2025-12-07T06:09:31,535 Created temporary directory: /tmp/pip-ephem-wheel-cache-3g2jlomy 2025-12-07T06:09:31,537 Created temporary directory: /tmp/pip-build-tracker-a4mkxxqh 2025-12-07T06:09:31,537 Initialized build tracking at /tmp/pip-build-tracker-a4mkxxqh 2025-12-07T06:09:31,538 Created build tracker: /tmp/pip-build-tracker-a4mkxxqh 2025-12-07T06:09:31,538 Entered build tracker: /tmp/pip-build-tracker-a4mkxxqh 2025-12-07T06:09:31,539 Created temporary directory: /tmp/pip-wheel-l8le_c_1 2025-12-07T06:09:31,542 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-07T06:09:31,544 Created temporary directory: /tmp/pip-ephem-wheel-cache-tzlhx3rh 2025-12-07T06:09:31,569 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-07T06:09:31,572 2 location(s) to search for versions of viennarna: 2025-12-07T06:09:31,572 * https://pypi.org/simple/viennarna/ 2025-12-07T06:09:31,572 * https://www.piwheels.org/simple/viennarna/ 2025-12-07T06:09:31,573 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2025-12-07T06:09:31,574 Getting page https://pypi.org/simple/viennarna/ 2025-12-07T06:09:31,575 Found index url https://pypi.org/simple 2025-12-07T06:09:31,792 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2025-12-07T06:09:31,820 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2025-12-07T06:09:31,821 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2025-12-07T06:09:31,822 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,823 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,824 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,825 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,825 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,826 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,827 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,827 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,828 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,830 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,831 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,832 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,834 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,835 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,836 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,837 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,837 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,838 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,838 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2025-12-07T06:09:31,839 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,840 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/f5/14/8a958e38331b63c35f688645a7c8ca789e016290d25ef26faf9d34ea6d72/ViennaRNA-2.6.3-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,852 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b7/9c/e433da3ed44a34fef8aa9710e6838ef44ddb314455fc4b1a071edb952f23/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,852 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e3/90/8324e8a078d271eea60e30163e0097f40b5fffcfc2f22ebc60af685cb4ce/ViennaRNA-2.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,853 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/1e/65/d6fc56d73706a39b351d04116b9634b270d48b15310cd49f18aba40b232a/ViennaRNA-2.7.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,885 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/90/a2/5a50243d49cdeccf4dd21ae0007e49f156c23cb9b66f2c4010d3718dbcaa/ViennaRNA-2.7.0-cp312-cp312-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,886 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9c/58/c50ea1c787da20812b1d8a1419984684648aa7d8b11ab2536784e175d934/ViennaRNA-2.7.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,886 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/62/b4/c3a50349e938326bd456ca430f6569d04151f5c9263ec67dc3f2541ddb48/ViennaRNA-2.7.0-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,889 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/34/ec/e8d83e0e06b13e2b581070d019b16d898a33552f317a6ae72052a934f666/ViennaRNA-2.7.0-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,890 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2a/c1/ef2bfd2b91641e0412a794968d5adb9aafd40992621fb5386cc836cea04d/ViennaRNA-2.7.0-cp313-cp313-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,890 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/97/c8/ba889f0a455e9cb41e52bb5a6617a1ab88d114e25ca797c436816f7cf311/ViennaRNA-2.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,891 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2e/f9/136bcb00c5169b53299a6c65ffb9572c76c142c578d251b121aaffdc0773/ViennaRNA-2.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,891 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7d/61/44e8f1be14dee657b1d0faa617c1dfd6b288cb739c4c3fbf9a7832305e22/ViennaRNA-2.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,892 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/33/c4/d969033090c802b96b766fc85b61457a290d5f38c03e7686f229aef8ba71/ViennaRNA-2.7.0-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,893 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5e/d1/85916f237369640fc85aff22392ecf4fb19355c200190da2ae5772ed6aa1/ViennaRNA-2.7.0-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,893 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/31/ee/658f195f7f744d01d8d5261262c17257778bd62bf8e407c83ef207fb17b7/ViennaRNA-2.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,894 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/11/2f/73850d076dd208fde88585e498ba4a66672edae3d0a593f1ab0fb0888c3d/ViennaRNA-2.7.0-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,895 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/aa/62/ad8d49122f8cf0a687dfcf48d97493a2ed1dae38cb4f1784eb8483abf6ca/ViennaRNA-2.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,895 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f0/b6/2ec5f887d6dee750503935dab31121321734c58060684dd8db4a269ee272/ViennaRNA-2.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,896 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ef/25/b254e7c48f851be16e69d3ed8f7b67922353a870490533b1512b85e06b7c/ViennaRNA-2.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,897 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fc/0a/9b26bc69f08d555493d44a89583dd6a7238db2c12187cbcbc42575558664/ViennaRNA-2.7.0-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,897 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/1a/3f7fa8d4659a5c39212b3423a075569958a51888e51dae3c3f690bc34e8d/ViennaRNA-2.7.0-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,898 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/42/ca/caed18628b4b2ecb04e03eb61598432050104f2d75b1a2f5b2868274b20f/ViennaRNA-2.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,899 Found link https://files.pythonhosted.org/packages/86/94/c65cfb4666efed90fc0fc241ee646054c5f1f7d16e83a39ab43ce7dfbe35/viennarna-2.7.0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.7.0 2025-12-07T06:09:31,900 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d1/17/970acf06e27b858bf9ef7e6712f8236dbe2505409740ecefe7a0a0be713d/viennarna-2.7.1-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,900 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/49/ce/d5d141c474cc11936961d073c553ba89e25eaf3ceb7b16d4b69c28034638/viennarna-2.7.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,901 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c1/77/b02ac2de972f96af3cabc9cd1f149b3e0156171be64797cfb455c6ef536a/viennarna-2.7.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,901 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b4/3f/c382081902201de41cb8860c6ff70704c143e55205926bf53ccf6aae252a/viennarna-2.7.1-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,902 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/18/6f/3b823539ae66b644356a42db014fcda6b517022a2bfdeae8dbb35edad294/viennarna-2.7.1-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,903 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c5/58/3a7621760b25cb9fd0efb7240860cf081f2318419a72bc26b94d5f70dcc3/viennarna-2.7.1-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,903 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a0/d9/0f9c85f36a93cf15d672d9c018f80ccca577e0996a80c76327f09cabb760/viennarna-2.7.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,904 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0f/ae/08edb7dc2cecbed982237b939f768940f677caff08de4ce597dee6f28b00/viennarna-2.7.1-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,905 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/35/be/cbb351a84b1427b481145fd03a7ad3d4ede3bf57b21e8656436e60a33529/viennarna-2.7.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,906 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9e/83/619574750e1fe29312c0a35e26c08f95bb6b143e4df3fb51298b958f8925/viennarna-2.7.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,906 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a7/6e/e6dea401481bed8c29d251d4809a42005ded049019615fadcc72429ada75/viennarna-2.7.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,907 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7c/35/753130b43675e4bf5c73e22b4411848b99e29a8e773c87b122d674ce4450/viennarna-2.7.1-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,907 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/15/19/c32f91593540fb566ae51bc5081b2304b6237bcdb31be5f7fc516a1150a3/viennarna-2.7.1-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,908 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/b0/8ce78b8acf8de310c0248331e2cb193a5a82343ebfb31302847b333aa8c5/viennarna-2.7.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,908 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/de/9a/642029293c556108dd52d1539c731e4e496d4c5b36fe446b7b77f1adac9b/viennarna-2.7.1-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,911 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e7/9a/807e9a672b4036dd8a5ea13a690ee635c9b6f4bf5a97a8d1dbc88631b423/viennarna-2.7.1-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,912 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7d/4a/50968108ed4c091c1c4dda49d8c6788fa4f52f2cb590b906281be211fdd3/viennarna-2.7.1-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,912 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3e/16/3c14111c9c7390d82c4f01e73e12b7c77d0496ab639df4f3be1966b66514/viennarna-2.7.1-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,913 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e4/25/47be190d844c23289270329ceb2ef7d8393cb699315fcc0d9b106c8f96af/viennarna-2.7.1-cp313-cp313-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,914 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4d/27/31a786e36ed939ed55a81de0723a3eb28bbc73828dc618921371639bdc75/viennarna-2.7.1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,914 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/dc/cf/2dbc5f800b58c623549928ffb540d25ac76715b997467b4b4ea93e8c59d1/viennarna-2.7.1-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,918 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9e/b1/9622a292f0869acae0876f025732c788f739cc92211465df58ffd9499f47/viennarna-2.7.1-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,919 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b2/df/ea2987e6341e96c2f87be68a9e1fd7f3b433e5584b732d841c0abf6dd374/viennarna-2.7.1-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,920 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0a/98/a9f9040210aa946265801caaaf329af94c1c80695debd8c56eebb440a654/viennarna-2.7.1-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-07T06:09:31,921 Found link https://files.pythonhosted.org/packages/cd/a2/3dedf55c11205c663f00ac408eddc48f2d5aef6cb0a3fdb0d81294a7c903/viennarna-2.7.1.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.7.1 2025-12-07T06:09:31,922 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2025-12-07T06:09:31,922 Getting page https://www.piwheels.org/simple/viennarna/ 2025-12-07T06:09:31,924 Found index url https://www.piwheels.org/simple 2025-12-07T06:09:32,085 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2025-12-07T06:09:32,086 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2025-12-07T06:09:32,087 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2025-12-07T06:09:32,106 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2025-12-07T06:09:32,124 Collecting viennarna==2.7.1 2025-12-07T06:09:32,126 Created temporary directory: /tmp/pip-unpack-9a_gnrdc 2025-12-07T06:09:32,265 Downloading viennarna-2.7.1.tar.gz (6.3 MB) 2025-12-07T06:09:38,225 Added viennarna==2.7.1 from https://files.pythonhosted.org/packages/cd/a2/3dedf55c11205c663f00ac408eddc48f2d5aef6cb0a3fdb0d81294a7c903/viennarna-2.7.1.tar.gz to build tracker '/tmp/pip-build-tracker-a4mkxxqh' 2025-12-07T06:09:38,230 Created temporary directory: /tmp/pip-build-env-ci15k_if 2025-12-07T06:09:38,235 Installing build dependencies: started 2025-12-07T06:09:38,236 Running command pip subprocess to install build dependencies 2025-12-07T06:09:39,407 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-07T06:09:40,049 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-07T06:09:40,072 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-07T06:09:41,792 Collecting setuptools>=61.0 2025-12-07T06:09:41,888 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-07T06:09:44,788 Installing collected packages: setuptools 2025-12-07T06:09:48,466 Successfully installed setuptools-80.9.0 2025-12-07T06:09:48,732 Installing build dependencies: finished with status 'done' 2025-12-07T06:09:48,740 Getting requirements to build wheel: started 2025-12-07T06:09:48,741 Running command Getting requirements to build wheel 2025-12-07T06:09:49,443 /tmp/pip-build-env-ci15k_if/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-07T06:09:49,443 !! 2025-12-07T06:09:49,444 ******************************************************************************** 2025-12-07T06:09:49,445 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-07T06:09:49,446 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-07T06:09:49,447 or your builds will no longer be supported. 2025-12-07T06:09:49,448 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-07T06:09:49,449 ******************************************************************************** 2025-12-07T06:09:49,450 !! 2025-12-07T06:09:49,450 corresp(dist, value, root_dir) 2025-12-07T06:09:49,525 running egg_info 2025-12-07T06:09:49,532 writing ViennaRNA.egg-info/PKG-INFO 2025-12-07T06:09:49,536 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2025-12-07T06:09:49,538 writing top-level names to ViennaRNA.egg-info/top_level.txt 2025-12-07T06:09:49,569 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-07T06:09:49,905 reading manifest template 'MANIFEST.in' 2025-12-07T06:09:51,944 adding license file 'COPYING' 2025-12-07T06:09:51,944 adding license file 'AUTHORS' 2025-12-07T06:09:52,038 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-07T06:09:52,140 Getting requirements to build wheel: finished with status 'done' 2025-12-07T06:09:52,144 Created temporary directory: /tmp/pip-modern-metadata-35dgn0d8 2025-12-07T06:09:52,146 Preparing metadata (pyproject.toml): started 2025-12-07T06:09:52,147 Running command Preparing metadata (pyproject.toml) 2025-12-07T06:09:52,804 /tmp/pip-build-env-ci15k_if/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-07T06:09:52,804 !! 2025-12-07T06:09:52,805 ******************************************************************************** 2025-12-07T06:09:52,806 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-07T06:09:52,807 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-07T06:09:52,807 or your builds will no longer be supported. 2025-12-07T06:09:52,809 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-07T06:09:52,809 ******************************************************************************** 2025-12-07T06:09:52,810 !! 2025-12-07T06:09:52,811 corresp(dist, value, root_dir) 2025-12-07T06:09:52,894 running dist_info 2025-12-07T06:09:52,907 creating /tmp/pip-modern-metadata-35dgn0d8/ViennaRNA.egg-info 2025-12-07T06:09:52,908 writing /tmp/pip-modern-metadata-35dgn0d8/ViennaRNA.egg-info/PKG-INFO 2025-12-07T06:09:52,912 writing dependency_links to /tmp/pip-modern-metadata-35dgn0d8/ViennaRNA.egg-info/dependency_links.txt 2025-12-07T06:09:52,917 writing top-level names to /tmp/pip-modern-metadata-35dgn0d8/ViennaRNA.egg-info/top_level.txt 2025-12-07T06:09:52,918 writing manifest file '/tmp/pip-modern-metadata-35dgn0d8/ViennaRNA.egg-info/SOURCES.txt' 2025-12-07T06:09:53,164 reading manifest file '/tmp/pip-modern-metadata-35dgn0d8/ViennaRNA.egg-info/SOURCES.txt' 2025-12-07T06:09:53,167 reading manifest template 'MANIFEST.in' 2025-12-07T06:09:55,173 adding license file 'COPYING' 2025-12-07T06:09:55,174 adding license file 'AUTHORS' 2025-12-07T06:09:55,268 writing manifest file '/tmp/pip-modern-metadata-35dgn0d8/ViennaRNA.egg-info/SOURCES.txt' 2025-12-07T06:09:55,271 creating '/tmp/pip-modern-metadata-35dgn0d8/viennarna-2.7.1.dist-info' 2025-12-07T06:09:55,401 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-07T06:09:55,407 Source in /tmp/pip-wheel-l8le_c_1/viennarna_c8343018a0dc4259b4556d593b44ae39 has version 2.7.1, which satisfies requirement viennarna==2.7.1 from https://files.pythonhosted.org/packages/cd/a2/3dedf55c11205c663f00ac408eddc48f2d5aef6cb0a3fdb0d81294a7c903/viennarna-2.7.1.tar.gz 2025-12-07T06:09:55,409 Removed viennarna==2.7.1 from https://files.pythonhosted.org/packages/cd/a2/3dedf55c11205c663f00ac408eddc48f2d5aef6cb0a3fdb0d81294a7c903/viennarna-2.7.1.tar.gz from build tracker '/tmp/pip-build-tracker-a4mkxxqh' 2025-12-07T06:09:55,416 Created temporary directory: /tmp/pip-unpack-fkuelasu 2025-12-07T06:09:55,417 Building wheels for collected packages: viennarna 2025-12-07T06:09:55,422 Created temporary directory: /tmp/pip-wheel-14a7yls4 2025-12-07T06:09:55,422 Destination directory: /tmp/pip-wheel-14a7yls4 2025-12-07T06:09:55,425 Building wheel for viennarna (pyproject.toml): started 2025-12-07T06:09:55,426 Running command Building wheel for viennarna (pyproject.toml) 2025-12-07T06:09:56,023 /tmp/pip-build-env-ci15k_if/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-07T06:09:56,024 !! 2025-12-07T06:09:56,025 ******************************************************************************** 2025-12-07T06:09:56,026 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-07T06:09:56,027 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-07T06:09:56,028 or your builds will no longer be supported. 2025-12-07T06:09:56,029 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-07T06:09:56,029 ******************************************************************************** 2025-12-07T06:09:56,030 !! 2025-12-07T06:09:56,031 corresp(dist, value, root_dir) 2025-12-07T06:09:56,095 running bdist_wheel 2025-12-07T06:09:56,113 running build 2025-12-07T06:09:56,114 running build_py 2025-12-07T06:09:56,120 creating build/lib.linux-armv7l-cpython-311/RNA 2025-12-07T06:09:56,123 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-311/RNA 2025-12-07T06:09:56,125 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-311/RNA 2025-12-07T06:09:56,145 creating build/lib.linux-armv7l-cpython-311/ViennaRNA 2025-12-07T06:09:56,147 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-311/ViennaRNA 2025-12-07T06:09:56,157 running egg_info 2025-12-07T06:09:56,168 writing ViennaRNA.egg-info/PKG-INFO 2025-12-07T06:09:56,172 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2025-12-07T06:09:56,173 writing top-level names to ViennaRNA.egg-info/top_level.txt 2025-12-07T06:09:56,187 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-07T06:09:56,292 reading manifest template 'MANIFEST.in' 2025-12-07T06:09:57,993 adding license file 'COPYING' 2025-12-07T06:09:57,994 adding license file 'AUTHORS' 2025-12-07T06:09:58,085 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-07T06:09:58,154 running build_ext 2025-12-07T06:09:58,162 building 'RNA._RNA' extension 2025-12-07T06:09:58,173 creating build/temp.linux-armv7l-cpython-311/interfaces/Python 2025-12-07T06:09:58,175 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA 2025-12-07T06:09:58,177 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack 2025-12-07T06:09:58,179 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics 2025-12-07T06:09:58,180 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints 2025-12-07T06:09:58,182 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/data 2025-12-07T06:09:58,183 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures 2025-12-07T06:09:58,185 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval 2025-12-07T06:09:58,187 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar 2025-12-07T06:09:58,188 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse 2025-12-07T06:09:58,190 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io 2025-12-07T06:09:58,191 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape 2025-12-07T06:09:58,193 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math 2025-12-07T06:09:58,194 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe 2025-12-07T06:09:58,197 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params 2025-12-07T06:09:58,199 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc 2025-12-07T06:09:58,201 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler 2025-12-07T06:09:58,204 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview 2025-12-07T06:09:58,206 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probabilities 2025-12-07T06:09:58,207 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing 2025-12-07T06:09:58,208 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sampling 2025-12-07T06:09:58,209 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search 2025-12-07T06:09:58,210 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences 2025-12-07T06:09:58,211 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures 2025-12-07T06:09:58,213 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt 2025-12-07T06:09:58,214 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils 2025-12-07T06:09:58,216 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/zscore 2025-12-07T06:09:58,217 creating build/temp.linux-armv7l-cpython-311/src/cephes 2025-12-07T06:09:58,218 creating build/temp.linux-armv7l-cpython-311/src/json 2025-12-07T06:09:58,219 creating build/temp.linux-armv7l-cpython-311/src/libsvm-3.35 2025-12-07T06:09:58,220 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-311/interfaces/Python/RNA_wrap.o -fopenmp 2025-12-07T06:10:02,312 interfaces/Python/RNA_wrap.cpp: In function ‘void SWIG_TypeClientData(swig_type_info*, void*)’: 2025-12-07T06:10:02,313 interfaces/Python/RNA_wrap.cpp:692:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:10:02,313 692 | for (cast = head; (cast - head) <= head->value; cast++) { 2025-12-07T06:10:02,314 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2025-12-07T06:10:14,291 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg__get(const var_array*, int)’: 2025-12-07T06:10:14,291 interfaces/Python/RNA_wrap.cpp:7998:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,292 7998 | if (((i < 0) && (-i >= max_i)) || 2025-12-07T06:10:14,293 | ~~~^~~~~~~~ 2025-12-07T06:10:14,293 interfaces/Python/RNA_wrap.cpp:7999:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,294 7999 | ((i >= 0) && (i >= max_i))) 2025-12-07T06:10:14,295 | ~~^~~~~~~~ 2025-12-07T06:10:14,323 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg__get(const var_array*, int)’: 2025-12-07T06:10:14,324 interfaces/Python/RNA_wrap.cpp:8211:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,325 8211 | if (((i < 0) && (-i >= max_i)) || 2025-12-07T06:10:14,325 | ~~~^~~~~~~~ 2025-12-07T06:10:14,326 interfaces/Python/RNA_wrap.cpp:8212:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,327 8212 | ((i >= 0) && (i >= max_i))) 2025-12-07T06:10:14,327 | ~~^~~~~~~~ 2025-12-07T06:10:14,350 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg__get(const var_array*, int)’: 2025-12-07T06:10:14,350 interfaces/Python/RNA_wrap.cpp:8401:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,351 8401 | if (((i < 0) && (-i >= max_i)) || 2025-12-07T06:10:14,352 | ~~~^~~~~~~~ 2025-12-07T06:10:14,352 interfaces/Python/RNA_wrap.cpp:8402:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,353 8402 | ((i >= 0) && (i >= max_i))) 2025-12-07T06:10:14,354 | ~~^~~~~~~~ 2025-12-07T06:10:14,368 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg__get(const var_array*, int)’: 2025-12-07T06:10:14,369 interfaces/Python/RNA_wrap.cpp:8614:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,370 8614 | if (((i < 0) && (-i >= max_i)) || 2025-12-07T06:10:14,370 | ~~~^~~~~~~~ 2025-12-07T06:10:14,371 interfaces/Python/RNA_wrap.cpp:8615:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,372 8615 | ((i >= 0) && (i >= max_i))) 2025-12-07T06:10:14,372 | ~~^~~~~~~~ 2025-12-07T06:10:14,386 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg__get(const var_array*, int)’: 2025-12-07T06:10:14,387 interfaces/Python/RNA_wrap.cpp:8804:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,387 8804 | if (((i < 0) && (-i >= max_i)) || 2025-12-07T06:10:14,388 | ~~~^~~~~~~~ 2025-12-07T06:10:14,389 interfaces/Python/RNA_wrap.cpp:8805:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,389 8805 | ((i >= 0) && (i >= max_i))) 2025-12-07T06:10:14,390 | ~~^~~~~~~~ 2025-12-07T06:10:14,405 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg__get(const var_array*, int)’: 2025-12-07T06:10:14,406 interfaces/Python/RNA_wrap.cpp:8994:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,407 8994 | if (((i < 0) && (-i >= max_i)) || 2025-12-07T06:10:14,407 | ~~~^~~~~~~~ 2025-12-07T06:10:14,408 interfaces/Python/RNA_wrap.cpp:8995:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,409 8995 | ((i >= 0) && (i >= max_i))) 2025-12-07T06:10:14,409 | ~~^~~~~~~~ 2025-12-07T06:10:14,426 interfaces/Python/RNA_wrap.cpp: In function ‘const vrna_move_t var_array_Sl_vrna_move_t_Sg__get(const var_array*, int)’: 2025-12-07T06:10:14,427 interfaces/Python/RNA_wrap.cpp:9184:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,427 9184 | if (((i < 0) && (-i >= max_i)) || 2025-12-07T06:10:14,428 | ~~~^~~~~~~~ 2025-12-07T06:10:14,429 interfaces/Python/RNA_wrap.cpp:9185:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,429 9185 | ((i >= 0) && (i >= max_i))) 2025-12-07T06:10:14,430 | ~~^~~~~~~~ 2025-12-07T06:10:14,506 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_str_to_dbl_array(const std::string&, const std::string&, unsigned int)’: 2025-12-07T06:10:14,507 interfaces/Python/RNA_wrap.cpp:9593:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-12-07T06:10:14,507 9593 | printf("v[%ld] = %f", i, c_vs[i]); 2025-12-07T06:10:14,508 | ~~^ ~ 2025-12-07T06:10:14,509 | | | 2025-12-07T06:10:14,509 | long int size_t {aka unsigned int} 2025-12-07T06:10:14,510 | %d 2025-12-07T06:10:14,524 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2025-12-07T06:10:14,524 interfaces/Python/RNA_wrap.cpp:9733:21: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:10:14,525 9733 | int i; 2025-12-07T06:10:14,525 | ^ 2025-12-07T06:10:14,526 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2025-12-07T06:10:14,527 interfaces/Python/RNA_wrap.cpp:9787:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:10:14,527 9787 | if (pt[0] != pt.size() - 1) 2025-12-07T06:10:14,538 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2025-12-07T06:10:14,539 interfaces/Python/RNA_wrap.cpp:9941:25: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:10:14,539 9941 | int i, *idx; 2025-12-07T06:10:14,540 | ^ 2025-12-07T06:10:14,612 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* probing_data_linear(std::vector >, std::vector >, PyObject*, PyObject*, PyObject*, unsigned int)’: 2025-12-07T06:10:14,613 interfaces/Python/RNA_wrap.cpp:11220:23: warning: unused variable ‘func_is_tuple’ [-Wunused-variable] 2025-12-07T06:10:14,613 11220 | unsigned char func_is_tuple, func_is_list; 2025-12-07T06:10:14,614 | ^~~~~~~~~~~~~ 2025-12-07T06:10:14,615 interfaces/Python/RNA_wrap.cpp:11220:38: warning: unused variable ‘func_is_list’ [-Wunused-variable] 2025-12-07T06:10:14,615 11220 | unsigned char func_is_tuple, func_is_list; 2025-12-07T06:10:14,616 | ^~~~~~~~~~~~ 2025-12-07T06:10:14,617 interfaces/Python/RNA_wrap.cpp:11221:23: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-07T06:10:14,617 11221 | unsigned int s; 2025-12-07T06:10:14,618 | ^ 2025-12-07T06:10:14,620 interfaces/Python/RNA_wrap.cpp: In function ‘double* py_wrap_probing_strategy_callback(vrna_fold_compound_t*, const double*, size_t, unsigned int, void*)’: 2025-12-07T06:10:14,621 interfaces/Python/RNA_wrap.cpp:11262:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,622 11262 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,622 | ^~~~~~~ 2025-12-07T06:10:14,635 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_4(std::vector >, std::allocator > > >, std::vector >, std::vector >)’: 2025-12-07T06:10:14,635 interfaces/Python/RNA_wrap.cpp:11555:31: warning: unused variable ‘n_seq’ [-Wunused-variable] 2025-12-07T06:10:14,636 11555 | unsigned int n_seq = reactivities.size(); 2025-12-07T06:10:14,637 | ^~~~~ 2025-12-07T06:10:14,643 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_5(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >)’: 2025-12-07T06:10:14,644 interfaces/Python/RNA_wrap.cpp:11592:31: warning: unused variable ‘n_seq’ [-Wunused-variable] 2025-12-07T06:10:14,644 11592 | unsigned int n_seq = reactivities.size(); 2025-12-07T06:10:14,645 | ^~~~~ 2025-12-07T06:10:14,656 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* probing_data_zarringhalam_comparative(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >, unsigned int)’: 2025-12-07T06:10:14,657 interfaces/Python/RNA_wrap.cpp:11791:31: warning: unused variable ‘n_seq’ [-Wunused-variable] 2025-12-07T06:10:14,658 11791 | unsigned int n_seq = reactivities.size(); 2025-12-07T06:10:14,658 | ^~~~~ 2025-12-07T06:10:14,679 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2025-12-07T06:10:14,679 interfaces/Python/RNA_wrap.cpp:12183:11: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-07T06:10:14,680 12183 | char *s, **tok, **ptr, *struc, *sequence; 2025-12-07T06:10:14,680 | ^ 2025-12-07T06:10:14,682 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2025-12-07T06:10:14,683 interfaces/Python/RNA_wrap.cpp:12234:11: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-07T06:10:14,683 12234 | char *s, **tok, **ptr, *struc, *sequence; 2025-12-07T06:10:14,684 | ^ 2025-12-07T06:10:14,694 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2025-12-07T06:10:14,694 interfaces/Python/RNA_wrap.cpp:12487:12: warning: unused variable ‘result’ [-Wunused-variable] 2025-12-07T06:10:14,695 12487 | double result = 0; 2025-12-07T06:10:14,695 | ^~~~~~ 2025-12-07T06:10:14,763 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2025-12-07T06:10:14,764 interfaces/Python/RNA_wrap.cpp:13222:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:10:14,764 13222 | int i; 2025-12-07T06:10:14,765 | ^ 2025-12-07T06:10:14,891 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2025-12-07T06:10:14,892 interfaces/Python/RNA_wrap.cpp:14728:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,892 14728 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,893 | ^~~~~~~ 2025-12-07T06:10:14,898 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2025-12-07T06:10:14,899 interfaces/Python/RNA_wrap.cpp:14800:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,899 14800 | PyObject *func, *arglist, *result, *bp, *err; 2025-12-07T06:10:14,900 | ^~~~~~~ 2025-12-07T06:10:14,903 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2025-12-07T06:10:14,903 interfaces/Python/RNA_wrap.cpp:14919:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,904 14919 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,905 | ^~~~~~~ 2025-12-07T06:10:14,916 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2025-12-07T06:10:14,917 interfaces/Python/RNA_wrap.cpp:15359:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,918 15359 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2025-12-07T06:10:14,918 | ^~~~~~~ 2025-12-07T06:10:14,920 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2025-12-07T06:10:14,921 interfaces/Python/RNA_wrap.cpp:15419:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,921 15419 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2025-12-07T06:10:14,922 | ^~~~~~~ 2025-12-07T06:10:14,924 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2025-12-07T06:10:14,924 interfaces/Python/RNA_wrap.cpp:15479:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,925 15479 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2025-12-07T06:10:14,925 | ^~~~~~~ 2025-12-07T06:10:14,927 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2025-12-07T06:10:14,928 interfaces/Python/RNA_wrap.cpp:15538:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,928 15538 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2025-12-07T06:10:14,929 | ^~~~~~~ 2025-12-07T06:10:14,931 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2025-12-07T06:10:14,932 interfaces/Python/RNA_wrap.cpp:15640:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,933 15640 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2025-12-07T06:10:14,933 | ^~~~~~~ 2025-12-07T06:10:14,935 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2025-12-07T06:10:14,936 interfaces/Python/RNA_wrap.cpp:15726:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,936 15726 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,937 | ^~~~~~~ 2025-12-07T06:10:14,938 interfaces/Python/RNA_wrap.cpp:15731:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2025-12-07T06:10:14,938 15731 | PyObject *py_structure, *py_energy; 2025-12-07T06:10:14,939 | ^~~~~~~~~ 2025-12-07T06:10:14,940 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(unsigned int, unsigned int, const char*, float, void*)’: 2025-12-07T06:10:14,941 interfaces/Python/RNA_wrap.cpp:15825:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,941 15825 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,942 | ^~~~~~~ 2025-12-07T06:10:14,943 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(unsigned int, unsigned int, const char*, float, float, void*)’: 2025-12-07T06:10:14,944 interfaces/Python/RNA_wrap.cpp:15879:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,945 15879 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,945 | ^~~~~~~ 2025-12-07T06:10:14,951 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2025-12-07T06:10:14,952 interfaces/Python/RNA_wrap.cpp:16031:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,953 16031 | PyObject *func, *arglist, *result, *pr_list, *err; 2025-12-07T06:10:14,953 | ^~~~~~~ 2025-12-07T06:10:14,957 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2025-12-07T06:10:14,958 interfaces/Python/RNA_wrap.cpp:16190:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,959 16190 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2025-12-07T06:10:14,959 | ^~~~~~~ 2025-12-07T06:10:14,962 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2025-12-07T06:10:14,962 interfaces/Python/RNA_wrap.cpp:16284:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,963 16284 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2025-12-07T06:10:14,964 | ^~~~~~~ 2025-12-07T06:10:14,967 interfaces/Python/RNA_wrap.cpp: In function ‘int sc_multi_cb_add_pycallback(vrna_fold_compound_t*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, unsigned int)’: 2025-12-07T06:10:14,968 interfaces/Python/RNA_wrap.cpp:16437:23: warning: unused variable ‘func_is_tuple’ [-Wunused-variable] 2025-12-07T06:10:14,968 16437 | unsigned char func_is_tuple, func_is_list; 2025-12-07T06:10:14,969 | ^~~~~~~~~~~~~ 2025-12-07T06:10:14,970 interfaces/Python/RNA_wrap.cpp:16437:38: warning: unused variable ‘func_is_list’ [-Wunused-variable] 2025-12-07T06:10:14,970 16437 | unsigned char func_is_tuple, func_is_list; 2025-12-07T06:10:14,971 | ^~~~~~~~~~~~ 2025-12-07T06:10:14,971 interfaces/Python/RNA_wrap.cpp:16438:23: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-07T06:10:14,972 16438 | unsigned int s; 2025-12-07T06:10:14,973 | ^ 2025-12-07T06:10:14,973 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_direct_f_callback(vrna_fold_compound_t*, int, int, int, int, void*)’: 2025-12-07T06:10:14,974 interfaces/Python/RNA_wrap.cpp:16502:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,975 16502 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,975 | ^~~~~~~ 2025-12-07T06:10:14,976 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_direct_exp_f_callback(vrna_fold_compound_t*, int, int, int, int, void*)’: 2025-12-07T06:10:14,976 interfaces/Python/RNA_wrap.cpp:16577:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,977 16577 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,978 | ^~~~~~~ 2025-12-07T06:10:14,979 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_direct_data_prepare_callback(vrna_fold_compound_t*, void*, unsigned int, void*)’: 2025-12-07T06:10:14,979 interfaces/Python/RNA_wrap.cpp:16649:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-07T06:10:14,980 16649 | PyObject *func, *arglist, *result, *err; 2025-12-07T06:10:14,981 | ^~~~~~~ 2025-12-07T06:10:15,011 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2025-12-07T06:10:15,012 interfaces/Python/RNA_wrap.cpp:17043:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:10:15,013 17043 | if (j < self->length) 2025-12-07T06:10:15,013 | ~~^~~~~~~~~~~~~~ 2025-12-07T06:10:15,024 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector >, std::allocator > > > vrna_fold_compound_t_bpp(vrna_fold_compound_t*, bool)’: 2025-12-07T06:10:15,025 interfaces/Python/RNA_wrap.cpp:17186:11: warning: unused variable ‘turn’ [-Wunused-variable] 2025-12-07T06:10:15,025 17186 | int turn, i, j, *idx, n; 2025-12-07T06:10:15,026 | ^~~~ 2025-12-07T06:10:15,055 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2025-12-07T06:10:15,055 interfaces/Python/RNA_wrap.cpp:17510:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:10:15,056 17510 | int i; 2025-12-07T06:10:15,057 | ^ 2025-12-07T06:10:15,061 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2025-12-07T06:10:15,062 interfaces/Python/RNA_wrap.cpp:17554:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:10:15,063 17554 | int i; 2025-12-07T06:10:15,063 | ^ 2025-12-07T06:10:15,068 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2025-12-07T06:10:15,068 interfaces/Python/RNA_wrap.cpp:17598:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:10:15,069 17598 | int i; 2025-12-07T06:10:15,070 | ^ 2025-12-07T06:10:17,862 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2025-12-07T06:10:17,863 interfaces/Python/RNA_wrap.cpp:61840:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,864 61840 | fail: 2025-12-07T06:10:17,864 | ^~~~ 2025-12-07T06:10:17,865 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2025-12-07T06:10:17,865 interfaces/Python/RNA_wrap.cpp:61860:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,866 61860 | fail: 2025-12-07T06:10:17,866 | ^~~~ 2025-12-07T06:10:17,867 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2025-12-07T06:10:17,868 interfaces/Python/RNA_wrap.cpp:61880:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,868 61880 | fail: 2025-12-07T06:10:17,869 | ^~~~ 2025-12-07T06:10:17,869 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2025-12-07T06:10:17,870 interfaces/Python/RNA_wrap.cpp:61900:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,870 61900 | fail: 2025-12-07T06:10:17,871 | ^~~~ 2025-12-07T06:10:17,872 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2025-12-07T06:10:17,872 interfaces/Python/RNA_wrap.cpp:61920:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,873 61920 | fail: 2025-12-07T06:10:17,873 | ^~~~ 2025-12-07T06:10:17,874 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2025-12-07T06:10:17,875 interfaces/Python/RNA_wrap.cpp:61940:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,875 61940 | fail: 2025-12-07T06:10:17,876 | ^~~~ 2025-12-07T06:10:17,876 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2025-12-07T06:10:17,877 interfaces/Python/RNA_wrap.cpp:61960:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,878 61960 | fail: 2025-12-07T06:10:17,878 | ^~~~ 2025-12-07T06:10:17,879 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2025-12-07T06:10:17,879 interfaces/Python/RNA_wrap.cpp:61980:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,880 61980 | fail: 2025-12-07T06:10:17,881 | ^~~~ 2025-12-07T06:10:17,881 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2025-12-07T06:10:17,882 interfaces/Python/RNA_wrap.cpp:62000:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,882 62000 | fail: 2025-12-07T06:10:17,883 | ^~~~ 2025-12-07T06:10:17,883 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2025-12-07T06:10:17,884 interfaces/Python/RNA_wrap.cpp:62020:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,884 62020 | fail: 2025-12-07T06:10:17,885 | ^~~~ 2025-12-07T06:10:17,885 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2025-12-07T06:10:17,886 interfaces/Python/RNA_wrap.cpp:62040:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,886 62040 | fail: 2025-12-07T06:10:17,887 | ^~~~ 2025-12-07T06:10:17,888 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2025-12-07T06:10:17,888 interfaces/Python/RNA_wrap.cpp:62060:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,889 62060 | fail: 2025-12-07T06:10:17,889 | ^~~~ 2025-12-07T06:10:17,890 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2025-12-07T06:10:17,891 interfaces/Python/RNA_wrap.cpp:62080:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,891 62080 | fail: 2025-12-07T06:10:17,892 | ^~~~ 2025-12-07T06:10:17,892 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_penalty_set(PyObject*)’: 2025-12-07T06:10:17,893 interfaces/Python/RNA_wrap.cpp:62100:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,894 62100 | fail: 2025-12-07T06:10:17,894 | ^~~~ 2025-12-07T06:10:17,895 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2025-12-07T06:10:17,895 interfaces/Python/RNA_wrap.cpp:62120:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,896 62120 | fail: 2025-12-07T06:10:17,896 | ^~~~ 2025-12-07T06:10:17,897 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2025-12-07T06:10:17,898 interfaces/Python/RNA_wrap.cpp:62140:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,898 62140 | fail: 2025-12-07T06:10:17,899 | ^~~~ 2025-12-07T06:10:17,900 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2025-12-07T06:10:17,900 interfaces/Python/RNA_wrap.cpp:62160:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,901 62160 | fail: 2025-12-07T06:10:17,901 | ^~~~ 2025-12-07T06:10:17,902 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2025-12-07T06:10:17,903 interfaces/Python/RNA_wrap.cpp:62180:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,903 62180 | fail: 2025-12-07T06:10:17,904 | ^~~~ 2025-12-07T06:10:17,905 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2025-12-07T06:10:17,905 interfaces/Python/RNA_wrap.cpp:62223:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,906 62223 | fail: 2025-12-07T06:10:17,907 | ^~~~ 2025-12-07T06:10:17,907 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2025-12-07T06:10:17,908 interfaces/Python/RNA_wrap.cpp:62243:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,908 62243 | fail: 2025-12-07T06:10:17,909 | ^~~~ 2025-12-07T06:10:17,910 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2025-12-07T06:10:17,910 interfaces/Python/RNA_wrap.cpp:62263:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,911 62263 | fail: 2025-12-07T06:10:17,912 | ^~~~ 2025-12-07T06:10:17,912 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2025-12-07T06:10:17,913 interfaces/Python/RNA_wrap.cpp:62283:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,913 62283 | fail: 2025-12-07T06:10:17,914 | ^~~~ 2025-12-07T06:10:17,914 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2025-12-07T06:10:17,915 interfaces/Python/RNA_wrap.cpp:62303:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,916 62303 | fail: 2025-12-07T06:10:17,916 | ^~~~ 2025-12-07T06:10:17,917 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2025-12-07T06:10:17,917 interfaces/Python/RNA_wrap.cpp:62346:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,918 62346 | fail: 2025-12-07T06:10:17,918 | ^~~~ 2025-12-07T06:10:17,919 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2025-12-07T06:10:17,919 interfaces/Python/RNA_wrap.cpp:62366:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,920 62366 | fail: 2025-12-07T06:10:17,920 | ^~~~ 2025-12-07T06:10:17,921 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2025-12-07T06:10:17,922 interfaces/Python/RNA_wrap.cpp:62386:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,922 62386 | fail: 2025-12-07T06:10:17,923 | ^~~~ 2025-12-07T06:10:17,923 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2025-12-07T06:10:17,924 interfaces/Python/RNA_wrap.cpp:62406:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,924 62406 | fail: 2025-12-07T06:10:17,925 | ^~~~ 2025-12-07T06:10:17,926 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2025-12-07T06:10:17,926 interfaces/Python/RNA_wrap.cpp:62426:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,927 62426 | fail: 2025-12-07T06:10:17,928 | ^~~~ 2025-12-07T06:10:17,929 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2025-12-07T06:10:17,930 interfaces/Python/RNA_wrap.cpp:62446:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,931 62446 | fail: 2025-12-07T06:10:17,932 | ^~~~ 2025-12-07T06:10:17,933 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2025-12-07T06:10:17,933 interfaces/Python/RNA_wrap.cpp:62466:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:17,934 62466 | fail: 2025-12-07T06:10:17,935 | ^~~~ 2025-12-07T06:10:19,311 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_symbolset_set(PyObject*)’: 2025-12-07T06:10:19,312 interfaces/Python/RNA_wrap.cpp:84000:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-07T06:10:19,313 84000 | fail: 2025-12-07T06:10:19,314 | ^~~~ 2025-12-07T06:10:20,301 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:10:20,302 interfaces/Python/RNA_wrap.cpp:99735:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-07T06:10:20,303 99735 | PyObject *o, *o2, *o3; 2025-12-07T06:10:20,303 | ^~ 2025-12-07T06:10:20,307 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:10:20,307 interfaces/Python/RNA_wrap.cpp:99818:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-07T06:10:20,308 99818 | PyObject *o, *o2, *o3; 2025-12-07T06:10:20,308 | ^~ 2025-12-07T06:10:20,313 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:10:20,313 interfaces/Python/RNA_wrap.cpp:99909:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-07T06:10:20,314 99909 | PyObject *o, *o2, *o3; 2025-12-07T06:10:20,314 | ^~ 2025-12-07T06:10:20,453 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:10:20,453 interfaces/Python/RNA_wrap.cpp:102228:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-07T06:10:20,454 102228 | PyObject *o, *o2, *o3; 2025-12-07T06:10:20,455 | ^~ 2025-12-07T06:10:20,465 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:10:20,465 interfaces/Python/RNA_wrap.cpp:102474:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-07T06:10:20,466 102474 | PyObject *o, *o2, *o3; 2025-12-07T06:10:20,467 | ^~ 2025-12-07T06:10:20,479 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:10:20,479 interfaces/Python/RNA_wrap.cpp:102758:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-07T06:10:20,480 102758 | PyObject *o, *o2, *o3; 2025-12-07T06:10:20,481 | ^~ 2025-12-07T06:10:20,834 interfaces/Python/RNA_wrap.cpp: In function ‘void SWIG_PropagateClientData()’: 2025-12-07T06:10:20,834 interfaces/Python/RNA_wrap.cpp:116615:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:10:20,835 116615 | for (cast = head; (cast - head) <= head->value; cast++) { 2025-12-07T06:10:20,836 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2025-12-07T06:10:24,110 interfaces/Python/RNA_wrap.cpp: At global scope: 2025-12-07T06:10:24,121 interfaces/Python/RNA_wrap.cpp:11368:1: warning: ‘double python_wrap_probing_data_trans_cb(double, vrna_math_fun_dbl_opt_t)’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:10:24,121 11368 | python_wrap_probing_data_trans_cb(double reactivity, 2025-12-07T06:10:24,122 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:11:03,038 In file included from /usr/include/c++/12/vector:70, 2025-12-07T06:11:03,039 from interfaces/Python/RNA_wrap.cpp:4855: 2025-12-07T06:11:03,040 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-07T06:11:03,040 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:11:03,041 739 | vector<_Tp, _Alloc>:: 2025-12-07T06:11:03,042 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:11:03,042 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:11:03,043 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:11:04,688 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2025-12-07T06:11:04,688 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:11:04,689 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:11:04,690 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:11:06,780 interfaces/Python/RNA_wrap.cpp: In function ‘double python_wrap_probing_data_cb(double, vrna_math_fun_dbl_opt_t)’: 2025-12-07T06:11:06,781 interfaces/Python/RNA_wrap.cpp:11488:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:11:06,781 11488 | return ret; 2025-12-07T06:11:06,782 | ^~~ 2025-12-07T06:11:06,782 interfaces/Python/RNA_wrap.cpp:11451:10: note: ‘ret’ was declared here 2025-12-07T06:11:06,783 11451 | double ret; 2025-12-07T06:11:06,783 | ^~~ 2025-12-07T06:11:37,920 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:11:37,920 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:11:37,921 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-07T06:11:37,922 | ^ 2025-12-07T06:11:37,931 interfaces/Python/RNA_wrap.cpp:102175:26: note: ‘retval5’ was declared here 2025-12-07T06:11:37,931 102175 | vrna_pbacktrack_mem_t *retval5 ; 2025-12-07T06:11:37,932 | ^~~~~~~ 2025-12-07T06:11:38,034 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:11:38,035 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval6’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:11:38,036 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-07T06:11:38,036 | ^ 2025-12-07T06:11:38,045 interfaces/Python/RNA_wrap.cpp:102416:26: note: ‘retval6’ was declared here 2025-12-07T06:11:38,046 102416 | vrna_pbacktrack_mem_t *retval6 ; 2025-12-07T06:11:38,047 | ^~~~~~~ 2025-12-07T06:11:38,161 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:11:38,162 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval7’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:11:38,162 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-07T06:11:38,163 | ^ 2025-12-07T06:11:38,172 interfaces/Python/RNA_wrap.cpp:102695:26: note: ‘retval7’ was declared here 2025-12-07T06:11:38,173 102695 | vrna_pbacktrack_mem_t *retval7 ; 2025-12-07T06:11:38,173 | ^~~~~~~ 2025-12-07T06:11:56,177 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-07T06:11:56,177 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:11:56,178 739 | vector<_Tp, _Alloc>:: 2025-12-07T06:11:56,179 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:11:56,179 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:11:56,180 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:20,856 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_move_neighbor_diff__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:12:20,857 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘temp4’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:12:20,857 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-07T06:12:20,858 | ^ 2025-12-07T06:12:20,867 interfaces/Python/RNA_wrap.cpp:100517:29: note: ‘temp4’ was declared here 2025-12-07T06:12:20,868 100517 | var_array< vrna_move_t > *temp4 ; 2025-12-07T06:12:20,868 | ^~~~~ 2025-12-07T06:12:25,119 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-12-07T06:12:25,120 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,121 439 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:25,122 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,163 In file included from /usr/include/c++/12/vector:64: 2025-12-07T06:12:25,163 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,164 inlined from ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28783:24: 2025-12-07T06:12:25,165 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,166 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:25,166 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:25,224 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,224 inlined from ‘std::vector > my_equilibrium_constants(std::vector >, std::vector >, std::vector >, std::allocator > > >, double, size_t, size_t)’ at interfaces/Python/RNA_wrap.cpp:13605:33: 2025-12-07T06:12:25,225 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,226 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:25,226 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:25,300 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,301 inlined from ‘std::vector > my_equilibrium_conc(std::vector >, std::vector >, std::vector >, std::allocator > > >, size_t, size_t)’ at interfaces/Python/RNA_wrap.cpp:13650:31: 2025-12-07T06:12:25,301 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,302 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:25,302 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:25,303 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,304 inlined from ‘std::vector > my_equilibrium_conc(std::vector >, std::vector >, std::vector >, std::allocator > > >, size_t, size_t)’ at interfaces/Python/RNA_wrap.cpp:13654:31: 2025-12-07T06:12:25,304 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,305 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:25,305 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:25,400 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,400 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5799:30: 2025-12-07T06:12:25,401 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,402 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:25,402 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:25,403 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,404 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5814:28: 2025-12-07T06:12:25,404 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,405 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:25,406 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:25,476 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,477 inlined from ‘void std_vector_Sl_double_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6552:22, 2025-12-07T06:12:25,478 inlined from ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28064:38: 2025-12-07T06:12:25,479 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,479 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:25,480 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:25,517 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]’: 2025-12-07T06:12:25,518 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,518 175 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:25,519 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,531 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: 2025-12-07T06:12:25,532 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,533 189 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:25,533 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,534 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,574 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,575 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20: 2025-12-07T06:12:25,575 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,576 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:25,576 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,577 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,578 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5903:27: 2025-12-07T06:12:25,578 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,579 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:12:25,580 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,581 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,581 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5915:33: 2025-12-07T06:12:25,582 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,583 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:12:25,583 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,685 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,685 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-07T06:12:25,686 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5839:23: 2025-12-07T06:12:25,686 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,687 1779 | _M_range_insert(__pos, __first, __last, 2025-12-07T06:12:25,687 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,688 1780 | std::__iterator_category(__first)); 2025-12-07T06:12:25,688 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,689 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,690 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,690 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5846:22: 2025-12-07T06:12:25,691 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,692 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:25,692 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,693 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,694 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-07T06:12:25,694 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5849:23: 2025-12-07T06:12:25,695 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,696 1779 | _M_range_insert(__pos, __first, __last, 2025-12-07T06:12:25,697 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,697 1780 | std::__iterator_category(__first)); 2025-12-07T06:12:25,698 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,698 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,789 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:25,790 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20, 2025-12-07T06:12:25,791 inlined from ‘void std_vector_Sl_double_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6489:21, 2025-12-07T06:12:25,791 inlined from ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:27515:46: 2025-12-07T06:12:25,792 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:25,792 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:25,793 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,841 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2025-12-07T06:12:25,842 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,843 407 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:25,844 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:25,902 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-12-07T06:12:25,903 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:25,904 523 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:25,905 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:34,602 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-07T06:12:34,602 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:34,603 439 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:34,604 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:34,646 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,647 inlined from ‘std::vector > my_get_path(std::string, std::string, std::string, int)’ at interfaces/Python/RNA_wrap.cpp:13816:20: 2025-12-07T06:12:34,647 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,648 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:34,649 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:34,716 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,717 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5799:30: 2025-12-07T06:12:34,718 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,718 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:34,719 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:34,720 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,720 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5814:28: 2025-12-07T06:12:34,721 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,721 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:34,722 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:34,798 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,799 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7654:22, 2025-12-07T06:12:34,799 inlined from ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:47665:43: 2025-12-07T06:12:34,800 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,800 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:34,801 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:34,849 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,850 inlined from ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48384:24: 2025-12-07T06:12:34,851 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,851 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:34,852 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:34,894 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-07T06:12:34,895 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:34,896 175 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:34,897 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:34,909 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-07T06:12:34,910 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:34,911 189 