2025-12-05T02:27:29,066 Created temporary directory: /tmp/pip-ephem-wheel-cache-568ttqyh 2025-12-05T02:27:29,068 Created temporary directory: /tmp/pip-build-tracker-b4klvnxs 2025-12-05T02:27:29,068 Initialized build tracking at /tmp/pip-build-tracker-b4klvnxs 2025-12-05T02:27:29,069 Created build tracker: /tmp/pip-build-tracker-b4klvnxs 2025-12-05T02:27:29,069 Entered build tracker: /tmp/pip-build-tracker-b4klvnxs 2025-12-05T02:27:29,070 Created temporary directory: /tmp/pip-wheel-b8a3y52f 2025-12-05T02:27:29,073 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-05T02:27:29,075 Created temporary directory: /tmp/pip-ephem-wheel-cache-2on70mmz 2025-12-05T02:27:29,097 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-05T02:27:29,100 2 location(s) to search for versions of bioio: 2025-12-05T02:27:29,100 * https://pypi.org/simple/bioio/ 2025-12-05T02:27:29,100 * https://www.piwheels.org/simple/bioio/ 2025-12-05T02:27:29,101 Fetching project page and analyzing links: https://pypi.org/simple/bioio/ 2025-12-05T02:27:29,102 Getting page https://pypi.org/simple/bioio/ 2025-12-05T02:27:29,103 Found index url https://pypi.org/simple 2025-12-05T02:27:29,325 Fetched page https://pypi.org/simple/bioio/ as application/vnd.pypi.simple.v1+json 2025-12-05T02:27:29,333 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/ec/85/18a0360b412b68373b948dcfec4ca5cf06614323162dc1cf6e867582348a/bioio-0.0.1-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.8) 2025-12-05T02:27:29,334 Found link https://files.pythonhosted.org/packages/9f/68/d7d74b861ab32b5ffc9908221dfd88c02852a0d59623e97717259f2e867f/bioio-0.0.1.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.8), version: 0.0.1 2025-12-05T02:27:29,334 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/c0/45/cab49f617fbf376122ebf477da6f52efa1659b7cd9033d24e7d38bfb23fd/bioio-0.9.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,335 Found link https://files.pythonhosted.org/packages/66/3a/d1f8296ee261b409702573edc3cda30e5ff3ede1674bc26821b4177f06d5/bioio-0.9.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.9), version: 0.9.0 2025-12-05T02:27:29,336 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/3a/4b/3a6b28d03ad7bfcc21320d9f28fa24d85b0bc8b1e66436c4cc635fb4202f/bioio-1.0.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,337 Found link https://files.pythonhosted.org/packages/d1/76/7417282e0af772d5566c00b90be7dc5ccea146601d8407caaa72a3e2279d/bioio-1.0.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.9), version: 1.0.0 2025-12-05T02:27:29,338 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/34/72/d4a8b7b7a2ec8992d43c280a267955f7128ecea36fa4fdd8a7851e745d1d/bioio-1.0.1-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,339 Found link https://files.pythonhosted.org/packages/83/fe/6aadb2935706a4bdf20eaa440c682154ac9468ddccea009b4e71fda29d4a/bioio-1.0.1.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.9), version: 1.0.1 2025-12-05T02:27:29,339 Skipping link: No binaries 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link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/4d/81/5bcfc81747e47a34c91686a6945589cb5007c6513673f9f10470ca86d845/bioio-1.1.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,344 Found link https://files.pythonhosted.org/packages/e3/b9/60562a3e153ccdc662442430b84d782a53f00293dfba032d37585e5544b7/bioio-1.1.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.9), version: 1.1.0 2025-12-05T02:27:29,344 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/83/db/c35975cbab90c921f5490a4bb4bcdf037c319de3ebccfe031827746ffd48/bioio-1.2.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,345 Found link https://files.pythonhosted.org/packages/5f/d1/06c62f867899294da7fa0e36857338fa2f865dcbcaaf46517a2aa7ee54f8/bioio-1.2.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.9), version: 1.2.0 2025-12-05T02:27:29,345 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/58/fc/ec23738a400cac3b0ae0434fb18ce5942a3e35457129229b33fe26c5733c/bioio-1.2.1-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,346 Found link https://files.pythonhosted.org/packages/2b/45/cb162089363e58a259ffc0948542230004b0977224f844ba45d37e287040/bioio-1.2.1.