2025-12-05T18:50:24,454 Created temporary directory: /tmp/pip-ephem-wheel-cache-gv0q2uvc 2025-12-05T18:50:24,456 Created temporary directory: /tmp/pip-build-tracker-pnjm5qnz 2025-12-05T18:50:24,457 Initialized build tracking at /tmp/pip-build-tracker-pnjm5qnz 2025-12-05T18:50:24,458 Created build tracker: /tmp/pip-build-tracker-pnjm5qnz 2025-12-05T18:50:24,458 Entered build tracker: /tmp/pip-build-tracker-pnjm5qnz 2025-12-05T18:50:24,459 Created temporary directory: /tmp/pip-wheel-w20qsdb6 2025-12-05T18:50:24,462 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-05T18:50:24,464 Created temporary directory: /tmp/pip-ephem-wheel-cache-aoc7k_7m 2025-12-05T18:50:24,487 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-05T18:50:24,491 2 location(s) to search for versions of seqmat: 2025-12-05T18:50:24,491 * https://pypi.org/simple/seqmat/ 2025-12-05T18:50:24,491 * https://www.piwheels.org/simple/seqmat/ 2025-12-05T18:50:24,491 Fetching project page and analyzing links: https://pypi.org/simple/seqmat/ 2025-12-05T18:50:24,492 Getting page https://pypi.org/simple/seqmat/ 2025-12-05T18:50:24,494 Found index url https://pypi.org/simple 2025-12-05T18:50:24,714 Fetched page https://pypi.org/simple/seqmat/ as application/vnd.pypi.simple.v1+json 2025-12-05T18:50:24,729 Skipping link: No binaries permitted for seqmat: 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2025-12-05T18:50:24,748 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/7d/78/24bb0de5b5156807a5c53a57f58ffeb0d8650c8a49941cebf82f8f391434/seqmat-0.1.12-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-12-05T18:50:24,749 Found link https://files.pythonhosted.org/packages/97/36/6d5ae7021375224d55fb5c5bb9d00b0ec08e1d2a0ae02a7ce7c60255c76d/seqmat-0.1.12.tar.gz (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10), version: 0.1.12 2025-12-05T18:50:24,750 Skipping link: No binaries permitted for seqmat: https://files.pythonhosted.org/packages/50/8e/f6c0423aa6dd717823fb15b08002eb8227ef8a9b4da1e1d452d0e8eff2ac/seqmat-0.1.13-py3-none-any.whl (from https://pypi.org/simple/seqmat/) (requires-python:>=3.10) 2025-12-05T18:50:24,751 Found link https://files.pythonhosted.org/packages/c0/18/6aea9f02e6dc225e6a29802dc4623dc886b4a7ef20cca314e5fde45d75d5/seqmat-0.1.13.tar.gz (from https://pypi.org/simple/seqmat/) 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https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.7-py3-none-any.whl#sha256=e720e05af54a7a092cecbdf9e9e72b63a59cfcb01eded805d47aae52e7f063ca (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.10) 2025-12-05T18:50:24,991 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.6-py3-none-any.whl#sha256=70e48b986f9394f327d109e01cb6c1b942925a2f1b52a0ff693c5691d46118dd (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-12-05T18:50:24,992 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.5-py3-none-any.whl#sha256=e4c725f88a3261b2b46ec7b7b75572964a9efc8712c42c8567ec608f2c9a08a8 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-12-05T18:50:24,992 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.4-py3-none-any.whl#sha256=3ef0f2e02286de255d1731e64a08bc235c5085bf689f7918396b4a8982a14195 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-12-05T18:50:24,993 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.2-py3-none-any.whl#sha256=81d72023993394f9a800b27d16616149672b2ea3c504ac8400b47c96ffa5d7e2 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-12-05T18:50:24,993 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.1-py3-none-any.whl#sha256=fa42a4e0b266ac1e13c73a66c7885b3d1c3972eca867f81c739bc3583744f2d8 