2025-12-02T06:04:13,823 Created temporary directory: /tmp/pip-ephem-wheel-cache-_brwm0sb 2025-12-02T06:04:13,825 Created temporary directory: /tmp/pip-build-tracker-xlcnes42 2025-12-02T06:04:13,826 Initialized build tracking at /tmp/pip-build-tracker-xlcnes42 2025-12-02T06:04:13,826 Created build tracker: /tmp/pip-build-tracker-xlcnes42 2025-12-02T06:04:13,826 Entered build tracker: /tmp/pip-build-tracker-xlcnes42 2025-12-02T06:04:13,827 Created temporary directory: /tmp/pip-wheel-si516bym 2025-12-02T06:04:13,830 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-02T06:04:13,833 Created temporary directory: /tmp/pip-ephem-wheel-cache-v5q1mh3w 2025-12-02T06:04:13,855 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-02T06:04:13,858 2 location(s) to search for versions of cassia: 2025-12-02T06:04:13,858 * https://pypi.org/simple/cassia/ 2025-12-02T06:04:13,858 * https://www.piwheels.org/simple/cassia/ 2025-12-02T06:04:13,859 Fetching project page and analyzing links: https://pypi.org/simple/cassia/ 2025-12-02T06:04:13,860 Getting page https://pypi.org/simple/cassia/ 2025-12-02T06:04:13,861 Found index url https://pypi.org/simple 2025-12-02T06:04:14,073 Fetched page https://pypi.org/simple/cassia/ as application/vnd.pypi.simple.v1+json 2025-12-02T06:04:14,079 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/fd/14/94da6522b1364498cddd2c537019fc450393500cdc692b689297115da8ec/CASSIA-0.1-py3-none-any.whl (from https://pypi.org/simple/cassia/) 2025-12-02T06:04:14,080 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/f7/1b/6997afb5835697ec0ef343b4ad8c02d0a29f3b86e89705d36ce76f95e311/CASSIA-0.1.0-py3-none-any.whl (from https://pypi.org/simple/cassia/) 2025-12-02T06:04:14,080 Found link https://files.pythonhosted.org/packages/26/97/db8e55429eee275f757c4447b74a395a0e5c21922c4f502d93f0977ae9b2/cassia-0.1.tar.gz (from https://pypi.org/simple/cassia/), version: 0.1 2025-12-02T06:04:14,081 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/bd/f9/d0cd59dd7ce3d19c2ffb54d448002a2396640796d331474044d229129192/CASSIA-0.1.1-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,082 Found link https://files.pythonhosted.org/packages/80/fa/494a5d4035fd6e11e7d80197728297196f244c54a072cf72d65ab0345b98/cassia-0.1.1.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.1 2025-12-02T06:04:14,083 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/6f/d8/4900dc3805e66254667d349f4d51c8ac8a5342ca145785e5b9d0f80e3aa1/CASSIA-0.1.2-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,084 Found link https://files.pythonhosted.org/packages/36/6b/b9f052c0de80cfab4026b64a8c0a2042c46275aba336623484a3013233f8/cassia-0.1.2.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.2 2025-12-02T06:04:14,085 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/dd/a7/23e6df5395de019994180ba12dfda49d85702fe01d3635ccf230133a76d5/CASSIA-0.1.3-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,086 Found link https://files.pythonhosted.org/packages/30/6c/a3d59df5aba1a664d3ec3494dfabc008a35f2391b095545c6de517345699/cassia-0.1.3.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.3 2025-12-02T06:04:14,087 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/73/95/c7a43ea77725d76db542aa209815aade50c2a857c320aa49a30d9b30311b/CASSIA-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,088 Found link https://files.pythonhosted.org/packages/b8/ac/bfc205400bd5a1856ef48e20a56f78971cdb98f6b7681936d0a8d36c5ad9/cassia-0.1.4.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.4 2025-12-02T06:04:14,089 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/58/a5/4c80ef7639de67ddcd728825d7c0054cb0f11ae6494e3c53b83ea0dd4a8c/CASSIA-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,089 Found link https://files.pythonhosted.org/packages/35/92/abce78e33564190569868bfa24fa1bb57197c46a56e245c04b674849c4ad/cassia-0.1.5.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.5 2025-12-02T06:04:14,090 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/b7/da/dff3b6ffc6a6958de824b5ca680bc8d0543799343ccc4a45f2aae940941a/CASSIA-0.1.6-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,091 Found link https://files.pythonhosted.org/packages/e8/b6/f39d8bf9410a597b9ff10da7a4a8a67939aa2d33214d20db4d645a1cec44/cassia-0.1.6.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.6 2025-12-02T06:04:14,091 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/96/1f/bb55e307a91d58477954d8786da585b9b4c4952bb3024a04cfe9461b9be9/CASSIA-0.1.7-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,092 Found link https://files.pythonhosted.org/packages/33/42/7ee57e8e2f32734268e4b486e0ea072869996ea2f0736fcc8502fbe28ccf/cassia-0.1.7.