2025-12-03T11:14:22,389 Created temporary directory: /tmp/pip-ephem-wheel-cache-sntj5tn2 2025-12-03T11:14:22,391 Created temporary directory: /tmp/pip-build-tracker-qulxt5nd 2025-12-03T11:14:22,392 Initialized build tracking at /tmp/pip-build-tracker-qulxt5nd 2025-12-03T11:14:22,392 Created build tracker: /tmp/pip-build-tracker-qulxt5nd 2025-12-03T11:14:22,393 Entered build tracker: /tmp/pip-build-tracker-qulxt5nd 2025-12-03T11:14:22,393 Created temporary directory: /tmp/pip-wheel-xlms4q5c 2025-12-03T11:14:22,397 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-03T11:14:22,399 Created temporary directory: /tmp/pip-ephem-wheel-cache-1dr5b1ss 2025-12-03T11:14:22,423 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-03T11:14:22,426 2 location(s) to search for versions of xicommon: 2025-12-03T11:14:22,426 * https://pypi.org/simple/xicommon/ 2025-12-03T11:14:22,426 * https://www.piwheels.org/simple/xicommon/ 2025-12-03T11:14:22,427 Fetching project page and analyzing links: https://pypi.org/simple/xicommon/ 2025-12-03T11:14:22,428 Getting page https://pypi.org/simple/xicommon/ 2025-12-03T11:14:22,429 Found index url https://pypi.org/simple 2025-12-03T11:14:22,644 Fetched page https://pypi.org/simple/xicommon/ as application/vnd.pypi.simple.v1+json 2025-12-03T11:14:22,654 Skipping link: No binaries permitted for xicommon: 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https://files.pythonhosted.org/packages/b5/73/dcd4a3a6edd00f309914aa57c07eaceb2d3128fa4f777251549f19053e04/xicommon-1.0.7-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,686 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c1/41/e3e993f2664be0239d13b4e13fe7e36a037615a2a890ee52662ead6aaf48/xicommon-1.0.7-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,686 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/6a/b3/07ebb551b3d13e22b17a6074c34a440dc9e4c790b35e8b37572f14fa0ebc/xicommon-1.0.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,687 Found link https://files.pythonhosted.org/packages/e1/83/3cd18d592a04ed3108f58e246fc0b222ffb7a6bdd716a065164819235bdc/xicommon-1.0.7.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.7 2025-12-03T11:14:22,688 Fetching project page and analyzing links: https://www.piwheels.org/simple/xicommon/ 2025-12-03T11:14:22,688 Getting page https://www.piwheels.org/simple/xicommon/ 2025-12-03T11:14:22,690 Found index url https://www.piwheels.org/simple 2025-12-03T11:14:22,877 Fetched page https://www.piwheels.org/simple/xicommon/ as text/html 2025-12-03T11:14:22,882 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e56a6ac9cf2d81326457dc65d9c0b17dbd2627ee4fbdce9864187458d42874d5 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,882 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e56a6ac9cf2d81326457dc65d9c0b17dbd2627ee4fbdce9864187458d42874d5 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,883 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp313-cp313-linux_armv6l.whl#sha256=264c8a827a60240e1531a961b60bedd7a78c7699e37b3d4deba4db6d4fe9d5e8 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,884 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp313-cp313-linux_armv7l.whl#sha256=264c8a827a60240e1531a961b60bedd7a78c7699e37b3d4deba4db6d4fe9d5e8 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,885 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp311-cp311-linux_armv6l.whl#sha256=abf452c977d9b9954118366e531164ab1eed5e1053b91ccc42929fc770e41c0c (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,886 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp311-cp311-linux_armv7l.whl#sha256=abf452c977d9b9954118366e531164ab1eed5e1053b91ccc42929fc770e41c0c (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,886 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp313-cp313-linux_armv6l.whl#sha256=90d7602df1d7aa33553c5b06e35870c304080e9f8a606a1892481613f775d031 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,887 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp313-cp313-linux_armv7l.whl#sha256=90d7602df1d7aa33553c5b06e35870c304080e9f8a606a1892481613f775d031 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,888 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp311-cp311-linux_armv6l.whl#sha256=761a5e877631f9c83264844fb826a70ba4c321b5e3162d82f6de9bd1b99b052e (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,889 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp311-cp311-linux_armv7l.whl#sha256=761a5e877631f9c83264844fb826a70ba4c321b5e3162d82f6de9bd1b99b052e (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,889 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp313-cp313-linux_armv6l.whl#sha256=6073e5fc6b8caea94b65ff757dd01271bd86ea18044eab364f9db54f077b3d8d (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,889 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp313-cp313-linux_armv7l.whl#sha256=6073e5fc6b8caea94b65ff757dd01271bd86ea18044eab364f9db54f077b3d8d (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-03T11:14:22,890 Skipping link: not a file: https://www.piwheels.org/simple/xicommon/ 2025-12-03T11:14:22,890 Skipping link: not a file: https://pypi.org/simple/xicommon/ 2025-12-03T11:14:22,911 Given no hashes to check 1 links for project 'xicommon': discarding no candidates 2025-12-03T11:14:22,931 Collecting xicommon==1.0.7 2025-12-03T11:14:22,934 Created temporary directory: /tmp/pip-unpack-d5tzwv9p 2025-12-03T11:14:23,149 Downloading xicommon-1.0.7.tar.gz (74.4 MB) 2025-12-03T11:14:39,405 Added xicommon==1.0.7 from https://files.pythonhosted.org/packages/e1/83/3cd18d592a04ed3108f58e246fc0b222ffb7a6bdd716a065164819235bdc/xicommon-1.