2025-12-03T09:18:56,630 Created temporary directory: /tmp/pip-ephem-wheel-cache-94s6b7zo 2025-12-03T09:18:56,632 Created temporary directory: /tmp/pip-build-tracker-1nbgsols 2025-12-03T09:18:56,632 Initialized build tracking at /tmp/pip-build-tracker-1nbgsols 2025-12-03T09:18:56,633 Created build tracker: /tmp/pip-build-tracker-1nbgsols 2025-12-03T09:18:56,633 Entered build tracker: /tmp/pip-build-tracker-1nbgsols 2025-12-03T09:18:56,634 Created temporary directory: /tmp/pip-wheel-jwc2_4ou 2025-12-03T09:18:56,637 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-03T09:18:56,639 Created temporary directory: /tmp/pip-ephem-wheel-cache-onp08snp 2025-12-03T09:18:56,663 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-03T09:18:56,667 2 location(s) to search for versions of xicommon: 2025-12-03T09:18:56,667 * https://pypi.org/simple/xicommon/ 2025-12-03T09:18:56,667 * https://www.piwheels.org/simple/xicommon/ 2025-12-03T09:18:56,668 Fetching project page and analyzing links: https://pypi.org/simple/xicommon/ 2025-12-03T09:18:56,669 Getting page https://pypi.org/simple/xicommon/ 2025-12-03T09:18:56,670 Found index url https://pypi.org/simple 2025-12-03T09:18:56,884 Fetched page https://pypi.org/simple/xicommon/ as application/vnd.pypi.simple.v1+json 2025-12-03T09:18:56,893 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/11/4b/24e68e6e2d923d1bae1cc35a78c09e787c67e5b72d3a99df8a06291963ca/xicommon-1.0.3rc1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,894 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/3a/ec/d0904bede98861e4150d1b5e8cf2eb99e1a3542eecb13d0f67e05ddf8611/xicommon-1.0.3rc1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,894 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/82/3d/841600e2a204f5919932b0e8b4e116833a0ceb4469fdb4f990ddce2d999d/xicommon-1.0.3rc1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,895 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/9d/e7/96d9d11c71f5df37180ef484885dd575f6c00b7e88e0e3c0afbcdcaa93a7/xicommon-1.0.3rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,895 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/9e/39/f967732a0c728dc5a0851946597110eb1520d29e163dd8e93a1b42b56a0a/xicommon-1.0.3rc1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,896 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/91/d8/cbee128f0ba9afbe16cd0955db4d8978e1aa02abb63bf0b713dd40dc1ba7/xicommon-1.0.3rc1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,897 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c0/49/52a3bf69fe0f2f220679cabdfe9e10b238bbe1022b17320e352e1e83e7cc/xicommon-1.0.3rc1-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,897 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/1e/25/47ee525df9205123843832363642d6c8eecd45c2d4ebf725e25d09fca490/xicommon-1.0.3rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,898 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/e4/c5/1cf163009e4ce54cf58384ed59eacb779ec3630924126198b2eb4f06dc46/xicommon-1.0.3rc1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,899 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/6a/26/93fc165059d68163c838be471068a1d8288d7fcd6239af215841460a200b/xicommon-1.0.3rc1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,899 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/59/c2/3352d20b5133ed8d1d0f4c6ea42b263a9cd2e7c31c3b075b0ca68a280be6/xicommon-1.0.3rc1-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,900 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c9/6d/c3a01029fad63e178ea191f59a7d7f63fbf8893001e2d47feb63abd0dfda/xicommon-1.0.3rc1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,901 Found link https://files.pythonhosted.org/packages/77/f3/b608d7de556dc016159e03740efe26725d182a0873967fbd62cfcd60a708/xicommon-1.0.3rc1.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.3rc1 2025-12-03T09:18:56,901 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/a9/2c/707899f1666fe8c374c3818d90fa633a34964ad499fb08011e9102c89a46/xicommon-1.0.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,902 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/50/15/b4bf4d8446882a5f4880e9d43651be6bebc574269d4288a61e35c53a6e4a/xicommon-1.0.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,902 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/57/a7/73b782734ac93d933c30be0990e85793448e34a55985809abec60a2f13e6/xicommon-1.0.4-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,903 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/bb/a5/a4ed2afd410b430d3d596163e335730d9d5c2d648f8701b4495b67ef6e9a/xicommon-1.0.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,904 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/a4/f8/c229632ce1d598abc38f31c5c1f291386883a5357e235ceffa32829d8033/xicommon-1.0.4-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,904 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/cf/9f/6cee7b5a18d36c4bd7abbbc68e03d8bf7b04dceb1807962e044858a55f36/xicommon-1.0.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,905 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/24/36/4c7a20af0d98f9883df5176e260c3c211a9514122850300e5ccd682eb24c/xicommon-1.0.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,905 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/0a/8e/e760db49c7b96cea46dad04f563f6a396d9dad7427fc2bb727a9ce1c7222/xicommon-1.0.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,906 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/d0/29/b9fbd74cacdf292749151bb0449c6aefd9caf4abf0dc9c367fc52bb87ecd/xicommon-1.0.4-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,907 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/e0/96/bf2760202ebca0607cf76eae1a227a5bac13724800b17051879386acab22/xicommon-1.0.4-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,907 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/f0/de/08a6e993d74702b8208cc34fb41ea669a789a43240dcb48702c2e4ac1157/xicommon-1.0.4-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,908 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/4c/16/3831af15cacd9f768767f0f29518c89d15621a82e2ca8721f56277554681/xicommon-1.0.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,908 Found link https://files.pythonhosted.org/packages/76/de/ff1a028a142b2e511f4a444f0ee056f991da701c16e9058fc8ef9bb0b839/xicommon-1.0.4.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.4 2025-12-03T09:18:56,909 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/a3/5c/0c8f8c445d13ee85f81473f781ae8bd5847d431c1456529ca4514d8b21f9/xicommon-1.0.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,910 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/08/8a/8cf3cc817eee976936e47bda18ef5fc2a86c57a1569acb2a758ede80bc58/xicommon-1.0.6-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,910 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/23/a5/69528dbadf947168db203a9de46b91fb9d5e1ac95e4bfe1ea94b2a984d65/xicommon-1.0.6-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,911 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/60/54/20bcb5dac15a6bfcfa7f95f36bd985d799a6f6ccfa7a48102057204cbfe4/xicommon-1.0.6-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,911 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/4e/ad/7ceec2720db53e3f35c8188e0a977b2e419583aaa4534e3a47780f366c81/xicommon-1.0.6-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,912 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/27/23/da2c91dabb347fed0e4d8b7285c315fe837299d071eedabb9b0e6e917c40/xicommon-1.0.6-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,913 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/70/4c/10d52e12176e6fbeb1a9429ba0485f60bb0e414696d7f0df2e1e600a393e/xicommon-1.0.6-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,913 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/aa/54/5713baa37821f51781eaa5f55b63ca3c3f498b10f950181cc43c0afeea14/xicommon-1.0.