2025-12-06T06:31:39,428 Created temporary directory: /tmp/pip-ephem-wheel-cache-mexumqo7
2025-12-06T06:31:39,430 Created temporary directory: /tmp/pip-build-tracker-7qtdmwh8
2025-12-06T06:31:39,431 Initialized build tracking at /tmp/pip-build-tracker-7qtdmwh8
2025-12-06T06:31:39,431 Created build tracker: /tmp/pip-build-tracker-7qtdmwh8
2025-12-06T06:31:39,432 Entered build tracker: /tmp/pip-build-tracker-7qtdmwh8
2025-12-06T06:31:39,432 Created temporary directory: /tmp/pip-wheel-6b8x_ln2
2025-12-06T06:31:39,435 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-06T06:31:39,438 Created temporary directory: /tmp/pip-ephem-wheel-cache-zzlg7xli
2025-12-06T06:31:39,459 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-06T06:31:39,462 2 location(s) to search for versions of ourotools:
2025-12-06T06:31:39,462 * https://pypi.org/simple/ourotools/
2025-12-06T06:31:39,462 * https://www.piwheels.org/simple/ourotools/
2025-12-06T06:31:39,463 Fetching project page and analyzing links: https://pypi.org/simple/ourotools/
2025-12-06T06:31:39,464 Getting page https://pypi.org/simple/ourotools/
2025-12-06T06:31:39,465 Found index url https://pypi.org/simple
2025-12-06T06:31:39,678 Fetched page https://pypi.org/simple/ourotools/ as application/vnd.pypi.simple.v1+json
2025-12-06T06:31:39,681   Skipping link: No binaries permitted for ourotools: https://files.pythonhosted.org/packages/de/a9/f2dc55ac61a2bc12db9a928a36ba05648a5a4831ce29acc07b7cbe07e380/ourotools-0.2.7-py3-none-any.whl (from https://pypi.org/simple/ourotools/) (requires-python:<4,>=3.11)
2025-12-06T06:31:39,682   Found link https://files.pythonhosted.org/packages/5b/eb/30e5bdb9676142bfc7cb38f9ef1248a5e95b5452cc00d05e028754574958/ourotools-0.2.7.tar.gz (from https://pypi.org/simple/ourotools/) (requires-python:<4,>=3.11), version: 0.2.7
2025-12-06T06:31:39,682   Skipping link: No binaries permitted for ourotools: https://files.pythonhosted.org/packages/e9/75/60ab16fb2bef382ffeb794acde57ac3a2db7cd33c143506364828cea3e6e/ourotools-0.2.8-py3-none-any.whl (from https://pypi.org/simple/ourotools/) (requires-python:>=3.11)
2025-12-06T06:31:39,683   Found link https://files.pythonhosted.org/packages/23/45/18706a4a1fa6165c6a6126153671a1d4f0721e87abee26669822900bcf01/ourotools-0.2.8.tar.gz (from https://pypi.org/simple/ourotools/) (requires-python:>=3.11), version: 0.2.8
2025-12-06T06:31:39,684   Skipping link: No binaries permitted for ourotools: https://files.pythonhosted.org/packages/20/8c/d91b4539539eba3792c9ebb1b8eee2cb3f9468cf0638bdb89a8d63b5e613/ourotools-0.2.9-py3-none-any.whl (from https://pypi.org/simple/ourotools/) (requires-python:>=3.11)
2025-12-06T06:31:39,685   Found link https://files.pythonhosted.org/packages/14/86/3c61c49de8234844e59bb16cff7f65036027b6c989584b8adca04e1d05c9/ourotools-0.2.9.tar.gz (from https://pypi.org/simple/ourotools/) (requires-python:>=3.11), version: 0.2.9
2025-12-06T06:31:39,686 Fetching project page and analyzing links: https://www.piwheels.org/simple/ourotools/
2025-12-06T06:31:39,687 Getting page https://www.piwheels.org/simple/ourotools/
2025-12-06T06:31:39,688 Found index url https://www.piwheels.org/simple
2025-12-06T06:31:39,878 Fetched page https://www.piwheels.org/simple/ourotools/ as text/html
2025-12-06T06:31:39,880   Skipping link: No binaries permitted for ourotools: https://archive1.piwheels.org/simple/ourotools/ourotools-0.2.8-py3-none-any.whl#sha256=cda2d4cd69842180aee49b334bda89875d563c5e5fb13a8b9920f7be665e71cc (from https://www.piwheels.org/simple/ourotools/) (requires-python:>=3.11)