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-qulxt5nd' 2025-12-03T11:14:39,414 Created temporary directory: /tmp/pip-build-env-dggtz4nl 2025-12-03T11:14:39,419 Installing build dependencies: started 2025-12-03T11:14:39,420 Running command pip subprocess to install build dependencies 2025-12-03T11:14:40,554 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-03T11:14:41,211 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-03T11:14:41,234 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-03T11:14:43,106 Collecting setuptools>=42 2025-12-03T11:14:43,191 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-03T11:14:43,468 Collecting wheel 2025-12-03T11:14:43,486 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-12-03T11:14:43,817 Collecting setuptools_scm 2025-12-03T11:14:43,834 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-12-03T11:14:45,877 Collecting Cython>=3.0.0 2025-12-03T11:14:45,921 Using cached cython-3.2.2-cp39-abi3-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (2.9 MB) 2025-12-03T11:14:47,048 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T11:14:47,055 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T11:14:47,063 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T11:14:47,070 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T11:14:47,077 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-03T11:14:47,724 Collecting numpy>=1.20 2025-12-03T11:14:48,167 Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.5-cp311-cp311-linux_armv7l.whl (6.1 MB) 2025-12-03T11:14:48,533 Collecting packaging>=20 2025-12-03T11:14:48,550 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-03T11:14:51,515 Installing collected packages: wheel, setuptools, packaging, numpy, Cython, setuptools_scm 2025-12-03T11:14:51,761 Creating /tmp/pip-build-env-dggtz4nl/overlay/local/bin 2025-12-03T11:14:51,763 changing mode of /tmp/pip-build-env-dggtz4nl/overlay/local/bin/wheel to 755 2025-12-03T11:15:04,232 changing mode of /tmp/pip-build-env-dggtz4nl/overlay/local/bin/f2py to 755 2025-12-03T11:15:04,234 changing mode of /tmp/pip-build-env-dggtz4nl/overlay/local/bin/numpy-config to 755 2025-12-03T11:15:07,366 changing mode of /tmp/pip-build-env-dggtz4nl/overlay/local/bin/cygdb to 755 2025-12-03T11:15:07,369 changing mode of /tmp/pip-build-env-dggtz4nl/overlay/local/bin/cython to 755 2025-12-03T11:15:07,371 changing mode of /tmp/pip-build-env-dggtz4nl/overlay/local/bin/cythonize to 755 2025-12-03T11:15:07,634 changing mode of /tmp/pip-build-env-dggtz4nl/overlay/local/bin/setuptools-scm to 755 2025-12-03T11:15:07,685 Successfully installed Cython-3.2.2 numpy-2.3.5 packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 wheel-0.45.1 2025-12-03T11:15:08,145 Installing build dependencies: finished with status 'done' 2025-12-03T11:15:08,152 Getting requirements to build wheel: started 2025-12-03T11:15:08,153 Running command Getting requirements to build wheel 2025-12-03T11:15:34,706 Compiling xicommon/cython/fragmentation.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T11:15:34,707 Compiling xicommon/cython/fast_unique.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T11:15:34,708 Compiling xicommon/cython/argsort_byte_ranges.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T11:15:34,708 Compiling xicommon/cython/compare_byte_ranges.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T11:15:34,709 Compiling xicommon/cython/fast_lookup.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T11:15:34,709 Compiling xicommon/cython/copy_byte_ranges.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T11:15:34,710 Compiling xicommon/cython/fast_candidate_scores.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-03T11:15:34,710 Compiling xicommon/cython/db_uuid.pyx because it depends on /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/time.pxd. 2025-12-03T11:15:34,711 [1/8] Cythonizing xicommon/cython/argsort_byte_ranges.pyx 2025-12-03T11:15:34,712 [2/8] Cythonizing xicommon/cython/compare_byte_ranges.pyx 2025-12-03T11:15:34,712 [3/8] Cythonizing xicommon/cython/copy_byte_ranges.pyx 2025-12-03T11:15:34,713 [4/8] Cythonizing xicommon/cython/db_uuid.pyx 2025-12-03T11:15:34,713 [5/8] Cythonizing xicommon/cython/fast_unique.pyx 2025-12-03T11:15:34,713 [6/8] Cythonizing xicommon/cython/fragmentation.pyx 2025-12-03T11:15:34,714 [7/8] Cythonizing xicommon/cython/fast_candidate_scores.pyx 2025-12-03T11:15:34,714 [8/8] Cythonizing xicommon/cython/fast_lookup.pyx 2025-12-03T11:15:34,836 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-03T11:15:34,876 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-xlms4q5c/xicommon_17450eab45794fc1ba94d71155122a73/README.md' cannot be found 2025-12-03T11:15:34,876 return '\n'.join( 2025-12-03T11:15:34,877 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-03T11:15:34,878 !! 2025-12-03T11:15:34,879 ******************************************************************************** 2025-12-03T11:15:34,880 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-03T11:15:34,881 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-03T11:15:34,881 or your builds will no longer be supported. 2025-12-03T11:15:34,882 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-03T11:15:34,883 ******************************************************************************** 2025-12-03T11:15:34,884 !! 2025-12-03T11:15:34,885 corresp(dist, value, root_dir) 2025-12-03T11:15:34,983 running egg_info 2025-12-03T11:15:34,992 writing xicommon.egg-info/PKG-INFO 2025-12-03T11:15:34,999 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-12-03T11:15:35,003 writing requirements to xicommon.egg-info/requires.txt 2025-12-03T11:15:35,004 writing top-level names to xicommon.egg-info/top_level.txt 2025-12-03T11:15:35,040 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,041 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,042 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,042 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,043 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,043 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,044 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,044 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,045 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,046 