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.7 2025-12-02T06:04:14,093 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/70/04/7c91cc5853ad95a37f922e401379f6b618ade43b11445eef018cfb436d56/CASSIA-0.1.8-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,094 Found link https://files.pythonhosted.org/packages/5d/16/7c43c97b5902f6fd7c1be4d726071a66cc65a2ba85880aba619f486d12a0/cassia-0.1.8.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.8 2025-12-02T06:04:14,095 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/70/da/c5c1418310e8615c77ad99119af127f3ac2bdb21d5c69725df82583ca76e/CASSIA-0.1.9-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,095 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/5a/81/dd2738b5a33767ed19eee3c6add0bc13397e7bc1144e82f045762875feee/cassia-0.1.9-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,096 Found link https://files.pythonhosted.org/packages/fa/c4/1d279642d823e5fb7816e5dc0c9cf96b7256f3cabc3422762a1c64f9d5b4/cassia-0.1.9.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.8), version: 0.1.9 2025-12-02T06:04:14,097 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/4d/89/acd0978a3887e8b2fbf2d13dbf2cae3c19e3a08d0ddb2556775382b3be6b/cassia-0.2.0-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,098 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/8c/7d/3a7f158a1eaacbc08841d040134a21f9f1fbdfe6626957b1859bd2f9ab33/cassia-0.3.1.dev5-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.9) 2025-12-02T06:04:14,098 Found link https://files.pythonhosted.org/packages/cf/72/ca0b05784b7d668e4a4db6f638a3d7755898428d4db3e16b6cb050f6b6e2/cassia-0.3.1.dev5.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.9), version: 0.3.1.dev5 2025-12-02T06:04:14,099 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/d5/49/cf25a7220924c494be409d4fedc2a0033036e2ab5969c426fb23a5d68e71/cassia-0.3.1-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.9) 2025-12-02T06:04:14,100 Found link https://files.pythonhosted.org/packages/c0/87/f4a8fc33d6d1d21317d07ca08e896e88a14f444c822bbac3156303bcc324/cassia-0.3.1.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.9), version: 0.3.1 2025-12-02T06:04:14,101 Skipping link: No binaries permitted for cassia: https://files.pythonhosted.org/packages/09/cb/15b1522b479d1d3c9b9b0974cbcda929d1b461846216e19dcb3e21bb8992/cassia-0.3.2-py3-none-any.whl (from https://pypi.org/simple/cassia/) (requires-python:>=3.9) 2025-12-02T06:04:14,102 Found link https://files.pythonhosted.org/packages/97/a3/cf67e557f6834ff73840c487e10a9f3da2984c5547c4fe78f533a8a4d81f/cassia-0.3.2.tar.gz (from https://pypi.org/simple/cassia/) (requires-python:>=3.9), version: 0.3.2 2025-12-02T06:04:14,103 Fetching project page and analyzing links: https://www.piwheels.org/simple/cassia/ 2025-12-02T06:04:14,103 Getting page https://www.piwheels.org/simple/cassia/ 2025-12-02T06:04:14,104 Found index url https://www.piwheels.org/simple 2025-12-02T06:04:14,297 Fetched page https://www.piwheels.org/simple/cassia/ as text/html 2025-12-02T06:04:14,302 Skipping link: No binaries permitted for cassia: https://www.piwheels.org/simple/cassia/cassia-0.3.1-py3-none-any.whl#sha256=23c05779907a878e9671bb268e9c289efeef9aae12d9fed32f154bab4801e7dc (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.9) 2025-12-02T06:04:14,302 Skipping link: No binaries permitted for cassia: https://www.piwheels.org/simple/cassia/cassia-0.3.1.dev5-py3-none-any.whl#sha256=a05494df3be28005ecfe1dbbf97be4915253c487124e6a21d8da527bfd0fae87 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.9) 2025-12-02T06:04:14,303 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.9-py3-none-any.whl#sha256=4c587602b1448b8326ae2da0164231e380dafd18476e24c360e0d5feab208609 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,303 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.8-py3-none-any.whl#sha256=cef2f4adcf97a44f0f82dd394894647453f715df43e0f5856d81585be13c751b (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,304 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.7-py3-none-any.whl#sha256=46ffccf6ecab46768cce8957600e3f5bb1acb23dbcca70881c3ab046159e76a6 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,305 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.6-py3-none-any.whl#sha256=e677bff5ce5ec53e01b7f460be6137747a33b853bdacbb1fa3d11f02762ae789 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,305 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.5-py3-none-any.whl#sha256=c1fa353a8507b7eca9619d54936424e38712e556ac918e547bb5404d1ad82fa3 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,306 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.4-py3-none-any.whl#sha256=123d4ecb5c6db6bf550344141a0cdc4fc41e704b0a40f39833d42d413e0e023d (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,307 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.3-py3-none-any.whl#sha256=8199c427ae36776b6c0278e67653729e138fb30e0a7769a9d13a85457163cc56 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,307 