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,914 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/1b/0d/e69d619a723e4a25c41ab34b75a7b0b8a4d2de54a1fd96274a8697e23663/xicommon-1.0.6-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,914 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/f3/6a/bebc42a6f631284fae732dc7d07121ba82a4fc1e9fb4c8ca9bc977dc9b76/xicommon-1.0.6-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,915 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/65/61/c3f2eb7c81413b79e4de8dbe6a7c8bb82c82361a0e6c4692712a5ceb1e92/xicommon-1.0.6-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,916 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c7/80/669ad398e3712b709aa1b207688274cc6751f279c5ba426892b94c323ae1/xicommon-1.0.6-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:56,916 Found link https://files.pythonhosted.org/packages/20/1d/7283a59259afaf39a300912de235a0e43b31d2645cd177f7174c4d0104f0/xicommon-1.0.6.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.6 2025-12-03T09:18:56,917 Fetching project page and analyzing links: https://www.piwheels.org/simple/xicommon/ 2025-12-03T09:18:56,918 Getting page https://www.piwheels.org/simple/xicommon/ 2025-12-03T09:18:56,919 Found index url https://www.piwheels.org/simple 2025-12-03T09:18:57,110 Fetched page https://www.piwheels.org/simple/xicommon/ as text/html 2025-12-03T09:18:57,114 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp311-cp311-linux_armv6l.whl#sha256=abf452c977d9b9954118366e531164ab1eed5e1053b91ccc42929fc770e41c0c (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,114 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp311-cp311-linux_armv7l.whl#sha256=abf452c977d9b9954118366e531164ab1eed5e1053b91ccc42929fc770e41c0c (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,115 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp313-cp313-linux_armv6l.whl#sha256=90d7602df1d7aa33553c5b06e35870c304080e9f8a606a1892481613f775d031 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,115 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp313-cp313-linux_armv7l.whl#sha256=90d7602df1d7aa33553c5b06e35870c304080e9f8a606a1892481613f775d031 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,116 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp311-cp311-linux_armv6l.whl#sha256=761a5e877631f9c83264844fb826a70ba4c321b5e3162d82f6de9bd1b99b052e (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,117 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp311-cp311-linux_armv7l.whl#sha256=761a5e877631f9c83264844fb826a70ba4c321b5e3162d82f6de9bd1b99b052e (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,117 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp313-cp313-linux_armv6l.whl#sha256=6073e5fc6b8caea94b65ff757dd01271bd86ea18044eab364f9db54f077b3d8d (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,118 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp313-cp313-linux_armv7l.whl#sha256=6073e5fc6b8caea94b65ff757dd01271bd86ea18044eab364f9db54f077b3d8d (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T09:18:57,118 Skipping link: not a file: https://www.piwheels.org/simple/xicommon/ 2025-12-03T09:18:57,119 Skipping link: not a file: https://pypi.org/simple/xicommon/ 2025-12-03T09:18:57,138 Given no hashes to check 1 links for project 'xicommon': discarding no candidates 2025-12-03T09:18:57,156 Collecting xicommon==1.0.6 2025-12-03T09:18:57,159 Created temporary directory: /tmp/pip-unpack-_iamq8td 2025-12-03T09:18:57,371 Downloading xicommon-1.0.6.tar.gz (74.4 MB) 2025-12-03T09:19:11,049 Added xicommon==1.0.6 from https://files.pythonhosted.org/packages/20/1d/7283a59259afaf39a300912de235a0e43b31d2645cd177f7174c4d0104f0/xicommon-1.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-1nbgsols' 2025-12-03T09:19:11,058 Created temporary directory: /tmp/pip-build-env-5l3kr_3m 2025-12-03T09:19:11,063 Installing build dependencies: started 2025-12-03T09:19:11,064 Running command pip subprocess to install build dependencies 2025-12-03T09:19:12,227 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-03T09:19:12,847 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-03T09:19:12,869 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-03T09:19:14,646 Collecting setuptools>=42 2025-12-03T09:19:14,751 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-03T09:19:15,023 Collecting wheel 2025-12-03T09:19:15,040 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-12-03T09:19:15,374 Collecting setuptools_scm 2025-12-03T09:19:15,390 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-12-03T09:19:17,441 Collecting Cython>=3.0.0 2025-12-03T09:19:17,484 Using cached cython-3.2.2-cp39-abi3-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (2.9 MB) 2025-12-03T09:19:18,623 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T09:19:18,631 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T09:19:18,638 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T09:19:18,645 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T09:19:18,652 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T09:19:19,337 Collecting numpy>=1.20 2025-12-03T09:19:20,010 Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.5-cp311-cp311-linux_armv7l.whl (6.1 MB) 2025-12-03T09:19:20,386 Collecting packaging>=20 2025-12-03T09:19:20,403 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-03T09:19:23,374 Installing collected packages: wheel, setuptools, packaging, numpy, Cython, setuptools_scm 2025-12-03T09:19:23,617 Creating /tmp/pip-build-env-5l3kr_3m/overlay/local/bin 2025-12-03T09:19:23,619 changing mode of /tmp/pip-build-env-5l3kr_3m/overlay/local/bin/wheel to 755 2025-12-03T09:19:36,270 changing mode of /tmp/pip-build-env-5l3kr_3m/overlay/local/bin/f2py to 755 2025-12-03T09:19:36,272 changing mode of /tmp/pip-build-env-5l3kr_3m/overlay/local/bin/numpy-config to 755 2025-12-03T09:19:39,345 changing mode of /tmp/pip-build-env-5l3kr_3m/overlay/local/bin/cygdb to 755 2025-12-03T09:19:39,347 changing mode of /tmp/pip-build-env-5l3kr_3m/overlay/local/bin/cython to 755 2025-12-03T09:19:39,349 changing mode of /tmp/pip-build-env-5l3kr_3m/overlay/local/bin/cythonize to 755 2025-12-03T09:19:39,630 changing mode of /tmp/pip-build-env-5l3kr_3m/overlay/local/bin/setuptools-scm to 755 2025-12-03T09:19:39,680 Successfully installed Cython-3.2.2 numpy-2.3.5 packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 wheel-0.45.1 2025-12-03T09:19:40,144 Installing build dependencies: finished with status 'done' 2025-12-03T09:19:40,152 Getting requirements to build wheel: started 2025-12-03T09:19:40,153 Running command Getting requirements to build wheel 2025-12-03T09:20:21,006 Compiling xicommon/cython/fast_unique.