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,046 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,047 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,047 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,048 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,052 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,055 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,057 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,059 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,060 dependency 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won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,084 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,085 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,085 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,086 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,087 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:35,119 listing git files failed - pretending there aren't any 2025-12-03T11:15:35,126 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T11:15:35,168 adding license file 'COPYING' 2025-12-03T11:15:35,169 adding license file 'COPYING.LESSER' 2025-12-03T11:15:35,176 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T11:15:36,238 Getting requirements to build wheel: finished with status 'done' 2025-12-03T11:15:36,242 Created temporary directory: /tmp/pip-modern-metadata-_q6w3xdc 2025-12-03T11:15:36,244 Preparing metadata (pyproject.toml): started 2025-12-03T11:15:36,245 Running command Preparing metadata (pyproject.toml) 2025-12-03T11:15:38,101 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-03T11:15:38,139 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-xlms4q5c/xicommon_17450eab45794fc1ba94d71155122a73/README.md' cannot be found 2025-12-03T11:15:38,140 return '\n'.join( 2025-12-03T11:15:38,141 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-03T11:15:38,142 !! 2025-12-03T11:15:38,143 ******************************************************************************** 2025-12-03T11:15:38,143 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-03T11:15:38,145 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-03T11:15:38,145 or your builds will no longer be supported. 2025-12-03T11:15:38,146 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-03T11:15:38,147 ******************************************************************************** 2025-12-03T11:15:38,147 !! 2025-12-03T11:15:38,148 corresp(dist, value, root_dir) 2025-12-03T11:15:38,241 running dist_info 2025-12-03T11:15:38,258 creating /tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info 2025-12-03T11:15:38,259 writing /tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info/PKG-INFO 2025-12-03T11:15:38,265 writing dependency_links to /tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info/dependency_links.txt 2025-12-03T11:15:38,269 writing requirements to /tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info/requires.txt 2025-12-03T11:15:38,270 writing top-level names to /tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info/top_level.txt 2025-12-03T11:15:38,272 writing manifest file '/tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info/SOURCES.txt' 2025-12-03T11:15:38,304 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,304 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,305 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,305 dependency 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/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,326 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,327 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,327 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,328 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,328 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,329 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,329 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,330 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,331 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,331 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,332 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,333 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,333 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,334 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,334 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:38,351 listing git files failed - pretending there aren't any 2025-12-03T11:15:38,357 reading manifest file '/tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info/SOURCES.txt' 2025-12-03T11:15:38,360 adding license file 'COPYING' 2025-12-03T11:15:38,360 adding license file 'COPYING.LESSER' 2025-12-03T11:15:38,364 writing manifest file '/tmp/pip-modern-metadata-_q6w3xdc/xicommon.egg-info/SOURCES.txt' 2025-12-03T11:15:38,366 creating '/tmp/pip-modern-metadata-_q6w3xdc/xicommon-1.0.7.dist-info' 2025-12-03T11:15:38,583 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-03T11:15:38,587 Source in /tmp/pip-wheel-xlms4q5c/xicommon_17450eab45794fc1ba94d71155122a73 has version 1.0.7, which satisfies requirement xicommon==1.0.7 from https://files.pythonhosted.org/packages/e1/83/3cd18d592a04ed3108f58e246fc0b222ffb7a6bdd716a065164819235bdc/xicommon-1.0.7.tar.gz 2025-12-03T11:15:38,588 Removed xicommon==1.0.7 from https://files.pythonhosted.org/packages/e1/83/3cd18d592a04ed3108f58e246fc0b222ffb7a6bdd716a065164819235bdc/xicommon-1.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-qulxt5nd' 2025-12-03T11:15:38,594 Created temporary directory: /tmp/pip-unpack-e6cfur4g 2025-12-03T11:15:38,594 Building wheels for collected packages: xicommon 2025-12-03T11:15:38,599 Created temporary directory: /tmp/pip-wheel-8ea86zvf 2025-12-03T11:15:38,600 Destination directory: /tmp/pip-wheel-8ea86zvf 2025-12-03T11:15:38,602 Building wheel for xicommon (pyproject.toml): started 2025-12-03T11:15:38,603 Running command Building wheel for xicommon (pyproject.toml) 2025-12-03T11:15:40,409 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-03T11:15:40,446 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-xlms4q5c/xicommon_17450eab45794fc1ba94d71155122a73/README.md' cannot be found 2025-12-03T11:15:40,447 return '\n'.join( 2025-12-03T11:15:40,448 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-03T11:15:40,449 !! 