30T08:19:25,135 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-11-30T08:19:25,136 License :: OSI Approved :: MIT License 2025-11-30T08:19:25,137 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-11-30T08:19:25,138 ******************************************************************************** 2025-11-30T08:19:25,139 !! 2025-11-30T08:19:25,140 self._finalize_license_expression() 2025-11-30T08:19:25,140 running bdist_wheel 2025-11-30T08:19:25,268 running build 2025-11-30T08:19:25,268 running build_py 2025-11-30T08:19:25,299 creating build/lib/CASSIA 2025-11-30T08:19:25,302 copying CASSIA/LLM_evaluation_test.py -> build/lib/CASSIA 2025-11-30T08:19:25,305 copying CASSIA/generate_comparison.py -> build/lib/CASSIA 2025-11-30T08:19:25,308 copying CASSIA/__init__.py -> build/lib/CASSIA 2025-11-30T08:19:25,310 copying CASSIA/CASSIA_python_tutorial.py -> build/lib/CASSIA 2025-11-30T08:19:25,314 copying CASSIA/LLM_evaluation_getscore.py -> build/lib/CASSIA 2025-11-30T08:19:25,316 copying CASSIA/run_full_test.py -> build/lib/CASSIA 2025-11-30T08:19:25,319 creating build/lib/CASSIA/pipeline 2025-11-30T08:19:25,320 copying CASSIA/pipeline/pipeline.py -> build/lib/CASSIA/pipeline 2025-11-30T08:19:25,323 copying CASSIA/pipeline/__init__.py -> build/lib/CASSIA/pipeline 2025-11-30T08:19:25,325 creating build/lib/CASSIA/reports 2025-11-30T08:19:25,326 copying CASSIA/reports/generate_reports.py -> build/lib/CASSIA/reports 2025-11-30T08:19:25,330 copying CASSIA/reports/__init__.py -> build/lib/CASSIA/reports 2025-11-30T08:19:25,332 copying CASSIA/reports/generate_hypothesis_report.py -> build/lib/CASSIA/reports 2025-11-30T08:19:25,334 copying CASSIA/reports/generate_batch_report.py -> build/lib/CASSIA/reports 2025-11-30T08:19:25,337 creating build/lib/CASSIA/hypothesis 2025-11-30T08:19:25,338 copying CASSIA/hypothesis/__init__.py -> build/lib/CASSIA/hypothesis 2025-11-30T08:19:25,340 copying CASSIA/hypothesis/summarize_hypothesis_runs.py -> build/lib/CASSIA/hypothesis 2025-11-30T08:19:25,343 copying CASSIA/hypothesis/hypothesis_generation.py -> build/lib/CASSIA/hypothesis 2025-11-30T08:19:25,346 creating build/lib/CASSIA/config 2025-11-30T08:19:25,347 copying CASSIA/config/__init__.py -> build/lib/CASSIA/config 2025-11-30T08:19:25,350 copying CASSIA/config/set_api_keys.py -> build/lib/CASSIA/config 2025-11-30T08:19:25,352 creating build/lib/CASSIA/engine 2025-11-30T08:19:25,353 copying CASSIA/engine/tools_function.py -> build/lib/CASSIA/engine 2025-11-30T08:19:25,356 copying CASSIA/engine/__init__.py -> build/lib/CASSIA/engine 2025-11-30T08:19:25,358 copying CASSIA/engine/main_function_code.py -> build/lib/CASSIA/engine 2025-11-30T08:19:25,362 creating build/lib/CASSIA/core 2025-11-30T08:19:25,363 copying CASSIA/core/exceptions.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,365 copying CASSIA/core/model_settings.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,367 copying CASSIA/core/marker_utils.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,370 copying CASSIA/core/progress_tracker.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,372 copying CASSIA/core/__init__.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,374 copying CASSIA/core/utils.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,376 copying CASSIA/core/logging_config.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,378 copying CASSIA/core/validation.