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.9), version: 1.2.1 2025-12-05T02:27:29,347 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/6c/8c/e335c17ec4c0a4be321e0ed4dfc4cbab26424a1770aadeb73bb5c5b7cc42/bioio-1.3.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,348 Found link https://files.pythonhosted.org/packages/dc/f9/992cdf05b2dc858ae140f13099408e5d6038896ef09c0dcfab35361e18db/bioio-1.3.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 1.3.0 2025-12-05T02:27:29,349 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/90/13/3161a0d5ea9c8ddf6df932d024d0369e4754e7aaf6dfa49e03bcd83cdc13/bioio-1.4.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,350 Found link https://files.pythonhosted.org/packages/dc/a2/95be51b5110b72a8f9a38255220cc34d6dffbe1dc6865f42e963d01f5401/bioio-1.4.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 1.4.0 2025-12-05T02:27:29,351 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/e8/fe/88a5bc2ae926f15c8ea10e9964aeac11c9fce82760bc778fd6b1316ca8c1/bioio-1.5.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,351 Found link https://files.pythonhosted.org/packages/cb/75/53c354e6e0944cb4b979b8bb126b8594ca1e7b5ed2ec82f1fb60dde7f6df/bioio-1.5.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 1.5.0 2025-12-05T02:27:29,352 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/39/7f/a6d335a13f1b2bb67078a73678394fd495d48fc4a1a41d5e82c23f640f36/bioio-1.5.1-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,353 Found link https://files.pythonhosted.org/packages/46/af/7d9c51ae5ebe2d5e040e4729161ee1594c5f1eed31b388ae5ab9e24148e7/bioio-1.5.1.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 1.5.1 2025-12-05T02:27:29,354 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/2a/d1/8831b5fe9a4beb5c4af5dcf9a772660aa1f1e84596667708f634d290c62e/bioio-1.5.2-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,355 Found link https://files.pythonhosted.org/packages/2f/a5/6e16b381bcc347f73f937b654630d307204c603c3e59fbaab6fe7e6e1908/bioio-1.5.2.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 1.5.2 2025-12-05T02:27:29,355 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/08/d8/508ebee54f1c4a3a668dd88eff845bd3df59c94ba9aed512f1edf5844e79/bioio-1.6.1-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,356 Found link https://files.pythonhosted.org/packages/4d/38/da5d5716debcc06d94b6cde68bb25424d13c51bfb941ccc0b0446b0ecfc1/bioio-1.6.1.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 1.6.1 2025-12-05T02:27:29,357 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/5a/78/bf6653b7086fbbf957ac28fd1fb2b29396e82046f4ac8d8e7eb241abea80/bioio-2.0.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,357 Found link https://files.pythonhosted.org/packages/0a/17/a1b9dde99bd4c76cf00d1856c8f00c4e0b68b6ea8bfddd6a567e51f60df6/bioio-2.0.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 2.0.0 2025-12-05T02:27:29,358 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/a1/02/c6713b1d38fdf6b705265e8def466ed22f62c0684b8ee030809ad396924e/bioio-3.0.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,359 Found link https://files.pythonhosted.org/packages/f1/95/0f9c15d0e329da74d63ad8495ddb6563d53ee27bc4eea9dc471f59648015/bioio-3.0.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 3.0.0 2025-12-05T02:27:29,360 Skipping link: No binaries permitted for bioio: https://files.pythonhosted.org/packages/ce/2f/3d487c4147a3af1948a214e93d7c0dc3e05b6e2ccd47f6b1c212a11239df/bioio-3.1.0-py3-none-any.whl (from https://pypi.