2025-12-03T11:15:40,450 ******************************************************************************** 2025-12-03T11:15:40,450 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-03T11:15:40,452 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-03T11:15:40,453 or your builds will no longer be supported. 2025-12-03T11:15:40,453 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-03T11:15:40,454 ******************************************************************************** 2025-12-03T11:15:40,455 !! 2025-12-03T11:15:40,455 corresp(dist, value, root_dir) 2025-12-03T11:15:40,534 running bdist_wheel 2025-12-03T11:15:40,565 running build 2025-12-03T11:15:40,566 running build_py 2025-12-03T11:15:40,575 creating build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,577 copying xicommon/synthetic_spectra.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,580 copying xicommon/fragment_peptides.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,583 copying xicommon/mock_context.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,585 copying xicommon/simple_databases.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,588 copying xicommon/const.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,590 copying xicommon/utils.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,592 copying xicommon/modifications.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,595 copying xicommon/output_format.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,597 copying xicommon/context_base.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,600 copying xicommon/mass.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,602 copying xicommon/fragmentation.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,605 copying xicommon/helper.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,607 copying xicommon/dtypes.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,609 copying xicommon/xi_logging.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,612 copying xicommon/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,614 copying xicommon/cache.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,616 copying xicommon/spectra_reader.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,619 copying xicommon/config.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-03T11:15:40,621 running egg_info 2025-12-03T11:15:40,638 writing xicommon.egg-info/PKG-INFO 2025-12-03T11:15:40,644 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-12-03T11:15:40,648 writing requirements to xicommon.egg-info/requires.txt 2025-12-03T11:15:40,649 writing top-level names to xicommon.egg-info/top_level.txt 2025-12-03T11:15:40,659 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,659 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,660 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,660 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,661 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,661 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,662 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,663 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,663 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,663 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,664 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,664 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,665 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,665 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,666 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,667 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,667 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,668 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,668 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,669 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,670 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,670 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,671 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,671 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,672 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,673 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,673 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,674 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,674 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,675 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,675 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,676 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,676 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,677 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,677 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,678 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,678 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,679 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,680 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,680 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,681 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,681 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,682 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,683 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,683 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,683 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,684 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,684 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,685 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,685 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,686 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,686 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,687 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,687 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,688 dependency /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-03T11:15:40,703 listing git files failed - pretending there aren't any 2025-12-03T11:15:40,709 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T11:15:40,719 adding license file 'COPYING' 2025-12-03T11:15:40,720 adding license file 'COPYING.LESSER' 2025-12-03T11:15:40,727 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-03T11:15:40,733 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.cython' is absent from the `packages` configuration. 