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-12-05T18:50:24,994 Skipping link: No binaries permitted for seqmat: https://archive1.piwheels.org/simple/seqmat/seqmat-0.1.0-py3-none-any.whl#sha256=4aac50f8ae8811ac5c12742f14fc069bb3f1181c8175af2941a4a8a1c96bb424 (from https://www.piwheels.org/simple/seqmat/) (requires-python:>=3.8) 2025-12-05T18:50:24,994 Skipping link: not a file: https://www.piwheels.org/simple/seqmat/ 2025-12-05T18:50:24,995 Skipping link: not a file: https://pypi.org/simple/seqmat/ 2025-12-05T18:50:25,018 Given no hashes to check 1 links for project 'seqmat': discarding no candidates 2025-12-05T18:50:25,036 Collecting seqmat==0.1.43 2025-12-05T18:50:25,039 Created temporary directory: /tmp/pip-unpack-vq12vrzk 2025-12-05T18:50:25,252 Downloading seqmat-0.1.43.tar.gz (48 kB) 2025-12-05T18:50:25,361 Added seqmat==0.1.43 from https://files.pythonhosted.org/packages/cd/3f/a265fc142f02d87fd4492640face25cfbe25be6d946eec4e3aff2a09e0d6/seqmat-0.1.43.tar.gz to build tracker '/tmp/pip-build-tracker-pnjm5qnz' 2025-12-05T18:50:25,363 Running setup.py (path:/tmp/pip-wheel-w20qsdb6/seqmat_7b9f353e3f3e4f408aa2bd479c041689/setup.py) egg_info for package seqmat 2025-12-05T18:50:25,363 Created temporary directory: /tmp/pip-pip-egg-info-82d80i7h 2025-12-05T18:50:25,364 Preparing metadata (setup.py): started 2025-12-05T18:50:25,365 Running command python setup.py egg_info 2025-12-05T18:50:26,254 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-05T18:50:26,254 !! 2025-12-05T18:50:26,256 ******************************************************************************** 2025-12-05T18:50:26,256 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-05T18:50:26,257 License :: OSI Approved :: MIT License 2025-12-05T18:50:26,259 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-05T18:50:26,259 ******************************************************************************** 2025-12-05T18:50:26,260 !! 2025-12-05T18:50:26,261 self._finalize_license_expression() 2025-12-05T18:50:26,285 running egg_info 2025-12-05T18:50:26,313 creating /tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info 2025-12-05T18:50:26,314 writing /tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/PKG-INFO 2025-12-05T18:50:26,321 writing dependency_links to /tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/dependency_links.txt 2025-12-05T18:50:26,323 writing entry points to /tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/entry_points.txt 2025-12-05T18:50:26,326 writing requirements to /tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/requires.txt 2025-12-05T18:50:26,327 writing top-level names to /tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/top_level.txt 2025-12-05T18:50:26,329 writing manifest file '/tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/SOURCES.txt' 2025-12-05T18:50:26,419 reading manifest file '/tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/SOURCES.txt' 2025-12-05T18:50:26,421 reading manifest template 'MANIFEST.in' 2025-12-05T18:50:26,429 adding license file 'LICENSE' 2025-12-05T18:50:26,432 writing manifest file '/tmp/pip-pip-egg-info-82d80i7h/seqmat.egg-info/SOURCES.txt' 2025-12-05T18:50:26,542 Preparing metadata (setup.py): finished with status 'done' 2025-12-05T18:50:26,548 Source in /tmp/pip-wheel-w20qsdb6/seqmat_7b9f353e3f3e4f408aa2bd479c041689 has version 0.1.43, which satisfies requirement seqmat==0.1.43 from