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:34,911 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:34,912 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:34,952 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,952 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20: 2025-12-07T06:12:34,953 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,954 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:34,954 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:34,955 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,955 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5903:27: 2025-12-07T06:12:34,956 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,957 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:12:34,958 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:34,958 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:34,959 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5915:33: 2025-12-07T06:12:34,960 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:34,961 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:12:34,961 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,062 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:35,063 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-07T06:12:35,064 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5839:23: 2025-12-07T06:12:35,065 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:35,066 1779 | _M_range_insert(__pos, __first, __last, 2025-12-07T06:12:35,066 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,067 1780 | std::__iterator_category(__first)); 2025-12-07T06:12:35,068 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,068 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:35,069 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:35,069 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5846:22: 2025-12-07T06:12:35,070 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:35,071 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:35,071 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,072 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:35,072 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-07T06:12:35,073 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5849:23: 2025-12-07T06:12:35,074 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:35,074 1779 | _M_range_insert(__pos, __first, __last, 2025-12-07T06:12:35,075 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,076 1780 | std::__iterator_category(__first)); 2025-12-07T06:12:35,077 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,078 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:35,173 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:35,174 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20, 2025-12-07T06:12:35,174 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:7591:21, 2025-12-07T06:12:35,175 inlined from ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:47116:51: 2025-12-07T06:12:35,175 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:35,176 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:35,177 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,224 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-07T06:12:35,225 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:35,226 407 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:35,226 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:35,290 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-07T06:12:35,291 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:35,291 523 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:35,292 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:37,293 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const duplex_list_t&}; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-07T06:12:37,294 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:37,295 439 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:37,295 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:37,402 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,402 inlined from ‘void std_vector_Sl_duplex_list_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:13456:22, 2025-12-07T06:12:37,403 inlined from ‘PyObject* _wrap_DuplexVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87753:45: 2025-12-07T06:12:37,404 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,405 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:37,405 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:37,478 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,479 inlined from ‘std::vector > my_duplex_subopt(std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:13486:20: 2025-12-07T06:12:37,480 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,480 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:37,481 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:37,606 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,607 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5799:30: 2025-12-07T06:12:37,607 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,608 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:37,609 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:37,609 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,610 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5814:28: 2025-12-07T06:12:37,611 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,611 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:37,612 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:37,753 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,753 inlined from ‘PyObject* _wrap_DuplexVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88472:24: 2025-12-07T06:12:37,754 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,755 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:37,755 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:37,834 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-07T06:12:37,835 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:37,836 175 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:37,837 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:37,906 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-07T06:12:37,907 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:37,907 189 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:37,908 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:37,909 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:37,981 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,981 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20: 2025-12-07T06:12:37,982 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,983 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:37,983 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:37,984 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,984 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5903:27: 2025-12-07T06:12:37,985 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,986 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:12:37,986 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:37,987 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:37,988 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5915:33: 2025-12-07T06:12:37,988 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:37,989 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:12:37,990 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:38,109 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:38,110 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-07T06:12:38,111 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5839:23: 2025-12-07T06:12:38,112 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:38,113 1779 | _M_range_insert(__pos, __first, __last, 2025-12-07T06:12:38,113 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:38,114 1780 | std::__iterator_category(__first)); 2025-12-07T06:12:38,114 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:38,115 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:38,115 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:38,116 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5846:22: 2025-12-07T06:12:38,116 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:38,117 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:38,118 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:38,118 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:38,119 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-07T06:12:38,120 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5849:23: 2025-12-07T06:12:38,120 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:38,121 1779 | _M_range_insert(__pos, __first, __last, 2025-12-07T06:12:38,122 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:38,122 1780 | std::__iterator_category(__first)); 2025-12-07T06:12:38,123 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:38,124 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:38,241 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:38,242 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20, 2025-12-07T06:12:38,242 inlined from ‘void std_vector_Sl_duplex_list_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:13393:21, 2025-12-07T06:12:38,243 inlined from ‘PyObject* _wrap_DuplexVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87204:53: 2025-12-07T06:12:38,243 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:38,244 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:12:38,244 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:38,332 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = duplex_list_t; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-07T06:12:38,333 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:38,334 407 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:38,334 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:43,588 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:12:43,588 inlined from ‘std::vector > my_aliduplex_subopt(std::vector, std::allocator > >, std::vector, std::allocator > >, int, int)’ at interfaces/Python/RNA_wrap.cpp:13530:20: 2025-12-07T06:12:43,589 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:43,590 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:43,591 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:43,875 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-12-07T06:12:43,876 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:12:43,876 439 | vector<_Tp, _Alloc>:: 2025-12-07T06:12:43,877 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:43,916 In file included from /usr/include/c++/12/algorithm:61, 2025-12-07T06:12:43,917 from interfaces/Python/RNA_wrap.cpp:4852: 2025-12-07T06:12:43,918 /usr/include/c++/12/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2025-12-07T06:12:43,919 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:43,919 4252 | transform(_InputIterator __first, _InputIterator __last, 2025-12-07T06:12:43,920 | ^~~~~~~~~ 2025-12-07T06:12:43,920 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:43,921 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:43,922 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-07T06:12:43,922 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2025-12-07T06:12:43,923 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12: 2025-12-07T06:12:43,923 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:43,924 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-07T06:12:43,925 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:43,991 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:43,992 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-07T06:12:43,993 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:12686:20: 2025-12-07T06:12:43,994 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:43,994 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-07T06:12:43,995 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:43,996 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:43,996 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:12690:22: 2025-12-07T06:12:43,997 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:43,998 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:43,999 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:44,327 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:44,328 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-07T06:12:44,329 inlined from ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:10348:31: 2025-12-07T06:12:44,329 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:44,330 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-07T06:12:44,330 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:44,380 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:44,380 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-07T06:12:44,381 inlined from ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’ at interfaces/Python/RNA_wrap.cpp:10325:31: 2025-12-07T06:12:44,382 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:44,382 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-07T06:12:44,383 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:45,027 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:45,027 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-07T06:12:45,028 inlined from ‘vrna_probing_data_s* probing_data_zarringhalam_comparative(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:11801:28: 2025-12-07T06:12:45,029 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:45,029 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-07T06:12:45,030 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:45,213 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:12:45,214 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval3’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:12:45,215 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-07T06:12:45,215 | ^ 2025-12-07T06:12:45,224 interfaces/Python/RNA_wrap.cpp:99692:26: note: ‘retval3’ was declared here 2025-12-07T06:12:45,224 99692 | vrna_pbacktrack_mem_t *retval3 ; 2025-12-07T06:12:45,225 | ^~~~~~~ 2025-12-07T06:12:45,840 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:12:45,841 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval4’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:12:45,841 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-07T06:12:45,842 | ^ 2025-12-07T06:12:45,849 interfaces/Python/RNA_wrap.cpp:99770:26: note: ‘retval4’ was declared here 2025-12-07T06:12:45,850 99770 | vrna_pbacktrack_mem_t *retval4 ; 2025-12-07T06:12:45,851 | ^~~~~~~ 2025-12-07T06:12:46,541 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-07T06:12:46,541 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:12:46,542 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-07T06:12:46,542 | ^ 2025-12-07T06:12:46,551 interfaces/Python/RNA_wrap.cpp:99856:26: note: ‘retval5’ was declared here 2025-12-07T06:12:46,552 99856 | vrna_pbacktrack_mem_t *retval5 ; 2025-12-07T06:12:46,552 | ^~~~~~~ 2025-12-07T06:12:49,443 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:49,443 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:17661:24, 2025-12-07T06:12:49,444 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:101383:48: 2025-12-07T06:12:49,445 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:49,446 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:49,446 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:49,447 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:49,448 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:17670:24, 2025-12-07T06:12:49,448 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:101383:48: 2025-12-07T06:12:49,449 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:49,450 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:49,451 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:49,728 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:12:49,728 inlined from ‘std::vector > vrna_fold_compound_t_path_findpath(vrna_fold_compound_t*, std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:17641:24, 2025-12-07T06:12:49,729 inlined from ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:101307:50: 2025-12-07T06:12:49,729 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:49,730 1287 | _M_realloc_insert(end(), __x); 2025-12-07T06:12:49,730 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:12:58,760 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:12:58,760 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2025-12-07T06:12:58,761 inlined from ‘static void swig::IteratorProtocol::assign(PyObject*, Seq*) [with Seq = std::vector >; T = double]’ at interfaces/Python/RNA_wrap.cpp:5933:22: 2025-12-07T06:12:58,762 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:58,762 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2025-12-07T06:12:58,763 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:58,763 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:58,764 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2025-12-07T06:12:58,765 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:12:59,369 In function ‘int vrna_fold_compound_t_sc_set_up(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2025-12-07T06:12:59,370 inlined from ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:95055:51: 2025-12-07T06:12:59,370 interfaces/Python/RNA_wrap.cpp:16854:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:12:59,371 16854 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2025-12-07T06:12:59,372 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,034 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:13:01,037 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6554:167, 2025-12-07T06:13:01,039 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:28539:54, 2025-12-07T06:13:01,039 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28626:48: 2025-12-07T06:13:01,040 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,041 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:13:01,042 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,042 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:13:01,043 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6555:206, 2025-12-07T06:13:01,043 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:28596:54, 2025-12-07T06:13:01,044 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28643:50: 2025-12-07T06:13:01,044 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,045 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:13:01,045 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,340 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:13:01,341 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5769:15, 2025-12-07T06:13:01,341 inlined from ‘void std_vector_Sl_double_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6492:18, 2025-12-07T06:13:01,342 inlined from ‘PyObject* _wrap_DoubleVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:27556:53, 2025-12-07T06:13:01,342 inlined from ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:27780:54: 2025-12-07T06:13:01,343 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,344 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:13:01,344 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,490 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:13:01,491 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6556:212, 2025-12-07T06:13:01,491 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:29049:55, 2025-12-07T06:13:01,492 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:29143:51: 2025-12-07T06:13:01,493 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,494 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2025-12-07T06:13:01,494 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,495 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,495 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2025-12-07T06:13:01,496 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,496 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:13:01,497 inlined from ‘void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6557:213, 2025-12-07T06:13:01,497 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:29109:46, 2025-12-07T06:13:01,498 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:29167:53: 2025-12-07T06:13:01,499 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,499 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2025-12-07T06:13:01,500 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,682 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:13:01,683 inlined from ‘PyObject* _wrap_DoubleVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:28945:21, 2025-12-07T06:13:01,684 inlined from ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28994:51: 2025-12-07T06:13:01,684 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,685 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-12-07T06:13:01,686 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:01,815 In function ‘int vrna_fold_compound_t_sc_add_stack__SWIG_1(vrna_fold_compound_t*, std::vector >, std::vector >, unsigned int)’, 2025-12-07T06:13:01,816 inlined from ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:95325:62: 2025-12-07T06:13:01,817 interfaces/Python/RNA_wrap.cpp:16891:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:01,818 16891 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2025-12-07T06:13:01,818 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:02,001 In function ‘int vrna_fold_compound_t_sc_set_stack__SWIG_0(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2025-12-07T06:13:02,002 inlined from ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:95103:62: 2025-12-07T06:13:02,003 interfaces/Python/RNA_wrap.cpp:16859:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:02,003 16859 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2025-12-07T06:13:02,004 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:18,978 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-07T06:13:18,979 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-07T06:13:18,980 inlined from ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_5(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >)’ at interfaces/Python/RNA_wrap.cpp:11602:28, 2025-12-07T06:13:18,980 inlined from ‘PyObject* _wrap_new_probing_data__SWIG_5(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:72190:70: 2025-12-07T06:13:18,981 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:18,982 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-07T06:13:18,982 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:22,331 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:13:22,332 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2025-12-07T06:13:22,333 inlined from ‘static void swig::IteratorProtocol::assign(PyObject*, Seq*) [with Seq = std::vector >; T = duplex_list_t]’ at interfaces/Python/RNA_wrap.cpp:5933:22: 2025-12-07T06:13:22,334 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:22,334 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2025-12-07T06:13:22,335 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:22,785 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:13:22,786 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:13458:195, 2025-12-07T06:13:22,787 inlined from ‘PyObject* _wrap_DuplexVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88228:61, 2025-12-07T06:13:22,788 inlined from ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88315:48: 2025-12-07T06:13:22,789 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:22,789 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:13:22,790 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:22,790 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:13:22,791 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:13459:241, 2025-12-07T06:13:22,791 inlined from ‘PyObject* _wrap_DuplexVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88285:61, 2025-12-07T06:13:22,792 inlined from ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88332:50: 2025-12-07T06:13:22,792 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:22,793 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:13:22,794 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:23,103 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:13:23,104 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5769:15, 2025-12-07T06:13:23,104 inlined from ‘void std_vector_Sl_duplex_list_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:13396:18, 2025-12-07T06:13:23,105 inlined from ‘PyObject* _wrap_DuplexVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:87245:60, 2025-12-07T06:13:23,106 inlined from ‘PyObject* _wrap_DuplexVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87469:54: 2025-12-07T06:13:23,106 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:23,107 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:13:23,108 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:35,681 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-07T06:13:35,681 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:13:35,682 523 | vector<_Tp, _Alloc>:: 2025-12-07T06:13:35,682 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:35,950 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:13:35,951 inlined from ‘PyObject* _wrap_DuplexVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88636:21, 2025-12-07T06:13:35,952 inlined from ‘PyObject* _wrap_DuplexVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88683:51: 2025-12-07T06:13:35,952 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:35,953 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-12-07T06:13:35,953 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:36,133 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:13:36,133 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:13460:247, 2025-12-07T06:13:36,134 inlined from ‘PyObject* _wrap_DuplexVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88739:62, 2025-12-07T06:13:36,134 inlined from ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88832:51: 2025-12-07T06:13:36,135 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:36,136 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2025-12-07T06:13:36,137 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:36,137 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:36,138 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2025-12-07T06:13:36,139 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:36,139 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-07T06:13:36,140 inlined from ‘void std_vector_Sl_duplex_list_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:13461:248, 2025-12-07T06:13:36,141 inlined from ‘PyObject* _wrap_DuplexVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88800:53, 2025-12-07T06:13:36,141 inlined from ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88854:53: 2025-12-07T06:13:36,142 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:36,143 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2025-12-07T06:13:36,143 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,279 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-07T06:13:45,280 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-07T06:13:45,281 439 | vector<_Tp, _Alloc>:: 2025-12-07T06:13:45,282 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,358 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:13:45,359 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2025-12-07T06:13:45,359 inlined from ‘static void swig::IteratorProtocol::assign(PyObject*, Seq*) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5933:22, 2025-12-07T06:13:45,360 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5978:45: 2025-12-07T06:13:45,361 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,361 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2025-12-07T06:13:45,362 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,363 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,363 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2025-12-07T06:13:45,364 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,518 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:13:45,519 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7658:237, 2025-12-07T06:13:45,520 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48651:60, 2025-12-07T06:13:45,520 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48744:49: 2025-12-07T06:13:45,521 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,522 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2025-12-07T06:13:45,522 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,523 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,524 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2025-12-07T06:13:45,525 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,525 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:13:45,526 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7659:238, 2025-12-07T06:13:45,526 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48712:51, 2025-12-07T06:13:45,527 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48766:51: 2025-12-07T06:13:45,527 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,528 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2025-12-07T06:13:45,529 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,727 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:13:45,728 inlined from ‘PyObject* _wrap_PathVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48548:21, 2025-12-07T06:13:45,729 inlined from ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48595:49: 2025-12-07T06:13:45,730 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,730 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-12-07T06:13:45,731 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,861 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:13:45,861 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:7656:187, 2025-12-07T06:13:45,862 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48140:59, 2025-12-07T06:13:45,863 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48227:46: 2025-12-07T06:13:45,863 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,864 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:13:45,865 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:45,866 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:13:45,866 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:7657:231, 2025-12-07T06:13:45,867 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48197:59, 2025-12-07T06:13:45,868 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48244:48: 2025-12-07T06:13:45,869 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:45,869 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-07T06:13:45,870 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:13:46,172 