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,381 copying CASSIA/core/llm_utils.py -> build/lib/CASSIA/core 2025-11-30T08:19:25,384 creating build/lib/CASSIA/imaging 2025-11-30T08:19:25,385 copying CASSIA/imaging/__init__.py -> build/lib/CASSIA/imaging 2025-11-30T08:19:25,387 copying CASSIA/imaging/llm_image.py -> build/lib/CASSIA/imaging 2025-11-30T08:19:25,390 creating build/lib/CASSIA/data 2025-11-30T08:19:25,391 copying CASSIA/data/__init__.py -> build/lib/CASSIA/data 2025-11-30T08:19:25,394 creating build/lib/CASSIA/evaluation 2025-11-30T08:19:25,395 copying CASSIA/evaluation/cell_type_comparison.py -> build/lib/CASSIA/evaluation 2025-11-30T08:19:25,398 copying CASSIA/evaluation/scoring.py -> build/lib/CASSIA/evaluation 2025-11-30T08:19:25,402 copying CASSIA/evaluation/LLM_evaluation.py -> build/lib/CASSIA/evaluation 2025-11-30T08:19:25,405 copying CASSIA/evaluation/__init__.py -> build/lib/CASSIA/evaluation 2025-11-30T08:19:25,408 creating build/lib/CASSIA/agents 2025-11-30T08:19:25,409 copying CASSIA/agents/__init__.py -> build/lib/CASSIA/agents 2025-11-30T08:19:25,411 creating build/lib/CASSIA/comparison 2025-11-30T08:19:25,412 copying CASSIA/comparison/__init__.py -> build/lib/CASSIA/comparison 2025-11-30T08:19:25,415 copying CASSIA/comparison/symphony_compare.py -> build/lib/CASSIA/comparison 2025-11-30T08:19:25,418 creating build/lib/CASSIA/reference_agent 2025-11-30T08:19:25,419 copying CASSIA/reference_agent/complexity_scorer.py -> build/lib/CASSIA/reference_agent 2025-11-30T08:19:25,422 copying CASSIA/reference_agent/reference_selector.py -> build/lib/CASSIA/reference_agent 2025-11-30T08:19:25,424 copying CASSIA/reference_agent/reference_agent.py -> build/lib/CASSIA/reference_agent 2025-11-30T08:19:25,427 copying CASSIA/reference_agent/__init__.py -> build/lib/CASSIA/reference_agent 2025-11-30T08:19:25,429 copying CASSIA/reference_agent/utils.py -> build/lib/CASSIA/reference_agent 2025-11-30T08:19:25,431 copying CASSIA/reference_agent/section_extractor.py -> build/lib/CASSIA/reference_agent 2025-11-30T08:19:25,434 creating build/lib/CASSIA/agents/annotation_boost 2025-11-30T08:19:25,435 copying CASSIA/agents/annotation_boost/annotation_boost.py -> build/lib/CASSIA/agents/annotation_boost 2025-11-30T08:19:25,440 copying CASSIA/agents/annotation_boost/__init__.py -> build/lib/CASSIA/agents/annotation_boost 2025-11-30T08:19:25,442 copying CASSIA/agents/annotation_boost/super_annotation_boost.py -> build/lib/CASSIA/agents/annotation_boost 2025-11-30T08:19:25,448 creating build/lib/CASSIA/agents/merging 2025-11-30T08:19:25,449 copying CASSIA/agents/merging/__init__.py -> build/lib/CASSIA/agents/merging 2025-11-30T08:19:25,451 copying CASSIA/agents/merging/merging_annotation.py -> build/lib/CASSIA/agents/merging 2025-11-30T08:19:25,454 creating build/lib/CASSIA/agents/uncertainty 2025-11-30T08:19:25,455 copying CASSIA/agents/uncertainty/Uncertainty_quantification.py -> build/lib/CASSIA/agents/uncertainty 2025-11-30T08:19:25,459 copying CASSIA/agents/uncertainty/__init__.py -> build/lib/CASSIA/agents/uncertainty 2025-11-30T08:19:25,461 creating build/lib/CASSIA/agents/subclustering 2025-11-30T08:19:25,462 copying CASSIA/agents/subclustering/__init__.py -> build/lib/CASSIA/agents/subclustering 2025-11-30T08:19:25,464 copying CASSIA/agents/subclustering/subclustering.py -> build/lib/CASSIA/agents/subclustering 2025-11-30T08:19:25,468 creating build/lib/CASSIA/agents/reference_agent 2025-11-30T08:19:25,469 copying