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,361 Found link https://files.pythonhosted.org/packages/e2/80/9e29c3cb436c5ef0131444b9696a6cd2f9cfb56be3521d28da6ecd2b1101/bioio-3.1.0.tar.gz (from https://pypi.org/simple/bioio/) (requires-python:>=3.10), version: 3.1.0 2025-12-05T02:27:29,362 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioio/ 2025-12-05T02:27:29,362 Getting page https://www.piwheels.org/simple/bioio/ 2025-12-05T02:27:29,364 Found index url https://www.piwheels.org/simple 2025-12-05T02:27:29,523 Fetched page https://www.piwheels.org/simple/bioio/ as text/html 2025-12-05T02:27:29,529 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-3.0.0-py3-none-any.whl#sha256=d9a6e568e2c34587aaa8a6cf555fcda9d4e5fcac9aec95f2bb03afaaebd43bdb (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,529 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-2.0.0-py3-none-any.whl#sha256=22a65b81b53dc97e8c4a0fcb6041127b167d4c0c9a7c47ef66a541d3096d5c37 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,530 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.6.1-py3-none-any.whl#sha256=d6ba9cd796ef1dcbcd74a240ee62d4c6d44b2023204753489a11b13e20a44236 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,531 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.5.2-py3-none-any.whl#sha256=ca835f2ad7e08f9b7ef38e91bb50c29cf1b2511ff5093eca2106614e329f2fe9 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,531 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.5.1-py3-none-any.whl#sha256=41241c711a653471b492b8a5477c93bf00e44fbda76b47ff046fc7597ade8117 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,532 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.5.0-py3-none-any.whl#sha256=1fedf087fac1e7232905fabb36bfa6e5d08bc765515fc521b6c8a4f66aaf8901 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,532 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.4.0-py3-none-any.whl#sha256=7ae2b415b7a8a1948cf9477f0db1ce41f38f80e14977f3bf140295ce874efdd5 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,533 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.3.0-py3-none-any.whl#sha256=9993ac5162cb68a0ce0e78fbf0108d677d934df1cb55adf11f7cc1c0e37718db (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.10) 2025-12-05T02:27:29,533 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.2.1-py3-none-any.whl#sha256=1b1e660face2a1cae38241ed388a112dfeb9c8d5c1557a1b473bd78fe710209b (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,534 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.2.0-py3-none-any.whl#sha256=14dfbfc3b8d18408b901cba376915b4af44aaafba436169eadca99cc4035afde (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,534 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.1.0-py3-none-any.whl#sha256=dde354c64ea6e1cab6b22301e33e134bf25c4244cbc2992baba35e655cbb6946 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,535 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.0.3-py3-none-any.whl#sha256=b004d0fb6519ef695203c5a634cc5bde53a90826e54ed0e84a43647c7ceeda84 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,535 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.0.2-py3-none-any.whl#sha256=f4a4cb08e669d2759a3a3174183cd01cfd34d0662f80555f564e2fe4857e3a8c (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,536 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.0.1-py3-none-any.whl#sha256=0f88dfd65e2dc8224f8281d276d8fbc22eb1c4c8fe919616ae344a8115b82ed5 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,536 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-1.0.0-py3-none-any.whl#sha256=9cdf1d2c7a7745467b3a12f1c228b95c113ea7ab75783f0b309128524f5538b4 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,537 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-0.9.0-py3-none-any.whl#sha256=8f364e12cc93bff8588ec4abc17b7fee8259db430268d68dc0826b340cd12467 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.9) 2025-12-05T02:27:29,538 Skipping link: No binaries permitted for bioio: https://archive1.piwheels.org/simple/bioio/bioio-0.0.1-py3-none-any.whl#sha256=4cf5623749a4c10aecaa4bc13a137106f7fc6e14af282a0f21ea0505ffe8cf85 (from https://www.piwheels.org/simple/bioio/) (requires-python:>=3.8) 2025-12-05T02:27:29,538 Skipping link: not a file: https://www.piwheels.org/simple/bioio/ 2025-12-05T02:27:29,539 Skipping link: not a file: https://pypi.org/simple/bioio/ 2025-12-05T02:27:29,560 Given no hashes to check 1 links for project 'bioio': discarding no candidates 2025-12-05T02:27:29,578 Collecting bioio==3.1.0 2025-12-05T02:27:29,581 Created temporary directory: /tmp/pip-unpack-rjta0rs8 2025-12-05T02:27:29,801 Downloading bioio-3.1.0.tar.gz (59 kB) 2025-12-05T02:27:29,957 Added bioio==3.1.0 from https://files.pythonhosted.org/packages/e2/80/9e29c3cb436c5ef0131444b9696a6cd2f9cfb56be3521d28da6ecd2b1101/bioio-3.