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.2-py3-none-any.whl#sha256=6d708d28ac90607cc607a0eef783d50c308e58d3b6033e859b1dd9b9e43e13a6 (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,308 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1.1-py3-none-any.whl#sha256=dec9df705c4c727b15a27e8e00e5e5a596dfec5a1606399d07c55f3014e3966a (from https://www.piwheels.org/simple/cassia/) (requires-python:>=3.8) 2025-12-02T06:04:14,309 Skipping link: No binaries permitted for cassia: https://archive1.piwheels.org/simple/cassia/CASSIA-0.1-py3-none-any.whl#sha256=56cd7ee82de55f6979e4830559b1b507ee28ff730829f8effcbad8a045873a5a (from https://www.piwheels.org/simple/cassia/) 2025-12-02T06:04:14,309 Skipping link: not a file: https://www.piwheels.org/simple/cassia/ 2025-12-02T06:04:14,310 Skipping link: not a file: https://pypi.org/simple/cassia/ 2025-12-02T06:04:14,332 Given no hashes to check 1 links for project 'cassia': discarding no candidates 2025-12-02T06:04:14,349 Collecting cassia==0.3.2 2025-12-02T06:04:14,352 Created temporary directory: /tmp/pip-unpack-1uo4_zi9 2025-12-02T06:04:14,566 Downloading cassia-0.3.2.tar.gz (1.5 MB) 2025-12-02T06:04:15,140 Added cassia==0.3.2 from https://files.pythonhosted.org/packages/97/a3/cf67e557f6834ff73840c487e10a9f3da2984c5547c4fe78f533a8a4d81f/cassia-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-xlcnes42' 2025-12-02T06:04:15,141 Running setup.py (path:/tmp/pip-wheel-si516bym/cassia_506224b2f9cd4662927529d828496851/setup.py) egg_info for package cassia 2025-12-02T06:04:15,142 Created temporary directory: /tmp/pip-pip-egg-info-i8hwccc9 2025-12-02T06:04:15,143 Preparing metadata (setup.py): started 2025-12-02T06:04:15,144 Running command python setup.py egg_info 2025-12-02T06:04:16,045 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-02T06:04:16,046 !! 2025-12-02T06:04:16,047 ******************************************************************************** 2025-12-02T06:04:16,047 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-02T06:04:16,049 License :: OSI Approved :: MIT License 2025-12-02T06:04:16,050 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-02T06:04:16,051 ******************************************************************************** 2025-12-02T06:04:16,052 !! 2025-12-02T06:04:16,053 self._finalize_license_expression() 2025-12-02T06:04:16,079 running egg_info 2025-12-02T06:04:16,106 creating /tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info 2025-12-02T06:04:16,107 writing /tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info/PKG-INFO 2025-12-02T06:04:16,111 writing dependency_links to /tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info/dependency_links.txt 2025-12-02T06:04:16,113 writing requirements to /tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info/requires.txt 2025-12-02T06:04:16,114 writing top-level names to /tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info/top_level.txt 2025-12-02T06:04:16,115 writing manifest file '/tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info/SOURCES.txt' 2025-12-02T06:04:16,221 reading manifest file '/tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info/SOURCES.txt' 2025-12-02T06:04:16,227 writing manifest file '/tmp/pip-pip-egg-info-i8hwccc9/CASSIA.egg-info/SOURCES.txt' 2025-12-02T06:04:16,335 Preparing metadata (setup.py): finished with status 'done' 2025-12-02T06:04:16,339 Source in /tmp/pip-wheel-si516bym/cassia_506224b2f9cd4662927529d828496851 has version 0.3.2, which satisfies requirement cassia==0.3.2 from https://files.pythonhosted.org/packages/97/a3/cf67e557f6834ff73840c487e10a9f3da2984c5547c4fe78f533a8a4d81f/cassia-0.3.2.tar.gz 2025-12-02T06:04:16,340 Removed cassia==0.3.2 from https://files.pythonhosted.org/packages/97/a3/cf67e557f6834ff73840c487e10a9f3da2984c5547c4fe78f533a8a4d81f/cassia-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-xlcnes42' 2025-12-02T06:04:16,346 Created temporary directory: /tmp/pip-unpack-w4uy3c3_ 2025-12-02T06:04:16,347 Building wheels for collected packages: cassia 2025-12-02T06:04:16,352 Created temporary directory: /tmp/pip-wheel-9408tvf7 2025-12-02T06:04:16,352 Building wheel for cassia (setup.py): started 2025-12-02T06:04:16,353 Destination directory: /tmp/pip-wheel-9408tvf7 2025-12-02T06:04:16,354 Running command python setup.py bdist_wheel 2025-12-02T06:04:17,193 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-02T06:04:17,193 !! 2025-12-02T06:04:17,194 ******************************************************************************** 2025-12-02T06:04:17,194 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-02T06:04:17,195 License :: OSI Approved :: MIT License 2025-12-02T06:04:17,196 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-02T06:04:17,197 ******************************************************************************** 2025-12-02T06:04:17,198 !! 