CASSIA/agents/reference_agent/complexity_scorer.py -> build/lib/CASSIA/agents/reference_agent 2025-11-30T08:19:25,471 copying CASSIA/agents/reference_agent/reference_selector.py -> build/lib/CASSIA/agents/reference_agent 2025-11-30T08:19:25,474 copying CASSIA/agents/reference_agent/reference_agent.py -> build/lib/CASSIA/agents/reference_agent 2025-11-30T08:19:25,477 copying CASSIA/agents/reference_agent/__init__.py -> build/lib/CASSIA/agents/reference_agent 2025-11-30T08:19:25,478 copying CASSIA/agents/reference_agent/utils.py -> build/lib/CASSIA/agents/reference_agent 2025-11-30T08:19:25,481 copying CASSIA/agents/reference_agent/section_extractor.py -> build/lib/CASSIA/agents/reference_agent 2025-11-30T08:19:25,483 running egg_info 2025-11-30T08:19:25,511 writing CASSIA.egg-info/PKG-INFO 2025-11-30T08:19:25,515 writing dependency_links to CASSIA.egg-info/dependency_links.txt 2025-11-30T08:19:25,517 writing requirements to CASSIA.egg-info/requires.txt 2025-11-30T08:19:25,518 writing top-level names to CASSIA.egg-info/top_level.txt 2025-11-30T08:19:25,564 reading manifest file 'CASSIA.egg-info/SOURCES.txt' 2025-11-30T08:19:25,577 writing manifest file 'CASSIA.egg-info/SOURCES.txt' 2025-11-30T08:19:25,588 copying CASSIA/data/processed.csv -> build/lib/CASSIA/data 2025-11-30T08:19:25,590 copying CASSIA/data/subcluster_results.csv -> build/lib/CASSIA/data 2025-11-30T08:19:25,595 copying CASSIA/data/unprocessed.csv -> build/lib/CASSIA/data 2025-11-30T08:19:25,902 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-11-30T08:19:25,903 !! 2025-11-30T08:19:25,904 ******************************************************************************** 2025-11-30T08:19:25,905 Please avoid running ``setup.py`` directly. 2025-11-30T08:19:25,906 Instead, use pypa/build, pypa/installer or other 2025-11-30T08:19:25,906 standards-based tools. 2025-11-30T08:19:25,907 This deprecation is overdue, please update your project and remove deprecated 2025-11-30T08:19:25,908 calls to avoid build errors in the future. 2025-11-30T08:19:25,909 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-11-30T08:19:25,909 ******************************************************************************** 2025-11-30T08:19:25,910 !! 2025-11-30T08:19:25,910 self.initialize_options() 2025-11-30T08:19:25,930 installing to build/bdist.linux-armv7l/wheel 2025-11-30T08:19:25,931 running install 2025-11-30T08:19:25,955 running install_lib 2025-11-30T08:19:25,981 creating build/bdist.linux-armv7l/wheel 2025-11-30T08:19:25,984 creating build/bdist.linux-armv7l/wheel/CASSIA 2025-11-30T08:19:25,985 creating build/bdist.linux-armv7l/wheel/CASSIA/pipeline 2025-11-30T08:19:25,986 copying build/lib/CASSIA/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/./CASSIA/pipeline 2025-11-30T08:19:25,989 copying build/lib/CASSIA/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/pipeline 2025-11-30T08:19:25,991 copying build/lib/CASSIA/LLM_evaluation_test.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-11-30T08:19:25,994 copying build/lib/CASSIA/generate_comparison.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-11-30T08:19:25,997 creating build/bdist.linux-armv7l/wheel/CASSIA/reports 2025-11-30T08:19:25,998 copying build/lib/CASSIA/reports/generate_reports.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-11-30T08:19:26,002 copying build/lib/CASSIA/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-11-30T08:19:26,004 copying build/lib/CASSIA/reports/generate_hypothesis_report.