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-b4klvnxs' 2025-12-05T02:27:29,966 Created temporary directory: /tmp/pip-build-env-9ii03jde 2025-12-05T02:27:29,970 Installing build dependencies: started 2025-12-05T02:27:29,971 Running command pip subprocess to install build dependencies 2025-12-05T02:27:31,109 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-05T02:27:31,738 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-05T02:27:31,761 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-05T02:27:33,523 Collecting setuptools>=65 2025-12-05T02:27:33,624 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-05T02:27:33,900 Collecting wheel 2025-12-05T02:27:33,917 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-12-05T02:27:34,249 Collecting setuptools_scm[toml]>=6.2 2025-12-05T02:27:34,267 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-12-05T02:27:34,463 Collecting packaging>=20 2025-12-05T02:27:34,479 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-05T02:27:37,403 Installing collected packages: wheel, setuptools, packaging, setuptools_scm 2025-12-05T02:27:37,654 Creating /tmp/pip-build-env-9ii03jde/overlay/local/bin 2025-12-05T02:27:37,657 changing mode of /tmp/pip-build-env-9ii03jde/overlay/local/bin/wheel to 755 2025-12-05T02:27:41,732 changing mode of /tmp/pip-build-env-9ii03jde/overlay/local/bin/setuptools-scm to 755 2025-12-05T02:27:41,762 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 wheel-0.45.1 2025-12-05T02:27:42,051 Installing build dependencies: finished with status 'done' 2025-12-05T02:27:42,057 Getting requirements to build wheel: started 2025-12-05T02:27:42,059 Running command Getting requirements to build wheel 2025-12-05T02:27:42,764 /tmp/pip-build-env-9ii03jde/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-05T02:27:42,764 !! 2025-12-05T02:27:42,765 ******************************************************************************** 2025-12-05T02:27:42,766 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-05T02:27:42,767 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-05T02:27:42,768 or your builds will no longer be supported. 2025-12-05T02:27:42,769 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-05T02:27:42,770 ******************************************************************************** 2025-12-05T02:27:42,772 !! 2025-12-05T02:27:42,772 corresp(dist, value, root_dir) 2025-12-05T02:27:42,869 running egg_info 2025-12-05T02:27:42,878 writing bioio.egg-info/PKG-INFO 2025-12-05T02:27:42,888 writing dependency_links to bioio.egg-info/dependency_links.txt 2025-12-05T02:27:42,894 writing requirements to bioio.egg-info/requires.txt 2025-12-05T02:27:42,896 writing top-level names to bioio.egg-info/top_level.txt 2025-12-05T02:27:42,956 listing git files failed - pretending there aren't any 2025-12-05T02:27:42,961 reading manifest file 'bioio.egg-info/SOURCES.txt' 2025-12-05T02:27:42,967 reading manifest template 'MANIFEST.in' 2025-12-05T02:27:42,978 warning: no previously-included files found matching '*/tests' 2025-12-05T02:27:42,979 adding license file 'LICENSE' 2025-12-05T02:27:42,983 writing manifest file 'bioio.egg-info/SOURCES.txt' 2025-12-05T02:27:43,085 Getting requirements to build wheel: finished with status 'done' 2025-12-05T02:27:43,088 Created temporary directory: /tmp/pip-modern-metadata-jpyqauh_ 2025-12-05T02:27:43,090 Preparing metadata (pyproject.toml): started 2025-12-05T02:27:43,091 Running command Preparing metadata (pyproject.toml) 2025-12-05T02:27:43,780 /tmp/pip-build-env-9ii03jde/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-05T02:27:43,780 !! 2025-12-05T02:27:43,781 ******************************************************************************** 2025-12-05T02:27:43,782 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-05T02:27:43,783 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-05T02:27:43,783 or your builds will no longer be supported. 