2025-12-02T06:04:17,198 self._finalize_license_expression() 2025-12-02T06:04:17,199 running bdist_wheel 2025-12-02T06:04:17,328 running build 2025-12-02T06:04:17,329 running build_py 2025-12-02T06:04:17,360 creating build/lib/CASSIA 2025-12-02T06:04:17,362 copying CASSIA/LLM_evaluation_test.py -> build/lib/CASSIA 2025-12-02T06:04:17,365 copying CASSIA/generate_comparison.py -> build/lib/CASSIA 2025-12-02T06:04:17,368 copying CASSIA/__init__.py -> build/lib/CASSIA 2025-12-02T06:04:17,370 copying CASSIA/CASSIA_python_tutorial.py -> build/lib/CASSIA 2025-12-02T06:04:17,374 copying CASSIA/LLM_evaluation_getscore.py -> build/lib/CASSIA 2025-12-02T06:04:17,376 copying CASSIA/run_full_test.py -> build/lib/CASSIA 2025-12-02T06:04:17,379 creating build/lib/CASSIA/pipeline 2025-12-02T06:04:17,380 copying CASSIA/pipeline/pipeline.py -> build/lib/CASSIA/pipeline 2025-12-02T06:04:17,383 copying CASSIA/pipeline/__init__.py -> build/lib/CASSIA/pipeline 2025-12-02T06:04:17,385 creating build/lib/CASSIA/reports 2025-12-02T06:04:17,386 copying CASSIA/reports/generate_reports.py -> build/lib/CASSIA/reports 2025-12-02T06:04:17,389 copying CASSIA/reports/__init__.py -> build/lib/CASSIA/reports 2025-12-02T06:04:17,391 copying CASSIA/reports/generate_hypothesis_report.py -> build/lib/CASSIA/reports 2025-12-02T06:04:17,395 copying CASSIA/reports/generate_batch_report.py -> build/lib/CASSIA/reports 2025-12-02T06:04:17,398 copying CASSIA/reports/generate_report_uncertainty.py -> build/lib/CASSIA/reports 2025-12-02T06:04:17,401 creating build/lib/CASSIA/hypothesis 2025-12-02T06:04:17,402 copying CASSIA/hypothesis/__init__.py -> build/lib/CASSIA/hypothesis 2025-12-02T06:04:17,404 copying CASSIA/hypothesis/summarize_hypothesis_runs.py -> build/lib/CASSIA/hypothesis 2025-12-02T06:04:17,407 copying CASSIA/hypothesis/hypothesis_generation.py -> build/lib/CASSIA/hypothesis 2025-12-02T06:04:17,410 creating build/lib/CASSIA/config 2025-12-02T06:04:17,411 copying CASSIA/config/__init__.py -> build/lib/CASSIA/config 2025-12-02T06:04:17,413 copying CASSIA/config/set_api_keys.py -> build/lib/CASSIA/config 2025-12-02T06:04:17,415 creating build/lib/CASSIA/engine 2025-12-02T06:04:17,416 copying CASSIA/engine/tools_function.py -> build/lib/CASSIA/engine 2025-12-02T06:04:17,419 copying CASSIA/engine/__init__.py -> build/lib/CASSIA/engine 2025-12-02T06:04:17,421 copying CASSIA/engine/main_function_code.py -> build/lib/CASSIA/engine 2025-12-02T06:04:17,424 creating build/lib/CASSIA/core 2025-12-02T06:04:17,425 copying CASSIA/core/exceptions.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,427 copying CASSIA/core/model_settings.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,430 copying CASSIA/core/marker_utils.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,432 copying CASSIA/core/progress_tracker.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,434 copying CASSIA/core/__init__.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,436 copying CASSIA/core/utils.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,438 copying CASSIA/core/logging_config.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,440 copying CASSIA/core/validation.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,443 copying CASSIA/core/llm_utils.py -> build/lib/CASSIA/core 2025-12-02T06:04:17,445 creating build/lib/CASSIA/imaging 2025-12-02T06:04:17,446 copying CASSIA/imaging/__init__.py -> build/lib/CASSIA/imaging 2025-12-02T06:04:17,448 copying CASSIA/imaging/llm_image.py -> build/lib/CASSIA/imaging 2025-12-02T06:04:17,451 creating build/lib/CASSIA/data 2025-12-02T06:04:17,452 copying CASSIA/data/__init__.py -> build/lib/CASSIA/data 2025-12-02T06:04:17,454 creating build/lib/CASSIA/evaluation 2025-12-02T06:04:17,455 copying CASSIA/evaluation/cell_type_comparison.py -> build/lib/CASSIA/evaluation 2025-12-02T06:04:17,458 copying CASSIA/evaluation/scoring.py -> build/lib/CASSIA/evaluation 2025-12-02T06:04:17,460 copying CASSIA/evaluation/LLM_evaluation.py -> build/lib/CASSIA/evaluation 2025-12-02T06:04:17,464 copying CASSIA/evaluation/__init__.py -> build/lib/CASSIA/evaluation 2025-12-02T06:04:17,466 creating build/lib/CASSIA/agents 2025-12-02T06:04:17,467 copying CASSIA/agents/__init__.py -> build/lib/CASSIA/agents 2025-12-02T06:04:17,469 creating build/lib/CASSIA/comparison 2025-12-02T06:04:17,470 copying CASSIA/comparison/__init__.py -> build/lib/CASSIA/comparison 2025-12-02T06:04:17,472 copying CASSIA/comparison/symphony_compare.py -> build/lib/CASSIA/comparison 2025-12-02T06:04:17,475 creating build/lib/CASSIA/reference_agent 2025-12-02T06:04:17,476 copying CASSIA/reference_agent/complexity_scorer.py -> build/lib/CASSIA/reference_agent 2025-12-02T06:04:17,479 copying CASSIA/reference_agent/reference_selector.py -> build/lib/CASSIA/reference_agent 2025-12-02T06:04:17,481 copying