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-11-30T08:19:26,006 copying build/lib/CASSIA/reports/generate_batch_report.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-11-30T08:19:26,010 creating build/bdist.linux-armv7l/wheel/CASSIA/hypothesis 2025-11-30T08:19:26,011 copying build/lib/CASSIA/hypothesis/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/hypothesis 2025-11-30T08:19:26,013 copying build/lib/CASSIA/hypothesis/summarize_hypothesis_runs.py -> build/bdist.linux-armv7l/wheel/./CASSIA/hypothesis 2025-11-30T08:19:26,015 copying build/lib/CASSIA/hypothesis/hypothesis_generation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/hypothesis 2025-11-30T08:19:26,018 creating build/bdist.linux-armv7l/wheel/CASSIA/config 2025-11-30T08:19:26,018 copying build/lib/CASSIA/config/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/config 2025-11-30T08:19:26,020 copying build/lib/CASSIA/config/set_api_keys.py -> build/bdist.linux-armv7l/wheel/./CASSIA/config 2025-11-30T08:19:26,023 creating build/bdist.linux-armv7l/wheel/CASSIA/engine 2025-11-30T08:19:26,024 copying build/lib/CASSIA/engine/tools_function.py -> build/bdist.linux-armv7l/wheel/./CASSIA/engine 2025-11-30T08:19:26,026 copying build/lib/CASSIA/engine/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/engine 2025-11-30T08:19:26,028 copying build/lib/CASSIA/engine/main_function_code.py -> build/bdist.linux-armv7l/wheel/./CASSIA/engine 2025-11-30T08:19:26,032 creating build/bdist.linux-armv7l/wheel/CASSIA/core 2025-11-30T08:19:26,033 copying build/lib/CASSIA/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,035 copying build/lib/CASSIA/core/model_settings.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,037 copying build/lib/CASSIA/core/marker_utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,040 copying build/lib/CASSIA/core/progress_tracker.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,042 copying build/lib/CASSIA/core/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,044 copying build/lib/CASSIA/core/utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,046 copying build/lib/CASSIA/core/logging_config.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,048 copying build/lib/CASSIA/core/validation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,050 copying build/lib/CASSIA/core/llm_utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-11-30T08:19:26,053 copying build/lib/CASSIA/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-11-30T08:19:26,056 creating build/bdist.linux-armv7l/wheel/CASSIA/imaging 2025-11-30T08:19:26,056 copying build/lib/CASSIA/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/imaging 2025-11-30T08:19:26,058 copying build/lib/CASSIA/imaging/llm_image.py -> build/bdist.linux-armv7l/wheel/./CASSIA/imaging 2025-11-30T08:19:26,061 creating build/bdist.linux-armv7l/wheel/CASSIA/data 2025-11-30T08:19:26,062 copying build/lib/CASSIA/data/processed.csv -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-11-30T08:19:26,064 copying build/lib/CASSIA/data/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-11-30T08:19:26,066 copying build/lib/CASSIA/data/subcluster_results.csv -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-11-30T08:19:26,070 copying build/lib/CASSIA/data/unprocessed.csv -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-11-30T08:19:26,132 creating build/bdist.linux-armv7l/wheel/CASSIA/evaluation 2025-11-30T08:19:26,133 copying build/lib/CASSIA/evaluation/cell_type_comparison.