2025-12-05T02:27:43,784 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-05T02:27:43,785 ******************************************************************************** 2025-12-05T02:27:43,786 !! 2025-12-05T02:27:43,786 corresp(dist, value, root_dir) 2025-12-05T02:27:43,878 running dist_info 2025-12-05T02:27:43,892 creating /tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info 2025-12-05T02:27:43,893 writing /tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info/PKG-INFO 2025-12-05T02:27:43,904 writing dependency_links to /tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info/dependency_links.txt 2025-12-05T02:27:43,910 writing requirements to /tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info/requires.txt 2025-12-05T02:27:43,911 writing top-level names to /tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info/top_level.txt 2025-12-05T02:27:43,912 writing manifest file '/tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info/SOURCES.txt' 2025-12-05T02:27:43,966 listing git files failed - pretending there aren't any 2025-12-05T02:27:43,970 reading manifest file '/tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info/SOURCES.txt' 2025-12-05T02:27:43,973 reading manifest template 'MANIFEST.in' 2025-12-05T02:27:43,984 warning: no previously-included files found matching '*/tests' 2025-12-05T02:27:43,985 adding license file 'LICENSE' 2025-12-05T02:27:43,987 writing manifest file '/tmp/pip-modern-metadata-jpyqauh_/bioio.egg-info/SOURCES.txt' 2025-12-05T02:27:43,988 creating '/tmp/pip-modern-metadata-jpyqauh_/bioio-3.1.0.dist-info' 2025-12-05T02:27:44,118 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-05T02:27:44,123 Source in /tmp/pip-wheel-b8a3y52f/bioio_87bf861156064432afb4f8eb4bd18840 has version 3.1.0, which satisfies requirement bioio==3.1.0 from https://files.pythonhosted.org/packages/e2/80/9e29c3cb436c5ef0131444b9696a6cd2f9cfb56be3521d28da6ecd2b1101/bioio-3.1.0.tar.gz 2025-12-05T02:27:44,124 Removed bioio==3.1.0 from https://files.pythonhosted.org/packages/e2/80/9e29c3cb436c5ef0131444b9696a6cd2f9cfb56be3521d28da6ecd2b1101/bioio-3.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-b4klvnxs' 2025-12-05T02:27:44,130 Created temporary directory: /tmp/pip-unpack-8te74dcz 2025-12-05T02:27:44,130 Building wheels for collected packages: bioio 2025-12-05T02:27:44,135 Created temporary directory: /tmp/pip-wheel-c4oa_ty7 2025-12-05T02:27:44,135 Destination directory: /tmp/pip-wheel-c4oa_ty7 2025-12-05T02:27:44,138 Building wheel for bioio (pyproject.toml): started 2025-12-05T02:27:44,139 Running command Building wheel for bioio (pyproject.toml) 2025-12-05T02:27:44,782 /tmp/pip-build-env-9ii03jde/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-05T02:27:44,782 !! 2025-12-05T02:27:44,783 ******************************************************************************** 2025-12-05T02:27:44,784 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-05T02:27:44,785 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-05T02:27:44,785 or your builds will no longer be supported. 2025-12-05T02:27:44,786 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-05T02:27:44,786 ******************************************************************************** 2025-12-05T02:27:44,787 !! 2025-12-05T02:27:44,788 corresp(dist, value, root_dir) 2025-12-05T02:27:44,867 running bdist_wheel 2025-12-05T02:27:44,892 running build 2025-12-05T02:27:44,893 running build_py 2025-12-05T02:27:44,900 creating build/lib/docs 2025-12-05T02:27:44,902 copying docs/conf.py -> build/lib/docs 2025-12-05T02:27:44,905 creating build/lib/bioio 2025-12-05T02:27:44,906 copying bioio/ome_utils.py -> build/lib/bioio 2025-12-05T02:27:44,908 copying bioio/bio_image.py -> build/lib/bioio 2025-12-05T02:27:44,911 copying bioio/__init__.py -> build/lib/bioio 2025-12-05T02:27:44,913 copying bioio/array_like_reader.py -> build/lib/bioio 2025-12-05T02:27:44,916 copying bioio/plugins.py -> build/lib/bioio 2025-12-05T02:27:44,919 creating build/lib/bioio/writers 2025-12-05T02:27:44,920 copying