2025-12-06T06:31:39,880   Skipping link: No binaries permitted for ourotools: https://archive1.piwheels.org/simple/ourotools/ourotools-0.2.7-py3-none-any.whl#sha256=2dfdf7323f394035d4f5179c2f40855b815c8eaaae1acb499f4ce51248609931 (from https://www.piwheels.org/simple/ourotools/) (requires-python:>=3.11, <4)
2025-12-06T06:31:39,881 Skipping link: not a file: https://www.piwheels.org/simple/ourotools/
2025-12-06T06:31:39,882 Skipping link: not a file: https://pypi.org/simple/ourotools/
2025-12-06T06:31:39,901 Given no hashes to check 1 links for project 'ourotools': discarding no candidates
2025-12-06T06:31:39,919 Collecting ourotools==0.2.9
2025-12-06T06:31:39,921   Created temporary directory: /tmp/pip-unpack-uinh3r18
2025-12-06T06:31:40,128   Downloading ourotools-0.2.9.tar.gz (236 kB)
2025-12-06T06:31:40,309   Added ourotools==0.2.9 from https://files.pythonhosted.org/packages/14/86/3c61c49de8234844e59bb16cff7f65036027b6c989584b8adca04e1d05c9/ourotools-0.2.9.tar.gz to build tracker '/tmp/pip-build-tracker-7qtdmwh8'
2025-12-06T06:31:40,310   Running setup.py (path:/tmp/pip-wheel-6b8x_ln2/ourotools_dca9769ba43a41c5800f149260c19879/setup.py) egg_info for package ourotools
2025-12-06T06:31:40,311   Created temporary directory: /tmp/pip-pip-egg-info-2ol_te2e
2025-12-06T06:31:40,312   Preparing metadata (setup.py): started
2025-12-06T06:31:40,313   Running command python setup.py egg_info
2025-12-06T06:31:41,365   running egg_info
2025-12-06T06:31:41,393   creating /tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info
2025-12-06T06:31:41,395   writing /tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/PKG-INFO
2025-12-06T06:31:41,400   writing dependency_links to /tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/dependency_links.txt
2025-12-06T06:31:41,402   writing entry points to /tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/entry_points.txt
2025-12-06T06:31:41,404   writing requirements to /tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/requires.txt
2025-12-06T06:31:41,406   writing top-level names to /tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/top_level.txt
2025-12-06T06:31:41,408   writing manifest file '/tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/SOURCES.txt'
2025-12-06T06:31:41,502   reading manifest file '/tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/SOURCES.txt'
2025-12-06T06:31:41,507   reading manifest template 'MANIFEST.in'
2025-12-06T06:31:41,510   adding license file 'LICENSE'
2025-12-06T06:31:41,513   writing manifest file '/tmp/pip-pip-egg-info-2ol_te2e/ourotools.egg-info/SOURCES.txt'
2025-12-06T06:31:41,626   Preparing metadata (setup.py): finished with status 'done'
2025-12-06T06:31:41,631   Source in /tmp/pip-wheel-6b8x_ln2/ourotools_dca9769ba43a41c5800f149260c19879 has version 0.2.9, which satisfies requirement ourotools==0.2.9 from https://files.pythonhosted.org/packages/14/86/3c61c49de8234844e59bb16cff7f65036027b6c989584b8adca04e1d05c9/ourotools-0.2.9.tar.gz
2025-12-06T06:31:41,633   Removed ourotools==0.2.9 from https://files.pythonhosted.org/packages/14/86/3c61c49de8234844e59bb16cff7f65036027b6c989584b8adca04e1d05c9/ourotools-0.2.9.tar.gz from build tracker '/tmp/pip-build-tracker-7qtdmwh8'
2025-12-06T06:31:41,642 Created temporary directory: /tmp/pip-unpack-xvms0qw0