2025-12-03T11:15:40,733 !! 2025-12-03T11:15:40,734 ******************************************************************************** 2025-12-03T11:15:40,735 ############################ 2025-12-03T11:15:40,736 # Package would be ignored # 2025-12-03T11:15:40,736 ############################ 2025-12-03T11:15:40,737 Python recognizes 'xicommon.cython' as an importable package[^1], 2025-12-03T11:15:40,737 but it is absent from setuptools' `packages` configuration. 2025-12-03T11:15:40,739 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-03T11:15:40,739 package, please make sure that 'xicommon.cython' is explicitly added 2025-12-03T11:15:40,740 to the `packages` configuration field. 2025-12-03T11:15:40,740 Alternatively, you can also rely on setuptools' discovery methods 2025-12-03T11:15:40,741 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-03T11:15:40,741 instead of `find_packages(...)`/`find:`). 2025-12-03T11:15:40,742 You can read more about "package discovery" on setuptools documentation page: 2025-12-03T11:15:40,743 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-03T11:15:40,744 If you don't want 'xicommon.cython' to be distributed and are 2025-12-03T11:15:40,744 already explicitly excluding 'xicommon.cython' via 2025-12-03T11:15:40,745 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-03T11:15:40,745 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-03T11:15:40,746 combination with a more fine grained `package-data` configuration. 2025-12-03T11:15:40,746 You can read more about "package data files" on setuptools documentation page: 2025-12-03T11:15:40,747 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-03T11:15:40,749 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-03T11:15:40,749 even if it does not contain any `.py` files. 2025-12-03T11:15:40,750 On the other hand, currently there is no concept of package data 2025-12-03T11:15:40,750 directory, all directories are treated like packages. 2025-12-03T11:15:40,751 ******************************************************************************** 2025-12-03T11:15:40,752 !! 2025-12-03T11:15:40,753 check.warn(importable) 2025-12-03T11:15:40,757 /tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.filters' is absent from the `packages` configuration. 2025-12-03T11:15:40,762 !! 2025-12-03T11:15:40,765 ******************************************************************************** 2025-12-03T11:15:40,771 ############################ 2025-12-03T11:15:40,777 # Package would be ignored # 2025-12-03T11:15:40,778 ############################ 2025-12-03T11:15:40,784 Python recognizes 'xicommon.filters' as an importable package[^1], 2025-12-03T11:15:40,790 but it is absent from setuptools' `packages` configuration. 2025-12-03T11:15:40,793 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-03T11:15:40,794 package, please make sure that 'xicommon.filters' is explicitly added 2025-12-03T11:15:40,795 to the `packages` configuration field. 2025-12-03T11:15:40,800 Alternatively, you can also rely on setuptools' discovery methods 2025-12-03T11:15:40,803 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-03T11:15:40,804 instead of `find_packages(...)`/`find:`). 2025-12-03T11:15:40,805 You can read more about "package discovery" on setuptools documentation page: 2025-12-03T11:15:40,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-03T11:15:40,808 If you don't want 'xicommon.filters' to be distributed and are 2025-12-03T11:15:40,811 already explicitly excluding 'xicommon.filters' via 2025-12-03T11:15:40,812 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-03T11:15:40,812 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-03T11:15:40,813 combination with a more fine grained `package-data` configuration. 2025-12-03T11:15:40,817 You can read more about "package data files" on setuptools documentation page: 2025-12-03T11:15:40,825 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-03T11:15:40,827 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-03T11:15:40,828 even if it does not contain any `.py` files. 2025-12-03T11:15:40,829 On the other hand, currently there is no concept of package data 2025-12-03T11:15:40,829 directory, all directories are treated like packages. 2025-12-03T11:15:40,830 ******************************************************************************** 2025-12-03T11:15:40,832 !! 2025-12-03T11:15:40,832 check.warn(importable) 2025-12-03T11:15:40,833 creating build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,834 copying xicommon/cython/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,835 copying xicommon/cython/argsort_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,836 copying xicommon/cython/argsort_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,837 copying xicommon/cython/compare_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,856 copying xicommon/cython/compare_byte_ranges.pxd -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,858 copying xicommon/cython/compare_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,860 copying xicommon/cython/copy_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,917 copying xicommon/cython/copy_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,920 copying xicommon/cython/db_uuid.