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,006 Compiling xicommon/cython/isin_set.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/utility.pxd. 2025-12-03T09:20:21,007 Compiling xicommon/cython/unique_byte_ranges.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,008 Compiling xicommon/cython/argsort_byte_ranges.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,008 Compiling xicommon/cython/fragmentation.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,009 Compiling xicommon/cython/compare_byte_ranges.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,010 Compiling xicommon/cython/db_uuid.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/time.pxd. 2025-12-03T09:20:21,010 Compiling xicommon/cython/inplace_reorder.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,011 Compiling xicommon/cython/fast_lookup.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,011 Compiling xicommon/cython/copy_byte_ranges.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,012 Compiling xicommon/cython/fast_candidate_scores.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,012 Compiling xicommon/cython/num_lexico_permutation.pyx because it depends on /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T09:20:21,013 [ 1/12] Cythonizing xicommon/cython/argsort_byte_ranges.pyx 2025-12-03T09:20:21,014 [ 2/12] Cythonizing xicommon/cython/compare_byte_ranges.pyx 2025-12-03T09:20:21,014 [ 3/12] Cythonizing xicommon/cython/copy_byte_ranges.pyx 2025-12-03T09:20:21,015 [ 4/12] Cythonizing xicommon/cython/db_uuid.pyx 2025-12-03T09:20:21,016 [ 5/12] Cythonizing xicommon/cython/fast_unique.pyx 2025-12-03T09:20:21,016 [ 6/12] Cythonizing xicommon/cython/fragmentation.pyx 2025-12-03T09:20:21,017 [ 7/12] Cythonizing xicommon/cython/inplace_reorder.pyx 2025-12-03T09:20:21,017 [ 8/12] Cythonizing xicommon/cython/unique_byte_ranges.pyx 2025-12-03T09:20:21,018 [ 9/12] Cythonizing xicommon/cython/fast_candidate_scores.pyx 2025-12-03T09:20:21,018 [10/12] Cythonizing xicommon/cython/fast_lookup.pyx 2025-12-03T09:20:21,019 [11/12] Cythonizing xicommon/cython/isin_set.pyx 2025-12-03T09:20:21,019 [12/12] Cythonizing xicommon/cython/num_lexico_permutation.pyx 2025-12-03T09:20:21,137 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-03T09:20:21,178 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-jwc2_4ou/xicommon_3ee8dbd066854e1c9241545a6d8d3f69/README.md' cannot be found 2025-12-03T09:20:21,179 return '\n'.join( 2025-12-03T09:20:21,180 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-03T09:20:21,180 !! 2025-12-03T09:20:21,181 ******************************************************************************** 2025-12-03T09:20:21,182 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-03T09:20:21,183 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-03T09:20:21,183 or your builds will no longer be supported. 2025-12-03T09:20:21,185 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-03T09:20:21,185 ******************************************************************************** 2025-12-03T09:20:21,186 !! 2025-12-03T09:20:21,187 corresp(dist, value, root_dir) 2025-12-03T09:20:21,282 running egg_info 2025-12-03T09:20:21,291 writing xicommon.egg-info/PKG-INFO 2025-12-03T09:20:21,297 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-12-03T09:20:21,301 writing requirements to xicommon.egg-info/requires.txt 2025-12-03T09:20:21,303 writing top-level names to xicommon.egg-info/top_level.txt 2025-12-03T09:20:21,342 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,343 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,343 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,344 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,345 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,345 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,346 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,346 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,347 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,348 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,350 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,356 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,360 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,363 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,364 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,367 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,374 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,376 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,379 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,383 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,383 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,384 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,385 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,385 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,386 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,386 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,387 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,388 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,388 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,389 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,389 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,389 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,390 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,390 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,391 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,392 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,392 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,393 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,393 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,394 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,394 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,395 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,395 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,396 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,397 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,398 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,398 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,399 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,399 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,400 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,400 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,401 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,401 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,402 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,402 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:21,423 listing git files failed - pretending there aren't any 2025-12-03T09:20:21,431 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T09:20:21,453 adding license file 'COPYING' 2025-12-03T09:20:21,453 adding license file 'COPYING.LESSER' 2025-12-03T09:20:21,462 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T09:20:23,098 Getting requirements to build wheel: finished with status 'done' 2025-12-03T09:20:23,102 Created temporary directory: /tmp/pip-modern-metadata-wvm2hj_a 2025-12-03T09:20:23,104 Preparing metadata (pyproject.toml): started 2025-12-03T09:20:23,105 Running command Preparing metadata (pyproject.toml) 2025-12-03T09:20:25,034 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-03T09:20:25,073 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-jwc2_4ou/xicommon_3ee8dbd066854e1c9241545a6d8d3f69/README.md' cannot be found 2025-12-03T09:20:25,073 return '\n'.join( 2025-12-03T09:20:25,074 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-03T09:20:25,075 !! 