bioio/writers/__init__.py -> build/lib/bioio/writers 2025-12-05T02:27:44,922 creating build/lib/bioio/tests 2025-12-05T02:27:44,923 copying bioio/tests/test_plugins.py -> build/lib/bioio/tests 2025-12-05T02:27:44,925 copying bioio/tests/conftest.py -> build/lib/bioio/tests 2025-12-05T02:27:44,927 copying bioio/tests/__init__.py -> build/lib/bioio/tests 2025-12-05T02:27:44,929 copying bioio/tests/test_writer.py -> build/lib/bioio/tests 2025-12-05T02:27:44,931 copying bioio/tests/test_bio_image.py -> build/lib/bioio/tests 2025-12-05T02:27:44,933 copying bioio/tests/test_array_like_reader.py -> build/lib/bioio/tests 2025-12-05T02:27:44,937 creating build/lib/bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:44,939 copying bioio/tests/dummy-plugin/dummy_plugin/reader_metadata.py -> build/lib/bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:44,941 copying bioio/tests/dummy-plugin/dummy_plugin/writer.py -> build/lib/bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:44,943 copying bioio/tests/dummy-plugin/dummy_plugin/__init__.py -> build/lib/bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:44,945 copying bioio/tests/dummy-plugin/dummy_plugin/reader.py -> build/lib/bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:44,947 creating build/lib/bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:44,949 copying bioio/tests/accepting-plugin/accepting_plugin/reader_metadata.py -> build/lib/bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:44,951 copying bioio/tests/accepting-plugin/accepting_plugin/__init__.py -> build/lib/bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:44,953 copying bioio/tests/accepting-plugin/accepting_plugin/reader.py -> build/lib/bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:44,955 running egg_info 2025-12-05T02:27:44,969 writing bioio.egg-info/PKG-INFO 2025-12-05T02:27:44,978 writing dependency_links to bioio.egg-info/dependency_links.txt 2025-12-05T02:27:44,984 writing requirements to bioio.egg-info/requires.txt 2025-12-05T02:27:44,985 writing top-level names to bioio.egg-info/top_level.txt 2025-12-05T02:27:45,025 listing git files failed - pretending there aren't any 2025-12-05T02:27:45,029 reading manifest file 'bioio.egg-info/SOURCES.txt' 2025-12-05T02:27:45,033 reading manifest template 'MANIFEST.in' 2025-12-05T02:27:45,044 warning: no previously-included files found matching '*/tests' 2025-12-05T02:27:45,045 adding license file 'LICENSE' 2025-12-05T02:27:45,048 writing manifest file 'bioio.egg-info/SOURCES.txt' 2025-12-05T02:27:45,057 copying docs/CHANGELOG.rst -> build/lib/docs 2025-12-05T02:27:45,059 copying docs/CODE_OF_CONDUCT.md -> build/lib/docs 2025-12-05T02:27:45,061 copying docs/CONTRIBUTING.md -> build/lib/docs 2025-12-05T02:27:45,064 copying docs/GOVERNANCE.md -> build/lib/docs 2025-12-05T02:27:45,066 copying docs/MIGRATION.md -> build/lib/docs 2025-12-05T02:27:45,068 copying docs/MISSION_AND_VALUES.md -> build/lib/docs 2025-12-05T02:27:45,071 copying docs/OVERVIEW.md -> build/lib/docs 2025-12-05T02:27:45,074 copying docs/api_reference.rst -> build/lib/docs 2025-12-05T02:27:45,075 copying docs/contributing.rst -> build/lib/docs 2025-12-05T02:27:45,077 copying docs/developer_resources.rst -> build/lib/docs 2025-12-05T02:27:45,079 copying docs/index.rst -> build/lib/docs 2025-12-05T02:27:45,081 copying docs/installation.rst -> build/lib/docs 2025-12-05T02:27:45,083 copying bioio/py.typed -> build/lib/bioio 2025-12-05T02:27:45,085 copying bioio/tests/dummy-plugin/pyproject.toml -> build/lib/bioio/tests/dummy-plugin 2025-12-05T02:27:45,088 copying bioio/tests/accepting-plugin/pyproject.toml -> build/lib/bioio/tests/accepting-plugin 2025-12-05T02:27:45,106 installing to build/bdist.linux-armv7l/wheel 2025-12-05T02:27:45,107 running install 2025-12-05T02:27:45,130 running install_lib 2025-12-05T02:27:45,137 creating build/bdist.linux-armv7l/wheel 2025-12-05T02:27:45,139 creating build/bdist.linux-armv7l/wheel/docs 2025-12-05T02:27:45,140 copying build/lib/docs/contributing.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,142 copying build/lib/docs/developer_resources.