CASSIA/reference_agent/reference_agent.py -> build/lib/CASSIA/reference_agent 2025-12-02T06:04:17,484 copying CASSIA/reference_agent/__init__.py -> build/lib/CASSIA/reference_agent 2025-12-02T06:04:17,486 copying CASSIA/reference_agent/utils.py -> build/lib/CASSIA/reference_agent 2025-12-02T06:04:17,488 copying CASSIA/reference_agent/section_extractor.py -> build/lib/CASSIA/reference_agent 2025-12-02T06:04:17,491 creating build/lib/CASSIA/agents/annotation_boost 2025-12-02T06:04:17,492 copying CASSIA/agents/annotation_boost/annotation_boost.py -> build/lib/CASSIA/agents/annotation_boost 2025-12-02T06:04:17,496 copying CASSIA/agents/annotation_boost/__init__.py -> build/lib/CASSIA/agents/annotation_boost 2025-12-02T06:04:17,498 copying CASSIA/agents/annotation_boost/super_annotation_boost.py -> build/lib/CASSIA/agents/annotation_boost 2025-12-02T06:04:17,503 creating build/lib/CASSIA/agents/merging 2025-12-02T06:04:17,504 copying CASSIA/agents/merging/__init__.py -> build/lib/CASSIA/agents/merging 2025-12-02T06:04:17,506 copying CASSIA/agents/merging/merging_annotation.py -> build/lib/CASSIA/agents/merging 2025-12-02T06:04:17,509 creating build/lib/CASSIA/agents/uncertainty 2025-12-02T06:04:17,511 copying CASSIA/agents/uncertainty/Uncertainty_quantification.py -> build/lib/CASSIA/agents/uncertainty 2025-12-02T06:04:17,514 copying CASSIA/agents/uncertainty/__init__.py -> build/lib/CASSIA/agents/uncertainty 2025-12-02T06:04:17,516 creating build/lib/CASSIA/agents/subclustering 2025-12-02T06:04:17,517 copying CASSIA/agents/subclustering/__init__.py -> build/lib/CASSIA/agents/subclustering 2025-12-02T06:04:17,519 copying CASSIA/agents/subclustering/subclustering.py -> build/lib/CASSIA/agents/subclustering 2025-12-02T06:04:17,523 creating build/lib/CASSIA/agents/reference_agent 2025-12-02T06:04:17,524 copying CASSIA/agents/reference_agent/complexity_scorer.py -> build/lib/CASSIA/agents/reference_agent 2025-12-02T06:04:17,527 copying CASSIA/agents/reference_agent/reference_selector.py -> build/lib/CASSIA/agents/reference_agent 2025-12-02T06:04:17,529 copying CASSIA/agents/reference_agent/reference_agent.py -> build/lib/CASSIA/agents/reference_agent 2025-12-02T06:04:17,532 copying CASSIA/agents/reference_agent/__init__.py -> build/lib/CASSIA/agents/reference_agent 2025-12-02T06:04:17,534 copying CASSIA/agents/reference_agent/utils.py -> build/lib/CASSIA/agents/reference_agent 2025-12-02T06:04:17,536 copying CASSIA/agents/reference_agent/section_extractor.py -> build/lib/CASSIA/agents/reference_agent 2025-12-02T06:04:17,538 running egg_info 2025-12-02T06:04:17,565 writing CASSIA.egg-info/PKG-INFO 2025-12-02T06:04:17,568 writing dependency_links to CASSIA.egg-info/dependency_links.txt 2025-12-02T06:04:17,570 writing requirements to CASSIA.egg-info/requires.txt 2025-12-02T06:04:17,571 writing top-level names to CASSIA.egg-info/top_level.txt 2025-12-02T06:04:17,616 reading manifest file 'CASSIA.egg-info/SOURCES.txt' 2025-12-02T06:04:17,629 writing manifest file 'CASSIA.egg-info/SOURCES.txt' 2025-12-02T06:04:17,640 copying CASSIA/data/processed.csv -> build/lib/CASSIA/data 2025-12-02T06:04:17,642 copying CASSIA/data/subcluster_results.csv -> build/lib/CASSIA/data 2025-12-02T06:04:17,647 copying CASSIA/data/unprocessed.csv -> build/lib/CASSIA/data 2025-12-02T06:04:17,746 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-12-02T06:04:17,746 !! 2025-12-02T06:04:17,748 ******************************************************************************** 2025-12-02T06:04:17,748 Please avoid running ``setup.py`` directly. 2025-12-02T06:04:17,749 Instead, use pypa/build, pypa/installer or other 2025-12-02T06:04:17,749 standards-based tools. 2025-12-02T06:04:17,750 This deprecation is overdue, please update your project and remove deprecated 2025-12-02T06:04:17,751 calls to avoid build errors in the future. 2025-12-02T06:04:17,752 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-12-02T06:04:17,752 ******************************************************************************** 2025-12-02T06:04:17,754 !! 2025-12-02T06:04:17,754 self.initialize_options() 2025-12-02T06:04:17,776 installing to build/bdist.linux-armv7l/wheel 2025-12-02T06:04:17,776 running install 2025-12-02T06:04:17,800 running install_lib 2025-12-02T06:04:17,827 creating build/bdist.linux-armv7l/wheel 2025-12-02T06:04:17,830 creating build/bdist.linux-armv7l/wheel/CASSIA 2025-12-02T06:04:17,831 creating build/bdist.linux-armv7l/wheel/CASSIA/pipeline 2025-12-02T06:04:17,833 copying build/lib/CASSIA/pipeline/pipeline.py -> build/bdist.linux-armv7l/wheel/./CASSIA/pipeline 2025-12-02T06:04:17,836 copying build/lib/CASSIA/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/pipeline 2025-12-02T06:04:17,837 copying build/lib/CASSIA/LLM_evaluation_test.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-12-02T06:04:17,840 copying build/lib/CASSIA/generate_comparison.