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-11-30T08:19:26,137 copying build/lib/CASSIA/evaluation/scoring.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-11-30T08:19:26,139 copying build/lib/CASSIA/evaluation/LLM_evaluation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-11-30T08:19:26,142 copying build/lib/CASSIA/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-11-30T08:19:26,145 creating build/bdist.linux-armv7l/wheel/CASSIA/agents 2025-11-30T08:19:26,146 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/annotation_boost 2025-11-30T08:19:26,148 copying build/lib/CASSIA/agents/annotation_boost/annotation_boost.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/annotation_boost 2025-11-30T08:19:26,152 copying build/lib/CASSIA/agents/annotation_boost/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/annotation_boost 2025-11-30T08:19:26,154 copying build/lib/CASSIA/agents/annotation_boost/super_annotation_boost.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/annotation_boost 2025-11-30T08:19:26,160 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/merging 2025-11-30T08:19:26,161 copying build/lib/CASSIA/agents/merging/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/merging 2025-11-30T08:19:26,163 copying build/lib/CASSIA/agents/merging/merging_annotation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/merging 2025-11-30T08:19:26,165 copying build/lib/CASSIA/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents 2025-11-30T08:19:26,168 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/uncertainty 2025-11-30T08:19:26,169 copying build/lib/CASSIA/agents/uncertainty/Uncertainty_quantification.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/uncertainty 2025-11-30T08:19:26,172 copying build/lib/CASSIA/agents/uncertainty/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/uncertainty 2025-11-30T08:19:26,175 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/subclustering 2025-11-30T08:19:26,176 copying build/lib/CASSIA/agents/subclustering/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/subclustering 2025-11-30T08:19:26,178 copying build/lib/CASSIA/agents/subclustering/subclustering.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/subclustering 2025-11-30T08:19:26,181 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/reference_agent 2025-11-30T08:19:26,182 copying build/lib/CASSIA/agents/reference_agent/complexity_scorer.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-11-30T08:19:26,184 copying build/lib/CASSIA/agents/reference_agent/reference_selector.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-11-30T08:19:26,187 copying build/lib/CASSIA/agents/reference_agent/reference_agent.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-11-30T08:19:26,189 copying build/lib/CASSIA/agents/reference_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-11-30T08:19:26,191 copying build/lib/CASSIA/agents/reference_agent/utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-11-30T08:19:26,193 copying build/lib/CASSIA/agents/reference_agent/section_extractor.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-11-30T08:19:26,196 creating build/bdist.linux-armv7l/wheel/CASSIA/comparison 2025-11-30T08:19:26,196 copying build/lib/CASSIA/comparison/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/comparison 2025-11-30T08:19:26,198 copying build/lib/CASSIA/comparison/symphony_compare.py -> build/bdist.linux-armv7l/wheel/./CASSIA/comparison 2025-11-30T08:19:26,201 copying build/lib/CASSIA/CASSIA_python_tutorial.