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-07T06:13:46,173 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5769:15, 2025-12-07T06:13:46,173 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:7594:18, 2025-12-07T06:13:46,174 inlined from ‘PyObject* _wrap_PathVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:47157:58, 2025-12-07T06:13:46,175 inlined from ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:47381:52: 2025-12-07T06:13:46,175 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-07T06:13:46,176 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-07T06:13:46,177 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:14:10,929 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dfold.o -fopenmp 2025-12-07T06:14:11,193 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2025-12-07T06:14:11,194 src/ViennaRNA/2Dfold.c:329:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,195 329 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2025-12-07T06:14:11,195 | ^~ 2025-12-07T06:14:11,196 src/ViennaRNA/2Dfold.c:330:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,197 330 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2025-12-07T06:14:11,197 | ^~ 2025-12-07T06:14:11,198 src/ViennaRNA/2Dfold.c:332:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,199 332 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2025-12-07T06:14:11,200 | ^~ 2025-12-07T06:14:11,201 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2025-12-07T06:14:11,202 src/ViennaRNA/2Dfold.c:404:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,202 404 | if (j < vc->params->model_details.min_loop_size + 2) 2025-12-07T06:14:11,203 | ^ 2025-12-07T06:14:11,207 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2025-12-07T06:14:11,208 src/ViennaRNA/2Dfold.c:600:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,209 600 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2025-12-07T06:14:11,209 | ^~ 2025-12-07T06:14:11,210 src/ViennaRNA/2Dfold.c:600:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,210 600 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2025-12-07T06:14:11,211 | ^~ 2025-12-07T06:14:11,215 src/ViennaRNA/2Dfold.c:716:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,216 716 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2025-12-07T06:14:11,216 | ^~ 2025-12-07T06:14:11,217 src/ViennaRNA/2Dfold.c:716:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,217 716 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2025-12-07T06:14:11,218 | ^~ 2025-12-07T06:14:11,227 src/ViennaRNA/2Dfold.c:1036:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,228 1036 | if (j > turn + 2) { 2025-12-07T06:14:11,228 | ^ 2025-12-07T06:14:11,244 src/ViennaRNA/2Dfold.c:1406:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,245 1406 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2025-12-07T06:14:11,246 | ^~ 2025-12-07T06:14:11,253 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2025-12-07T06:14:11,255 src/ViennaRNA/2Dfold.c:1626:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,256 1626 | if (j < turn + 2) 2025-12-07T06:14:11,256 | ^ 2025-12-07T06:14:11,259 src/ViennaRNA/2Dfold.c:1652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,260 1652 | } else if ((k >= da) && (l >= db)) { 2025-12-07T06:14:11,260 | ^~ 2025-12-07T06:14:11,262 src/ViennaRNA/2Dfold.c:1652:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,262 1652 | } else if ((k >= da) && (l >= db)) { 2025-12-07T06:14:11,263 | ^~ 2025-12-07T06:14:11,265 src/ViennaRNA/2Dfold.c:1654:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,265 1654 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2025-12-07T06:14:11,266 | ^~ 2025-12-07T06:14:11,267 src/ViennaRNA/2Dfold.c:1654:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,268 1654 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2025-12-07T06:14:11,268 | ^~ 2025-12-07T06:14:11,269 src/ViennaRNA/2Dfold.c:1655:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,269 1655 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2025-12-07T06:14:11,270 | ^~ 2025-12-07T06:14:11,270 src/ViennaRNA/2Dfold.c:1655:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,271 1655 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2025-12-07T06:14:11,272 | ^~ 2025-12-07T06:14:11,276 src/ViennaRNA/2Dfold.c:1760:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,277 1760 | } else if ((k >= d1a) && (l >= d1b)) { 2025-12-07T06:14:11,277 | ^~ 2025-12-07T06:14:11,278 src/ViennaRNA/2Dfold.c:1760:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,278 1760 | } else if ((k >= d1a) && (l >= d1b)) { 2025-12-07T06:14:11,279 | ^~ 2025-12-07T06:14:11,280 In file included from src/ViennaRNA/2Dfold.c:17: 2025-12-07T06:14:11,280 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,281 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,282 | ^ 2025-12-07T06:14:11,282 src/ViennaRNA/2Dfold.c:1761:23: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,283 1761 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2025-12-07T06:14:11,284 | ^~~~ 2025-12-07T06:14:11,284 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,285 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,286 | ^~~ 2025-12-07T06:14:11,286 src/ViennaRNA/2Dfold.c:1761:23: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,287 1761 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2025-12-07T06:14:11,288 | ^~~~ 2025-12-07T06:14:11,288 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,289 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,289 | ^ 2025-12-07T06:14:11,290 src/ViennaRNA/2Dfold.c:1764:25: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,290 1764 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2025-12-07T06:14:11,291 | ^~~~ 2025-12-07T06:14:11,292 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,292 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,293 | ^~~ 2025-12-07T06:14:11,294 src/ViennaRNA/2Dfold.c:1764:25: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,294 1764 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2025-12-07T06:14:11,295 | ^~~~ 2025-12-07T06:14:11,295 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2025-12-07T06:14:11,296 src/ViennaRNA/2Dfold.c:1868:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,296 1868 | if ((unsigned int)base_d1 == k) 2025-12-07T06:14:11,297 | ^~ 2025-12-07T06:14:11,297 src/ViennaRNA/2Dfold.c:1869:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,297 1869 | if ((unsigned int)base_d2 == l) 2025-12-07T06:14:11,298 | ^~ 2025-12-07T06:14:11,299 src/ViennaRNA/2Dfold.c:1914:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,299 1914 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2025-12-07T06:14:11,300 | ^ 2025-12-07T06:14:11,300 src/ViennaRNA/2Dfold.c:1914:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,301 1914 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2025-12-07T06:14:11,301 | ^ 2025-12-07T06:14:11,303 src/ViennaRNA/2Dfold.c:2022:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,303 2022 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2025-12-07T06:14:11,304 | ^ 2025-12-07T06:14:11,305 src/ViennaRNA/2Dfold.c:2022:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,305 2022 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2025-12-07T06:14:11,306 | ^ 2025-12-07T06:14:11,315 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2025-12-07T06:14:11,317 src/ViennaRNA/2Dfold.c:2297:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,317 2297 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,318 | ^~ 2025-12-07T06:14:11,319 src/ViennaRNA/2Dfold.c:2297:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,319 2297 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,320 | ^~ 2025-12-07T06:14:11,321 src/ViennaRNA/2Dfold.c:2298:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,321 2298 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2025-12-07T06:14:11,322 | ^~ 2025-12-07T06:14:11,323 src/ViennaRNA/2Dfold.c:2298:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,324 2298 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2025-12-07T06:14:11,324 | ^~ 2025-12-07T06:14:11,325 src/ViennaRNA/2Dfold.c:2299:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,326 2299 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2025-12-07T06:14:11,326 | ^~ 2025-12-07T06:14:11,327 src/ViennaRNA/2Dfold.c:2300:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,328 2300 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2025-12-07T06:14:11,328 | ^~ 2025-12-07T06:14:11,330 src/ViennaRNA/2Dfold.c:2314:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,330 2314 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,331 | ^~ 2025-12-07T06:14:11,332 src/ViennaRNA/2Dfold.c:2314:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,332 2314 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,333 | ^~ 2025-12-07T06:14:11,334 src/ViennaRNA/2Dfold.c:2315:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,334 2315 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2025-12-07T06:14:11,335 | ^~ 2025-12-07T06:14:11,336 src/ViennaRNA/2Dfold.c:2315:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,337 2315 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2025-12-07T06:14:11,337 | ^~ 2025-12-07T06:14:11,338 src/ViennaRNA/2Dfold.c:2316:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,339 2316 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2025-12-07T06:14:11,339 | ^~ 2025-12-07T06:14:11,340 src/ViennaRNA/2Dfold.c:2316:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,341 2316 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2025-12-07T06:14:11,342 | ^~ 2025-12-07T06:14:11,346 src/ViennaRNA/2Dfold.c:2368:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,346 2368 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,347 | ^~ 2025-12-07T06:14:11,348 src/ViennaRNA/2Dfold.c:2368:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,349 2368 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,349 | ^~ 2025-12-07T06:14:11,350 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,351 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,351 | ^ 2025-12-07T06:14:11,352 src/ViennaRNA/2Dfold.c:2369:55: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,352 2369 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2025-12-07T06:14:11,353 | ^~~~ 2025-12-07T06:14:11,353 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,354 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,355 | ^~~ 2025-12-07T06:14:11,355 src/ViennaRNA/2Dfold.c:2369:55: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,356 2369 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2025-12-07T06:14:11,357 | ^~~~ 2025-12-07T06:14:11,357 src/ViennaRNA/2Dfold.c:2369:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,358 2369 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2025-12-07T06:14:11,358 | ^~ 2025-12-07T06:14:11,358 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,359 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,359 | ^ 2025-12-07T06:14:11,360 src/ViennaRNA/2Dfold.c:2372:24: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,360 2372 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2025-12-07T06:14:11,360 | ^~~~ 2025-12-07T06:14:11,361 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,361 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,362 | ^~~ 2025-12-07T06:14:11,362 src/ViennaRNA/2Dfold.c:2372:24: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,363 2372 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2025-12-07T06:14:11,363 | ^~~~ 2025-12-07T06:14:11,364 src/ViennaRNA/2Dfold.c:2372:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,365 2372 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2025-12-07T06:14:11,365 | ^~ 2025-12-07T06:14:11,366 src/ViennaRNA/2Dfold.c:2373:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,367 2373 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2025-12-07T06:14:11,367 | ^~ 2025-12-07T06:14:11,368 src/ViennaRNA/2Dfold.c:2374:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,369 2374 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2025-12-07T06:14:11,369 | ^~ 2025-12-07T06:14:11,369 src/ViennaRNA/2Dfold.c:2375:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,370 2375 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2025-12-07T06:14:11,371 | ^~ 2025-12-07T06:14:11,371 src/ViennaRNA/2Dfold.c:2376:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,372 2376 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2025-12-07T06:14:11,373 | ^~ 2025-12-07T06:14:11,374 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2025-12-07T06:14:11,376 src/ViennaRNA/2Dfold.c:2496:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,376 2496 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,377 | ^~ 2025-12-07T06:14:11,378 src/ViennaRNA/2Dfold.c:2496:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,379 2496 | if (d1 <= k && d2 <= l) { 2025-12-07T06:14:11,379 | ^~ 2025-12-07T06:14:11,380 src/ViennaRNA/2Dfold.c:2497:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,381 2497 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2025-12-07T06:14:11,381 | ^~ 2025-12-07T06:14:11,382 src/ViennaRNA/2Dfold.c:2497:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,383 2497 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2025-12-07T06:14:11,383 | ^~ 2025-12-07T06:14:11,385 src/ViennaRNA/2Dfold.c:2498:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,385 2498 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2025-12-07T06:14:11,386 | ^~ 2025-12-07T06:14:11,387 src/ViennaRNA/2Dfold.c:2498:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,388 2498 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2025-12-07T06:14:11,388 | ^~ 2025-12-07T06:14:11,391 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2025-12-07T06:14:11,393 src/ViennaRNA/2Dfold.c:2618:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,393 2618 | if (u < turn) 2025-12-07T06:14:11,394 | ^ 2025-12-07T06:14:11,398 src/ViennaRNA/2Dfold.c:2672:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,398 2672 | if (u < turn) 2025-12-07T06:14:11,399 | ^ 2025-12-07T06:14:11,406 src/ViennaRNA/2Dfold.c:2782:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,407 2782 | if (seq_length > 2 * turn) { 2025-12-07T06:14:11,408 | ^ 2025-12-07T06:14:11,413 src/ViennaRNA/2Dfold.c:2867:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,413 2867 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2025-12-07T06:14:11,414 | ^~ 2025-12-07T06:14:11,415 src/ViennaRNA/2Dfold.c:2868:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,416 2868 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2025-12-07T06:14:11,416 | ^~ 2025-12-07T06:14:11,420 src/ViennaRNA/2Dfold.c:2885:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,420 2885 | if (u < turn) 2025-12-07T06:14:11,421 | ^ 2025-12-07T06:14:11,424 src/ViennaRNA/2Dfold.c:2908:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,425 2908 | if ((k >= d1) && (l >= d2)) { 2025-12-07T06:14:11,425 | ^~ 2025-12-07T06:14:11,427 src/ViennaRNA/2Dfold.c:2908:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,428 2908 | if ((k >= d1) && (l >= d2)) { 2025-12-07T06:14:11,428 | ^~ 2025-12-07T06:14:11,429 src/ViennaRNA/2Dfold.c:2909:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,430 2909 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2025-12-07T06:14:11,430 | ^~ 2025-12-07T06:14:11,432 src/ViennaRNA/2Dfold.c:2909:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,433 2909 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2025-12-07T06:14:11,433 | ^~ 2025-12-07T06:14:11,435 src/ViennaRNA/2Dfold.c:2910:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,435 2910 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2025-12-07T06:14:11,436 | ^~ 2025-12-07T06:14:11,437 src/ViennaRNA/2Dfold.c:2910:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,438 2910 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2025-12-07T06:14:11,438 | ^~ 2025-12-07T06:14:11,441 src/ViennaRNA/2Dfold.c:2936:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,442 2936 | if (u < turn) 2025-12-07T06:14:11,442 | ^ 2025-12-07T06:14:11,448 src/ViennaRNA/2Dfold.c:2979:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,449 2979 | if ((k >= d1) && (l >= d2)) { 2025-12-07T06:14:11,450 | ^~ 2025-12-07T06:14:11,451 src/ViennaRNA/2Dfold.c:2979:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,452 2979 | if ((k >= d1) && (l >= d2)) { 2025-12-07T06:14:11,452 | ^~ 2025-12-07T06:14:11,454 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,454 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,455 | ^ 2025-12-07T06:14:11,455 src/ViennaRNA/2Dfold.c:2980:54: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,456 2980 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2025-12-07T06:14:11,456 | ^~~~ 2025-12-07T06:14:11,457 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,458 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,458 | ^~~ 2025-12-07T06:14:11,459 src/ViennaRNA/2Dfold.c:2980:54: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,459 2980 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2025-12-07T06:14:11,460 | ^~~~ 2025-12-07T06:14:11,461 src/ViennaRNA/2Dfold.c:2980:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,461 2980 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2025-12-07T06:14:11,462 | ^~ 2025-12-07T06:14:11,463 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,463 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,464 | ^ 2025-12-07T06:14:11,464 src/ViennaRNA/2Dfold.c:2981:62: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,464 2981 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2025-12-07T06:14:11,465 | ^~~~ 2025-12-07T06:14:11,465 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,466 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,466 | ^~~ 2025-12-07T06:14:11,467 src/ViennaRNA/2Dfold.c:2981:62: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,467 2981 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2025-12-07T06:14:11,468 | ^~~~ 2025-12-07T06:14:11,468 src/ViennaRNA/2Dfold.c:2981:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,469 2981 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2025-12-07T06:14:11,469 | ^~ 2025-12-07T06:14:11,470 src/ViennaRNA/2Dfold.c:2983:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,471 2983 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2025-12-07T06:14:11,471 | ^~ 2025-12-07T06:14:11,473 src/ViennaRNA/2Dfold.c:2983:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,473 2983 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2025-12-07T06:14:11,474 | ^~ 2025-12-07T06:14:11,475 src/ViennaRNA/2Dfold.c:2984:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,476 2984 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2025-12-07T06:14:11,477 | ^~ 2025-12-07T06:14:11,478 src/ViennaRNA/2Dfold.c:2985:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,478 2985 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2025-12-07T06:14:11,479 | ^~ 2025-12-07T06:14:11,481 src/ViennaRNA/2Dfold.c:3006:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,482 3006 | if (seq_length > 2 * turn) { 2025-12-07T06:14:11,482 | ^ 2025-12-07T06:14:11,485 src/ViennaRNA/2Dfold.c:3022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,486 3022 | if ((k >= d1) && (l >= d2)) { 2025-12-07T06:14:11,486 | ^~ 2025-12-07T06:14:11,488 src/ViennaRNA/2Dfold.c:3022:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,489 3022 | if ((k >= d1) && (l >= d2)) { 2025-12-07T06:14:11,489 | ^~ 2025-12-07T06:14:11,491 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,491 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,492 | ^ 2025-12-07T06:14:11,492 src/ViennaRNA/2Dfold.c:3024:58: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,492 3024 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2025-12-07T06:14:11,493 | ^~~~ 2025-12-07T06:14:11,493 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,494 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,494 | ^~~ 2025-12-07T06:14:11,495 src/ViennaRNA/2Dfold.c:3024:58: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,495 3024 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2025-12-07T06:14:11,496 | ^~~~ 2025-12-07T06:14:11,496 src/ViennaRNA/2Dfold.c:3024:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,497 3024 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2025-12-07T06:14:11,497 | ^~ 2025-12-07T06:14:11,499 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,500 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,500 | ^ 2025-12-07T06:14:11,501 src/ViennaRNA/2Dfold.c:3027:32: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,502 3027 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2025-12-07T06:14:11,502 | ^~~~ 2025-12-07T06:14:11,503 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,504 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,504 | ^~~ 2025-12-07T06:14:11,505 src/ViennaRNA/2Dfold.c:3027:32: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,505 3027 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2025-12-07T06:14:11,506 | ^~~~ 2025-12-07T06:14:11,507 src/ViennaRNA/2Dfold.c:3027:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,507 3027 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2025-12-07T06:14:11,508 | ^~ 2025-12-07T06:14:11,508 src/ViennaRNA/2Dfold.c:3028:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,509 3028 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2025-12-07T06:14:11,510 | ^~ 2025-12-07T06:14:11,510 src/ViennaRNA/2Dfold.c:3028:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,511 3028 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2025-12-07T06:14:11,512 | ^~ 2025-12-07T06:14:11,514 src/ViennaRNA/2Dfold.c:3029:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,514 3029 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2025-12-07T06:14:11,515 | ^~ 2025-12-07T06:14:11,516 src/ViennaRNA/2Dfold.c:3030:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,517 3030 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2025-12-07T06:14:11,518 | ^~ 2025-12-07T06:14:11,524 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2025-12-07T06:14:11,526 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,527 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,527 | ^ 2025-12-07T06:14:11,528 src/ViennaRNA/2Dfold.c:3177:41: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,528 3177 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2025-12-07T06:14:11,529 | ^~~~ 2025-12-07T06:14:11,529 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,530 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,531 | ^~~ 2025-12-07T06:14:11,531 src/ViennaRNA/2Dfold.c:3177:41: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,532 3177 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2025-12-07T06:14:11,533 | ^~~~ 2025-12-07T06:14:11,533 src/ViennaRNA/2Dfold.c:3177:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,534 3177 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2025-12-07T06:14:11,535 | ^~ 2025-12-07T06:14:11,535 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,536 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,537 | ^ 2025-12-07T06:14:11,537 src/ViennaRNA/2Dfold.c:3178:49: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,538 3178 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2025-12-07T06:14:11,538 | ^~~~ 2025-12-07T06:14:11,539 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:11,540 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:11,540 | ^~~ 2025-12-07T06:14:11,541 src/ViennaRNA/2Dfold.c:3178:49: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:11,542 3178 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2025-12-07T06:14:11,542 | ^~~~ 2025-12-07T06:14:11,543 src/ViennaRNA/2Dfold.c:3178:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:11,544 3178 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2025-12-07T06:14:11,545 | ^~ 2025-12-07T06:14:11,545 src/ViennaRNA/2Dfold.c:3179:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,546 3179 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2025-12-07T06:14:11,546 | ^~ 2025-12-07T06:14:11,547 src/ViennaRNA/2Dfold.c:3179:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,547 3179 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2025-12-07T06:14:11,548 | ^~ 2025-12-07T06:14:11,550 src/ViennaRNA/2Dfold.c:3180:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,550 3180 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2025-12-07T06:14:11,551 | ^~ 2025-12-07T06:14:11,552 src/ViennaRNA/2Dfold.c:3181:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,553 3181 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2025-12-07T06:14:11,554 | ^~ 2025-12-07T06:14:11,561 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2025-12-07T06:14:11,564 src/ViennaRNA/2Dfold.c:3561:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,565 3561 | if (u < turn) 2025-12-07T06:14:11,566 | ^ 2025-12-07T06:14:11,573 src/ViennaRNA/2Dfold.c:3635:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,574 3635 | if (u < turn) 2025-12-07T06:14:11,574 | ^ 2025-12-07T06:14:11,589 src/ViennaRNA/2Dfold.c:3800:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:11,589 3800 | if (seq_length > 2 * turn) { 2025-12-07T06:14:11,590 | ^ 2025-12-07T06:14:21,272 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dpfold.o -fopenmp 2025-12-07T06:14:21,523 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2025-12-07T06:14:21,523 src/ViennaRNA/2Dpfold.c:435:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,524 435 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2025-12-07T06:14:21,525 | ^ 2025-12-07T06:14:21,528 src/ViennaRNA/2Dpfold.c:587:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,528 587 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,529 | ^~ 2025-12-07T06:14:21,530 src/ViennaRNA/2Dpfold.c:587:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,531 587 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,532 | ^~ 2025-12-07T06:14:21,534 src/ViennaRNA/2Dpfold.c:670:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,535 670 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-07T06:14:21,535 | ^~ 2025-12-07T06:14:21,536 src/ViennaRNA/2Dpfold.c:670:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,537 670 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-07T06:14:21,538 | ^~ 2025-12-07T06:14:21,540 src/ViennaRNA/2Dpfold.c:800:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,541 800 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,543 | ^~ 2025-12-07T06:14:21,544 src/ViennaRNA/2Dpfold.c:800:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,545 800 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,546 | ^~ 2025-12-07T06:14:21,547 src/ViennaRNA/2Dpfold.c:832:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,549 832 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,550 | ^~ 2025-12-07T06:14:21,551 src/ViennaRNA/2Dpfold.c:832:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,552 832 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,553 | ^~ 2025-12-07T06:14:21,554 src/ViennaRNA/2Dpfold.c:956:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,555 956 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,556 | ^~ 2025-12-07T06:14:21,557 src/ViennaRNA/2Dpfold.c:956:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,558 956 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,559 | ^~ 2025-12-07T06:14:21,560 src/ViennaRNA/2Dpfold.c:995:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,561 995 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-07T06:14:21,562 | ^~ 2025-12-07T06:14:21,563 src/ViennaRNA/2Dpfold.c:995:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,564 995 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-07T06:14:21,565 | ^~ 2025-12-07T06:14:21,566 src/ViennaRNA/2Dpfold.c:1125:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,567 1125 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,567 | ^~ 2025-12-07T06:14:21,568 src/ViennaRNA/2Dpfold.c:1125:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,568 1125 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-07T06:14:21,569 | ^~ 2025-12-07T06:14:21,569 src/ViennaRNA/2Dpfold.c:1207:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,570 1207 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-07T06:14:21,570 | ^~ 2025-12-07T06:14:21,571 src/ViennaRNA/2Dpfold.c:1207:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,571 1207 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-07T06:14:21,572 | ^~ 2025-12-07T06:14:21,579 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2025-12-07T06:14:21,581 src/ViennaRNA/2Dpfold.c:1636:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,581 1636 | if (u < turn) 2025-12-07T06:14:21,582 | ^ 2025-12-07T06:14:21,592 src/ViennaRNA/2Dpfold.c:1854:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,593 1854 | if (seq_length > 2 * turn - 3) { 2025-12-07T06:14:21,594 | ^ 2025-12-07T06:14:21,615 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2025-12-07T06:14:21,618 src/ViennaRNA/2Dpfold.c:2312:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,619 2312 | if ((d1 == referenceBPs1[sn]) 2025-12-07T06:14:21,620 | ^~ 2025-12-07T06:14:21,621 src/ViennaRNA/2Dpfold.c:2313:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,622 2313 | && (d2 == referenceBPs2[sn])) { 2025-12-07T06:14:21,623 | ^~ 2025-12-07T06:14:21,625 src/ViennaRNA/2Dpfold.c:2324:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,626 2324 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,627 | ^~ 2025-12-07T06:14:21,629 src/ViennaRNA/2Dpfold.c:2324:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,630 2324 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,630 | ^~ 2025-12-07T06:14:21,632 src/ViennaRNA/2Dpfold.c:2326:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,633 2326 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2025-12-07T06:14:21,634 | ^~ 2025-12-07T06:14:21,636 src/ViennaRNA/2Dpfold.c:2327:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,636 2327 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2025-12-07T06:14:21,637 | ^~ 2025-12-07T06:14:21,639 src/ViennaRNA/2Dpfold.c:2329:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,640 2329 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2025-12-07T06:14:21,640 | ^~ 2025-12-07T06:14:21,643 src/ViennaRNA/2Dpfold.c:2330:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,643 2330 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2025-12-07T06:14:21,644 | ^~ 2025-12-07T06:14:21,648 src/ViennaRNA/2Dpfold.c:2358:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,649 2358 | if ((d1 >= da) 2025-12-07T06:14:21,650 | ^~ 2025-12-07T06:14:21,652 src/ViennaRNA/2Dpfold.c:2359:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,652 