2025-12-06T06:31:41,643 Building wheels for collected packages: ourotools
2025-12-06T06:31:41,647   Created temporary directory: /tmp/pip-wheel-4j38il7b
2025-12-06T06:31:41,648   Building wheel for ourotools (setup.py): started
2025-12-06T06:31:41,649   Destination directory: /tmp/pip-wheel-4j38il7b
2025-12-06T06:31:41,650   Running command python setup.py bdist_wheel
2025-12-06T06:31:42,551   running bdist_wheel
2025-12-06T06:31:42,931   running build
2025-12-06T06:31:42,932   running build_py
2025-12-06T06:31:42,963   creating build/lib/ourotools
2025-12-06T06:31:42,965   copying ourotools/__init__.py -> build/lib/ourotools
2025-12-06T06:31:42,967   copying ourotools/__main__.py -> build/lib/ourotools
2025-12-06T06:31:42,969   creating build/lib/ourotools/core
2025-12-06T06:31:42,970   copying ourotools/core/SAM.py -> build/lib/ourotools/core
2025-12-06T06:31:42,973   copying ourotools/core/alternative_splicing_analysis.py -> build/lib/ourotools/core
2025-12-06T06:31:42,976   copying ourotools/core/BA.py -> build/lib/ourotools/core
2025-12-06T06:31:42,980   copying ourotools/core/SC.py -> build/lib/ourotools/core
2025-12-06T06:31:42,984   copying ourotools/core/SEQ.py -> build/lib/ourotools/core
2025-12-06T06:31:42,990   copying ourotools/core/__init__.py -> build/lib/ourotools/core
2025-12-06T06:31:42,999   copying ourotools/core/core.py -> build/lib/ourotools/core
2025-12-06T06:31:43,017   copying ourotools/core/STR.py -> build/lib/ourotools/core
2025-12-06T06:31:43,019   copying ourotools/core/OT.py -> build/lib/ourotools/core
2025-12-06T06:31:43,022   copying ourotools/core/ONT.py -> build/lib/ourotools/core
2025-12-06T06:31:43,024   copying ourotools/core/MAP.py -> build/lib/ourotools/core
2025-12-06T06:31:43,026   copying ourotools/core/biobookshelf.py -> build/lib/ourotools/core
2025-12-06T06:31:43,030   running egg_info
2025-12-06T06:31:43,057   writing ourotools.egg-info/PKG-INFO
2025-12-06T06:31:43,063   writing dependency_links to ourotools.egg-info/dependency_links.txt
2025-12-06T06:31:43,065   writing entry points to ourotools.egg-info/entry_points.txt
2025-12-06T06:31:43,067   writing requirements to ourotools.egg-info/requires.txt
2025-12-06T06:31:43,068   writing top-level names to ourotools.egg-info/top_level.txt
2025-12-06T06:31:43,100   reading manifest file 'ourotools.egg-info/SOURCES.txt'
2025-12-06T06:31:43,103   reading manifest template 'MANIFEST.in'
2025-12-06T06:31:43,104   adding license file 'LICENSE'
2025-12-06T06:31:43,107   writing manifest file 'ourotools.egg-info/SOURCES.txt'
2025-12-06T06:31:43,138   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-12-06T06:31:43,138   !!

2025-12-06T06:31:43,139           ********************************************************************************
2025-12-06T06:31:43,140           Please avoid running ``setup.py`` directly.
2025-12-06T06:31:43,141           Instead, use pypa/build, pypa/installer or other
2025-12-06T06:31:43,142           standards-based tools.

2025-12-06T06:31:43,143           This deprecation is overdue, please update your project and remove deprecated
2025-12-06T06:31:43,144           calls to avoid build errors in the future.

2025-12-06T06:31:43,145           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-12-06T06:31:43,145           ********************************************************************************

2025-12-06T06:31:43,146   !!