2025-12-03T09:20:25,076 ******************************************************************************** 2025-12-03T09:20:25,077 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-03T09:20:25,078 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-03T09:20:25,079 or your builds will no longer be supported. 2025-12-03T09:20:25,080 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-03T09:20:25,080 ******************************************************************************** 2025-12-03T09:20:25,081 !! 2025-12-03T09:20:25,081 corresp(dist, value, root_dir) 2025-12-03T09:20:25,173 running dist_info 2025-12-03T09:20:25,189 creating /tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info 2025-12-03T09:20:25,190 writing /tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info/PKG-INFO 2025-12-03T09:20:25,197 writing dependency_links to /tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info/dependency_links.txt 2025-12-03T09:20:25,201 writing requirements to /tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info/requires.txt 2025-12-03T09:20:25,202 writing top-level names to /tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info/top_level.txt 2025-12-03T09:20:25,203 writing manifest file '/tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info/SOURCES.txt' 2025-12-03T09:20:25,235 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,236 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,236 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,237 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,237 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,238 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,239 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,240 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,240 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,241 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,241 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,242 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,242 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,243 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,244 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,244 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,245 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,245 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,246 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,246 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,247 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,247 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,248 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,249 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,249 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,250 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,251 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,251 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,252 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,252 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,253 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,253 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,254 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,254 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,255 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,255 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,256 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,256 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,257 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,258 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,258 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,259 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,260 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,260 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,261 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,261 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,262 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,263 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,263 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,264 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,265 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,265 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,266 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,266 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,267 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:25,277 listing git files failed - pretending there aren't any 2025-12-03T09:20:25,283 reading manifest file '/tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info/SOURCES.txt' 2025-12-03T09:20:25,285 adding license file 'COPYING' 2025-12-03T09:20:25,286 adding license file 'COPYING.LESSER' 2025-12-03T09:20:25,290 writing manifest file '/tmp/pip-modern-metadata-wvm2hj_a/xicommon.egg-info/SOURCES.txt' 2025-12-03T09:20:25,291 creating '/tmp/pip-modern-metadata-wvm2hj_a/xicommon-1.0.6.dist-info' 2025-12-03T09:20:25,509 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-03T09:20:25,513 Source in /tmp/pip-wheel-jwc2_4ou/xicommon_3ee8dbd066854e1c9241545a6d8d3f69 has version 1.0.6, which satisfies requirement xicommon==1.0.6 from https://files.pythonhosted.org/packages/20/1d/7283a59259afaf39a300912de235a0e43b31d2645cd177f7174c4d0104f0/xicommon-1.0.6.tar.gz 2025-12-03T09:20:25,515 Removed xicommon==1.0.6 from https://files.pythonhosted.org/packages/20/1d/7283a59259afaf39a300912de235a0e43b31d2645cd177f7174c4d0104f0/xicommon-1.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-1nbgsols' 2025-12-03T09:20:25,520 Created temporary directory: /tmp/pip-unpack-mzojbntf 2025-12-03T09:20:25,520 Building wheels for collected packages: xicommon 2025-12-03T09:20:25,525 Created temporary directory: /tmp/pip-wheel-mbs4h91o 2025-12-03T09:20:25,526 Destination directory: /tmp/pip-wheel-mbs4h91o 2025-12-03T09:20:25,528 Building wheel for xicommon (pyproject.toml): started 2025-12-03T09:20:25,529 Running command Building wheel for xicommon (pyproject.toml) 2025-12-03T09:20:27,330 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-03T09:20:27,369 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-jwc2_4ou/xicommon_3ee8dbd066854e1c9241545a6d8d3f69/README.md' cannot be found 2025-12-03T09:20:27,370 return '\n'.join( 2025-12-03T09:20:27,370 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-03T09:20:27,371 !! 2025-12-03T09:20:27,372 ******************************************************************************** 2025-12-03T09:20:27,373 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-03T09:20:27,375 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-03T09:20:27,375 or your builds will no longer be supported. 