https://files.pythonhosted.org/packages/cd/3f/a265fc142f02d87fd4492640face25cfbe25be6d946eec4e3aff2a09e0d6/seqmat-0.1.43.tar.gz 2025-12-05T18:50:26,549 Removed seqmat==0.1.43 from https://files.pythonhosted.org/packages/cd/3f/a265fc142f02d87fd4492640face25cfbe25be6d946eec4e3aff2a09e0d6/seqmat-0.1.43.tar.gz from build tracker '/tmp/pip-build-tracker-pnjm5qnz' 2025-12-05T18:50:26,559 Created temporary directory: /tmp/pip-unpack-lotm3ui9 2025-12-05T18:50:26,559 Building wheels for collected packages: seqmat 2025-12-05T18:50:26,564 Created temporary directory: /tmp/pip-wheel-b054d427 2025-12-05T18:50:26,565 Building wheel for seqmat (setup.py): started 2025-12-05T18:50:26,566 Destination directory: /tmp/pip-wheel-b054d427 2025-12-05T18:50:26,567 Running command python setup.py bdist_wheel 2025-12-05T18:50:27,420 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-05T18:50:27,421 !! 2025-12-05T18:50:27,422 ******************************************************************************** 2025-12-05T18:50:27,422 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-05T18:50:27,423 License :: OSI Approved :: MIT License 2025-12-05T18:50:27,425 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-05T18:50:27,425 ******************************************************************************** 2025-12-05T18:50:27,426 !! 2025-12-05T18:50:27,427 self._finalize_license_expression() 2025-12-05T18:50:27,428 running bdist_wheel 2025-12-05T18:50:27,559 running build 2025-12-05T18:50:27,560 running build_py 2025-12-05T18:50:27,592 creating build/lib/seqmat 2025-12-05T18:50:27,594 copying seqmat/transcript.py -> build/lib/seqmat 2025-12-05T18:50:27,597 copying seqmat/cli.py -> build/lib/seqmat 2025-12-05T18:50:27,599 copying seqmat/config.py -> build/lib/seqmat 2025-12-05T18:50:27,602 copying seqmat/__init__.py -> build/lib/seqmat 2025-12-05T18:50:27,604 copying seqmat/seqmat.py -> build/lib/seqmat 2025-12-05T18:50:27,606 copying seqmat/gene.py -> build/lib/seqmat 2025-12-05T18:50:27,608 copying seqmat/utils.py -> build/lib/seqmat 2025-12-05T18:50:27,612 creating build/lib/tests 2025-12-05T18:50:27,613 copying tests/__init__.py -> build/lib/tests 2025-12-05T18:50:27,615 copying tests/test_gene.py -> build/lib/tests 2025-12-05T18:50:27,617 copying tests/test_seqmat.py -> build/lib/tests 2025-12-05T18:50:27,619 running egg_info 2025-12-05T18:50:27,647 writing seqmat.egg-info/PKG-INFO 2025-12-05T18:50:27,654 writing dependency_links to seqmat.egg-info/dependency_links.txt 2025-12-05T18:50:27,656 writing entry points to seqmat.egg-info/entry_points.txt 2025-12-05T18:50:27,659 writing requirements to seqmat.egg-info/requires.txt 2025-12-05T18:50:27,660 writing top-level names to seqmat.egg-info/top_level.txt 2025-12-05T18:50:27,693 reading manifest file 'seqmat.egg-info/SOURCES.txt' 2025-12-05T18:50:27,696 reading manifest template 'MANIFEST.in' 2025-12-05T18:50:27,703 adding license file 'LICENSE' 2025-12-05T18:50:27,706 writing manifest file 'seqmat.egg-info/SOURCES.txt' 2025-12-05T18:50:27,738 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-12-05T18:50:27,738 !! 2025-12-05T18:50:27,739 ******************************************************************************** 2025-12-05T18:50:27,740 Please avoid running ``setup.py`` directly. 2025-12-05T18:50:27,740 Instead, use pypa/build, pypa/installer or other 2025-12-05T18:50:27,741 standards-based tools. 2025-12-05T18:50:27,742 This deprecation is overdue, please update your project and remove deprecated 2025-12-05T18:50:27,742 calls to avoid build errors in the future. 