2359 | && (d2 >= db) 2025-12-07T06:14:21,653 | ^~ 2025-12-07T06:14:21,656 In file included from src/ViennaRNA/2Dpfold.c:18: 2025-12-07T06:14:21,656 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,657 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,657 | ^ 2025-12-07T06:14:21,658 src/ViennaRNA/2Dpfold.c:2363:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,659 2363 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2025-12-07T06:14:21,659 | ^~~~ 2025-12-07T06:14:21,660 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,661 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,661 | ^~~ 2025-12-07T06:14:21,662 src/ViennaRNA/2Dpfold.c:2363:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,662 2363 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2025-12-07T06:14:21,663 | ^~~~ 2025-12-07T06:14:21,664 src/ViennaRNA/2Dpfold.c:2363:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,665 2363 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2025-12-07T06:14:21,665 | ^~ 2025-12-07T06:14:21,667 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,668 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,668 | ^ 2025-12-07T06:14:21,669 src/ViennaRNA/2Dpfold.c:2366:28: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,671 2366 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2025-12-07T06:14:21,673 | ^~~~ 2025-12-07T06:14:21,676 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,679 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,682 | ^~~ 2025-12-07T06:14:21,684 src/ViennaRNA/2Dpfold.c:2366:28: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,687 2366 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2025-12-07T06:14:21,689 | ^~~~ 2025-12-07T06:14:21,691 src/ViennaRNA/2Dpfold.c:2366:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,694 2366 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2025-12-07T06:14:21,696 | ^~ 2025-12-07T06:14:21,698 src/ViennaRNA/2Dpfold.c:2368:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,700 2368 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2025-12-07T06:14:21,702 | ^~ 2025-12-07T06:14:21,704 src/ViennaRNA/2Dpfold.c:2369:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,705 2369 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2025-12-07T06:14:21,707 | ^~ 2025-12-07T06:14:21,709 src/ViennaRNA/2Dpfold.c:2370:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,711 2370 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2025-12-07T06:14:21,712 | ^~ 2025-12-07T06:14:21,714 src/ViennaRNA/2Dpfold.c:2371:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,716 2371 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2025-12-07T06:14:21,719 | ^~ 2025-12-07T06:14:21,721 src/ViennaRNA/2Dpfold.c:2395:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,723 2395 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,724 | ^~ 2025-12-07T06:14:21,727 src/ViennaRNA/2Dpfold.c:2395:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,729 2395 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,731 | ^~ 2025-12-07T06:14:21,733 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2025-12-07T06:14:21,735 src/ViennaRNA/2Dpfold.c:2559:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,738 2559 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2025-12-07T06:14:21,740 | ^~ 2025-12-07T06:14:21,743 src/ViennaRNA/2Dpfold.c:2559:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,745 2559 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2025-12-07T06:14:21,747 | ^~ 2025-12-07T06:14:21,749 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2025-12-07T06:14:21,752 src/ViennaRNA/2Dpfold.c:2763:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,754 2763 | if (((cnt1 + da) == d1) 2025-12-07T06:14:21,756 | ^~ 2025-12-07T06:14:21,758 src/ViennaRNA/2Dpfold.c:2764:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,759 2764 | && ((cnt2 + db) == d2)) { 2025-12-07T06:14:21,761 | ^~ 2025-12-07T06:14:21,763 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2025-12-07T06:14:21,764 src/ViennaRNA/2Dpfold.c:3042:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,766 3042 | if (((cnt1 + cnt3 + da) == d1) 2025-12-07T06:14:21,767 | ^~ 2025-12-07T06:14:21,767 src/ViennaRNA/2Dpfold.c:3043:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,768 3043 | && ((cnt2 + cnt4 + db) == d2)) { 2025-12-07T06:14:21,769 | ^~ 2025-12-07T06:14:21,770 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2025-12-07T06:14:21,771 src/ViennaRNA/2Dpfold.c:3228:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,772 3228 | if (((cnt1 + cnt3 + da) == d1) 2025-12-07T06:14:21,773 | ^~ 2025-12-07T06:14:21,774 src/ViennaRNA/2Dpfold.c:3229:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,774 3229 | && ((cnt2 + cnt4 + db) == d2)) { 2025-12-07T06:14:21,775 | ^~ 2025-12-07T06:14:21,776 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2025-12-07T06:14:21,777 src/ViennaRNA/2Dpfold.c:3400:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,778 3400 | if (((cnt1 + cnt3 + da) == d1) 2025-12-07T06:14:21,779 | ^~ 2025-12-07T06:14:21,780 src/ViennaRNA/2Dpfold.c:3401:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,781 3401 | && ((cnt2 + cnt4 + db) == d2)) { 2025-12-07T06:14:21,782 | ^~ 2025-12-07T06:14:21,783 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2025-12-07T06:14:21,784 src/ViennaRNA/2Dpfold.c:3599:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,785 3599 | if ((da == d1) && (db == d2)) 2025-12-07T06:14:21,786 | ^~ 2025-12-07T06:14:21,787 src/ViennaRNA/2Dpfold.c:3599:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,787 3599 | if ((da == d1) && (db == d2)) 2025-12-07T06:14:21,788 | ^~ 2025-12-07T06:14:21,789 src/ViennaRNA/2Dpfold.c:3634:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,790 3634 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,791 | ^~ 2025-12-07T06:14:21,792 src/ViennaRNA/2Dpfold.c:3634:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,793 3634 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,794 | ^~ 2025-12-07T06:14:21,795 src/ViennaRNA/2Dpfold.c:3635:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,795 3635 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2025-12-07T06:14:21,797 | ^~ 2025-12-07T06:14:21,798 src/ViennaRNA/2Dpfold.c:3636:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,799 3636 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2025-12-07T06:14:21,800 | ^~ 2025-12-07T06:14:21,801 src/ViennaRNA/2Dpfold.c:3637:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,802 3637 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2025-12-07T06:14:21,803 | ^~ 2025-12-07T06:14:21,805 src/ViennaRNA/2Dpfold.c:3638:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,806 3638 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2025-12-07T06:14:21,807 | ^~ 2025-12-07T06:14:21,818 src/ViennaRNA/2Dpfold.c:3810:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,818 3810 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-07T06:14:21,819 | ^~ 2025-12-07T06:14:21,821 src/ViennaRNA/2Dpfold.c:3810:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,822 3810 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-07T06:14:21,822 | ^~ 2025-12-07T06:14:21,825 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,826 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,826 | ^ 2025-12-07T06:14:21,827 src/ViennaRNA/2Dpfold.c:3811:54: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,827 3811 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,828 | ^~~~ 2025-12-07T06:14:21,829 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,830 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,831 | ^~~ 2025-12-07T06:14:21,831 src/ViennaRNA/2Dpfold.c:3811:54: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,832 3811 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,832 | ^~~~ 2025-12-07T06:14:21,834 src/ViennaRNA/2Dpfold.c:3811:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,834 3811 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,835 | ^~ 2025-12-07T06:14:21,837 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,838 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,839 | ^ 2025-12-07T06:14:21,839 src/ViennaRNA/2Dpfold.c:3813:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,840 3813 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:21,840 | ^~~~ 2025-12-07T06:14:21,842 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,842 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,843 | ^~~ 2025-12-07T06:14:21,843 src/ViennaRNA/2Dpfold.c:3813:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,844 3813 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:21,844 | ^~~~ 2025-12-07T06:14:21,846 src/ViennaRNA/2Dpfold.c:3813:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,846 3813 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:21,847 | ^~ 2025-12-07T06:14:21,849 src/ViennaRNA/2Dpfold.c:3814:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,850 3814 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2025-12-07T06:14:21,850 | ^~ 2025-12-07T06:14:21,853 src/ViennaRNA/2Dpfold.c:3814:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,854 3814 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2025-12-07T06:14:21,854 | ^~ 2025-12-07T06:14:21,857 src/ViennaRNA/2Dpfold.c:3815:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,857 3815 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2025-12-07T06:14:21,858 | ^~ 2025-12-07T06:14:21,861 src/ViennaRNA/2Dpfold.c:3816:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,862 3816 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2025-12-07T06:14:21,863 | ^~ 2025-12-07T06:14:21,866 src/ViennaRNA/2Dpfold.c:3827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,866 3827 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-07T06:14:21,867 | ^~ 2025-12-07T06:14:21,869 src/ViennaRNA/2Dpfold.c:3827:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,870 3827 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-07T06:14:21,871 | ^~ 2025-12-07T06:14:21,873 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,874 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,874 | ^ 2025-12-07T06:14:21,875 src/ViennaRNA/2Dpfold.c:3828:54: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,875 3828 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,876 | ^~~~ 2025-12-07T06:14:21,877 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,878 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,879 | ^~~ 2025-12-07T06:14:21,879 src/ViennaRNA/2Dpfold.c:3828:54: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,880 3828 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,881 | ^~~~ 2025-12-07T06:14:21,882 src/ViennaRNA/2Dpfold.c:3828:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,882 3828 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,883 | ^~ 2025-12-07T06:14:21,885 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,886 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,886 | ^ 2025-12-07T06:14:21,887 src/ViennaRNA/2Dpfold.c:3830:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,887 3830 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:21,888 | ^~~~ 2025-12-07T06:14:21,889 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,890 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,890 | ^~~ 2025-12-07T06:14:21,891 src/ViennaRNA/2Dpfold.c:3830:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,891 3830 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:21,892 | ^~~~ 2025-12-07T06:14:21,894 src/ViennaRNA/2Dpfold.c:3830:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,894 3830 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:21,895 | ^~ 2025-12-07T06:14:21,897 src/ViennaRNA/2Dpfold.c:3831:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,898 3831 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2025-12-07T06:14:21,898 | ^~ 2025-12-07T06:14:21,901 src/ViennaRNA/2Dpfold.c:3832:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,901 3832 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2025-12-07T06:14:21,902 | ^~ 2025-12-07T06:14:21,904 src/ViennaRNA/2Dpfold.c:3833:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,905 3833 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2025-12-07T06:14:21,905 | ^~ 2025-12-07T06:14:21,908 src/ViennaRNA/2Dpfold.c:3834:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,909 3834 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2025-12-07T06:14:21,909 | ^~ 2025-12-07T06:14:21,912 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2025-12-07T06:14:21,915 src/ViennaRNA/2Dpfold.c:3965:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,916 3965 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,916 | ^~ 2025-12-07T06:14:21,919 src/ViennaRNA/2Dpfold.c:3965:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,920 3965 | if (d1 >= da && d2 >= db) { 2025-12-07T06:14:21,921 | ^~ 2025-12-07T06:14:21,923 src/ViennaRNA/2Dpfold.c:3966:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,924 3966 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2025-12-07T06:14:21,924 | ^~ 2025-12-07T06:14:21,927 src/ViennaRNA/2Dpfold.c:3966:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,928 3966 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2025-12-07T06:14:21,928 | ^~ 2025-12-07T06:14:21,931 src/ViennaRNA/2Dpfold.c:3967:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,931 3967 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2025-12-07T06:14:21,932 | ^~ 2025-12-07T06:14:21,934 src/ViennaRNA/2Dpfold.c:3968:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,935 3968 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2025-12-07T06:14:21,936 | ^~ 2025-12-07T06:14:21,942 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2025-12-07T06:14:21,946 src/ViennaRNA/2Dpfold.c:4186:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,947 4186 | if (d1 >= da2 && d2 >= db2) { 2025-12-07T06:14:21,947 | ^~ 2025-12-07T06:14:21,950 src/ViennaRNA/2Dpfold.c:4186:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,951 4186 | if (d1 >= da2 && d2 >= db2) { 2025-12-07T06:14:21,952 | ^~ 2025-12-07T06:14:21,954 src/ViennaRNA/2Dpfold.c:4187:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,955 4187 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2025-12-07T06:14:21,955 | ^~ 2025-12-07T06:14:21,959 src/ViennaRNA/2Dpfold.c:4187:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,959 4187 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2025-12-07T06:14:21,960 | ^~ 2025-12-07T06:14:21,963 src/ViennaRNA/2Dpfold.c:4188:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,963 4188 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2025-12-07T06:14:21,964 | ^~ 2025-12-07T06:14:21,966 src/ViennaRNA/2Dpfold.c:4189:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:21,967 4189 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2025-12-07T06:14:21,968 | ^~ 2025-12-07T06:14:21,971 src/ViennaRNA/2Dpfold.c:4202:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,971 4202 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2025-12-07T06:14:21,972 | ^~ 2025-12-07T06:14:21,975 src/ViennaRNA/2Dpfold.c:4202:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,976 4202 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2025-12-07T06:14:21,976 | ^~ 2025-12-07T06:14:21,979 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,980 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,980 | ^ 2025-12-07T06:14:21,981 src/ViennaRNA/2Dpfold.c:4204:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,981 4204 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,982 | ^~~~ 2025-12-07T06:14:21,984 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,984 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,985 | ^~~ 2025-12-07T06:14:21,985 src/ViennaRNA/2Dpfold.c:4204:26: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,985 4204 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,986 | ^~~~ 2025-12-07T06:14:21,988 src/ViennaRNA/2Dpfold.c:4204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,989 4204 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2025-12-07T06:14:21,989 | ^~ 2025-12-07T06:14:21,992 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:21,993 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,993 | ^ 2025-12-07T06:14:21,994 src/ViennaRNA/2Dpfold.c:4206:28: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,995 4206 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:21,995 | ^~~~ 2025-12-07T06:14:21,997 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:14:21,997 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:14:21,998 | ^~~ 2025-12-07T06:14:21,999 src/ViennaRNA/2Dpfold.c:4206:28: note: in expansion of macro ‘MIN2’ 2025-12-07T06:14:21,999 4206 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:22,000 | ^~~~ 2025-12-07T06:14:22,001 src/ViennaRNA/2Dpfold.c:4206:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:22,002 4206 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-07T06:14:22,002 | ^~ 2025-12-07T06:14:22,005 src/ViennaRNA/2Dpfold.c:4207:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:22,006 4207 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2025-12-07T06:14:22,006 | ^~ 2025-12-07T06:14:22,009 src/ViennaRNA/2Dpfold.c:4208:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:22,010 4208 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2025-12-07T06:14:22,011 | ^~ 2025-12-07T06:14:22,013 src/ViennaRNA/2Dpfold.c:4209:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:22,014 4209 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2025-12-07T06:14:22,014 | ^~ 2025-12-07T06:14:22,017 src/ViennaRNA/2Dpfold.c:4210:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:14:22,018 4210 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2025-12-07T06:14:22,018 | ^~ 2025-12-07T06:14:22,023 src/ViennaRNA/2Dpfold.c:4243:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:22,023 4243 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2025-12-07T06:14:22,024 | ^~ 2025-12-07T06:14:22,027 src/ViennaRNA/2Dpfold.c:4243:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:14:22,028 4243 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2025-12-07T06:14:22,028 | ^~ 2025-12-07T06:14:28,647 In function ‘updatePosteriorBoundaries’, 2025-12-07T06:14:28,648 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:591:21: 2025-12-07T06:14:28,649 src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:28,650 4392 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2025-12-07T06:14:28,651 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-07T06:14:28,651 src/ViennaRNA/2Dpfold.c:471:57: note: ‘l_max_post_b’ was declared here 2025-12-07T06:14:28,652 471 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2025-12-07T06:14:28,652 | ^~~~~~~~~~~~ 2025-12-07T06:14:28,653 In function ‘updatePosteriorBoundaries’, 2025-12-07T06:14:28,653 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:591:21: 2025-12-07T06:14:28,654 src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:28,654 4391 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2025-12-07T06:14:28,655 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-07T06:14:28,655 src/ViennaRNA/2Dpfold.c:471:42: note: ‘l_min_post_b’ was declared here 2025-12-07T06:14:28,656 471 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2025-12-07T06:14:28,656 | ^~~~~~~~~~~~ 2025-12-07T06:14:28,657 In function ‘updatePosteriorBoundaries’, 2025-12-07T06:14:28,658 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1214:21: 2025-12-07T06:14:28,658 src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:28,659 4392 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2025-12-07T06:14:28,659 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-07T06:14:28,660 src/ViennaRNA/2Dpfold.c:1045:49: note: ‘l_max_post’ was declared here 2025-12-07T06:14:28,660 1045 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2025-12-07T06:14:28,661 | ^~~~~~~~~~ 2025-12-07T06:14:28,662 In function ‘updatePosteriorBoundaries’, 2025-12-07T06:14:28,662 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1214:21: 2025-12-07T06:14:28,663 src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:28,663 4391 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2025-12-07T06:14:28,664 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-07T06:14:28,664 src/ViennaRNA/2Dpfold.c:1045:36: note: ‘l_min_post’ was declared here 2025-12-07T06:14:28,665 1045 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2025-12-07T06:14:28,665 | ^~~~~~~~~~ 2025-12-07T06:14:28,665 In function ‘updatePosteriorBoundaries’, 2025-12-07T06:14:28,666 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:962:17: 2025-12-07T06:14:28,666 src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:28,667 4392 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2025-12-07T06:14:28,668 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-07T06:14:28,668 src/ViennaRNA/2Dpfold.c:715:55: note: ‘l_max_post_m’ was declared here 2025-12-07T06:14:28,669 715 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2025-12-07T06:14:28,669 | ^~~~~~~~~~~~ 2025-12-07T06:14:28,670 In function ‘updatePosteriorBoundaries’, 2025-12-07T06:14:28,670 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:962:17: 2025-12-07T06:14:28,671 src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:28,672 4391 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2025-12-07T06:14:28,672 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-07T06:14:28,673 src/ViennaRNA/2Dpfold.c:715:40: note: ‘l_min_post_m’ was declared here 2025-12-07T06:14:28,674 715 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2025-12-07T06:14:28,674 | ^~~~~~~~~~~~ 2025-12-07T06:14:32,510 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileAln.o -fopenmp 2025-12-07T06:14:33,374 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileDist.o -fopenmp 2025-12-07T06:14:33,696 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2025-12-07T06:14:33,697 src/ViennaRNA/ProfileDist.c:181:11: warning: ‘dist’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:33,697 181 | double dist; 2025-12-07T06:14:33,698 | ^~~~ 2025-12-07T06:14:34,058 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/RNAstruct.o -fopenmp 2025-12-07T06:14:34,212 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2025-12-07T06:14:34,213 src/ViennaRNA/RNAstruct.c:306:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:34,214 306 | for (k = 0; k < strlen(tt); k++) 2025-12-07T06:14:34,214 | ^ 2025-12-07T06:14:34,215 src/ViennaRNA/RNAstruct.c:309:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:34,215 309 | for (k = 0; k < strlen(tt); k++) 2025-12-07T06:14:34,216 | ^ 2025-12-07T06:14:34,216 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2025-12-07T06:14:34,217 src/ViennaRNA/RNAstruct.c:449:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:34,218 449 | while (i < strlen(structure) - 1) { 2025-12-07T06:14:34,218 | ^ 2025-12-07T06:14:34,220 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2025-12-07T06:14:34,221 src/ViennaRNA/RNAstruct.c:603:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:34,222 603 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2025-12-07T06:14:34,222 | ^ 2025-12-07T06:14:35,027 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ali_plex.o -fopenmp 2025-12-07T06:14:35,287 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2025-12-07T06:14:35,287 src/ViennaRNA/ali_plex.c:244:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:35,288 244 | if (strlen(s1[s]) != n3) { 2025-12-07T06:14:35,289 | ^~ 2025-12-07T06:14:35,290 src/ViennaRNA/ali_plex.c:251:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:35,290 251 | if (strlen(s2[s]) != n4) { 2025-12-07T06:14:35,291 | ^~ 2025-12-07T06:14:35,297 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2025-12-07T06:14:35,297 src/ViennaRNA/ali_plex.c:540:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:35,298 540 | if (strlen(s1[s]) != n1) { 2025-12-07T06:14:35,299 | ^~ 2025-12-07T06:14:35,299 src/ViennaRNA/ali_plex.c:549:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:35,300 549 | if (strlen(s2[s]) != n2) { 2025-12-07T06:14:35,301 | ^~ 2025-12-07T06:14:36,858 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2025-12-07T06:14:36,858 src/ViennaRNA/ali_plex.c:1099:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:36,859 1099 | if (strlen(s1[s]) != n3) { 2025-12-07T06:14:36,860 | ^~ 2025-12-07T06:14:36,860 src/ViennaRNA/ali_plex.c:1105:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:36,861 1105 | if (strlen(s2[s]) != n4) { 2025-12-07T06:14:36,862 | ^~ 2025-12-07T06:14:36,876 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-07T06:14:36,877 src/ViennaRNA/ali_plex.c:1436:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:36,877 1436 | if (strlen(s1[s]) != n1) 2025-12-07T06:14:36,878 | ^~ 2025-12-07T06:14:36,878 src/ViennaRNA/ali_plex.c:1439:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:14:36,879 1439 | if (strlen(s2[s]) != n2) 2025-12-07T06:14:36,879 | ^~ 2025-12-07T06:14:39,457 In function ‘alibacktrack’, 2025-12-07T06:14:39,459 inlined from ‘aliduplexfold’ at src/ViennaRNA/ali_plex.c:316:5: 2025-12-07T06:14:39,462 src/ViennaRNA/ali_plex.c:436:9: warning: ‘struc’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:39,464 436 | free(struc); 2025-12-07T06:14:39,466 | ^~~~~~~~~~~ 2025-12-07T06:14:39,468 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2025-12-07T06:14:39,470 src/ViennaRNA/ali_plex.c:366:22: note: ‘struc’ was declared here 2025-12-07T06:14:39,472 366 | char *st1, *st2, *struc; 2025-12-07T06:14:39,474 | ^~~~~ 2025-12-07T06:14:41,016 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2025-12-07T06:14:41,017 src/ViennaRNA/ali_plex.c:1010:62: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:41,018 1010 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2025-12-07T06:14:41,018 | ^ 2025-12-07T06:14:41,019 src/ViennaRNA/ali_plex.c:497:9: note: ‘max_pos_j’ was declared here 2025-12-07T06:14:41,020 497 | int max_pos_j; 2025-12-07T06:14:41,020 | ^~~~~~~~~ 2025-12-07T06:14:41,021 src/ViennaRNA/ali_plex.c:1007:57: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:41,022 1007 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2025-12-07T06:14:41,023 | ^ 2025-12-07T06:14:41,023 src/ViennaRNA/ali_plex.c:496:9: note: ‘max_pos’ was declared here 2025-12-07T06:14:41,024 496 | int max_pos; /* get position of the best hit */ 2025-12-07T06:14:41,025 | ^~~~~~~ 2025-12-07T06:14:41,026 src/ViennaRNA/ali_plex.c:847:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:41,026 847 | position_j[i + delta] = min_j_colonne; 2025-12-07T06:14:41,027 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-07T06:14:41,028 src/ViennaRNA/ali_plex.c:499:9: note: ‘min_j_colonne’ was declared here 2025-12-07T06:14:41,029 499 | int min_j_colonne; 2025-12-07T06:14:41,029 | ^~~~~~~~~~~~~ 2025-12-07T06:14:41,030 In function ‘update_dfold_params’, 2025-12-07T06:14:41,031 inlined from ‘aliLduplexfold’ at src/ViennaRNA/ali_plex.c:531:7: 2025-12-07T06:14:41,031 src/ViennaRNA/ali_plex.c:2005:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-07T06:14:41,032 2005 | free(P); 2025-12-07T06:14:41,033 | ^~~~~~~ 2025-12-07T06:14:41,034 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2025-12-07T06:14:41,035 src/ViennaRNA/ali_plex.c:530:7: note: call to ‘free’ here 2025-12-07T06:14:41,035 530 | free(P); 2025-12-07T06:14:41,036 | ^~~~~~~ 2025-12-07T06:14:42,317 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-07T06:14:42,319 src/ViennaRNA/ali_plex.c:1907:64: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:42,319 1907 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2025-12-07T06:14:42,320 | ^ 2025-12-07T06:14:42,320 src/ViennaRNA/ali_plex.c:1369:9: note: ‘max_pos_j’ was declared here 2025-12-07T06:14:42,321 1369 | int max_pos_j; 2025-12-07T06:14:42,321 | ^~~~~~~~~ 2025-12-07T06:14:42,322 In function ‘aliplot_max_XS’, 2025-12-07T06:14:42,322 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1748:3: 2025-12-07T06:14:42,322 src/ViennaRNA/ali_plex.c:1901:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:42,323 1901 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2025-12-07T06:14:42,323 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:14:42,324 1902 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2025-12-07T06:14:42,324 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:14:42,325 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-07T06:14:42,325 src/ViennaRNA/ali_plex.c:1368:9: note: ‘max_pos’ was declared here 2025-12-07T06:14:42,326 1368 | int max_pos; /* get position of the best hit */ 2025-12-07T06:14:42,326 | ^~~~~~~ 2025-12-07T06:14:42,327 src/ViennaRNA/ali_plex.c:1725:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:42,328 1725 | position_j[i + delta] = min_j_colonne; 2025-12-07T06:14:42,328 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-07T06:14:42,329 src/ViennaRNA/ali_plex.c:1371:9: note: ‘min_j_colonne’ was declared here 2025-12-07T06:14:42,329 1371 | int min_j_colonne; 2025-12-07T06:14:42,330 | ^~~~~~~~~~~~~ 2025-12-07T06:14:42,330 In function ‘update_dfold_params’, 2025-12-07T06:14:42,331 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1404:7: 2025-12-07T06:14:42,332 src/ViennaRNA/ali_plex.c:2005:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-07T06:14:42,332 2005 | free(P); 2025-12-07T06:14:42,333 | ^~~~~~~ 2025-12-07T06:14:42,334 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-07T06:14:42,334 src/ViennaRNA/ali_plex.c:1403:7: note: call to ‘free’ here 2025-12-07T06:14:42,335 1403 | free(P); 2025-12-07T06:14:42,336 | ^~~~~~~ 2025-12-07T06:14:43,465 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_exterior.o -fopenmp 2025-12-07T06:14:43,698 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_exterior_f3.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_exterior_f3.o -fopenmp 2025-12-07T06:14:45,335 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_exterior_f5.