2025-12-06T06:31:43,147     self.initialize_options()
2025-12-06T06:31:43,170   installing to build/bdist.linux-armv7l/wheel
2025-12-06T06:31:43,171   running install
2025-12-06T06:31:43,195   running install_lib
2025-12-06T06:31:43,230   creating build/bdist.linux-armv7l/wheel
2025-12-06T06:31:43,235   creating build/bdist.linux-armv7l/wheel/ourotools
2025-12-06T06:31:43,237   copying build/lib/ourotools/__init__.py -> build/bdist.linux-armv7l/wheel/./ourotools
2025-12-06T06:31:43,240   copying build/lib/ourotools/__main__.py -> build/bdist.linux-armv7l/wheel/./ourotools
2025-12-06T06:31:43,245   creating build/bdist.linux-armv7l/wheel/ourotools/core
2025-12-06T06:31:43,247   copying build/lib/ourotools/core/SAM.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,255   copying build/lib/ourotools/core/alternative_splicing_analysis.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,268   copying build/lib/ourotools/core/BA.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,278   copying build/lib/ourotools/core/SC.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,286   copying build/lib/ourotools/core/SEQ.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,288   copying build/lib/ourotools/core/__init__.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,290   copying build/lib/ourotools/core/core.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,305   copying build/lib/ourotools/core/STR.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,307   copying build/lib/ourotools/core/OT.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,310   copying build/lib/ourotools/core/ONT.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,312   copying build/lib/ourotools/core/MAP.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,314   copying build/lib/ourotools/core/biobookshelf.py -> build/bdist.linux-armv7l/wheel/./ourotools/core
2025-12-06T06:31:43,319   running install_egg_info
2025-12-06T06:31:43,355   Copying ourotools.egg-info to build/bdist.linux-armv7l/wheel/./ourotools-0.2.9-py3.11.egg-info
2025-12-06T06:31:43,367   running install_scripts
2025-12-06T06:31:43,380   creating build/bdist.linux-armv7l/wheel/ourotools-0.2.9.dist-info/WHEEL
2025-12-06T06:31:43,382   creating '/tmp/pip-wheel-4j38il7b/ourotools-0.2.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-12-06T06:31:43,384   adding 'ourotools/__init__.py'
2025-12-06T06:31:43,386   adding 'ourotools/__main__.py'
2025-12-06T06:31:43,388   adding 'ourotools/core/BA.py'
2025-12-06T06:31:43,390   adding 'ourotools/core/MAP.py'
2025-12-06T06:31:43,391   adding 'ourotools/core/ONT.py'
2025-12-06T06:31:43,393   adding 'ourotools/core/OT.py'
2025-12-06T06:31:43,396   adding 'ourotools/core/SAM.py'
2025-12-06T06:31:43,400   adding 'ourotools/core/SC.py'
2025-12-06T06:31:43,401   adding 'ourotools/core/SEQ.py'
2025-12-06T06:31:43,404   adding 'ourotools/core/STR.py'
2025-12-06T06:31:43,405   adding 'ourotools/core/__init__.py'
2025-12-06T06:31:43,411   adding 'ourotools/core/alternative_splicing_analysis.py'
2025-12-06T06:31:43,425   adding 'ourotools/core/biobookshelf.py'
2025-12-06T06:31:43,506   adding 'ourotools/core/core.py'
2025-12-06T06:31:43,519   adding 'ourotools-0.2.9.dist-info/licenses/LICENSE'
2025-12-06T06:31:43,525   adding 'ourotools-0.2.9.dist-info/METADATA'
2025-12-06T06:31:43,526   adding 'ourotools-0.2.9.dist-info/WHEEL'
2025-12-06T06:31:43,528   adding 'ourotools-0.2.9.dist-info/entry_points.txt'
2025-12-06T06:31:43,529   adding 'ourotools-0.2.9.dist-info/top_level.txt'
2025-12-06T06:31:43,531   adding 'ourotools-0.2.9.dist-info/RECORD'
2025-12-06T06:31:43,536   removing build/bdist.linux-armv7l/wheel
2025-12-06T06:31:43,669   Building wheel for ourotools (setup.py): finished with status 'done'
2025-12-06T06:31:43,673   Created wheel for ourotools: filename=ourotools-0.2.9-py3-none-any.whl size=224855 sha256=aeb2d9b760ac33c2bebdb6c4c3045621037b9ee9d7f5b4fad30e3bf853d04d49
2025-12-06T06:31:43,675   Stored in directory: /tmp/pip-ephem-wheel-cache-zzlg7xli/wheels/b9/08/ec/f06304d207a36b6b12897371bedbd85c486de9abd928a208a8
2025-12-06T06:31:43,690 Successfully built ourotools
2025-12-06T06:31:43,702 Removed build tracker: '/tmp/pip-build-tracker-7qtdmwh8'