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,144 copying build/lib/docs/GOVERNANCE.md -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,146 copying build/lib/docs/MISSION_AND_VALUES.md -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,149 copying build/lib/docs/index.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,151 copying build/lib/docs/CONTRIBUTING.md -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,153 copying build/lib/docs/api_reference.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,155 copying build/lib/docs/installation.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,156 copying build/lib/docs/MIGRATION.md -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,158 copying build/lib/docs/CHANGELOG.rst -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,160 copying build/lib/docs/OVERVIEW.md -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,162 copying build/lib/docs/CODE_OF_CONDUCT.md -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,164 copying build/lib/docs/conf.py -> build/bdist.linux-armv7l/wheel/./docs 2025-12-05T02:27:45,167 creating build/bdist.linux-armv7l/wheel/bioio 2025-12-05T02:27:45,168 creating build/bdist.linux-armv7l/wheel/bioio/writers 2025-12-05T02:27:45,169 copying build/lib/bioio/writers/__init__.py -> build/bdist.linux-armv7l/wheel/./bioio/writers 2025-12-05T02:27:45,172 copying build/lib/bioio/ome_utils.py -> build/bdist.linux-armv7l/wheel/./bioio 2025-12-05T02:27:45,173 copying build/lib/bioio/bio_image.py -> build/bdist.linux-armv7l/wheel/./bioio 2025-12-05T02:27:45,176 copying build/lib/bioio/__init__.py -> build/bdist.linux-armv7l/wheel/./bioio 2025-12-05T02:27:45,178 copying build/lib/bioio/py.typed -> build/bdist.linux-armv7l/wheel/./bioio 2025-12-05T02:27:45,180 copying build/lib/bioio/array_like_reader.py -> build/bdist.linux-armv7l/wheel/./bioio 2025-12-05T02:27:45,183 creating build/bdist.linux-armv7l/wheel/bioio/tests 2025-12-05T02:27:45,185 creating build/bdist.linux-armv7l/wheel/bioio/tests/dummy-plugin 2025-12-05T02:27:45,186 copying build/lib/bioio/tests/dummy-plugin/pyproject.toml -> build/bdist.linux-armv7l/wheel/./bioio/tests/dummy-plugin 2025-12-05T02:27:45,188 creating build/bdist.linux-armv7l/wheel/bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:45,190 copying build/lib/bioio/tests/dummy-plugin/dummy_plugin/reader_metadata.py -> build/bdist.linux-armv7l/wheel/./bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:45,191 copying build/lib/bioio/tests/dummy-plugin/dummy_plugin/writer.py -> build/bdist.linux-armv7l/wheel/./bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:45,193 copying build/lib/bioio/tests/dummy-plugin/dummy_plugin/__init__.py -> build/bdist.linux-armv7l/wheel/./bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:45,195 copying build/lib/bioio/tests/dummy-plugin/dummy_plugin/reader.py -> build/bdist.linux-armv7l/wheel/./bioio/tests/dummy-plugin/dummy_plugin 2025-12-05T02:27:45,197 copying build/lib/bioio/tests/test_plugins.py -> build/bdist.linux-armv7l/wheel/./bioio/tests 2025-12-05T02:27:45,198 copying build/lib/bioio/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./bioio/tests 2025-12-05T02:27:45,200 copying build/lib/bioio/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./bioio/tests 2025-12-05T02:27:45,202 creating build/bdist.linux-armv7l/wheel/bioio/tests/accepting-plugin 2025-12-05T02:27:45,203 copying build/lib/bioio/tests/accepting-plugin/pyproject.toml -> build/bdist.linux-armv7l/wheel/./bioio/tests/accepting-plugin 2025-12-05T02:27:45,206 creating build/bdist.linux-armv7l/wheel/bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:45,207 copying build/lib/bioio/tests/accepting-plugin/accepting_plugin/reader_metadata.py -> build/bdist.linux-armv7l/wheel/./bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:45,209 copying build/lib/bioio/tests/accepting-plugin/accepting_plugin/__init__.py -> build/bdist.linux-armv7l/wheel/./bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:45,210 copying build/lib/bioio/tests/accepting-plugin/accepting_plugin/reader.py -> build/bdist.linux-armv7l/wheel/./bioio/tests/accepting-plugin/accepting_plugin 2025-12-05T02:27:45,212 copying build/lib/bioio/tests/test_writer.py -> build/bdist.linux-armv7l/wheel/./bioio/tests 2025-12-05T02:27:45,214 copying build/lib/bioio/tests/test_bio_image.py -> build/bdist.linux-armv7l/wheel/./bioio/tests 2025-12-05T02:27:45,216 copying build/lib/bioio/tests/test_array_like_reader.py -> build/bdist.linux-armv7l/wheel/./bioio/tests 2025-12-05T02:27:45,218 copying build/lib/bioio/plugins.py -> build/bdist.linux-armv7l/wheel/./bioio 2025-12-05T02:27:45,221 running install_egg_info 2025-12-05T02:27:45,227 Copying bioio.egg-info to build/bdist.linux-armv7l/wheel/./bioio-3.1.0-py3.11.egg-info 2025-12-05T02:27:45,240 running install_scripts 2025-12-05T02:27:45,250 creating build/bdist.linux-armv7l/wheel/bioio-3.1.0.dist-info/WHEEL 2025-12-05T02:27:45,253 creating '/tmp/pip-wheel-c4oa_ty7/.tmp-usirhn22/bioio-3.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-05T02:27:45,255 adding 'bioio/__init__.py' 2025-12-05T02:27:45,258 adding 'bioio/array_like_reader.py' 2025-12-05T02:27:45,263 adding 'bioio/bio_image.py' 2025-12-05T02:27:45,265 adding 'bioio/ome_utils.py' 2025-12-05T02:27:45,267 adding 'bioio/plugins.py' 2025-12-05T02:27:45,268 adding 'bioio/py.typed' 2025-12-05T02:27:45,270 adding 'bioio/tests/__init__.py' 2025-12-05T02:27:45,272 adding 'bioio/tests/conftest.py' 2025-12-05T02:27:45,274 adding 'bioio/tests/test_array_like_reader.py' 2025-12-05T02:27:45,276 adding 'bioio/tests/test_bio_image.py' 2025-12-05T02:27:45,277 adding 'bioio/tests/test_plugins.py' 2025-12-05T02:27:45,278 adding 'bioio/tests/test_writer.py' 2025-12-05T02:27:45,281 adding 'bioio/tests/accepting-plugin/pyproject.toml' 2025-12-05T02:27:45,282 adding 'bioio/tests/accepting-plugin/accepting_plugin/__init__.py' 2025-12-05T02:27:45,283 adding 'bioio/tests/accepting-plugin/accepting_plugin/reader.py' 2025-12-05T02:27:45,285 adding 'bioio/tests/accepting-plugin/accepting_plugin/reader_metadata.py' 2025-12-05T02:27:45,286 adding 'bioio/tests/dummy-plugin/pyproject.toml' 2025-12-05T02:27:45,288 adding 'bioio/tests/dummy-plugin/dummy_plugin/__init__.py' 2025-12-05T02:27:45,289 adding 'bioio/tests/dummy-plugin/dummy_plugin/reader.py' 2025-12-05T02:27:45,290 adding 'bioio/tests/dummy-plugin/dummy_plugin/reader_metadata.py' 2025-12-05T02:27:45,291 adding 'bioio/tests/dummy-plugin/dummy_plugin/writer.py' 2025-12-05T02:27:45,293 adding 'bioio/writers/__init__.py' 2025-12-05T02:27:45,295 adding 'bioio-3.1.0.dist-info/licenses/LICENSE' 2025-12-05T02:27:45,297 adding 'docs/CHANGELOG.rst' 2025-12-05T02:27:45,298 adding 'docs/CODE_OF_CONDUCT.md' 2025-12-05T02:27:45,300 adding 'docs/CONTRIBUTING.md' 2025-12-05T02:27:45,301 adding 'docs/GOVERNANCE.md' 2025-12-05T02:27:45,303 adding 'docs/MIGRATION.md' 2025-12-05T02:27:45,304 adding 'docs/MISSION_AND_VALUES.md' 2025-12-05T02:27:45,306 adding 'docs/OVERVIEW.md' 2025-12-05T02:27:45,308 adding 'docs/api_reference.rst' 2025-12-05T02:27:45,309 adding 'docs/conf.py' 2025-12-05T02:27:45,310 adding 'docs/contributing.rst' 2025-12-05T02:27:45,311 adding 'docs/developer_resources.rst' 2025-12-05T02:27:45,312 adding 'docs/index.rst' 2025-12-05T02:27:45,314 adding 'docs/installation.rst' 2025-12-05T02:27:45,315 adding 'bioio-3.1.0.dist-info/METADATA' 2025-12-05T02:27:45,316 adding 'bioio-3.1.0.dist-info/WHEEL' 2025-12-05T02:27:45,317 adding 'bioio-3.1.0.dist-info/top_level.txt' 2025-12-05T02:27:45,318 adding 'bioio-3.1.0.dist-info/RECORD' 2025-12-05T02:27:45,320 removing build/bdist.linux-armv7l/wheel 2025-12-05T02:27:45,436 Building wheel for bioio (pyproject.toml): finished with status 'done' 2025-12-05T02:27:45,442 Created wheel for bioio: filename=bioio-3.1.0-py3-none-any.whl size=56741 sha256=5e959142a948d55a1799b0fabe8ce099af6d16dee1352454cbd45ad4febdca7d 2025-12-05T02:27:45,443 Stored in directory: /tmp/pip-ephem-wheel-cache-2on70mmz/wheels/fd/0b/ae/86fc4618a9646d89d50ae77d62c117fb79cda99089861bd3a2 2025-12-05T02:27:45,456 Successfully built bioio 2025-12-05T02:27:45,460 Removed build tracker: '/tmp/pip-build-tracker-b4klvnxs'