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-11-30T08:19:26,205 copying build/lib/CASSIA/LLM_evaluation_getscore.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-11-30T08:19:26,207 creating build/bdist.linux-armv7l/wheel/CASSIA/reference_agent 2025-11-30T08:19:26,208 copying build/lib/CASSIA/reference_agent/complexity_scorer.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-11-30T08:19:26,211 copying build/lib/CASSIA/reference_agent/reference_selector.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-11-30T08:19:26,213 copying build/lib/CASSIA/reference_agent/reference_agent.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-11-30T08:19:26,216 copying build/lib/CASSIA/reference_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-11-30T08:19:26,218 copying build/lib/CASSIA/reference_agent/utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-11-30T08:19:26,220 copying build/lib/CASSIA/reference_agent/section_extractor.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-11-30T08:19:26,222 copying build/lib/CASSIA/run_full_test.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-11-30T08:19:26,224 running install_egg_info 2025-11-30T08:19:26,257 Copying CASSIA.egg-info to build/bdist.linux-armv7l/wheel/./CASSIA-0.3.1.dev5-py3.11.egg-info 2025-11-30T08:19:26,267 running install_scripts 2025-11-30T08:19:26,276 creating build/bdist.linux-armv7l/wheel/cassia-0.3.1.dev5.dist-info/WHEEL 2025-11-30T08:19:26,278 creating '/tmp/pip-wheel-6p4dkl5e/cassia-0.3.1.dev5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-11-30T08:19:26,290 adding 'CASSIA/CASSIA_python_tutorial.py' 2025-11-30T08:19:26,292 adding 'CASSIA/LLM_evaluation_getscore.py' 2025-11-30T08:19:26,296 adding 'CASSIA/LLM_evaluation_test.py' 2025-11-30T08:19:26,297 adding 'CASSIA/__init__.py' 2025-11-30T08:19:26,300 adding 'CASSIA/generate_comparison.py' 2025-11-30T08:19:26,302 adding 'CASSIA/run_full_test.py' 2025-11-30T08:19:26,303 adding 'CASSIA/agents/__init__.py' 2025-11-30T08:19:26,305 adding 'CASSIA/agents/annotation_boost/__init__.py' 2025-11-30T08:19:26,315 adding 'CASSIA/agents/annotation_boost/annotation_boost.py' 2025-11-30T08:19:26,328 adding 'CASSIA/agents/annotation_boost/super_annotation_boost.py' 2025-11-30T08:19:26,331 adding 'CASSIA/agents/merging/__init__.py' 2025-11-30T08:19:26,333 adding 'CASSIA/agents/merging/merging_annotation.py' 2025-11-30T08:19:26,335 adding 'CASSIA/agents/reference_agent/__init__.py' 2025-11-30T08:19:26,337 adding 'CASSIA/agents/reference_agent/complexity_scorer.py' 2025-11-30T08:19:26,339 adding 'CASSIA/agents/reference_agent/reference_agent.py' 2025-11-30T08:19:26,342 adding 'CASSIA/agents/reference_agent/reference_selector.py' 2025-11-30T08:19:26,344 adding 'CASSIA/agents/reference_agent/section_extractor.py' 2025-11-30T08:19:26,345 adding 'CASSIA/agents/reference_agent/utils.py' 2025-11-30T08:19:26,347 adding 'CASSIA/agents/subclustering/__init__.py' 2025-11-30T08:19:26,350 adding 'CASSIA/agents/subclustering/subclustering.py' 2025-11-30T08:19:26,358 adding 'CASSIA/agents/uncertainty/Uncertainty_quantification.py' 2025-11-30T08:19:26,359 adding 'CASSIA/agents/uncertainty/__init__.py' 2025-11-30T08:19:26,361 adding 'CASSIA/comparison/__init__.py' 2025-11-30T08:19:26,364 adding 'CASSIA/comparison/symphony_compare.py' 