2025-12-03T09:20:27,376 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-03T09:20:27,376 ******************************************************************************** 2025-12-03T09:20:27,377 !! 2025-12-03T09:20:27,378 corresp(dist, value, root_dir) 2025-12-03T09:20:27,460 running bdist_wheel 2025-12-03T09:20:27,491 running build 2025-12-03T09:20:27,491 running build_py 2025-12-03T09:20:27,500 creating build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,502 copying xicommon/modifications.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,505 copying xicommon/fragmentation.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,508 copying xicommon/mass.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,511 copying xicommon/synthetic_spectra.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,513 copying xicommon/dtypes.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,516 copying xicommon/config.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,519 copying xicommon/const.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,521 copying xicommon/context_base.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,523 copying xicommon/mock_context.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,526 copying xicommon/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,528 copying xicommon/utils.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,530 copying xicommon/cache.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,532 copying xicommon/spectra_reader.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,535 copying xicommon/xi_logging.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,538 copying xicommon/output_format.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,540 copying xicommon/helper.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,542 copying xicommon/fragment_peptides.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,545 copying xicommon/simple_databases.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T09:20:27,547 running egg_info 2025-12-03T09:20:27,563 writing xicommon.egg-info/PKG-INFO 2025-12-03T09:20:27,569 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-12-03T09:20:27,572 writing requirements to xicommon.egg-info/requires.txt 2025-12-03T09:20:27,573 writing top-level names to xicommon.egg-info/top_level.txt 2025-12-03T09:20:27,586 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,586 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,587 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,588 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,588 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,589 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,589 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,590 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,590 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,591 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,591 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,591 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,592 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,592 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,593 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,594 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,594 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,595 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,595 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,596 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,597 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,597 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,598 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,598 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,599 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,600 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,600 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,601 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,601 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,602 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,602 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,603 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,603 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,604 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,604 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,605 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,606 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,606 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,607 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,608 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,608 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,609 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,610 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,610 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,611 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,611 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,612 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,612 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,613 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,613 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,614 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,614 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,615 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,615 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,616 dependency /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T09:20:27,627 listing git files failed - pretending there aren't any 2025-12-03T09:20:27,633 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T09:20:27,654 adding license file 'COPYING' 2025-12-03T09:20:27,655 adding license file 'COPYING.LESSER' 2025-12-03T09:20:27,662 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T09:20:27,667 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.cython' is absent from the `packages` configuration. 2025-12-03T09:20:27,668 !! 2025-12-03T09:20:27,669 ******************************************************************************** 2025-12-03T09:20:27,669 ############################ 2025-12-03T09:20:27,670 # Package would be ignored # 2025-12-03T09:20:27,671 ############################ 2025-12-03T09:20:27,671 Python recognizes 'xicommon.cython' as an importable package[^1], 2025-12-03T09:20:27,672 but it is absent from setuptools' `packages` configuration. 2025-12-03T09:20:27,673 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-03T09:20:27,674 package, please make sure that 'xicommon.cython' is explicitly added 2025-12-03T09:20:27,674 to the `packages` configuration field. 2025-12-03T09:20:27,675 Alternatively, you can also rely on setuptools' discovery methods 2025-12-03T09:20:27,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-03T09:20:27,676 instead of `find_packages(...)`/`find:`). 2025-12-03T09:20:27,677 You can read more about "package discovery" on setuptools documentation page: 2025-12-03T09:20:27,678 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-03T09:20:27,679 If you don't want 'xicommon.cython' to be distributed and are 2025-12-03T09:20:27,679 already explicitly excluding 'xicommon.cython' via 2025-12-03T09:20:27,680 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-03T09:20:27,680 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-03T09:20:27,681 combination with a more fine grained `package-data` configuration. 