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,931 copying xicommon/cython/db_uuid.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,934 copying xicommon/cython/fast_candidate_scores.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,981 copying xicommon/cython/fast_candidate_scores.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:40,983 copying xicommon/cython/fast_lookup.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,027 copying xicommon/cython/fast_lookup.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,029 copying xicommon/cython/fast_unique.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,085 copying xicommon/cython/fast_unique.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,088 copying xicommon/cython/fragmentation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,151 copying xicommon/cython/fragmentation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,155 copying xicommon/cython/fragmentation.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,157 copying xicommon/cython/inplace_reorder.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,194 copying xicommon/cython/inplace_reorder.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,197 copying xicommon/cython/isin_set.cpp -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,266 copying xicommon/cython/isin_set.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,269 copying xicommon/cython/isin_set.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,271 copying xicommon/cython/num_lexico_permutation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,327 copying xicommon/cython/num_lexico_permutation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,330 copying xicommon/cython/unique_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,376 copying xicommon/cython/unique_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,378 creating build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,379 copying xicommon/filters/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,382 copying xicommon/filters/base_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,384 copying xicommon/filters/charge_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,387 copying xicommon/filters/denoise_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,389 copying xicommon/filters/isotope_detector.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,392 copying xicommon/filters/isotope_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,395 copying xicommon/filters/loss_cluster_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-03T11:15:41,398 running build_ext 2025-12-03T11:15:41,405 building 'xicommon.cython.fragmentation' extension 2025-12-03T11:15:41,406 creating build/temp.linux-armv7l-cpython-311/xicommon/cython 2025-12-03T11:15:41,408 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fragmentation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o 2025-12-03T11:16:04,980 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:16:05,126 building 'xicommon.cython.fast_unique' extension 2025-12-03T11:16:05,127 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_unique.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o 2025-12-03T11:16:23,860 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:16:23,989 building 'xicommon.cython.argsort_byte_ranges' extension 2025-12-03T11:16:23,991 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/argsort_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o 2025-12-03T11:16:40,143 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:16:40,276 building 'xicommon.cython.compare_byte_ranges' extension 2025-12-03T11:16:40,276 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/compare_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o 2025-12-03T11:16:57,345 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:16:57,476 building 'xicommon.cython.fast_lookup' extension 2025-12-03T11:16:57,477 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_lookup.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o 2025-12-03T11:17:15,814 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:17:15,942 building 'xicommon.cython.copy_byte_ranges' extension 2025-12-03T11:17:15,943 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/copy_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o 2025-12-03T11:17:32,109 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:17:32,242 building 'xicommon.cython.num_lexico_permutation' extension 2025-12-03T11:17:32,243 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/num_lexico_permutation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o 2025-12-03T11:17:48,673 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:17:48,799 building 'xicommon.cython.fast_candidate_scores' extension 2025-12-03T11:17:48,800 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_candidate_scores.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o 2025-12-03T11:18:05,596 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:18:05,725 building 'xicommon.cython.inplace_reorder' extension 2025-12-03T11:18:05,726 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/inplace_reorder.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o 2025-12-03T11:18:22,808 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:18:22,941 building 'xicommon.cython.unique_byte_ranges' extension 2025-12-03T11:18:22,942 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/unique_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o 2025-12-03T11:18:40,205 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:18:40,341 building 'xicommon.cython.isin_set' extension 2025-12-03T11:18:40,341 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/isin_set.cpp -o build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -std=c++11 2025-12-03T11:19:17,102 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:19:17,449 building 'xicommon.cython.db_uuid' extension 2025-12-03T11:19:17,450 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-dggtz4nl/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/db_uuid.