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_exterior_f5.o -fopenmp 2025-12-07T06:14:46,457 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_gquad.o -fopenmp 2025-12-07T06:14:47,834 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_hairpin.o -fopenmp 2025-12-07T06:14:48,183 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_internal.o -fopenmp 2025-12-07T06:14:51,319 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_multibranch.o -fopenmp 2025-12-07T06:14:55,574 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/c_plex.o -fopenmp 2025-12-07T06:14:55,900 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2025-12-07T06:14:55,901 src/ViennaRNA/c_plex.c:368:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:14:55,902 368 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2025-12-07T06:14:55,903 | ^~~~~~~ 2025-12-07T06:14:55,943 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2025-12-07T06:14:55,944 src/ViennaRNA/c_plex.c:960:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:55,945 960 | if (dL <= strlen(test.structure) - l1 - 1) { 2025-12-07T06:14:55,946 | ^~ 2025-12-07T06:14:55,947 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2025-12-07T06:14:55,947 src/ViennaRNA/c_plex.c:1011:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:55,948 1011 | if (dL <= strlen(test.structure) - l1 - 1) 2025-12-07T06:14:55,948 | ^~ 2025-12-07T06:14:55,955 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2025-12-07T06:14:55,956 src/ViennaRNA/c_plex.c:1032:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:14:55,957 1032 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-07T06:14:55,957 | ^~ 2025-12-07T06:14:55,983 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2025-12-07T06:14:55,984 src/ViennaRNA/c_plex.c:1662:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:55,985 1662 | if (dL <= strlen(test.structure) - l1 - 1) { 2025-12-07T06:14:55,985 | ^~ 2025-12-07T06:14:55,986 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2025-12-07T06:14:55,988 src/ViennaRNA/c_plex.c:1716:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:14:55,988 1716 | if (dL <= strlen(test.structure) - l1 - 1) { 2025-12-07T06:14:55,989 | ^~ 2025-12-07T06:14:58,357 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2025-12-07T06:14:58,358 src/ViennaRNA/c_plex.c:996:73: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:58,359 996 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2025-12-07T06:14:58,359 | ^ 2025-12-07T06:14:58,360 src/ViennaRNA/c_plex.c:543:13: note: ‘max_pos_j’ was declared here 2025-12-07T06:14:58,361 543 | int max_pos_j; 2025-12-07T06:14:58,361 | ^~~~~~~~~ 2025-12-07T06:14:58,362 In function ‘plot_max_CXS’, 2025-12-07T06:14:58,363 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:843:5: 2025-12-07T06:14:58,363 src/ViennaRNA/c_plex.c:990:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:58,364 990 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", max_pos - 3, max_pos_j, 2025-12-07T06:14:58,364 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:14:58,365 991 | ((double)max) / 100); 2025-12-07T06:14:58,366 | ~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:14:58,367 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2025-12-07T06:14:58,368 src/ViennaRNA/c_plex.c:542:13: note: ‘max_pos’ was declared here 2025-12-07T06:14:58,369 542 | int max_pos; /* get position of the best hit */ 2025-12-07T06:14:58,370 | ^~~~~~~ 2025-12-07T06:14:58,371 src/ViennaRNA/c_plex.c:819:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:58,372 819 | position_j[i + delta] = min_j_colonne; 2025-12-07T06:14:58,373 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-07T06:14:58,374 src/ViennaRNA/c_plex.c:545:13: note: ‘min_j_colonne’ was declared here 2025-12-07T06:14:58,375 545 | int min_j_colonne; 2025-12-07T06:14:58,376 | ^~~~~~~~~~~~~ 2025-12-07T06:14:58,376 In function ‘update_dfold_params’, 2025-12-07T06:14:58,377 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:580:7: 2025-12-07T06:14:58,378 src/ViennaRNA/c_plex.c:1736:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-07T06:14:58,378 1736 | free(P); 2025-12-07T06:14:58,380 | ^~~~~~~ 2025-12-07T06:14:58,380 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2025-12-07T06:14:58,381 src/ViennaRNA/c_plex.c:579:7: note: call to ‘free’ here 2025-12-07T06:14:58,381 579 | free(P); 2025-12-07T06:14:58,382 | ^~~~~~~ 2025-12-07T06:14:59,768 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2025-12-07T06:14:59,769 src/ViennaRNA/c_plex.c:1699:69: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:14:59,770 1699 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2025-12-07T06:14:59,770 | ^ 2025-12-07T06:14:59,771 src/ViennaRNA/c_plex.c:1296:7: note: ‘max_pos’ was declared here 2025-12-07T06:14:59,771 1296 | int max_pos; /* get position of the best hit */ 2025-12-07T06:14:59,772 | ^~~~~~~ 2025-12-07T06:14:59,773 In function ‘update_dfold_params’, 2025-12-07T06:14:59,773 inlined from ‘Lduplexfold_C’ at src/ViennaRNA/c_plex.c:1350:7: 2025-12-07T06:14:59,774 src/ViennaRNA/c_plex.c:1736:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-07T06:14:59,774 1736 | free(P); 2025-12-07T06:14:59,775 | ^~~~~~~ 2025-12-07T06:14:59,775 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2025-12-07T06:14:59,776 src/ViennaRNA/c_plex.c:1349:7: note: call to ‘free’ here 2025-12-07T06:14:59,777 1349 | free(P); 2025-12-07T06:14:59,777 | ^~~~~~~ 2025-12-07T06:15:00,768 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/combinatorics/combinatorics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics/combinatorics.o -fopenmp 2025-12-07T06:15:01,566 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/concentrations.o -fopenmp 2025-12-07T06:15:01,950 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/constraints.o -fopenmp 2025-12-07T06:15:02,464 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/hard.o -fopenmp 2025-12-07T06:15:02,777 In file included from src/ViennaRNA/constraints/hard.c:42: 2025-12-07T06:15:02,778 src/ViennaRNA/constraints/wrap_internal_hc.inc: In function ‘hc_int_cb_sn’: 2025-12-07T06:15:02,779 src/ViennaRNA/constraints/wrap_internal_hc.inc:84:25: warning: unused variable ‘u3’ [-Wunused-variable] 2025-12-07T06:15:02,779 84 | unsigned int u1, u2, u3; 2025-12-07T06:15:02,780 | ^~ 2025-12-07T06:15:02,781 src/ViennaRNA/constraints/wrap_internal_hc.inc:84:21: warning: unused variable ‘u2’ [-Wunused-variable] 2025-12-07T06:15:02,781 84 | unsigned int u1, u2, u3; 2025-12-07T06:15:02,782 | ^~ 2025-12-07T06:15:02,783 src/ViennaRNA/constraints/wrap_internal_hc.inc:84:17: warning: unused variable ‘u1’ [-Wunused-variable] 2025-12-07T06:15:02,783 84 | unsigned int u1, u2, u3; 2025-12-07T06:15:02,784 | ^~ 2025-12-07T06:15:02,785 src/ViennaRNA/constraints/wrap_internal_hc.inc:83:22: warning: unused variable ‘pkl’ [-Wunused-variable] 2025-12-07T06:15:02,785 83 | unsigned char pij, pkl; 2025-12-07T06:15:02,786 | ^~~ 2025-12-07T06:15:02,787 src/ViennaRNA/constraints/wrap_internal_hc.inc:83:17: warning: unused variable ‘pij’ [-Wunused-variable] 2025-12-07T06:15:02,788 83 | unsigned char pij, pkl; 2025-12-07T06:15:02,788 | ^~~ 2025-12-07T06:15:02,789 src/ViennaRNA/constraints/wrap_internal_hc.inc: In function ‘wrap_hc_int_cb_window’: 2025-12-07T06:15:02,790 src/ViennaRNA/constraints/wrap_internal_hc.inc:102:25: warning: unused variable ‘u3’ [-Wunused-variable] 2025-12-07T06:15:02,791 102 | unsigned int u1, u2, u3; 2025-12-07T06:15:02,791 | ^~ 2025-12-07T06:15:02,856 In file included from src/ViennaRNA/constraints/hard.c:41: 2025-12-07T06:15:02,857 src/ViennaRNA/constraints/wrap_hairpin_hc.inc: At top level: 2025-12-07T06:15:02,858 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:4:1: warning: ‘wrap_hc_hp_cb_def’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:15:02,858 4 | wrap_hc_hp_cb_def(int i, 2025-12-07T06:15:02,859 | ^~~~~~~~~~~~~~~~~ 2025-12-07T06:15:02,860 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:10:1: warning: ‘wrap_hc_hp_cb_def_window’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:15:02,860 10 | wrap_hc_hp_cb_def_window(int i, 2025-12-07T06:15:02,861 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:15:02,861 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:16:1: warning: ‘wrap_hc_hp_cb_def_user’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:15:02,862 16 | wrap_hc_hp_cb_def_user(int i, 2025-12-07T06:15:02,863 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:15:02,863 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:22:1: warning: ‘wrap_hc_hp_cb_def_user_window’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:15:02,864 22 | wrap_hc_hp_cb_def_user_window(int i, 2025-12-07T06:15:02,864 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:15:02,865 src/ViennaRNA/constraints/wrap_internal_hc.inc:2:1: warning: ‘hc_int_cb_def’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:15:02,866 2 | hc_int_cb_def(int i, 2025-12-07T06:15:02,866 | ^~~~~~~~~~~~~ 2025-12-07T06:15:02,867 src/ViennaRNA/constraints/wrap_internal_hc.inc:10:1: warning: ‘hc_int_cb_def_user’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:15:02,867 10 | hc_int_cb_def_user(int i, 2025-12-07T06:15:02,868 | ^~~~~~~~~~~~~~~~~~ 2025-12-07T06:15:06,592 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/ligand.o -fopenmp 2025-12-07T06:15:07,580 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2025-12-07T06:15:07,774 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2025-12-07T06:15:07,775 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:15:07,776 761 | char nt[MAX_ALPHABET] = { 2025-12-07T06:15:07,776 | ^~ 2025-12-07T06:15:07,778 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2025-12-07T06:15:07,779 src/ViennaRNA/constraints/sc_cb_mod.c:858:17: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:15:07,780 858 | char bp[3] = { 2025-12-07T06:15:07,780 | ^~ 2025-12-07T06:15:07,783 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2025-12-07T06:15:07,784 src/ViennaRNA/constraints/sc_cb_mod.c:963:17: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:15:07,784 963 | char bp[3] = { 2025-12-07T06:15:07,785 | ^~ 2025-12-07T06:15:07,786 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2025-12-07T06:15:07,787 src/ViennaRNA/constraints/sc_cb_mod.c:1072:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:15:07,788 1072 | char nt[MAX_ALPHABET] = { 2025-12-07T06:15:07,788 | ^~ 2025-12-07T06:15:10,163 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2025-12-07T06:15:10,894 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2025-12-07T06:15:21,169 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft.o -fopenmp 2025-12-07T06:15:23,997 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2025-12-07T06:15:24,906 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/data/transform.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/data/transform.o -fopenmp 2025-12-07T06:15:25,173 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/array.o -fopenmp 2025-12-07T06:15:25,391 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2025-12-07T06:15:25,728 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2025-12-07T06:15:26,402 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/dp_matrices.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/dp_matrices.o -fopenmp 2025-12-07T06:15:28,312 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2025-12-07T06:15:28,809 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/heap.o -fopenmp 2025-12-07T06:15:29,311 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/lists.o -fopenmp 2025-12-07T06:15:29,621 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/sparse_mx.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/sparse_mx.o -fopenmp 2025-12-07T06:15:30,350 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2025-12-07T06:15:30,687 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/string.o -fopenmp 2025-12-07T06:15:30,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dist_vars.o -fopenmp 2025-12-07T06:15:31,003 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/duplex.o -fopenmp 2025-12-07T06:15:31,277 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2025-12-07T06:15:31,278 src/ViennaRNA/duplex.c:460:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:15:31,278 460 | if (strlen(s1[s]) != n1) { 2025-12-07T06:15:31,279 | ^~ 2025-12-07T06:15:31,279 src/ViennaRNA/duplex.c:467:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:15:31,280 467 | if (strlen(s2[s]) != n2) { 2025-12-07T06:15:31,281 | ^~ 2025-12-07T06:15:31,284 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2025-12-07T06:15:31,285 src/ViennaRNA/duplex.c:589:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:15:31,285 589 | if (strlen(s1[s]) != n1) { 2025-12-07T06:15:31,286 | ^~ 2025-12-07T06:15:31,286 src/ViennaRNA/duplex.c:596:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:15:31,287 596 | if (strlen(s2[s]) != n2) { 2025-12-07T06:15:31,288 | ^~ 2025-12-07T06:15:33,594 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_covariance.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_covariance.o -fopenmp 2025-12-07T06:15:34,023 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_exterior.o -fopenmp 2025-12-07T06:15:34,591 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_gquad.o -fopenmp 2025-12-07T06:15:35,350 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_hairpin.o -fopenmp 2025-12-07T06:15:36,754 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_internal.o -fopenmp 2025-12-07T06:15:39,989 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_multibranch.o -fopenmp 2025-12-07T06:15:40,303 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_structures.o -fopenmp 2025-12-07T06:15:44,509 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_wrappers.o -fopenmp 2025-12-07T06:15:45,317 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_exterior.o -fopenmp 2025-12-07T06:15:45,670 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_hairpin.o -fopenmp 2025-12-07T06:15:47,101 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_internal.o -fopenmp 2025-12-07T06:15:50,070 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_multibranch.o -fopenmp 2025-12-07T06:15:50,354 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold_compound.o -fopenmp 2025-12-07T06:15:51,341 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/grammar/gr_extension_mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar/gr_extension_mfe.o -fopenmp 2025-12-07T06:15:51,705 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/grammar/gr_extension_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar/gr_extension_pf.o -fopenmp 2025-12-07T06:15:52,069 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/grammar/grammar.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar/grammar.o -fopenmp 2025-12-07T06:15:52,704 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/heat_capacity.o -fopenmp 2025-12-07T06:15:53,078 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/inverse/inverse.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse/inverse.o -fopenmp 2025-12-07T06:15:53,315 src/ViennaRNA/inverse/inverse.c: In function ‘adaptive_walk’: 2025-12-07T06:15:53,315 src/ViennaRNA/inverse/inverse.c:118:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:15:53,316 118 | if (strlen(target) != len) { 2025-12-07T06:15:53,317 | ^~ 2025-12-07T06:15:53,322 src/ViennaRNA/inverse/inverse.c: In function ‘make_ptable’: 2025-12-07T06:15:53,322 src/ViennaRNA/inverse/inverse.c:346:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:15:53,323 346 | for (i = 0; i < strlen(structure); i++) { 2025-12-07T06:15:53,324 | ^ 2025-12-07T06:15:53,324 src/ViennaRNA/inverse/inverse.c: In function ‘inverse_fold’: 2025-12-07T06:15:53,325 src/ViennaRNA/inverse/inverse.c:401:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:15:53,326 401 | if (strlen(start) != len) { 2025-12-07T06:15:53,326 | ^~ 2025-12-07T06:15:53,329 src/ViennaRNA/inverse/inverse.c: In function ‘make_start’: 2025-12-07T06:15:53,329 src/ViennaRNA/inverse/inverse.c:525:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:15:53,330 525 | for (i = 0; i < strlen(start); i++) 2025-12-07T06:15:53,330 | ^ 2025-12-07T06:15:53,331 src/ViennaRNA/inverse/inverse.c:527:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:15:53,332 527 | for (i = 0; i < strlen(symbolset); i++) 2025-12-07T06:15:53,332 | ^ 2025-12-07T06:15:54,221 src/ViennaRNA/inverse/inverse.c: In function ‘inverse_fold’: 2025-12-07T06:15:54,222 src/ViennaRNA/inverse/inverse.c:378:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2025-12-07T06:15:54,222 378 | strncpy(wstruct, structure + i, j - i + 1); \ 2025-12-07T06:15:54,223 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:15:54,224 src/ViennaRNA/inverse/inverse.c:434:7: note: in expansion of macro ‘WALK’ 2025-12-07T06:15:54,225 434 | WALK(0, len - 1); 2025-12-07T06:15:54,225 | ^~~~ 2025-12-07T06:15:54,226 src/ViennaRNA/inverse/inverse.c:400:9: note: length computed here 2025-12-07T06:15:54,226 400 | len = strlen(structure); 2025-12-07T06:15:54,227 | ^~~~~~~~~~~~~~~~~ 2025-12-07T06:15:54,466 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/commands.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/commands.o -fopenmp 2025-12-07T06:15:54,701 src/ViennaRNA/io/commands.c: In function ‘parse_constraints_line’: 2025-12-07T06:15:54,701 src/ViennaRNA/io/commands.c:818:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,702 818 | (sscanf(line + pos, "%15s%ln", &buf[0], &pp) == 1)) { 2025-12-07T06:15:54,703 | ~~^ ~~~ 2025-12-07T06:15:54,703 | | | 2025-12-07T06:15:54,704 | long int * size_t * {aka unsigned int *} 2025-12-07T06:15:54,705 | %n 2025-12-07T06:15:54,705 src/ViennaRNA/io/commands.c:822:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 5 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,706 822 | if (sscanf(buf, "%d-%d%ln", &v1, &v2, &pp) == 2) { 2025-12-07T06:15:54,707 | ~~^ ~~~ 2025-12-07T06:15:54,707 | | | 2025-12-07T06:15:54,708 | long int * size_t * {aka unsigned int *} 2025-12-07T06:15:54,709 | %n 2025-12-07T06:15:54,710 src/ViennaRNA/io/commands.c:830:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,710 830 | } else if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-07T06:15:54,711 | ~~^ ~~~ 2025-12-07T06:15:54,712 | | | 2025-12-07T06:15:54,712 | | size_t * {aka unsigned int *} 2025-12-07T06:15:54,713 | long int * 2025-12-07T06:15:54,713 | %n 2025-12-07T06:15:54,714 src/ViennaRNA/io/commands.c:840:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 5 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,715 840 | if (sscanf(buf, "%d-%d%ln", &v1, &v2, &pp) == 2) { 2025-12-07T06:15:54,716 | ~~^ ~~~ 2025-12-07T06:15:54,717 | | | 2025-12-07T06:15:54,718 | long int * size_t * {aka unsigned int *} 2025-12-07T06:15:54,718 | %n 2025-12-07T06:15:54,719 src/ViennaRNA/io/commands.c:851:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,719 851 | if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-07T06:15:54,720 | ~~^ ~~~ 2025-12-07T06:15:54,721 | | | 2025-12-07T06:15:54,722 | | size_t * {aka unsigned int *} 2025-12-07T06:15:54,722 | long int * 2025-12-07T06:15:54,723 | %n 2025-12-07T06:15:54,724 src/ViennaRNA/io/commands.c:857:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,724 857 | } else if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-07T06:15:54,725 | ~~^ ~~~ 2025-12-07T06:15:54,726 | | | 2025-12-07T06:15:54,726 | | size_t * {aka unsigned int *} 2025-12-07T06:15:54,727 | long int * 2025-12-07T06:15:54,728 | %n 2025-12-07T06:15:54,729 src/ViennaRNA/io/commands.c:869:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,729 869 | if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-07T06:15:54,730 | ~~^ ~~~ 2025-12-07T06:15:54,731 | | | 2025-12-07T06:15:54,731 | | size_t * {aka unsigned int *} 2025-12-07T06:15:54,732 | long int * 2025-12-07T06:15:54,733 | %n 2025-12-07T06:15:54,733 src/ViennaRNA/io/commands.c:886:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,734 886 | if (sscanf(buf, "%g%ln", &energy, &pp) == 1) { 2025-12-07T06:15:54,735 | ~~^ ~~~ 2025-12-07T06:15:54,736 | | | 2025-12-07T06:15:54,736 | long int * size_t * {aka unsigned int *} 2025-12-07T06:15:54,737 | %n 2025-12-07T06:15:54,738 src/ViennaRNA/io/commands.c:894:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-07T06:15:54,738 894 | if (sscanf(buf, "%8s%ln", &buf2[0], &pp) == 1) { 2025-12-07T06:15:54,739 | ~~^ ~~~ 2025-12-07T06:15:54,739 | | | 2025-12-07T06:15:54,740 | long int * size_t * {aka unsigned int *} 2025-12-07T06:15:54,740 | %n 2025-12-07T06:15:55,419 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats.o -fopenmp 2025-12-07T06:15:55,652 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2025-12-07T06:15:55,652 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:15:55,653 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2025-12-07T06:15:55,654 | ^ 2025-12-07T06:15:55,661 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2025-12-07T06:15:55,662 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:15:55,663 600 | if ((length > 0) && (r - 1 == length)) 2025-12-07T06:15:55,664 | ^~ 2025-12-07T06:15:55,678 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2025-12-07T06:15:55,680 src/ViennaRNA/io/file_formats.c:974:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:15:55,680 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-07T06:15:55,681 | ^~~~ 2025-12-07T06:15:56,502 src/ViennaRNA/io/file_formats.c:1111:12: warning: ‘tok6’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:15:56,502 1111 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2025-12-07T06:15:56,503 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:15:56,503 src/ViennaRNA/io/file_formats.c:974:41: note: ‘tok6’ was declared here 2025-12-07T06:15:56,504 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-07T06:15:56,504 | ^~~~ 2025-12-07T06:15:56,505 src/ViennaRNA/io/file_formats.c:1111:12: warning: ‘tok5’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:15:56,505 1111 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2025-12-07T06:15:56,506 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:15:56,507 src/ViennaRNA/io/file_formats.c:974:35: note: ‘tok5’ was declared here 2025-12-07T06:15:56,507 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-07T06:15:56,508 | ^~~~ 2025-12-07T06:15:56,508 In function ‘process_ct_nt_line’, 2025-12-07T06:15:56,509 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1111:12: 2025-12-07T06:15:56,509 src/ViennaRNA/io/file_formats.c:1291:22: warning: ‘tok3’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:15:56,510 1291 | (predecessor == 0)) { 2025-12-07T06:15:56,511 | ~~~~~~~~~~~~~^~~~~ 2025-12-07T06:15:56,511 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2025-12-07T06:15:56,512 src/ViennaRNA/io/file_formats.c:974:23: note: ‘tok3’ was declared here 2025-12-07T06:15:56,512 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-07T06:15:56,512 | ^~~~ 2025-12-07T06:15:56,513 In function ‘process_ct_nt_line’, 2025-12-07T06:15:56,514 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1111:12: 2025-12-07T06:15:56,514 src/ViennaRNA/io/file_formats.c:1297:43: warning: ‘tok2’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:15:56,515 1297 | data->sequence[data->sequence_pos++] = nucleotide; 2025-12-07T06:15:56,515 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:15:56,516 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2025-12-07T06:15:56,516 src/ViennaRNA/io/file_formats.c:971:33: note: ‘tok2’ was declared here 2025-12-07T06:15:56,517 971 | char c, *line, *end, tok2, **tok, **ptr; 2025-12-07T06:15:56,517 | ^~~~ 2025-12-07T06:15:56,754 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2025-12-07T06:15:56,991 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2025-12-07T06:15:56,991 src/ViennaRNA/io/file_formats_msa.c:654:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:15:56,992 654 | for (i = 0; i < strlen(tmp_seq); i++) 2025-12-07T06:15:56,993 | ^ 2025-12-07T06:15:56,998 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2025-12-07T06:15:56,999 src/ViennaRNA/io/file_formats_msa.c:903:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:15:57,000 903 | for (i = 0; i < strlen(seq); i++) 2025-12-07T06:15:57,000 | ^ 2025-12-07T06:15:57,904 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/io_utils.o -fopenmp 2025-12-07T06:15:58,281 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/sanitize.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/sanitize.o -fopenmp 2025-12-07T06:15:58,490 src/ViennaRNA/io/sanitize.c: In function ‘sanitize_input’: 2025-12-07T06:15:58,491 src/ViennaRNA/io/sanitize.c:570:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:15:58,491 570 | if ((j == 0) && (i >= hpos) && (i < (hpos + injector_len))) { 2025-12-07T06:15:58,492 | ^ 2025-12-07T06:15:58,493 src/ViennaRNA/io/sanitize.c:706:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:15:58,494 706 | if (hpos < (79 - injector_len)) 2025-12-07T06:15:58,494 | ^ 2025-12-07T06:16:01,503 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/findpath.o -fopenmp 2025-12-07T06:16:02,335 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/local_neighbors.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/local_neighbors.o -fopenmp 2025-12-07T06:16:02,478 src/ViennaRNA/landscape/local_neighbors.c: In function ‘insertions’: 2025-12-07T06:16:02,479 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,480 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,480 | ^ 2025-12-07T06:16:02,481 src/ViennaRNA/landscape/local_neighbors.c:351:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,482 351 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2025-12-07T06:16:02,482 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,483 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,484 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,484 | ^ 2025-12-07T06:16:02,485 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,485 27 | } else { code } \ 2025-12-07T06:16:02,486 | ^~~~ 2025-12-07T06:16:02,487 src/ViennaRNA/landscape/local_neighbors.c:352:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,487 352 | FOR_UNPAIRED(pt, j, j = i + 1, j <= last_j, j++, { 2025-12-07T06:16:02,488 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,488 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,489 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,490 | ^ 2025-12-07T06:16:02,490 src/ViennaRNA/landscape/local_neighbors.c:358:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,491 358 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2025-12-07T06:16:02,492 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,493 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,493 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,494 | ^ 2025-12-07T06:16:02,495 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,495 27 | } else { code } \ 2025-12-07T06:16:02,496 | ^~~~ 2025-12-07T06:16:02,496 src/ViennaRNA/landscape/local_neighbors.c:359:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,497 359 | FOR_UNPAIRED(pt, j, j = first_j, j <= last_j, j++, { 2025-12-07T06:16:02,497 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,497 src/ViennaRNA/landscape/local_neighbors.c: In function ‘deletion_range’: 2025-12-07T06:16:02,498 src/ViennaRNA/landscape/local_neighbors.c:32:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,499 32 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,499 | ^ 2025-12-07T06:16:02,500 src/ViennaRNA/landscape/local_neighbors.c:379:3: note: in expansion of macro ‘FOR_PAIRED’ 2025-12-07T06:16:02,500 379 | FOR_PAIRED(pt, i, i = start, i <= stop, i++, { 2025-12-07T06:16:02,501 | ^~~~~~~~~~ 2025-12-07T06:16:02,501 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_pos’: 2025-12-07T06:16:02,501 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,502 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,502 | ^ 2025-12-07T06:16:02,503 src/ViennaRNA/landscape/local_neighbors.c:398:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,504 398 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-07T06:16:02,504 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,505 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,506 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,506 | ^ 2025-12-07T06:16:02,507 src/ViennaRNA/landscape/local_neighbors.c:403:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,508 403 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-07T06:16:02,508 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,509 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_both’: 2025-12-07T06:16:02,510 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,511 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,511 | ^ 2025-12-07T06:16:02,512 src/ViennaRNA/landscape/local_neighbors.c:425:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,512 425 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-07T06:16:02,513 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,514 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,514 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,515 | ^ 2025-12-07T06:16:02,515 src/ViennaRNA/landscape/local_neighbors.c:433:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,516 433 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-07T06:16:02,517 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,517 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:02,518 25 | if (ptable[idx] > idx) { \ 2025-12-07T06:16:02,519 | ^ 2025-12-07T06:16:02,520 src/ViennaRNA/landscape/local_neighbors.c:441:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-07T06:16:02,520 441 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-07T06:16:02,521 | ^~~~~~~~~~~~ 2025-12-07T06:16:02,521 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_insertion’: 2025-12-07T06:16:02,522 src/ViennaRNA/landscape/local_neighbors.c:463:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-07T06:16:02,522 463 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-07T06:16:02,523 | ^~~~~~~~~~~~~ 2025-12-07T06:16:02,523 src/ViennaRNA/landscape/local_neighbors.c:462:23: warning: unused variable ‘k’ [-Wunused-variable] 2025-12-07T06:16:02,524 462 | int i, j, k, mi, mj, enc5, enc3; 2025-12-07T06:16:02,524 | ^ 2025-12-07T06:16:02,525 src/ViennaRNA/landscape/local_neighbors.c:462:20: warning: unused variable ‘j’ [-Wunused-variable] 2025-12-07T06:16:02,525 462 | int i, j, k, mi, mj, enc5, enc3; 2025-12-07T06:16:02,526 | ^ 2025-12-07T06:16:02,526 src/ViennaRNA/landscape/local_neighbors.c:461:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-07T06:16:02,527 461 | unsigned int n = fc->length; 2025-12-07T06:16:02,527 | ^ 2025-12-07T06:16:02,528 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_deletion’: 2025-12-07T06:16:02,528 src/ViennaRNA/landscape/local_neighbors.c:578:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-07T06:16:02,528 578 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-07T06:16:02,529 | ^~~~~~~~~~~~~ 2025-12-07T06:16:02,530 src/ViennaRNA/landscape/local_neighbors.c:577:23: warning: unused variable ‘k’ [-Wunused-variable] 2025-12-07T06:16:02,530 577 | int i, j, k, enc5, enc3; 2025-12-07T06:16:02,531 | ^ 2025-12-07T06:16:02,531 src/ViennaRNA/landscape/local_neighbors.c:577:20: warning: unused variable ‘j’ [-Wunused-variable] 2025-12-07T06:16:02,532 577 | int i, j, k, enc5, enc3; 2025-12-07T06:16:02,533 | ^ 2025-12-07T06:16:02,533 src/ViennaRNA/landscape/local_neighbors.c:576:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-07T06:16:02,534 576 | unsigned int n = fc->length; 2025-12-07T06:16:02,534 | ^ 2025-12-07T06:16:02,535 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_insertion’: 