2025-12-03T09:20:27,682 You can read more about "package data files" on setuptools documentation page: 2025-12-03T09:20:27,682 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-03T09:20:27,689 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-03T09:20:27,694 even if it does not contain any `.py` files. 2025-12-03T09:20:27,696 On the other hand, currently there is no concept of package data 2025-12-03T09:20:27,697 directory, all directories are treated like packages. 2025-12-03T09:20:27,697 ******************************************************************************** 2025-12-03T09:20:27,698 !! 2025-12-03T09:20:27,699 check.warn(importable) 2025-12-03T09:20:27,699 /tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.filters' is absent from the `packages` configuration. 2025-12-03T09:20:27,700 !! 2025-12-03T09:20:27,701 ******************************************************************************** 2025-12-03T09:20:27,701 ############################ 2025-12-03T09:20:27,702 # Package would be ignored # 2025-12-03T09:20:27,703 ############################ 2025-12-03T09:20:27,708 Python recognizes 'xicommon.filters' as an importable package[^1], 2025-12-03T09:20:27,709 but it is absent from setuptools' `packages` configuration. 2025-12-03T09:20:27,711 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-03T09:20:27,713 package, please make sure that 'xicommon.filters' is explicitly added 2025-12-03T09:20:27,715 to the `packages` configuration field. 2025-12-03T09:20:27,722 Alternatively, you can also rely on setuptools' discovery methods 2025-12-03T09:20:27,723 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-03T09:20:27,724 instead of `find_packages(...)`/`find:`). 2025-12-03T09:20:27,725 You can read more about "package discovery" on setuptools documentation page: 2025-12-03T09:20:27,726 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-03T09:20:27,727 If you don't want 'xicommon.filters' to be distributed and are 2025-12-03T09:20:27,728 already explicitly excluding 'xicommon.filters' via 2025-12-03T09:20:27,728 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-03T09:20:27,729 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-03T09:20:27,729 combination with a more fine grained `package-data` configuration. 2025-12-03T09:20:27,730 You can read more about "package data files" on setuptools documentation page: 2025-12-03T09:20:27,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-03T09:20:27,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-03T09:20:27,733 even if it does not contain any `.py` files. 2025-12-03T09:20:27,734 On the other hand, currently there is no concept of package data 2025-12-03T09:20:27,734 directory, all directories are treated like packages. 2025-12-03T09:20:27,734 ******************************************************************************** 2025-12-03T09:20:27,735 !! 2025-12-03T09:20:27,736 check.warn(importable) 2025-12-03T09:20:27,736 creating build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,737 copying xicommon/cython/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,737 copying xicommon/cython/argsort_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,738 copying xicommon/cython/argsort_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,738 copying xicommon/cython/compare_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,739 copying xicommon/cython/compare_byte_ranges.pxd -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,739 copying xicommon/cython/compare_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,740 copying xicommon/cython/copy_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,766 copying xicommon/cython/copy_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,768 copying xicommon/cython/db_uuid.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,775 copying xicommon/cython/db_uuid.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,778 copying xicommon/cython/fast_candidate_scores.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,806 copying xicommon/cython/fast_candidate_scores.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,808 copying xicommon/cython/fast_lookup.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,871 copying xicommon/cython/fast_lookup.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,874 copying xicommon/cython/fast_unique.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,937 copying xicommon/cython/fast_unique.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,939 copying xicommon/cython/fragmentation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,989 copying xicommon/cython/fragmentation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,992 copying xicommon/cython/fragmentation.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:27,995 copying xicommon/cython/inplace_reorder.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,028 copying xicommon/cython/inplace_reorder.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,031 copying xicommon/cython/isin_set.cpp -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,104 copying xicommon/cython/isin_set.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,107 copying xicommon/cython/isin_set.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,109 copying xicommon/cython/num_lexico_permutation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,157 copying xicommon/cython/num_lexico_permutation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,160 copying xicommon/cython/unique_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,201 copying xicommon/cython/unique_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,203 creating build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,204 copying xicommon/filters/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,206 copying xicommon/filters/base_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,208 copying xicommon/filters/charge_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,211 copying xicommon/filters/denoise_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,213 copying xicommon/filters/isotope_detector.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,216 copying xicommon/filters/isotope_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,218 copying xicommon/filters/loss_cluster_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T09:20:28,221 running build_ext 2025-12-03T09:20:28,228 building 'xicommon.cython.fast_unique' extension 2025-12-03T09:20:28,229 creating build/temp.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T09:20:28,230 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_unique.