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o 2025-12-03T11:19:20,630 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so 2025-12-03T11:19:20,749 installing to build/bdist.linux-armv7l/wheel 2025-12-03T11:19:20,750 running install 2025-12-03T11:19:20,772 running install_lib 2025-12-03T11:19:20,781 creating build/bdist.linux-armv7l/wheel 2025-12-03T11:19:20,784 creating build/bdist.linux-armv7l/wheel/xicommon 2025-12-03T11:19:20,785 copying build/lib.linux-armv7l-cpython-311/xicommon/synthetic_spectra.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,788 copying build/lib.linux-armv7l-cpython-311/xicommon/fragment_peptides.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,790 copying build/lib.linux-armv7l-cpython-311/xicommon/mock_context.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,793 creating build/bdist.linux-armv7l/wheel/xicommon/filters 2025-12-03T11:19:20,795 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/base_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T11:19:20,797 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T11:19:20,799 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/charge_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T11:19:20,800 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/loss_cluster_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T11:19:20,802 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/denoise_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T11:19:20,804 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T11:19:20,806 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_detector.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-03T11:19:20,809 copying build/lib.linux-armv7l-cpython-311/xicommon/simple_databases.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,811 copying build/lib.linux-armv7l-cpython-311/xicommon/const.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,813 copying build/lib.linux-armv7l-cpython-311/xicommon/utils.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,815 copying build/lib.linux-armv7l-cpython-311/xicommon/modifications.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,818 copying build/lib.linux-armv7l-cpython-311/xicommon/output_format.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,820 copying build/lib.linux-armv7l-cpython-311/xicommon/context_base.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,822 copying build/lib.linux-armv7l-cpython-311/xicommon/mass.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,825 copying build/lib.linux-armv7l-cpython-311/xicommon/fragmentation.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,827 copying build/lib.linux-armv7l-cpython-311/xicommon/helper.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:20,831 creating build/bdist.linux-armv7l/wheel/xicommon/cython 2025-12-03T11:19:20,832 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,838 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,857 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,878 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,881 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,899 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,901 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,915 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,918 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,942 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,944 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,947 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,975 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,992 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:20,995 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,014 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,052 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,073 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,075 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,077 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,096 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,097 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpp -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,123 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,138 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,140 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,154 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,161 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,163 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,180 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,182 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,202 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,217 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,241 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,257 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,277 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,279 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,293 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,297 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pxd -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,299 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,302 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-03T11:19:21,338 copying build/lib.linux-armv7l-cpython-311/xicommon/dtypes.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:21,341 copying build/lib.linux-armv7l-cpython-311/xicommon/xi_logging.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:21,344 copying build/lib.linux-armv7l-cpython-311/xicommon/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:21,346 copying build/lib.linux-armv7l-cpython-311/xicommon/cache.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:21,348 copying build/lib.linux-armv7l-cpython-311/xicommon/spectra_reader.