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-12-02T06:04:17,843 creating build/bdist.linux-armv7l/wheel/CASSIA/reports 2025-12-02T06:04:17,844 copying build/lib/CASSIA/reports/generate_reports.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-12-02T06:04:17,847 copying build/lib/CASSIA/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-12-02T06:04:17,849 copying build/lib/CASSIA/reports/generate_hypothesis_report.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-12-02T06:04:17,851 copying build/lib/CASSIA/reports/generate_batch_report.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-12-02T06:04:17,854 copying build/lib/CASSIA/reports/generate_report_uncertainty.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reports 2025-12-02T06:04:17,857 creating build/bdist.linux-armv7l/wheel/CASSIA/hypothesis 2025-12-02T06:04:17,858 copying build/lib/CASSIA/hypothesis/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/hypothesis 2025-12-02T06:04:17,860 copying build/lib/CASSIA/hypothesis/summarize_hypothesis_runs.py -> build/bdist.linux-armv7l/wheel/./CASSIA/hypothesis 2025-12-02T06:04:17,862 copying build/lib/CASSIA/hypothesis/hypothesis_generation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/hypothesis 2025-12-02T06:04:17,865 creating build/bdist.linux-armv7l/wheel/CASSIA/config 2025-12-02T06:04:17,866 copying build/lib/CASSIA/config/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/config 2025-12-02T06:04:17,868 copying build/lib/CASSIA/config/set_api_keys.py -> build/bdist.linux-armv7l/wheel/./CASSIA/config 2025-12-02T06:04:17,870 creating build/bdist.linux-armv7l/wheel/CASSIA/engine 2025-12-02T06:04:17,871 copying build/lib/CASSIA/engine/tools_function.py -> build/bdist.linux-armv7l/wheel/./CASSIA/engine 2025-12-02T06:04:17,874 copying build/lib/CASSIA/engine/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/engine 2025-12-02T06:04:17,876 copying build/lib/CASSIA/engine/main_function_code.py -> build/bdist.linux-armv7l/wheel/./CASSIA/engine 2025-12-02T06:04:17,879 creating build/bdist.linux-armv7l/wheel/CASSIA/core 2025-12-02T06:04:17,880 copying build/lib/CASSIA/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,882 copying build/lib/CASSIA/core/model_settings.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,885 copying build/lib/CASSIA/core/marker_utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,887 copying build/lib/CASSIA/core/progress_tracker.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,889 copying build/lib/CASSIA/core/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,891 copying build/lib/CASSIA/core/utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,893 copying build/lib/CASSIA/core/logging_config.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,895 copying build/lib/CASSIA/core/validation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,898 copying build/lib/CASSIA/core/llm_utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/core 2025-12-02T06:04:17,900 copying build/lib/CASSIA/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-12-02T06:04:17,903 creating build/bdist.linux-armv7l/wheel/CASSIA/imaging 2025-12-02T06:04:17,904 copying build/lib/CASSIA/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/imaging 2025-12-02T06:04:17,906 copying build/lib/CASSIA/imaging/llm_image.py -> build/bdist.linux-armv7l/wheel/./CASSIA/imaging 2025-12-02T06:04:17,909 creating build/bdist.linux-armv7l/wheel/CASSIA/data 2025-12-02T06:04:17,910 copying build/lib/CASSIA/data/processed.csv -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-12-02T06:04:17,912 copying build/lib/CASSIA/data/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-12-02T06:04:17,914 copying build/lib/CASSIA/data/subcluster_results.csv -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-12-02T06:04:17,919 copying build/lib/CASSIA/data/unprocessed.csv -> build/bdist.linux-armv7l/wheel/./CASSIA/data 2025-12-02T06:04:17,983 creating build/bdist.linux-armv7l/wheel/CASSIA/evaluation 2025-12-02T06:04:17,984 copying build/lib/CASSIA/evaluation/cell_type_comparison.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-12-02T06:04:17,987 copying build/lib/CASSIA/evaluation/scoring.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-12-02T06:04:17,989 copying build/lib/CASSIA/evaluation/LLM_evaluation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-12-02T06:04:17,993 copying build/lib/CASSIA/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/evaluation 2025-12-02T06:04:17,996 creating build/bdist.linux-armv7l/wheel/CASSIA/agents 2025-12-02T06:04:17,997 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/annotation_boost 2025-12-02T06:04:17,999 copying build/lib/CASSIA/agents/annotation_boost/annotation_boost.