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o 2025-12-03T09:20:47,024 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:20:47,218 building 'xicommon.cython.isin_set' extension 2025-12-03T09:20:47,219 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/isin_set.cpp -o build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -std=c++11 2025-12-03T09:21:23,880 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:21:24,293 building 'xicommon.cython.unique_byte_ranges' extension 2025-12-03T09:21:24,293 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/unique_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o 2025-12-03T09:21:41,507 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:21:41,638 building 'xicommon.cython.argsort_byte_ranges' extension 2025-12-03T09:21:41,639 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/argsort_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o 2025-12-03T09:21:57,848 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:21:57,976 building 'xicommon.cython.fragmentation' extension 2025-12-03T09:21:57,976 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fragmentation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o 2025-12-03T09:22:21,576 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:22:21,715 building 'xicommon.cython.compare_byte_ranges' extension 2025-12-03T09:22:21,716 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/compare_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o 2025-12-03T09:22:38,620 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:22:38,750 building 'xicommon.cython.db_uuid' extension 2025-12-03T09:22:38,750 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/db_uuid.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o 2025-12-03T09:22:41,925 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:22:42,027 building 'xicommon.cython.inplace_reorder' extension 2025-12-03T09:22:42,027 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/inplace_reorder.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o 2025-12-03T09:22:59,188 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:22:59,323 building 'xicommon.cython.fast_lookup' extension 2025-12-03T09:22:59,324 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_lookup.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o 2025-12-03T09:23:17,577 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:23:17,733 building 'xicommon.cython.copy_byte_ranges' extension 2025-12-03T09:23:17,733 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/copy_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o 2025-12-03T09:23:33,957 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:23:34,084 building 'xicommon.cython.fast_candidate_scores' extension 2025-12-03T09:23:34,084 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_candidate_scores.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o 2025-12-03T09:23:50,687 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:23:50,817 building 'xicommon.cython.num_lexico_permutation' extension 2025-12-03T09:23:50,818 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-5l3kr_3m/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/num_lexico_permutation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o 2025-12-03T09:24:07,212 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so 2025-12-03T09:24:07,412 installing to build/bdist.linux-armv7l/wheel 2025-12-03T09:24:07,412 running install 2025-12-03T09:24:07,436 running install_lib 2025-12-03T09:24:07,446 creating build/bdist.linux-armv7l/wheel 2025-12-03T09:24:07,449 creating build/bdist.linux-armv7l/wheel/xicommon 2025-12-03T09:24:07,450 copying build/lib.linux-armv7l-cpython-311/xicommon/modifications.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,454 copying build/lib.linux-armv7l-cpython-311/xicommon/fragmentation.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,457 copying build/lib.linux-armv7l-cpython-311/xicommon/mass.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,460 copying build/lib.linux-armv7l-cpython-311/xicommon/synthetic_spectra.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,462 copying build/lib.linux-armv7l-cpython-311/xicommon/dtypes.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,465 copying build/lib.linux-armv7l-cpython-311/xicommon/config.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,469 copying build/lib.linux-armv7l-cpython-311/xicommon/const.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,471 copying build/lib.linux-armv7l-cpython-311/xicommon/context_base.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,473 copying build/lib.linux-armv7l-cpython-311/xicommon/mock_context.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,477 creating build/bdist.linux-armv7l/wheel/xicommon/filters 2025-12-03T09:24:07,478 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/base_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T09:24:07,481 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/charge_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T09:24:07,483 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/denoise_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T09:24:07,485 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T09:24:07,487 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T09:24:07,490 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/loss_cluster_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T09:24:07,492 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_detector.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T09:24:07,495 copying build/lib.linux-armv7l-cpython-311/xicommon/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,498 copying build/lib.linux-armv7l-cpython-311/xicommon/utils.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,500 copying build/lib.linux-armv7l-cpython-311/xicommon/cache.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,503 copying build/lib.linux-armv7l-cpython-311/xicommon/spectra_reader.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,506 copying build/lib.linux-armv7l-cpython-311/xicommon/xi_logging.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,509 copying build/lib.linux-armv7l-cpython-311/xicommon/output_format.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:07,512 creating build/bdist.linux-armv7l/wheel/xicommon/cython 2025-12-03T09:24:07,514 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,517 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,540 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,568 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpp -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,603 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,605 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,610 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,612 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,615 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,655 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,669 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pxd -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,671 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,674 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,681 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,683 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,697 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,699 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,701 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,726 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,728 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,731 