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:21,352 copying build/lib.linux-armv7l-cpython-311/xicommon/config.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-03T11:19:21,355 running install_egg_info 2025-12-03T11:19:21,366 Copying xicommon.egg-info to build/bdist.linux-armv7l/wheel/./xicommon-1.0.7-py3.11.egg-info 2025-12-03T11:19:21,380 running install_scripts 2025-12-03T11:19:21,448 creating build/bdist.linux-armv7l/wheel/xicommon-1.0.7.dist-info/WHEEL 2025-12-03T11:19:21,452 creating '/tmp/pip-wheel-8ea86zvf/.tmp-gxjqhent/xicommon-1.0.7-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-03T11:19:21,455 adding 'xicommon/__init__.py' 2025-12-03T11:19:21,457 adding 'xicommon/cache.py' 2025-12-03T11:19:21,465 adding 'xicommon/config.py' 2025-12-03T11:19:21,467 adding 'xicommon/const.py' 2025-12-03T11:19:21,469 adding 'xicommon/context_base.py' 2025-12-03T11:19:21,472 adding 'xicommon/dtypes.py' 2025-12-03T11:19:21,475 adding 'xicommon/fragment_peptides.py' 2025-12-03T11:19:21,480 adding 'xicommon/fragmentation.py' 2025-12-03T11:19:21,482 adding 'xicommon/helper.py' 2025-12-03T11:19:21,484 adding 'xicommon/mass.py' 2025-12-03T11:19:21,487 adding 'xicommon/mock_context.py' 2025-12-03T11:19:21,491 adding 'xicommon/modifications.py' 2025-12-03T11:19:21,493 adding 'xicommon/output_format.py' 2025-12-03T11:19:21,495 adding 'xicommon/simple_databases.py' 2025-12-03T11:19:21,499 adding 'xicommon/spectra_reader.py' 2025-12-03T11:19:21,501 adding 'xicommon/synthetic_spectra.py' 2025-12-03T11:19:21,503 adding 'xicommon/utils.py' 2025-12-03T11:19:21,504 adding 'xicommon/xi_logging.py' 2025-12-03T11:19:21,507 adding 'xicommon/cython/__init__.py' 2025-12-03T11:19:21,598 adding 'xicommon/cython/argsort_byte_ranges.c' 2025-12-03T11:19:21,786 adding 'xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:21,792 adding 'xicommon/cython/argsort_byte_ranges.pyx' 2025-12-03T11:19:21,885 adding 'xicommon/cython/compare_byte_ranges.c' 2025-12-03T11:19:22,079 adding 'xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:22,085 adding 'xicommon/cython/compare_byte_ranges.pxd' 2025-12-03T11:19:22,086 adding 'xicommon/cython/compare_byte_ranges.pyx' 2025-12-03T11:19:22,177 adding 'xicommon/cython/copy_byte_ranges.c' 2025-12-03T11:19:22,364 adding 'xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:22,370 adding 'xicommon/cython/copy_byte_ranges.pyx' 2025-12-03T11:19:22,399 adding 'xicommon/cython/db_uuid.c' 2025-12-03T11:19:22,438 adding 'xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:22,441 adding 'xicommon/cython/db_uuid.pyx' 2025-12-03T11:19:22,531 adding 'xicommon/cython/fast_candidate_scores.c' 2025-12-03T11:19:22,722 adding 'xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:22,728 adding 'xicommon/cython/fast_candidate_scores.pyx' 2025-12-03T11:19:22,824 adding 'xicommon/cython/fast_lookup.c' 2025-12-03T11:19:23,024 adding 'xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:23,031 adding 'xicommon/cython/fast_lookup.pyx' 2025-12-03T11:19:23,126 adding 'xicommon/cython/fast_unique.c' 2025-12-03T11:19:23,332 adding 'xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:23,339 adding 'xicommon/cython/fast_unique.pyx' 2025-12-03T11:19:23,447 adding 'xicommon/cython/fragmentation.c' 2025-12-03T11:19:23,701 adding 'xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:23,710 adding 'xicommon/cython/fragmentation.pyx' 2025-12-03T11:19:23,712 adding 'xicommon/cython/fragmentation.pyxbld' 2025-12-03T11:19:23,803 adding 'xicommon/cython/inplace_reorder.c' 2025-12-03T11:19:23,998 adding 'xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:24,004 adding 'xicommon/cython/inplace_reorder.pyx' 2025-12-03T11:19:24,112 adding 'xicommon/cython/isin_set.cpp' 2025-12-03T11:19:24,520 adding 'xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:24,537 adding 'xicommon/cython/isin_set.pyx' 2025-12-03T11:19:24,539 adding 'xicommon/cython/isin_set.pyxbld' 2025-12-03T11:19:24,630 adding 'xicommon/cython/num_lexico_permutation.c' 2025-12-03T11:19:24,817 adding 'xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:24,824 adding 'xicommon/cython/num_lexico_permutation.pyx' 2025-12-03T11:19:24,917 adding 'xicommon/cython/unique_byte_ranges.c' 2025-12-03T11:19:25,112 adding 'xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-03T11:19:25,119 adding 'xicommon/cython/unique_byte_ranges.pyx' 2025-12-03T11:19:25,120 adding 'xicommon/filters/__init__.py' 2025-12-03T11:19:25,122 adding 'xicommon/filters/base_filter.py' 2025-12-03T11:19:25,123 adding 'xicommon/filters/charge_reducer.py' 2025-12-03T11:19:25,125 adding 'xicommon/filters/denoise_filter.py' 2025-12-03T11:19:25,127 adding 'xicommon/filters/isotope_detector.py' 2025-12-03T11:19:25,129 adding 'xicommon/filters/isotope_reducer.py' 2025-12-03T11:19:25,130 adding 'xicommon/filters/loss_cluster_filter.py' 2025-12-03T11:19:25,138 adding 'xicommon-1.0.7.dist-info/licenses/COPYING' 2025-12-03T11:19:25,139 adding 'xicommon-1.0.7.dist-info/licenses/COPYING.LESSER' 2025-12-03T11:19:25,141 adding 'xicommon-1.0.7.dist-info/METADATA' 2025-12-03T11:19:25,142 adding 'xicommon-1.0.7.dist-info/WHEEL' 2025-12-03T11:19:25,143 adding 'xicommon-1.0.7.dist-info/top_level.txt' 2025-12-03T11:19:25,144 adding 'xicommon-1.0.7.dist-info/RECORD' 2025-12-03T11:19:25,215 removing build/bdist.linux-armv7l/wheel 2025-12-03T11:19:25,429 Building wheel for xicommon (pyproject.toml): finished with status 'done' 2025-12-03T11:19:25,563 Created wheel for xicommon: filename=xicommon-1.0.7-cp311-cp311-linux_armv7l.whl size=6635755 sha256=b308bae77eb4b0c0583eef069546942cec293c12902b2f96fcf3c1ac98c7f906 2025-12-03T11:19:25,565 Stored in directory: /tmp/pip-ephem-wheel-cache-1dr5b1ss/wheels/16/9c/ca/419570d3ae6533655d0139a9235a045a9f1a1452f28937068a 2025-12-03T11:19:25,581 Successfully built xicommon 2025-12-03T11:19:25,810 Removed build tracker: '/tmp/pip-build-tracker-qulxt5nd'