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/annotation_boost 2025-12-02T06:04:18,003 copying build/lib/CASSIA/agents/annotation_boost/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/annotation_boost 2025-12-02T06:04:18,005 copying build/lib/CASSIA/agents/annotation_boost/super_annotation_boost.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/annotation_boost 2025-12-02T06:04:18,009 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/merging 2025-12-02T06:04:18,010 copying build/lib/CASSIA/agents/merging/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/merging 2025-12-02T06:04:18,012 copying build/lib/CASSIA/agents/merging/merging_annotation.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/merging 2025-12-02T06:04:18,015 copying build/lib/CASSIA/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents 2025-12-02T06:04:18,017 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/uncertainty 2025-12-02T06:04:18,018 copying build/lib/CASSIA/agents/uncertainty/Uncertainty_quantification.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/uncertainty 2025-12-02T06:04:18,021 copying build/lib/CASSIA/agents/uncertainty/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/uncertainty 2025-12-02T06:04:18,024 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/subclustering 2025-12-02T06:04:18,025 copying build/lib/CASSIA/agents/subclustering/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/subclustering 2025-12-02T06:04:18,027 copying build/lib/CASSIA/agents/subclustering/subclustering.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/subclustering 2025-12-02T06:04:18,030 creating build/bdist.linux-armv7l/wheel/CASSIA/agents/reference_agent 2025-12-02T06:04:18,031 copying build/lib/CASSIA/agents/reference_agent/complexity_scorer.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-12-02T06:04:18,034 copying build/lib/CASSIA/agents/reference_agent/reference_selector.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-12-02T06:04:18,036 copying build/lib/CASSIA/agents/reference_agent/reference_agent.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-12-02T06:04:18,039 copying build/lib/CASSIA/agents/reference_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-12-02T06:04:18,041 copying build/lib/CASSIA/agents/reference_agent/utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-12-02T06:04:18,043 copying build/lib/CASSIA/agents/reference_agent/section_extractor.py -> build/bdist.linux-armv7l/wheel/./CASSIA/agents/reference_agent 2025-12-02T06:04:18,046 creating build/bdist.linux-armv7l/wheel/CASSIA/comparison 2025-12-02T06:04:18,047 copying build/lib/CASSIA/comparison/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/comparison 2025-12-02T06:04:18,049 copying build/lib/CASSIA/comparison/symphony_compare.py -> build/bdist.linux-armv7l/wheel/./CASSIA/comparison 2025-12-02T06:04:18,052 copying build/lib/CASSIA/CASSIA_python_tutorial.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-12-02T06:04:18,056 copying build/lib/CASSIA/LLM_evaluation_getscore.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-12-02T06:04:18,058 creating build/bdist.linux-armv7l/wheel/CASSIA/reference_agent 2025-12-02T06:04:18,059 copying build/lib/CASSIA/reference_agent/complexity_scorer.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-12-02T06:04:18,062 copying build/lib/CASSIA/reference_agent/reference_selector.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-12-02T06:04:18,064 copying build/lib/CASSIA/reference_agent/reference_agent.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-12-02T06:04:18,067 copying build/lib/CASSIA/reference_agent/__init__.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-12-02T06:04:18,069 copying build/lib/CASSIA/reference_agent/utils.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-12-02T06:04:18,071 copying build/lib/CASSIA/reference_agent/section_extractor.py -> build/bdist.linux-armv7l/wheel/./CASSIA/reference_agent 2025-12-02T06:04:18,074 copying build/lib/CASSIA/run_full_test.py -> build/bdist.linux-armv7l/wheel/./CASSIA 2025-12-02T06:04:18,076 running install_egg_info 2025-12-02T06:04:18,109 Copying CASSIA.egg-info to build/bdist.linux-armv7l/wheel/./CASSIA-0.3.2-py3.11.egg-info 2025-12-02T06:04:18,119 running install_scripts 2025-12-02T06:04:18,128 creating build/bdist.linux-armv7l/wheel/cassia-0.3.2.dist-info/WHEEL 2025-12-02T06:04:18,130 creating '/tmp/pip-wheel-9408tvf7/cassia-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-02T06:04:18,142 adding 'CASSIA/CASSIA_python_tutorial.py' 2025-12-02T06:04:18,144 adding 'CASSIA/LLM_evaluation_getscore.py' 2025-12-02T06:04:18,147 adding 'CASSIA/LLM_evaluation_test.py' 2025-12-02T06:04:18,149 adding 'CASSIA/__init__.py' 2025-12-02T06:04:18,151 adding 'CASSIA/generate_comparison.py' 2025-12-02T06:04:18,153 adding 'CASSIA/run_full_test.py' 2025-12-02T06:04:18,155 