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,733 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,746 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,761 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,778 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,800 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,802 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,804 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,823 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,848 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,868 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,902 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,904 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,931 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,945 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,968 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:07,987 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:08,002 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:08,021 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:08,035 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T09:24:08,037 copying build/lib.linux-armv7l-cpython-311/xicommon/helper.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:08,039 copying build/lib.linux-armv7l-cpython-311/xicommon/fragment_peptides.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:08,042 copying build/lib.linux-armv7l-cpython-311/xicommon/simple_databases.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T09:24:08,044 running install_egg_info 2025-12-03T09:24:08,052 Copying xicommon.egg-info to build/bdist.linux-armv7l/wheel/./xicommon-1.0.6-py3.11.egg-info 2025-12-03T09:24:08,062 running install_scripts 2025-12-03T09:24:08,110 creating build/bdist.linux-armv7l/wheel/xicommon-1.0.6.dist-info/WHEEL 2025-12-03T09:24:08,113 creating '/tmp/pip-wheel-mbs4h91o/.tmp-d8lh_6g8/xicommon-1.0.6-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-03T09:24:08,116 adding 'xicommon/__init__.py' 2025-12-03T09:24:08,117 adding 'xicommon/cache.py' 2025-12-03T09:24:08,123 adding 'xicommon/config.py' 2025-12-03T09:24:08,124 adding 'xicommon/const.py' 2025-12-03T09:24:08,126 adding 'xicommon/context_base.py' 2025-12-03T09:24:08,128 adding 'xicommon/dtypes.py' 2025-12-03T09:24:08,130 adding 'xicommon/fragment_peptides.py' 2025-12-03T09:24:08,133 adding 'xicommon/fragmentation.py' 2025-12-03T09:24:08,135 adding 'xicommon/helper.py' 2025-12-03T09:24:08,137 adding 'xicommon/mass.py' 2025-12-03T09:24:08,139 adding 'xicommon/mock_context.py' 2025-12-03T09:24:08,142 adding 'xicommon/modifications.py' 2025-12-03T09:24:08,143 adding 'xicommon/output_format.py' 2025-12-03T09:24:08,145 adding 'xicommon/simple_databases.py' 2025-12-03T09:24:08,149 adding 'xicommon/spectra_reader.py' 2025-12-03T09:24:08,151 adding 'xicommon/synthetic_spectra.py' 2025-12-03T09:24:08,153 adding 'xicommon/utils.py' 2025-12-03T09:24:08,155 adding 'xicommon/xi_logging.py' 2025-12-03T09:24:08,157 adding 'xicommon/cython/__init__.py' 2025-12-03T09:24:08,249 adding 'xicommon/cython/argsort_byte_ranges.c' 2025-12-03T09:24:08,438 adding 'xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:08,444 adding 'xicommon/cython/argsort_byte_ranges.pyx' 2025-12-03T09:24:08,537 adding 'xicommon/cython/compare_byte_ranges.c' 2025-12-03T09:24:08,732 adding 'xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:08,739 adding 'xicommon/cython/compare_byte_ranges.pxd' 2025-12-03T09:24:08,740 adding 'xicommon/cython/compare_byte_ranges.pyx' 2025-12-03T09:24:08,831 adding 'xicommon/cython/copy_byte_ranges.c' 2025-12-03T09:24:09,019 adding 'xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:09,025 adding 'xicommon/cython/copy_byte_ranges.pyx' 2025-12-03T09:24:09,054 adding 'xicommon/cython/db_uuid.c' 2025-12-03T09:24:09,094 adding 'xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:09,096 adding 'xicommon/cython/db_uuid.pyx' 2025-12-03T09:24:09,187 adding 'xicommon/cython/fast_candidate_scores.c' 2025-12-03T09:24:09,379 adding 'xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:09,385 adding 'xicommon/cython/fast_candidate_scores.pyx' 2025-12-03T09:24:09,481 adding 'xicommon/cython/fast_lookup.c' 2025-12-03T09:24:09,683 adding 'xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:09,689 adding 'xicommon/cython/fast_lookup.pyx' 2025-12-03T09:24:09,785 adding 'xicommon/cython/fast_unique.c' 2025-12-03T09:24:09,992 adding 'xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:09,999 adding 'xicommon/cython/fast_unique.pyx' 2025-12-03T09:24:10,108 adding 'xicommon/cython/fragmentation.c' 2025-12-03T09:24:10,363 adding 'xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:10,372 adding 'xicommon/cython/fragmentation.pyx' 2025-12-03T09:24:10,374 adding 'xicommon/cython/fragmentation.pyxbld' 2025-12-03T09:24:10,466 adding 'xicommon/cython/inplace_reorder.c' 2025-12-03T09:24:10,661 adding 'xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:10,668 adding 'xicommon/cython/inplace_reorder.pyx' 2025-12-03T09:24:10,777 adding 'xicommon/cython/isin_set.cpp' 2025-12-03T09:24:11,186 adding 'xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:11,203 adding 'xicommon/cython/isin_set.pyx' 2025-12-03T09:24:11,205 adding 'xicommon/cython/isin_set.pyxbld' 2025-12-03T09:24:11,296 adding 'xicommon/cython/num_lexico_permutation.c' 2025-12-03T09:24:11,485 adding 'xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:11,491 adding 'xicommon/cython/num_lexico_permutation.pyx' 2025-12-03T09:24:11,585 adding 'xicommon/cython/unique_byte_ranges.c' 2025-12-03T09:24:11,781 adding 'xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T09:24:11,788 adding 'xicommon/cython/unique_byte_ranges.pyx' 2025-12-03T09:24:11,790 adding 'xicommon/filters/__init__.py' 2025-12-03T09:24:11,791 adding 'xicommon/filters/base_filter.py' 2025-12-03T09:24:11,792 adding 'xicommon/filters/charge_reducer.py' 2025-12-03T09:24:11,794 adding 'xicommon/filters/denoise_filter.py' 2025-12-03T09:24:11,797 adding 'xicommon/filters/isotope_detector.py' 2025-12-03T09:24:11,798 adding 'xicommon/filters/isotope_reducer.py' 2025-12-03T09:24:11,800 adding 'xicommon/filters/loss_cluster_filter.py' 2025-12-03T09:24:11,807 adding 'xicommon-1.0.6.dist-info/licenses/COPYING' 2025-12-03T09:24:11,809 adding 'xicommon-1.0.6.dist-info/licenses/COPYING.LESSER' 2025-12-03T09:24:11,810 adding 'xicommon-1.0.6.dist-info/METADATA' 2025-12-03T09:24:11,811 adding 'xicommon-1.0.6.dist-info/WHEEL' 2025-12-03T09:24:11,812 adding 'xicommon-1.0.6.dist-info/top_level.txt' 2025-12-03T09:24:11,814 adding 'xicommon-1.0.6.dist-info/RECORD' 2025-12-03T09:24:11,884 removing build/bdist.linux-armv7l/wheel 2025-12-03T09:24:12,100 Building wheel for xicommon (pyproject.toml): finished with status 'done' 2025-12-03T09:24:12,245 Created wheel for xicommon: filename=xicommon-1.0.6-cp311-cp311-linux_armv7l.whl size=6635638 sha256=e56a6ac9cf2d81326457dc65d9c0b17dbd2627ee4fbdce9864187458d42874d5 2025-12-03T09:24:12,246 Stored in directory: /tmp/pip-ephem-wheel-cache-onp08snp/wheels/a1/9e/a3/6322cea6b59e322d5bdedb53dadc43207f02bf89d0227bc976 2025-12-03T09:24:12,262 Successfully built xicommon 2025-12-03T09:24:12,420 Removed build tracker: '/tmp/pip-build-tracker-1nbgsols'