2025-12-05T18:50:27,743 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-12-05T18:50:27,744 ******************************************************************************** 2025-12-05T18:50:27,745 !! 2025-12-05T18:50:27,745 self.initialize_options() 2025-12-05T18:50:27,768 installing to build/bdist.linux-armv7l/wheel 2025-12-05T18:50:27,769 running install 2025-12-05T18:50:27,792 running install_lib 2025-12-05T18:50:27,820 creating build/bdist.linux-armv7l/wheel 2025-12-05T18:50:27,823 creating build/bdist.linux-armv7l/wheel/seqmat 2025-12-05T18:50:27,824 copying build/lib/seqmat/transcript.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-12-05T18:50:27,827 copying build/lib/seqmat/cli.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-12-05T18:50:27,829 copying build/lib/seqmat/config.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-12-05T18:50:27,832 copying build/lib/seqmat/__init__.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-12-05T18:50:27,834 copying build/lib/seqmat/seqmat.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-12-05T18:50:27,837 copying build/lib/seqmat/gene.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-12-05T18:50:27,839 copying build/lib/seqmat/utils.py -> build/bdist.linux-armv7l/wheel/./seqmat 2025-12-05T18:50:27,843 creating build/bdist.linux-armv7l/wheel/tests 2025-12-05T18:50:27,844 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-12-05T18:50:27,846 copying build/lib/tests/test_gene.py -> build/bdist.linux-armv7l/wheel/./tests 2025-12-05T18:50:27,848 copying build/lib/tests/test_seqmat.py -> build/bdist.linux-armv7l/wheel/./tests 2025-12-05T18:50:27,850 running install_egg_info 2025-12-05T18:50:27,889 Copying seqmat.egg-info to build/bdist.linux-armv7l/wheel/./seqmat-0.1.43-py3.11.egg-info 2025-12-05T18:50:27,902 running install_scripts 2025-12-05T18:50:27,918 creating build/bdist.linux-armv7l/wheel/seqmat-0.1.43.dist-info/WHEEL 2025-12-05T18:50:27,920 creating '/tmp/pip-wheel-b054d427/seqmat-0.1.43-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-05T18:50:27,922 adding 'seqmat/__init__.py' 2025-12-05T18:50:27,924 adding 'seqmat/cli.py' 2025-12-05T18:50:27,926 adding 'seqmat/config.py' 2025-12-05T18:50:27,928 adding 'seqmat/gene.py' 2025-12-05T18:50:27,932 adding 'seqmat/seqmat.py' 2025-12-05T18:50:27,934 adding 'seqmat/transcript.py' 2025-12-05T18:50:27,940 adding 'seqmat/utils.py' 2025-12-05T18:50:27,943 adding 'seqmat-0.1.43.dist-info/licenses/LICENSE' 2025-12-05T18:50:27,945 adding 'tests/__init__.py' 2025-12-05T18:50:27,946 adding 'tests/test_gene.py' 2025-12-05T18:50:27,948 adding 'tests/test_seqmat.py' 2025-12-05T18:50:27,951 adding 'seqmat-0.1.43.dist-info/METADATA' 2025-12-05T18:50:27,952 adding 'seqmat-0.1.43.dist-info/WHEEL' 2025-12-05T18:50:27,953 adding 'seqmat-0.1.43.dist-info/entry_points.txt' 2025-12-05T18:50:27,954 adding 'seqmat-0.1.43.dist-info/top_level.txt' 2025-12-05T18:50:27,955 adding 'seqmat-0.1.43.dist-info/RECORD' 2025-12-05T18:50:27,956 removing build/bdist.linux-armv7l/wheel 2025-12-05T18:50:28,075 Building wheel for seqmat (setup.py): finished with status 'done' 2025-12-05T18:50:28,078 Created wheel for seqmat: filename=seqmat-0.1.43-py3-none-any.whl size=41502 sha256=954606094e251641948eacef6719483ae6dce58e13379e9cf4aae6ac42290082 2025-12-05T18:50:28,079 Stored in directory: /tmp/pip-ephem-wheel-cache-aoc7k_7m/wheels/b7/42/c8/f8b49db67347792cf6c563bb9fa2fd89d69c1044186bde2eb5 2025-12-05T18:50:28,095 Successfully built seqmat 2025-12-05T18:50:28,099 Removed build tracker: '/tmp/pip-build-tracker-pnjm5qnz'