adding 'CASSIA/agents/__init__.py' 2025-12-02T06:04:18,156 adding 'CASSIA/agents/annotation_boost/__init__.py' 2025-12-02T06:04:18,166 adding 'CASSIA/agents/annotation_boost/annotation_boost.py' 2025-12-02T06:04:18,179 adding 'CASSIA/agents/annotation_boost/super_annotation_boost.py' 2025-12-02T06:04:18,182 adding 'CASSIA/agents/merging/__init__.py' 2025-12-02T06:04:18,184 adding 'CASSIA/agents/merging/merging_annotation.py' 2025-12-02T06:04:18,186 adding 'CASSIA/agents/reference_agent/__init__.py' 2025-12-02T06:04:18,188 adding 'CASSIA/agents/reference_agent/complexity_scorer.py' 2025-12-02T06:04:18,190 adding 'CASSIA/agents/reference_agent/reference_agent.py' 2025-12-02T06:04:18,192 adding 'CASSIA/agents/reference_agent/reference_selector.py' 2025-12-02T06:04:18,194 adding 'CASSIA/agents/reference_agent/section_extractor.py' 2025-12-02T06:04:18,196 adding 'CASSIA/agents/reference_agent/utils.py' 2025-12-02T06:04:18,197 adding 'CASSIA/agents/subclustering/__init__.py' 2025-12-02T06:04:18,201 adding 'CASSIA/agents/subclustering/subclustering.py' 2025-12-02T06:04:18,208 adding 'CASSIA/agents/uncertainty/Uncertainty_quantification.py' 2025-12-02T06:04:18,209 adding 'CASSIA/agents/uncertainty/__init__.py' 2025-12-02T06:04:18,211 adding 'CASSIA/comparison/__init__.py' 2025-12-02T06:04:18,214 adding 'CASSIA/comparison/symphony_compare.py' 2025-12-02T06:04:18,215 adding 'CASSIA/config/__init__.py' 2025-12-02T06:04:18,217 adding 'CASSIA/config/set_api_keys.py' 2025-12-02T06:04:18,219 adding 'CASSIA/core/__init__.py' 2025-12-02T06:04:18,220 adding 'CASSIA/core/exceptions.py' 2025-12-02T06:04:18,222 adding 'CASSIA/core/llm_utils.py' 2025-12-02T06:04:18,223 adding 'CASSIA/core/logging_config.py' 2025-12-02T06:04:18,225 adding 'CASSIA/core/marker_utils.py' 2025-12-02T06:04:18,227 adding 'CASSIA/core/model_settings.py' 2025-12-02T06:04:18,229 adding 'CASSIA/core/progress_tracker.py' 2025-12-02T06:04:18,230 adding 'CASSIA/core/utils.py' 2025-12-02T06:04:18,233 adding 'CASSIA/core/validation.py' 2025-12-02T06:04:18,235 adding 'CASSIA/data/__init__.py' 2025-12-02T06:04:18,236 adding 'CASSIA/data/processed.csv' 2025-12-02T06:04:18,266 adding 'CASSIA/data/subcluster_results.csv' 2025-12-02T06:04:18,955 adding 'CASSIA/data/unprocessed.csv' 2025-12-02T06:04:18,979 adding 'CASSIA/engine/__init__.py' 2025-12-02T06:04:18,982 adding 'CASSIA/engine/main_function_code.py' 2025-12-02T06:04:18,986 adding 'CASSIA/engine/tools_function.py' 2025-12-02T06:04:18,992 adding 'CASSIA/evaluation/LLM_evaluation.py' 2025-12-02T06:04:18,994 adding 'CASSIA/evaluation/__init__.py' 2025-12-02T06:04:18,998 adding 'CASSIA/evaluation/cell_type_comparison.py' 2025-12-02T06:04:19,001 adding 'CASSIA/evaluation/scoring.py' 2025-12-02T06:04:19,002 adding 'CASSIA/hypothesis/__init__.py' 2025-12-02T06:04:19,005 adding 'CASSIA/hypothesis/hypothesis_generation.py' 2025-12-02T06:04:19,006 adding 'CASSIA/hypothesis/summarize_hypothesis_runs.py' 2025-12-02T06:04:19,008 adding 'CASSIA/imaging/__init__.py' 2025-12-02T06:04:19,010 adding 'CASSIA/imaging/llm_image.py' 2025-12-02T06:04:19,012 adding 'CASSIA/pipeline/__init__.py' 2025-12-02T06:04:19,014 adding 'CASSIA/pipeline/pipeline.py' 2025-12-02T06:04:19,016 adding 'CASSIA/reference_agent/__init__.py' 2025-12-02T06:04:19,018 adding 'CASSIA/reference_agent/complexity_scorer.py' 2025-12-02T06:04:19,020 adding 'CASSIA/reference_agent/reference_agent.py' 2025-12-02T06:04:19,022 adding 'CASSIA/reference_agent/reference_selector.py' 2025-12-02T06:04:19,024 adding 'CASSIA/reference_agent/section_extractor.py' 2025-12-02T06:04:19,026 adding 'CASSIA/reference_agent/utils.py' 2025-12-02T06:04:19,028 adding 'CASSIA/reports/__init__.py' 2025-12-02T06:04:19,032 adding 'CASSIA/reports/generate_batch_report.py' 2025-12-02T06:04:19,034 adding 'CASSIA/reports/generate_hypothesis_report.py' 2025-12-02T06:04:19,036 adding 'CASSIA/reports/generate_report_uncertainty.py' 2025-12-02T06:04:19,041 adding 'CASSIA/reports/generate_reports.py' 2025-12-02T06:04:19,043 adding 'cassia-0.3.2.dist-info/METADATA' 2025-12-02T06:04:19,044 adding 'cassia-0.3.2.dist-info/WHEEL' 2025-12-02T06:04:19,045 adding 'cassia-0.3.2.dist-info/top_level.txt' 2025-12-02T06:04:19,046 adding 'cassia-0.3.2.dist-info/RECORD' 2025-12-02T06:04:19,063 removing build/bdist.linux-armv7l/wheel 2025-12-02T06:04:19,195 Building wheel for cassia (setup.py): finished with status 'done' 2025-12-02T06:04:19,213 Created wheel for cassia: filename=cassia-0.3.2-py3-none-any.whl size=1551805 sha256=cfc4a3f0168f9bf5ff3b3e0599b3f6115003e76644a7d33ec72fb2a18418234e 2025-12-02T06:04:19,214 Stored in directory: /tmp/pip-ephem-wheel-cache-v5q1mh3w/wheels/c8/65/37/ce924e388452628aca8bd363387267dadd6df6c26119fea414 2025-12-02T06:04:19,226 Successfully built cassia 2025-12-02T06:04:19,284 Removed build tracker: '/tmp/pip-build-tracker-xlcnes42'