2025-11-30T08:19:26,366 adding 'CASSIA/config/__init__.py' 2025-11-30T08:19:26,367 adding 'CASSIA/config/set_api_keys.py' 2025-11-30T08:19:26,369 adding 'CASSIA/core/__init__.py' 2025-11-30T08:19:26,370 adding 'CASSIA/core/exceptions.py' 2025-11-30T08:19:26,372 adding 'CASSIA/core/llm_utils.py' 2025-11-30T08:19:26,374 adding 'CASSIA/core/logging_config.py' 2025-11-30T08:19:26,376 adding 'CASSIA/core/marker_utils.py' 2025-11-30T08:19:26,378 adding 'CASSIA/core/model_settings.py' 2025-11-30T08:19:26,379 adding 'CASSIA/core/progress_tracker.py' 2025-11-30T08:19:26,381 adding 'CASSIA/core/utils.py' 2025-11-30T08:19:26,384 adding 'CASSIA/core/validation.py' 2025-11-30T08:19:26,386 adding 'CASSIA/data/__init__.py' 2025-11-30T08:19:26,387 adding 'CASSIA/data/processed.csv' 2025-11-30T08:19:26,417 adding 'CASSIA/data/subcluster_results.csv' 2025-11-30T08:19:27,068 adding 'CASSIA/data/unprocessed.csv' 2025-11-30T08:19:27,092 adding 'CASSIA/engine/__init__.py' 2025-11-30T08:19:27,095 adding 'CASSIA/engine/main_function_code.py' 2025-11-30T08:19:27,099 adding 'CASSIA/engine/tools_function.py' 2025-11-30T08:19:27,106 adding 'CASSIA/evaluation/LLM_evaluation.py' 2025-11-30T08:19:27,107 adding 'CASSIA/evaluation/__init__.py' 2025-11-30T08:19:27,111 adding 'CASSIA/evaluation/cell_type_comparison.py' 2025-11-30T08:19:27,114 adding 'CASSIA/evaluation/scoring.py' 2025-11-30T08:19:27,116 adding 'CASSIA/hypothesis/__init__.py' 2025-11-30T08:19:27,118 adding 'CASSIA/hypothesis/hypothesis_generation.py' 2025-11-30T08:19:27,120 adding 'CASSIA/hypothesis/summarize_hypothesis_runs.py' 2025-11-30T08:19:27,122 adding 'CASSIA/imaging/__init__.py' 2025-11-30T08:19:27,124 adding 'CASSIA/imaging/llm_image.py' 2025-11-30T08:19:27,125 adding 'CASSIA/pipeline/__init__.py' 2025-11-30T08:19:27,128 adding 'CASSIA/pipeline/pipeline.py' 2025-11-30T08:19:27,130 adding 'CASSIA/reference_agent/__init__.py' 2025-11-30T08:19:27,132 adding 'CASSIA/reference_agent/complexity_scorer.py' 2025-11-30T08:19:27,134 adding 'CASSIA/reference_agent/reference_agent.py' 2025-11-30T08:19:27,136 adding 'CASSIA/reference_agent/reference_selector.py' 2025-11-30T08:19:27,138 adding 'CASSIA/reference_agent/section_extractor.py' 2025-11-30T08:19:27,140 adding 'CASSIA/reference_agent/utils.py' 2025-11-30T08:19:27,142 adding 'CASSIA/reports/__init__.py' 2025-11-30T08:19:27,146 adding 'CASSIA/reports/generate_batch_report.py' 2025-11-30T08:19:27,148 adding 'CASSIA/reports/generate_hypothesis_report.py' 2025-11-30T08:19:27,152 adding 'CASSIA/reports/generate_reports.py' 2025-11-30T08:19:27,155 adding 'cassia-0.3.1.dev5.dist-info/METADATA' 2025-11-30T08:19:27,156 adding 'cassia-0.3.1.dev5.dist-info/WHEEL' 2025-11-30T08:19:27,157 adding 'cassia-0.3.1.dev5.dist-info/top_level.txt' 2025-11-30T08:19:27,158 adding 'cassia-0.3.1.dev5.dist-info/RECORD' 2025-11-30T08:19:27,175 removing build/bdist.linux-armv7l/wheel 2025-11-30T08:19:27,311 Building wheel for cassia (setup.py): finished with status 'done' 2025-11-30T08:19:27,329 Created wheel for cassia: filename=cassia-0.3.1.dev5-py3-none-any.whl size=1545271 sha256=a05494df3be28005ecfe1dbbf97be4915253c487124e6a21d8da527bfd0fae87 2025-11-30T08:19:27,330 Stored in directory: /tmp/pip-ephem-wheel-cache-qn9chanp/wheels/41/79/b8/5e8d83510f61c75a606c00999ee86c7d98077301e6274a28bc 2025-11-30T08:19:27,343 Successfully built cassia 2025-11-30T08:19:27,382 Removed build tracker: '/tmp/pip-build-tracker-ldx5e37h'