2025-12-07T06:16:02,536 src/ViennaRNA/landscape/local_neighbors.c:970:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-07T06:16:02,536 970 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-07T06:16:02,537 | ^~~~~~~~~~~~~ 2025-12-07T06:16:02,537 src/ViennaRNA/landscape/local_neighbors.c:968:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-07T06:16:02,538 968 | unsigned int n = fc->length; 2025-12-07T06:16:02,539 | ^ 2025-12-07T06:16:02,539 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_deletion’: 2025-12-07T06:16:02,540 src/ViennaRNA/landscape/local_neighbors.c:1073:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-07T06:16:02,541 1073 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-07T06:16:02,541 | ^~~~~~~~~~~~~ 2025-12-07T06:16:02,542 src/ViennaRNA/landscape/local_neighbors.c:1072:20: warning: unused variable ‘j’ [-Wunused-variable] 2025-12-07T06:16:02,543 1072 | int i, j, enc5, enc3; 2025-12-07T06:16:02,544 | ^ 2025-12-07T06:16:02,545 src/ViennaRNA/landscape/local_neighbors.c:1072:17: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:16:02,545 1072 | int i, j, enc5, enc3; 2025-12-07T06:16:02,546 | ^ 2025-12-07T06:16:02,546 src/ViennaRNA/landscape/local_neighbors.c:1071:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-07T06:16:02,547 1071 | unsigned int n = fc->length; 2025-12-07T06:16:02,547 | ^ 2025-12-07T06:16:02,548 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_shift’: 2025-12-07T06:16:02,548 src/ViennaRNA/landscape/local_neighbors.c:1100:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-07T06:16:02,549 1100 | unsigned int n = fc->length; 2025-12-07T06:16:02,549 | ^ 2025-12-07T06:16:05,524 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/move.o -fopenmp 2025-12-07T06:16:05,871 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/neighbor.o -fopenmp 2025-12-07T06:16:06,064 In file included from src/ViennaRNA/pair_mat.h:5, 2025-12-07T06:16:06,065 from src/ViennaRNA/landscape/neighbor.c:6: 2025-12-07T06:16:06,065 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2025-12-07T06:16:06,066 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:16:06,067 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:16:06,067 | ^ 2025-12-07T06:16:06,068 src/ViennaRNA/landscape/neighbor.c:373:17: note: in expansion of macro ‘MIN2’ 2025-12-07T06:16:06,069 373 | int length = MIN2(vc->length + 1, end); 2025-12-07T06:16:06,070 | ^~~~ 2025-12-07T06:16:06,070 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:16:06,071 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:16:06,071 | ^~~ 2025-12-07T06:16:06,072 src/ViennaRNA/landscape/neighbor.c:373:17: note: in expansion of macro ‘MIN2’ 2025-12-07T06:16:06,072 373 | int length = MIN2(vc->length + 1, end); 2025-12-07T06:16:06,073 | ^~~~ 2025-12-07T06:16:06,074 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2025-12-07T06:16:06,075 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:16:06,075 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:16:06,076 | ^ 2025-12-07T06:16:06,077 src/ViennaRNA/landscape/neighbor.c:501:17: note: in expansion of macro ‘MIN2’ 2025-12-07T06:16:06,077 501 | int length = MIN2(vc->length, end); 2025-12-07T06:16:06,078 | ^~~~ 2025-12-07T06:16:06,079 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:16:06,079 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:16:06,080 | ^~~ 2025-12-07T06:16:06,080 src/ViennaRNA/landscape/neighbor.c:501:17: note: in expansion of macro ‘MIN2’ 2025-12-07T06:16:06,081 501 | int length = MIN2(vc->length, end); 2025-12-07T06:16:06,081 | ^~~~ 2025-12-07T06:16:06,098 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2025-12-07T06:16:06,100 src/ViennaRNA/landscape/neighbor.c:1720:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:16:06,100 1720 | while (j <= length && pt[j] > j) // '(' 2025-12-07T06:16:06,101 | ^~ 2025-12-07T06:16:06,103 src/ViennaRNA/landscape/neighbor.c:1722:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:16:06,103 1722 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2025-12-07T06:16:06,104 | ^ 2025-12-07T06:16:06,105 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2025-12-07T06:16:06,106 src/ViennaRNA/landscape/neighbor.c:1750:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:06,107 1750 | for (i = 1; i <= vc->length; i++) 2025-12-07T06:16:06,108 | ^~ 2025-12-07T06:16:06,110 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2025-12-07T06:16:06,112 src/ViennaRNA/landscape/neighbor.c:1835:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:06,112 1835 | for (i = 1; i <= vc->length; i++) 2025-12-07T06:16:06,113 | ^~ 2025-12-07T06:16:06,115 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2025-12-07T06:16:06,117 src/ViennaRNA/landscape/neighbor.c:1916:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:06,118 1916 | for (i = 1; i <= vc->length; i++) 2025-12-07T06:16:06,118 | ^~ 2025-12-07T06:16:06,120 src/ViennaRNA/landscape/neighbor.c:1928:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:06,121 1928 | if (j < vc->length) { 2025-12-07T06:16:06,122 | ^ 2025-12-07T06:16:06,122 src/ViennaRNA/landscape/neighbor.c:1930:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:06,123 1930 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2025-12-07T06:16:06,124 | ^ 2025-12-07T06:16:08,208 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/walk.o -fopenmp 2025-12-07T06:16:08,396 src/ViennaRNA/landscape/walk.c:141:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2025-12-07T06:16:08,397 141 | isShift(vrna_move_t *m) 2025-12-07T06:16:08,398 | ^~~~~~~ 2025-12-07T06:16:08,399 In file included from src/ViennaRNA/landscape/walk.c:25: 2025-12-07T06:16:08,399 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2025-12-07T06:16:08,400 70 | free_incremental_movelist(struct movelist *m) 2025-12-07T06:16:08,400 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:16:08,401 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2025-12-07T06:16:08,401 52 | init_incremental_movelist(unsigned int n) 2025-12-07T06:16:08,402 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:16:08,402 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2025-12-07T06:16:08,403 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2025-12-07T06:16:08,404 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:16:08,827 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_bin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_bin.o -fopenmp 2025-12-07T06:16:09,117 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_gaussian.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_gaussian.o -fopenmp 2025-12-07T06:16:09,404 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_kde.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_kde.o -fopenmp 2025-12-07T06:16:09,655 src/ViennaRNA/math/fun_kde.c: In function ‘vrna_math_fun_dbl_kde’: 2025-12-07T06:16:09,655 src/ViennaRNA/math/fun_kde.c:138:10: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:16:09,656 138 | double result = 0.; 2025-12-07T06:16:09,657 | ^~~~~~ 2025-12-07T06:16:09,659 src/ViennaRNA/math/fun_kde.c: In function ‘gaussian_bandwidth_default’: 2025-12-07T06:16:09,660 src/ViennaRNA/math/fun_kde.c:236:14: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:16:09,661 236 | size_t i, count; 2025-12-07T06:16:09,662 | ^~~~~ 2025-12-07T06:16:09,836 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_linear.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_linear.o -fopenmp 2025-12-07T06:16:10,125 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_log.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_log.o -fopenmp 2025-12-07T06:16:10,456 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_logistic.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_logistic.o -fopenmp 2025-12-07T06:16:10,741 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/Lfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/Lfold.o -fopenmp 2025-12-07T06:16:10,974 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/alifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/alifold.o -fopenmp 2025-12-07T06:16:11,443 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/cofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/cofold.o -fopenmp 2025-12-07T06:16:11,833 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/fold.o -fopenmp 2025-12-07T06:16:12,583 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe.o -fopenmp 2025-12-07T06:16:12,894 src/ViennaRNA/mfe/mfe.c: In function ‘fill_arrays’: 2025-12-07T06:16:12,895 src/ViennaRNA/mfe/mfe.c:424:35: warning: variable ‘uniq_ML’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:16:12,896 424 | unsigned int i, j, length, uniq_ML; 2025-12-07T06:16:12,897 | ^~~~~~~ 2025-12-07T06:16:25,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_exterior.o -fopenmp 2025-12-07T06:16:27,918 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_exterior_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_exterior_window.o -fopenmp 2025-12-07T06:16:30,667 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_gquad.o -fopenmp 2025-12-07T06:16:32,390 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_internal.o -fopenmp 2025-12-07T06:16:32,650 src/ViennaRNA/mfe/mfe_internal.c: In function ‘mfe_stacks’: 2025-12-07T06:16:32,651 src/ViennaRNA/mfe/mfe_internal.c:166:38: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:16:32,652 166 | unsigned int k, l, *sn, n_seq, s, n, type, type2; 2025-12-07T06:16:32,653 | ^ 2025-12-07T06:16:32,654 src/ViennaRNA/mfe/mfe_internal.c:166:24: warning: variable ‘sn’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:16:32,654 166 | unsigned int k, l, *sn, n_seq, s, n, type, type2; 2025-12-07T06:16:32,655 | ^~ 2025-12-07T06:16:36,128 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_multibranch.o -fopenmp 2025-12-07T06:16:40,679 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_window.o -fopenmp 2025-12-07T06:16:40,982 src/ViennaRNA/mfe/mfe_window.c: In function ‘print_block_list’: 2025-12-07T06:16:40,986 src/ViennaRNA/mfe/mfe_window.c:1635:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-12-07T06:16:40,987 1635 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2025-12-07T06:16:40,987 | ~~^ 2025-12-07T06:16:40,988 | | 2025-12-07T06:16:40,989 | long unsigned int 2025-12-07T06:16:40,989 | %u 2025-12-07T06:16:40,990 1636 | cnt, 2025-12-07T06:16:40,990 | ~~~ 2025-12-07T06:16:40,991 | | 2025-12-07T06:16:40,992 | size_t {aka unsigned int} 2025-12-07T06:16:40,993 src/ViennaRNA/mfe/mfe_window.c:1641:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-12-07T06:16:40,993 1641 | printf("%lu blocks remaining\n", cnt); 2025-12-07T06:16:40,994 | ~~^ ~~~ 2025-12-07T06:16:40,995 | | | 2025-12-07T06:16:40,997 | long unsigned int size_t {aka unsigned int} 2025-12-07T06:16:40,998 | %u 2025-12-07T06:16:42,858 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_window_wrappers.o -fopenmp 2025-12-07T06:16:43,108 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_wrappers.o -fopenmp 2025-12-07T06:16:43,406 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mm.o -fopenmp 2025-12-07T06:16:43,637 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2025-12-07T06:16:43,637 src/ViennaRNA/mm.c:187:58: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:16:43,638 187 | if ((unsigned int)ptable[l] != j && ptable2[l] != j) 2025-12-07T06:16:43,639 | ^~ 2025-12-07T06:16:44,314 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/model.o -fopenmp 2025-12-07T06:16:45,352 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/move_set.o -fopenmp 2025-12-07T06:16:47,484 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/convert.o -fopenmp 2025-12-07T06:16:48,262 In file included from src/ViennaRNA/params/convert.c:28: 2025-12-07T06:16:48,263 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2025-12-07T06:16:48,263 100 | PRIVATE int oldinternal_loop37_184[31] = { 2025-12-07T06:16:48,264 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:16:48,265 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2025-12-07T06:16:48,265 90 | PRIVATE int oldbulge37_184[31] = { 2025-12-07T06:16:48,266 | ^~~~~~~~~~~~~~ 2025-12-07T06:16:48,267 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2025-12-07T06:16:48,267 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2025-12-07T06:16:48,268 | ^~~~~~~~~~~~~~~~ 2025-12-07T06:16:48,269 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2025-12-07T06:16:48,269 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2025-12-07T06:16:48,270 | ^~~~~~~~~~~~ 2025-12-07T06:16:49,245 In function ‘write_new_parameter_file’, 2025-12-07T06:16:49,246 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:173:3: 2025-12-07T06:16:49,247 src/ViennaRNA/params/convert.c:1168:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2025-12-07T06:16:49,247 1168 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2025-12-07T06:16:49,248 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:16:49,249 src/ViennaRNA/params/convert.c:1147:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2025-12-07T06:16:49,250 1147 | strncpy(bla, Triloops_184 + c * 6, 5); 2025-12-07T06:16:49,250 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:16:50,646 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/default.o -fopenmp 2025-12-07T06:16:51,557 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/io.o -fopenmp 2025-12-07T06:17:05,043 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/params.o -fopenmp 2025-12-07T06:17:08,325 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/ribosum.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/ribosum.o -fopenmp 2025-12-07T06:17:10,013 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/salt.o -fopenmp 2025-12-07T06:17:10,430 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/special_const.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/special_const.o -fopenmp 2025-12-07T06:17:10,524 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/alipfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/alipfold.o -fopenmp 2025-12-07T06:17:11,039 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/part_func_co.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/part_func_co.o -fopenmp 2025-12-07T06:17:11,586 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/part_func_up.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/part_func_up.o -fopenmp 2025-12-07T06:17:11,860 src/ViennaRNA/partfunc/part_func_up.c: In function ‘free_pu_contrib_struct’: 2025-12-07T06:17:11,861 src/ViennaRNA/partfunc/part_func_up.c:236:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:11,862 236 | for (i = 0; i <= pu->length; i++) { 2025-12-07T06:17:11,862 | ^~ 2025-12-07T06:17:11,863 src/ViennaRNA/partfunc/part_func_up.c: In function ‘pf_unstru’: 2025-12-07T06:17:11,864 src/ViennaRNA/partfunc/part_func_up.c:284:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:11,864 284 | for (i = 0; i < size; i++) 2025-12-07T06:17:11,865 | ^ 2025-12-07T06:17:14,502 src/ViennaRNA/partfunc/part_func_up.c: In function ‘pf_interact’: 2025-12-07T06:17:14,503 src/ViennaRNA/partfunc/part_func_up.c:943:69: warning: ‘p_c2_S’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:14,503 943 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2025-12-07T06:17:14,504 | ^ 2025-12-07T06:17:14,505 src/ViennaRNA/partfunc/part_func_up.c:608:49: note: ‘p_c2_S’ was declared here 2025-12-07T06:17:14,506 608 | double temp, Z, rev_d, E, Z2, **p_c_S, **p_c2_S, int_scale; 2025-12-07T06:17:14,506 | ^~~~~~ 2025-12-07T06:17:15,612 src/ViennaRNA/partfunc/part_func_up.c: In function ‘Up_plot’: 2025-12-07T06:17:15,613 src/ViennaRNA/partfunc/part_func_up.c:1665:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:15,614 1665 | return ret; 2025-12-07T06:17:15,614 | ^~~ 2025-12-07T06:17:15,615 src/ViennaRNA/partfunc/part_func_up.c:1637:11: note: ‘ret’ was declared here 2025-12-07T06:17:15,616 1637 | int ret; 2025-12-07T06:17:15,616 | ^~~ 2025-12-07T06:17:15,750 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/partfunc.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/partfunc.o -fopenmp 2025-12-07T06:17:22,294 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_exterior.o -fopenmp 2025-12-07T06:17:22,549 src/ViennaRNA/partfunc/pf_exterior.c: In function ‘exp_E_ext_fast’: 2025-12-07T06:17:22,550 src/ViennaRNA/partfunc/pf_exterior.c:564:30: warning: variable ‘hc’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:22,551 564 | vrna_hc_t *hc; 2025-12-07T06:17:22,552 | ^~ 2025-12-07T06:17:23,644 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_fold.o -fopenmp 2025-12-07T06:17:24,425 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_gquad.o -fopenmp 2025-12-07T06:17:24,658 src/ViennaRNA/partfunc/pf_gquad.c: In function ‘get_plist_gquad_from_pr_max’: 2025-12-07T06:17:24,659 src/ViennaRNA/partfunc/pf_gquad.c:639:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:24,659 639 | for (i = gi; i < gj; i++) { 2025-12-07T06:17:24,660 | ^ 2025-12-07T06:17:24,661 src/ViennaRNA/partfunc/pf_gquad.c:640:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:24,661 640 | for (j = i; j <= gj; j++) { 2025-12-07T06:17:24,662 | ^~ 2025-12-07T06:17:24,663 src/ViennaRNA/partfunc/pf_gquad.c: In function ‘vrna_plist_gquad_from_pr_max’: 2025-12-07T06:17:24,663 src/ViennaRNA/partfunc/pf_gquad.c:792:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:24,664 792 | for (i = gi; i < gj; i++) { 2025-12-07T06:17:24,665 | ^ 2025-12-07T06:17:24,666 src/ViennaRNA/partfunc/pf_gquad.c:793:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:24,666 793 | for (j = i; j <= gj; j++) { 2025-12-07T06:17:24,667 | ^~ 2025-12-07T06:17:26,104 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_internal.o -fopenmp 2025-12-07T06:17:29,826 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_multibranch.o -fopenmp 2025-12-07T06:17:31,638 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_multifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_multifold.o -fopenmp 2025-12-07T06:17:31,903 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_window.o -fopenmp 2025-12-07T06:17:32,182 src/ViennaRNA/partfunc/pf_window.c: In function ‘compute_probs’: 2025-12-07T06:17:32,183 src/ViennaRNA/partfunc/pf_window.c:1170:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:32,184 1170 | if (max_m > l + MAXLOOP - u1 + 1) 2025-12-07T06:17:32,184 | ^ 2025-12-07T06:17:32,194 src/ViennaRNA/partfunc/pf_window.c: In function ‘compute_pU’: 2025-12-07T06:17:32,195 src/ViennaRNA/partfunc/pf_window.c:1622:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,195 1622 | if ((hc->up_ml[k + 1] >= j3 - k - 1) && (i5 < k)) { 2025-12-07T06:17:32,196 | ^~ 2025-12-07T06:17:32,197 src/ViennaRNA/partfunc/pf_window.c:1637:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,198 1637 | if ((hc->up_ml[i5 + 1] >= k + ulength - i5) && (j3 - 1 > k + ulength)) { 2025-12-07T06:17:32,198 | ^~ 2025-12-07T06:17:32,199 src/ViennaRNA/partfunc/pf_window.c:1653:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,200 1653 | if ((hc->up_ml[k + 1] >= ulength) && (i5 < k) && (j3 - 1 > k + ulength)) { 2025-12-07T06:17:32,201 | ^~ 2025-12-07T06:17:32,205 src/ViennaRNA/partfunc/pf_window.c:1738:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,206 1738 | if (hc->up_ml[k + 1] >= len) { 2025-12-07T06:17:32,206 | ^~ 2025-12-07T06:17:32,207 src/ViennaRNA/partfunc/pf_window.c:1745:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,208 1745 | if (hc->up_ml[k + 1] >= len) { 2025-12-07T06:17:32,209 | ^~ 2025-12-07T06:17:32,209 src/ViennaRNA/partfunc/pf_window.c:1756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,210 1756 | if (hc->up_ml[k + 1] >= len) 2025-12-07T06:17:32,210 | ^~ 2025-12-07T06:17:32,211 src/ViennaRNA/partfunc/pf_window.c:1761:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,212 1761 | if (hc->up_ml[k + 1] >= len) 2025-12-07T06:17:32,212 | ^~ 2025-12-07T06:17:32,213 src/ViennaRNA/partfunc/pf_window.c:1772:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,214 1772 | if (hc->up_ml[k + 1] >= len) { 2025-12-07T06:17:32,215 | ^~ 2025-12-07T06:17:32,216 src/ViennaRNA/partfunc/pf_window.c:1790:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,217 1790 | if (hc->up_ml[k + 1] >= len) { 2025-12-07T06:17:32,218 | ^~ 2025-12-07T06:17:32,221 src/ViennaRNA/partfunc/pf_window.c:1836:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,221 1836 | (hc->up_ext[k - winSize + 1] >= winSize)) 2025-12-07T06:17:32,222 | ^~ 2025-12-07T06:17:32,222 src/ViennaRNA/partfunc/pf_window.c:1843:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,223 1843 | (hc->up_ext[k - winSize + 1] >= winSize)) { 2025-12-07T06:17:32,223 | ^~ 2025-12-07T06:17:32,226 src/ViennaRNA/partfunc/pf_window.c:1865:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,226 1865 | if (hc->up_ext[k - startu + 1] >= startu) { 2025-12-07T06:17:32,227 | ^~ 2025-12-07T06:17:32,230 src/ViennaRNA/partfunc/pf_window.c:1890:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:32,231 1890 | if (hc->up_ext[k - startu + 1] >= startu) { 2025-12-07T06:17:32,231 | ^~ 2025-12-07T06:17:35,542 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_wrappers.o -fopenmp 2025-12-07T06:17:35,845 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/perturbation_fold.o -fopenmp 2025-12-07T06:17:36,554 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex.o -fopenmp 2025-12-07T06:17:36,822 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2025-12-07T06:17:36,823 src/ViennaRNA/plex.c:441:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,823 441 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2025-12-07T06:17:36,824 | ^~~~~~~ 2025-12-07T06:17:36,842 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2025-12-07T06:17:36,843 src/ViennaRNA/plex.c:784:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2025-12-07T06:17:36,844 784 | int jdiff = j_pos + j - 11; 2025-12-07T06:17:36,844 | ^~~~~ 2025-12-07T06:17:36,846 src/ViennaRNA/plex.c:1035:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,847 1035 | int endy; 2025-12-07T06:17:36,848 | ^~~~ 2025-12-07T06:17:36,849 src/ViennaRNA/plex.c:1033:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,849 1033 | int endx; 2025-12-07T06:17:36,850 | ^~~~ 2025-12-07T06:17:36,850 src/ViennaRNA/plex.c:642:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,851 642 | int maxPenalty[4]; 2025-12-07T06:17:36,852 | ^~~~~~~~~~ 2025-12-07T06:17:36,874 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2025-12-07T06:17:36,875 src/ViennaRNA/plex.c:1132:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,875 1132 | int maxPenalty[4]; 2025-12-07T06:17:36,876 | ^~~~~~~~~~ 2025-12-07T06:17:36,894 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2025-12-07T06:17:36,895 src/ViennaRNA/plex.c:1979:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,896 1979 | int maxPenalty[4]; 2025-12-07T06:17:36,897 | ^~~~~~~~~~ 2025-12-07T06:17:36,912 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2025-12-07T06:17:36,914 src/ViennaRNA/plex.c:2710:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,915 2710 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-07T06:17:36,916 | ^~ 2025-12-07T06:17:36,937 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2025-12-07T06:17:36,940 src/ViennaRNA/plex.c:2913:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:36,940 2913 | int i, j, Emin, i_min, j_min, l1; 2025-12-07T06:17:36,941 | ^~ 2025-12-07T06:17:38,603 src/ViennaRNA/plex.c:3246:16: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:38,603 3246 | j0 = MAX2(j - 1, 11); 2025-12-07T06:17:38,604 | ^ 2025-12-07T06:17:38,605 src/ViennaRNA/plex.c:2924:13: note: ‘max_pos_j’ was declared here 2025-12-07T06:17:38,606 2924 | int max_pos_j; 2025-12-07T06:17:38,607 | ^~~~~~~~~ 2025-12-07T06:17:38,607 In function ‘fbacktrack’, 2025-12-07T06:17:38,608 inlined from ‘fduplexfold’ at src/ViennaRNA/plex.c:3184:11: 2025-12-07T06:17:38,609 src/ViennaRNA/plex.c:3258:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:38,609 3258 | type = pair[S1[i]][S2[j]]; 2025-12-07T06:17:38,610 | ^ 2025-12-07T06:17:38,610 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2025-12-07T06:17:38,611 src/ViennaRNA/plex.c:2923:13: note: ‘max_pos’ was declared here 2025-12-07T06:17:38,612 2923 | int max_pos; /* get position of the best hit */ 2025-12-07T06:17:38,612 | ^~~~~~~ 2025-12-07T06:17:41,525 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2025-12-07T06:17:41,526 src/ViennaRNA/plex.c:1048:6: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:41,526 1048 | if (j_min > 11) 2025-12-07T06:17:41,527 | ^ 2025-12-07T06:17:41,528 src/ViennaRNA/plex.c:637:13: note: ‘max_pos_j’ was declared here 2025-12-07T06:17:41,528 637 | int max_pos_j; 2025-12-07T06:17:41,529 | ^~~~~~~~~ 2025-12-07T06:17:41,530 In function ‘fbacktrack_XS’, 2025-12-07T06:17:41,530 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:1013:11: 2025-12-07T06:17:41,531 src/ViennaRNA/plex.c:1159:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:41,532 1159 | type = pair[S1[i]][S2[j]]; 2025-12-07T06:17:41,533 | ^ 2025-12-07T06:17:41,534 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2025-12-07T06:17:41,534 src/ViennaRNA/plex.c:636:13: note: ‘max_pos’ was declared here 2025-12-07T06:17:41,535 636 | int max_pos; /* get position of the best hit */ 2025-12-07T06:17:41,535 | ^~~~~~~ 2025-12-07T06:17:41,536 In function ‘update_dfold_params’, 2025-12-07T06:17:41,536 inlined from ‘fbacktrack_XS’ at src/ViennaRNA/plex.c:1148:7, 2025-12-07T06:17:41,536 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:1013:11: 2025-12-07T06:17:41,537 src/ViennaRNA/plex.c:4536:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-07T06:17:41,538 4536 | free(P); 2025-12-07T06:17:41,538 | ^~~~~~~ 2025-12-07T06:17:41,538 In function ‘fbacktrack_XS’, 2025-12-07T06:17:41,539 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:1013:11: 2025-12-07T06:17:41,540 src/ViennaRNA/plex.c:1147:7: note: call to ‘free’ here 2025-12-07T06:17:41,540 1147 | free(P); 2025-12-07T06:17:41,541 | ^~~~~~~ 2025-12-07T06:17:43,653 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2025-12-07T06:17:43,655 src/ViennaRNA/plex.c:2364:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:43,656 2364 | position_j[i + delta] = min_j_colonne; 2025-12-07T06:17:43,656 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-07T06:17:43,657 src/ViennaRNA/plex.c:1975:13: note: ‘min_j_colonne’ was declared here 2025-12-07T06:17:43,657 1975 | int min_j_colonne; 2025-12-07T06:17:43,658 | ^~~~~~~~~~~~~ 2025-12-07T06:17:43,659 In function ‘update_dfold_params’, 2025-12-07T06:17:43,660 inlined from ‘Lduplexfold_XS’ at src/ViennaRNA/plex.c:2008:7: 2025-12-07T06:17:43,663 src/ViennaRNA/plex.c:4536:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-07T06:17:43,664 4536 | free(P); 2025-12-07T06:17:43,664 | ^~~~~~~ 2025-12-07T06:17:43,665 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2025-12-07T06:17:43,666 src/ViennaRNA/plex.c:2007:7: note: call to ‘free’ here 2025-12-07T06:17:43,667 2007 | free(P); 2025-12-07T06:17:43,667 | ^~~~~~~ 2025-12-07T06:17:44,842 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2025-12-07T06:17:44,845 src/ViennaRNA/plex.c:4170:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:44,846 4170 | position_j[i + delta] = min_j_colonne; 2025-12-07T06:17:44,846 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-07T06:17:44,849 src/ViennaRNA/plex.c:3862:13: note: ‘min_j_colonne’ was declared here 2025-12-07T06:17:44,850 3862 | int min_j_colonne; 2025-12-07T06:17:44,850 | ^~~~~~~~~~~~~ 2025-12-07T06:17:45,871 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex_functions.o -fopenmp 2025-12-07T06:17:46,123 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2025-12-07T06:17:46,124 src/ViennaRNA/plex_functions.c:274:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,125 274 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2025-12-07T06:17:46,125 | ^~ 2025-12-07T06:17:46,126 src/ViennaRNA/plex_functions.c:276:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,127 276 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2025-12-07T06:17:46,128 | ^~ 2025-12-07T06:17:46,128 src/ViennaRNA/plex_functions.c:308:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,129 308 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2025-12-07T06:17:46,129 | ^ 2025-12-07T06:17:46,130 src/ViennaRNA/plex_functions.c:312:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,130 312 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2025-12-07T06:17:46,131 | ^ 2025-12-07T06:17:46,132 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex_accessibility’: 2025-12-07T06:17:46,132 src/ViennaRNA/plex_functions.c:407:26: warning: unused variable ‘dpp’ [-Wunused-variable] 2025-12-07T06:17:46,133 407 | plist *dpp = NULL; 2025-12-07T06:17:46,133 | ^~~ 2025-12-07T06:17:46,134 src/ViennaRNA/plex_functions.c:406:32: warning: unused variable ‘kT’ [-Wunused-variable] 2025-12-07T06:17:46,134 406 | double **pup, kT; 2025-12-07T06:17:46,135 | ^~ 2025-12-07T06:17:46,135 src/ViennaRNA/plex_functions.c:406:27: warning: unused variable ‘pup’ [-Wunused-variable] 2025-12-07T06:17:46,136 406 | double **pup, kT; 2025-12-07T06:17:46,136 | ^~~ 2025-12-07T06:17:46,137 src/ViennaRNA/plex_functions.c:405:37: warning: variable ‘r’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:46,138 405 | int **a = NULL, r; 2025-12-07T06:17:46,138 | ^ 2025-12-07T06:17:46,139 src/ViennaRNA/plex_functions.c:405:27: warning: unused variable ‘a’ [-Wunused-variable] 2025-12-07T06:17:46,140 405 | int **a = NULL, r; 2025-12-07T06:17:46,140 | ^ 2025-12-07T06:17:46,141 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2025-12-07T06:17:46,142 src/ViennaRNA/plex_functions.c:588:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:46,142 588 | if (n > turn + 1) { 2025-12-07T06:17:46,143 | ^ 2025-12-07T06:17:46,144 src/ViennaRNA/plex_functions.c:600:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,145 600 | for (j = i + turn + 1; j <= n; j++) { 2025-12-07T06:17:46,145 | ^~ 2025-12-07T06:17:46,146 src/ViennaRNA/plex_functions.c:616:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,147 616 | for (l = i + turn + 1; l <= n; l++) { 2025-12-07T06:17:46,147 | ^~ 2025-12-07T06:17:46,148 src/ViennaRNA/plex_functions.c:665:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,150 665 | for (j = i + turn + 1; j <= n; j++) { 2025-12-07T06:17:46,151 | ^~ 2025-12-07T06:17:46,151 In file included from src/ViennaRNA/plex_functions.c:25: 2025-12-07T06:17:46,152 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:17:46,153 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:17:46,153 | ^ 2025-12-07T06:17:46,154 src/ViennaRNA/plex_functions.c:667:25: note: in expansion of macro ‘MIN2’ 2025-12-07T06:17:46,155 667 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2025-12-07T06:17:46,155 | ^~~~ 2025-12-07T06:17:46,156 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:17:46,156 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:17:46,157 | ^~~ 2025-12-07T06:17:46,157 src/ViennaRNA/plex_functions.c:667:25: note: in expansion of macro ‘MIN2’ 2025-12-07T06:17:46,158 667 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2025-12-07T06:17:46,158 | ^~~~ 2025-12-07T06:17:46,159 src/ViennaRNA/plex_functions.c:676:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:46,159 676 | sl = (l < n) ? S1[l + 1] : -1; 2025-12-07T06:17:46,160 | ^ 2025-12-07T06:17:47,318 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2025-12-07T06:17:47,494 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2025-12-07T06:17:47,495 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2025-12-07T06:17:47,496 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-07T06:17:47,496 446 | isToTheRightPointVector(const double *lineStart, 2025-12-07T06:17:47,497 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2025-12-07T06:17:47,498 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2025-12-07T06:17:47,498 102 | isToTheRightPointVector(const double lineStart[2], 2025-12-07T06:17:47,499 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:17:47,499 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:447:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-07T06:17:47,500 447 | const double *lineVector, 2025-12-07T06:17:47,501 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2025-12-07T06:17:47,501 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2025-12-07T06:17:47,502 103 | const double lineVector[2], 2025-12-07T06:17:47,503 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2025-12-07T06:17:47,503 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:448:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-07T06:17:47,504 448 | const double *point) 2025-12-07T06:17:47,504 | ~~~~~~~~~~~~~~~^~~~~ 2025-12-07T06:17:47,505 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2025-12-07T06:17:47,505 104 | const double point[2]); 2025-12-07T06:17:47,506 | ~~~~~~~~~~~~~~^~~~~~~~ 2025-12-07T06:17:47,507 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2025-12-07T06:17:47,508 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:47,508 799 | double alpha[3]; 2025-12-07T06:17:47,509 | ^~~~~ 2025-12-07T06:17:47,566 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2025-12-07T06:17:47,566 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2025-12-07T06:17:47,567 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,567 285 | char *fnName = "intersectLineArc"; 2025-12-07T06:17:47,568 | ^~~~~~ 2025-12-07T06:17:47,568 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2025-12-07T06:17:47,569 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,569 341 | char *fnName = "intersectArcArc"; 2025-12-07T06:17:47,570 | ^~~~~~ 2025-12-07T06:17:47,574 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2025-12-07T06:17:47,575 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2025-12-07T06:17:47,575 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2025-12-07T06:17:47,576 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2025-12-07T06:17:47,576 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2025-12-07T06:17:47,577 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,578 151 | char *fnName = "CLOSEST ON BULGE"; 2025-12-07T06:17:47,578 | ^~~~~~ 2025-12-07T06:17:47,587 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2025-12-07T06:17:47,587 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,588 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2025-12-07T06:17:47,589 | ^~~~~~ 2025-12-07T06:17:47,590 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2025-12-07T06:17:47,590 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,591 179 | const char *fnName = "intersectNodeNode"; 2025-12-07T06:17:47,592 | ^~~~~~ 2025-12-07T06:17:47,595 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23: 2025-12-07T06:17:47,596 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2025-12-07T06:17:47,597 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2025-12-07T06:17:47,597 109 | double newRadius = cfg->radius; 2025-12-07T06:17:47,598 | ^~~~~~~~~ 2025-12-07T06:17:47,599 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2025-12-07T06:17:47,600 104 | double oldRadius = cfg->radius; 2025-12-07T06:17:47,600 | ^~~~~~~~~ 2025-12-07T06:17:47,601 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2025-12-07T06:17:47,602 100 | char *logTag = intersectionTypeToString(it); 2025-12-07T06:17:47,603 | ^~~~~~ 2025-12-07T06:17:47,604 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,604 61 | char *fnName = "checkAndApplyConfigChanges"; 2025-12-07T06:17:47,605 | ^~~~~~ 2025-12-07T06:17:47,605 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2025-12-07T06:17:47,606 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,606 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2025-12-07T06:17:47,607 | ^~~~~~ 2025-12-07T06:17:47,607 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2025-12-07T06:17:47,608 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,609 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2025-12-07T06:17:47,609 | ^~~~~~ 2025-12-07T06:17:47,610 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2025-12-07T06:17:47,610 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,611 694 | char *fnName = "optimizeNode"; 2025-12-07T06:17:47,611 | ^~~~~~ 2025-12-07T06:17:47,612 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2025-12-07T06:17:47,612 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,613 889 | char *fnName = "optimizeTreeRecursive"; 2025-12-07T06:17:47,613 | ^~~~~~ 2025-12-07T06:17:47,614 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2025-12-07T06:17:47,615 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,615 943 | char *fnName = "optimizeTree"; 2025-12-07T06:17:47,616 | ^~~~~~ 2025-12-07T06:17:47,617 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2025-12-07T06:17:47,618 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14: 2025-12-07T06:17:47,618 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2025-12-07T06:17:47,619 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,620 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2025-12-07T06:17:47,621 | ^~~~~~ 2025-12-07T06:17:47,621 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2025-12-07T06:17:47,622 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,623 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2025-12-07T06:17:47,623 | ^~~~~~ 2025-12-07T06:17:47,624 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2025-12-07T06:17:47,625 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,625 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2025-12-07T06:17:47,626 | ^~~~~~ 2025-12-07T06:17:47,627 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2025-12-07T06:17:47,628 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,629 310 | char *fnName = "CALC DELTAS"; 2025-12-07T06:17:47,629 | ^~~~~~ 2025-12-07T06:17:47,630 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2025-12-07T06:17:47,630 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2025-12-07T06:17:47,631 76 | treeNode *rightNode = getChild(tree, right); 2025-12-07T06:17:47,631 | ^~~~~~~~~ 2025-12-07T06:17:47,632 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2025-12-07T06:17:47,632 75 | treeNode *leftNode = getChild(tree, left); 2025-12-07T06:17:47,633 | ^~~~~~~~ 2025-12-07T06:17:47,633 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2025-12-07T06:17:47,634 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,634 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2025-12-07T06:17:47,635 | ^~~~~~ 2025-12-07T06:17:47,637 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2025-12-07T06:17:47,637 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,638 153 | char *fnName = "CHECK SIBLINGS"; 2025-12-07T06:17:47,638 | ^~~~~~ 2025-12-07T06:17:47,640 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2025-12-07T06:17:47,640 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15: 2025-12-07T06:17:47,641 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2025-12-07T06:17:47,642 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,643 31 | char *fnName = "POINT TO ANGLE"; 2025-12-07T06:17:47,644 | ^~~~~~ 2025-12-07T06:17:47,644 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2025-12-07T06:17:47,645 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2025-12-07T06:17:47,646 169 | double staticRectExt[2] = { 2025-12-07T06:17:47,647 | ^~~~~~~~~~~~~ 2025-12-07T06:17:47,648 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,648 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2025-12-07T06:17:47,649 | ^~~~~~ 2025-12-07T06:17:47,650 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2025-12-07T06:17:47,650 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,651 204 | char *fnName = "fixIntersectionOfCircles"; 2025-12-07T06:17:47,651 | ^~~~~~ 2025-12-07T06:17:47,652 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2025-12-07T06:17:47,653 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,653 310 | char *fnName = "getRotationAngleLxL"; 2025-12-07T06:17:47,654 | ^~~~~~ 2025-12-07T06:17:47,655 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2025-12-07T06:17:47,656 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,656 349 | char *fnName = "getRotationAngleLxS"; 2025-12-07T06:17:47,657 | ^~~~~~ 2025-12-07T06:17:47,657 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2025-12-07T06:17:47,658 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,658 382 | char *fnName = "getRotationAngleSxL"; 2025-12-07T06:17:47,659 | ^~~~~~ 2025-12-07T06:17:47,659 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2025-12-07T06:17:47,660 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-07T06:17:47,660 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2025-12-07T06:17:47,661 | ^~~~~~~~~ 2025-12-07T06:17:47,662 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,662 413 | char *fnName = "getRotationAngleLxB"; 2025-12-07T06:17:47,663 | ^~~~~~ 2025-12-07T06:17:47,663 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2025-12-07T06:17:47,664 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-07T06:17:47,665 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2025-12-07T06:17:47,665 | ^~~~~~~~~ 2025-12-07T06:17:47,666 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,667 477 | char *fnName = "getRotationAngleBxL"; 2025-12-07T06:17:47,667 | ^~~~~~ 2025-12-07T06:17:47,668 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2025-12-07T06:17:47,668 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,669 541 | char *fnName = "getRotationAngleSxS"; 2025-12-07T06:17:47,670 | ^~~~~~ 2025-12-07T06:17:47,671 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2025-12-07T06:17:47,671 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-07T06:17:47,672 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2025-12-07T06:17:47,673 | ^~~~~~~~~ 2025-12-07T06:17:47,673 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,674 560 | char *fnName = "getRotationAngleSxB"; 2025-12-07T06:17:47,675 | ^~~~~~ 2025-12-07T06:17:47,675 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2025-12-07T06:17:47,676 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-07T06:17:47,677 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2025-12-07T06:17:47,677 | ^~~~~~~~~ 2025-12-07T06:17:47,678 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,679 605 | char *fnName = "getRotationAngleBxS"; 2025-12-07T06:17:47,679 | ^~~~~~ 2025-12-07T06:17:47,680 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2025-12-07T06:17:47,681 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-07T06:17:47,681 660 | short intersect = intersectBulgesBulges(staticStem, 2025-12-07T06:17:47,682 | ^~~~~~~~~ 2025-12-07T06:17:47,682 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,683 650 | char *fnName = "getRotationAngleBxB"; 2025-12-07T06:17:47,684 | ^~~~~~ 2025-12-07T06:17:47,684 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2025-12-07T06:17:47,685 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,685 64 | switch (it) { 2025-12-07T06:17:47,686 | ^~~~~~ 2025-12-07T06:17:47,686 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,687 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,687 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,688 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,689 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,689 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,690 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,691 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,691 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2025-12-07T06:17:47,692 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,693 44 | char *fnName = "getRotationSign"; 2025-12-07T06:17:47,694 | ^~~~~~ 2025-12-07T06:17:47,694 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2025-12-07T06:17:47,695 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,696 105 | char *fnName = "getRotationSign"; 2025-12-07T06:17:47,696 | ^~~~~~ 2025-12-07T06:17:47,697 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2025-12-07T06:17:47,697 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,698 145 | char *fnName = "getRotationSign"; 2025-12-07T06:17:47,699 | ^~~~~~ 2025-12-07T06:17:47,700 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2025-12-07T06:17:47,700 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,701 222 | char *fnName = "fixIntersectionWithAncestor"; 2025-12-07T06:17:47,702 | ^~~~~~ 2025-12-07T06:17:47,702 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2025-12-07T06:17:47,703 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,703 366 | char *fnName = "handleIntersectionWithAncestor"; 2025-12-07T06:17:47,704 | ^~~~~~ 2025-12-07T06:17:47,704 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2025-12-07T06:17:47,705 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2025-12-07T06:17:47,705 498 | double stemSouthX = loopX; 2025-12-07T06:17:47,706 | ^~~~~~~~~~ 2025-12-07T06:17:47,707 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2025-12-07T06:17:47,707 497 | double stemNorthX = loopX; 2025-12-07T06:17:47,708 | ^~~~~~~~~~ 2025-12-07T06:17:47,708 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,709 482 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-07T06:17:47,709 | ^~~~~~ 2025-12-07T06:17:47,710 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2025-12-07T06:17:47,711 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,711 625 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-07T06:17:47,712 | ^~~~~~ 2025-12-07T06:17:47,713 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2025-12-07T06:17:47,714 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2025-12-07T06:17:47,715 715 | intersectionType it = noIntersection; 2025-12-07T06:17:47,716 | ^~ 2025-12-07T06:17:47,716 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,717 695 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-07T06:17:47,718 | ^~~~~~ 2025-12-07T06:17:47,718 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2025-12-07T06:17:47,719 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,720 759 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-07T06:17:47,720 | ^~~~~~ 2025-12-07T06:17:47,721 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2025-12-07T06:17:47,722 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,723 950 | char *fnName = "checkNodeAgainstAncestors"; 2025-12-07T06:17:47,723 | ^~~~~~ 2025-12-07T06:17:47,724 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2025-12-07T06:17:47,725 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,725 29 | char *fnName = "checkAndFixIntersections"; 2025-12-07T06:17:47,726 | ^~~~~~ 2025-12-07T06:17:47,727 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2025-12-07T06:17:47,727 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-07T06:17:47,728 75 | char *fnName = "checkRemainingIntersections"; 2025-12-07T06:17:47,728 | ^~~~~~ 2025-12-07T06:17:47,729 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2025-12-07T06:17:47,729 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-07T06:17:47,730 505 | short intersect = checkRemainingIntersections(myX, 2025-12-07T06:17:47,730 | ^~~~~~~~~ 2025-12-07T06:17:47,731 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2025-12-07T06:17:47,732 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2025-12-07T06:17:47,732 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:17:47,733 126 | intToMotiv(const int _int); 2025-12-07T06:17:47,733 | ^~~~~~~~~~ 2025-12-07T06:17:47,734 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2025-12-07T06:17:47,735 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2025-12-07T06:17:47,735 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:17:47,736 135 | printLBox(const loopBox *loop); 2025-12-07T06:17:47,737 | ^~~~~~~~~ 2025-12-07T06:17:47,738 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:17:47,738 139 | printSBox(const stemBox *stem); 2025-12-07T06:17:47,739 | ^~~~~~~~~ 2025-12-07T06:17:47,740 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:17:47,740 224 | printTree(const treeNode *node, 2025-12-07T06:17:47,741 | ^~~~~~~~~ 2025-12-07T06:17:47,794 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2025-12-07T06:17:47,795 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,796 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2025-12-07T06:17:47,796 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,797 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,797 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2025-12-07T06:17:47,798 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,798 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,799 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2025-12-07T06:17:47,800 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,800 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,801 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2025-12-07T06:17:47,802 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,803 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,803 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2025-12-07T06:17:47,804 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,804 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,805 142 | getRotationSign(const treeNode **const path, 2025-12-07T06:17:47,805 | ^~~~~~~~~~~~~~~ 2025-12-07T06:17:47,806 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,806 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2025-12-07T06:17:47,807 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,808 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,808 111 | checkBounds(const double l1, 2025-12-07T06:17:47,809 | ^~~~~~~~~~~ 2025-12-07T06:17:47,809 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,810 471 | TestLoopBulge(const double c[2], 2025-12-07T06:17:47,811 | ^~~~~~~~~~~~~ 2025-12-07T06:17:47,811 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,812 207 | ClosestPtPointTriangle(const double p[2], 2025-12-07T06:17:47,813 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,813 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,814 1056 | getChildNode(treeNode *tree, 2025-12-07T06:17:47,814 | ^~~~~~~~~~~~ 2025-12-07T06:17:47,815 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,816 1038 | getStemCenter(const treeNode *node, 2025-12-07T06:17:47,817 | ^~~~~~~~~~~~~ 2025-12-07T06:17:47,817 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,818 569 | getExterior(treeNode *node) 2025-12-07T06:17:47,818 | ^~~~~~~~~~~ 2025-12-07T06:17:47,819 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,820 537 | getPairedAngle(const treeNode *node) 2025-12-07T06:17:47,820 | ^~~~~~~~~~~~~~ 2025-12-07T06:17:47,821 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,822 235 | rotateStemBox(stemBox *box, 2025-12-07T06:17:47,822 | ^~~~~~~~~~~~~ 2025-12-07T06:17:47,823 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,824 203 | rotateLoopBox(loopBox *box, 2025-12-07T06:17:47,824 | ^~~~~~~~~~~~~ 2025-12-07T06:17:47,825 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,826 243 | getArcAngleDegree(const config *cfg, 2025-12-07T06:17:47,827 | ^~~~~~~~~~~~~~~~~ 2025-12-07T06:17:47,828 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,828 216 | cfgPrintConfig(config *cfg) 2025-12-07T06:17:47,829 | ^~~~~~~~~~~~~~ 2025-12-07T06:17:47,829 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,830 506 | normalizeAngle(const double angle, 2025-12-07T06:17:47,830 | ^~~~~~~~~~~~~~ 2025-12-07T06:17:47,831 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2025-12-07T06:17:47,831 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2025-12-07T06:17:47,832 116 | angleToDistance(const double radius, 2025-12-07T06:17:47,832 | ^~~~~~~~~~~~~~~ 2025-12-07T06:17:51,989 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2025-12-07T06:17:51,990 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘internalChildAngle’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:51,990 255 | double diffToStraight = MATH_PI - internalChildAngle; 2025-12-07T06:17:51,991 | ^~~~~~~~~~~~~~ 2025-12-07T06:17:51,992 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:228:10: note: ‘internalChildAngle’ was declared here 2025-12-07T06:17:51,992 228 | double internalChildAngle; 2025-12-07T06:17:51,993 | ^~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,590 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2025-12-07T06:17:53,762 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2025-12-07T06:17:53,763 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2025-12-07T06:17:53,764 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-07T06:17:53,765 446 | isToTheRightPointVector(const double *lineStart, 2025-12-07T06:17:53,765 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2025-12-07T06:17:53,766 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2025-12-07T06:17:53,767 102 | isToTheRightPointVector(const double lineStart[2], 2025-12-07T06:17:53,767 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-07T06:17:53,768 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:447:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-07T06:17:53,769 447 | const double *lineVector, 2025-12-07T06:17:53,769 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2025-12-07T06:17:53,770 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2025-12-07T06:17:53,771 103 | const double lineVector[2], 2025-12-07T06:17:53,771 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2025-12-07T06:17:53,772 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:448:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-07T06:17:53,773 448 | const double *point) 2025-12-07T06:17:53,774 | ~~~~~~~~~~~~~~~^~~~~ 2025-12-07T06:17:53,774 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2025-12-07T06:17:53,775 104 | const double point[2]); 2025-12-07T06:17:53,775 | ~~~~~~~~~~~~~~^~~~~~~~ 2025-12-07T06:17:53,776 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2025-12-07T06:17:53,776 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:53,777 799 | double alpha[3]; 2025-12-07T06:17:53,777 | ^~~~~ 2025-12-07T06:17:53,803 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2025-12-07T06:17:53,804 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2025-12-07T06:17:53,804 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2025-12-07T06:17:53,805 126 | intToMotiv(const int _int); 2025-12-07T06:17:53,805 | ^~~~~~~~~~ 2025-12-07T06:17:53,819 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,820 705 | cfgIsValid(config *cfg, 2025-12-07T06:17:53,820 | ^~~~~~~~~~ 2025-12-07T06:17:53,821 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,821 648 | cfgApplyChanges(config *cfg, 2025-12-07T06:17:53,822 | ^~~~~~~~~~~~~~~ 2025-12-07T06:17:53,823 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,824 243 | getArcAngleDegree(const config *cfg, 2025-12-07T06:17:53,824 | ^~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,825 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,826 216 | cfgPrintConfig(config *cfg) 2025-12-07T06:17:53,826 | ^~~~~~~~~~~~~~ 2025-12-07T06:17:53,827 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,828 207 | cfgFreeConfig(config *cfg) 2025-12-07T06:17:53,829 | ^~~~~~~~~~~~~ 2025-12-07T06:17:53,829 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,830 184 | cfgCloneConfig(const config *cfg) 2025-12-07T06:17:53,831 | ^~~~~~~~~~~~~~ 2025-12-07T06:17:53,831 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:764:1: warning: ‘normal’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,832 764 | normal(const double v[2], 2025-12-07T06:17:53,833 | ^~~~~~ 2025-12-07T06:17:53,833 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:723:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,834 723 | getCutPointsOfCircleAndLine(const double *center, 2025-12-07T06:17:53,835 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,836 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:608:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,837 608 | getCutPointsOfCircles(const double *c1, 2025-12-07T06:17:53,838 | ^~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,839 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:568:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,839 568 | translatePointByVector(const double *point, 2025-12-07T06:17:53,840 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,841 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:555:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,841 555 | rotateVectorByAngle(const double *vector, 2025-12-07T06:17:53,842 | ^~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,842 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,843 506 | normalizeAngle(const double angle, 2025-12-07T06:17:53,844 | ^~~~~~~~~~~~~~ 2025-12-07T06:17:53,844 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:490:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,845 490 | anglePtPtPt2D(const double *p1, 2025-12-07T06:17:53,845 | ^~~~~~~~~~~~~ 2025-12-07T06:17:53,846 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,846 446 | isToTheRightPointVector(const double *lineStart, 2025-12-07T06:17:53,847 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,847 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,848 359 | vectorLength2DSquared(const double vector[2]) 2025-12-07T06:17:53,848 | ^~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:17:53,849 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:342:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,850 342 | toRad(double angle) 2025-12-07T06:17:53,850 | ^~~~~ 2025-12-07T06:17:53,851 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2025-12-07T06:17:53,852 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,852 116 | angleToDistance(const double radius, 2025-12-07T06:17:53,853 | ^~~~~~~~~~~~~~~ 2025-12-07T06:17:53,854 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,855 108 | distanceToAngle(const double radius, 2025-12-07T06:17:53,855 | ^~~~~~~~~~~~~~~ 2025-12-07T06:17:53,856 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2025-12-07T06:17:53,857 62 | bubblesort(const int numValues, 2025-12-07T06:17:53,858 | ^~~~~~~~~~ 2025-12-07T06:17:54,822 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/alignments.o -fopenmp 2025-12-07T06:17:55,179 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_opt’: 2025-12-07T06:17:55,180 src/ViennaRNA/plotting/alignments.c:176:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:17:55,181 176 | columnWidth = (options.columns == 0) ? length : options.columns; 2025-12-07T06:17:55,182 | ^~~~~~ 2025-12-07T06:17:55,182 src/ViennaRNA/plotting/alignments.c:300:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:55,183 300 | for (i = options.start; i <= options.end; i++) { 2025-12-07T06:17:55,184 | ^~ 2025-12-07T06:17:55,185 src/ViennaRNA/plotting/alignments.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:55,185 302 | if ((j > i) && (j <= options.end)) { 2025-12-07T06:17:55,186 | ^~ 2025-12-07T06:17:55,186 src/ViennaRNA/plotting/alignments.c:387:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:55,187 387 | if (length - currPos < max_len) 2025-12-07T06:17:55,187 | ^ 2025-12-07T06:17:55,188 src/ViennaRNA/plotting/alignments.c:394:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:17:55,189 394 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2025-12-07T06:17:55,189 | ^ 2025-12-07T06:17:55,200 In file included from src/ViennaRNA/plotting/alignments.c:27: 2025-12-07T06:17:55,201 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2025-12-07T06:17:55,202 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2025-12-07T06:17:55,202 151 | print_PS_coords(FILE *fh, 2025-12-07T06:17:55,203 | ^~~~~~~~~~~~~~~ 2025-12-07T06:17:55,205 src/ViennaRNA/plotting/ps_helpers.inc:131:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2025-12-07T06:17:55,205 131 | print_PS_sequence(FILE *fh, 2025-12-07T06:17:55,206 | ^~~~~~~~~~~~~~~~~ 2025-12-07T06:17:55,787 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/eps.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/eps.o -fopenmp 2025-12-07T06:17:56,148 src/ViennaRNA/plotting/eps.c: In function ‘rnaplot_EPS’: 2025-12-07T06:17:56,149 src/ViennaRNA/plotting/eps.c:266:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:56,150 266 | for (i = 0; i < length; i++) { 2025-12-07T06:17:56,150 | ^ 2025-12-07T06:17:56,151 src/ViennaRNA/plotting/eps.c:282:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:56,152 282 | for (i = 0; i < length; i++) 2025-12-07T06:17:56,153 | ^ 2025-12-07T06:17:56,153 src/ViennaRNA/plotting/eps.c:294:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:56,154 294 | for (i = 1; i <= length; i++) 2025-12-07T06:17:56,154 | ^~ 2025-12-07T06:17:56,155 src/ViennaRNA/plotting/eps.c:310:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:56,156 310 | for (k = 0; k < Lg; k++) { 2025-12-07T06:17:56,156 | ^ 2025-12-07T06:17:56,157 src/ViennaRNA/plotting/eps.c:210:18: warning: unused variable ‘Y’ [-Wunused-variable] 2025-12-07T06:17:56,158 210 | float *X, *Y; 2025-12-07T06:17:56,158 | ^ 2025-12-07T06:17:56,159 src/ViennaRNA/plotting/eps.c:210:14: warning: unused variable ‘X’ [-Wunused-variable] 2025-12-07T06:17:56,160 210 | float *X, *Y; 2025-12-07T06:17:56,161 | ^ 2025-12-07T06:17:56,161 src/ViennaRNA/plotting/eps.c:206:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2025-12-07T06:17:56,162 206 | float xmin, xmax, ymin, ymax; 2025-12-07T06:17:56,162 | ^~~~ 2025-12-07T06:17:56,163 src/ViennaRNA/plotting/eps.c:206:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2025-12-07T06:17:56,163 206 | float xmin, xmax, ymin, ymax; 2025-12-07T06:17:56,164 | ^~~~ 2025-12-07T06:17:56,165 src/ViennaRNA/plotting/eps.c:206:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2025-12-07T06:17:56,165 206 | float xmin, xmax, ymin, ymax; 2025-12-07T06:17:56,166 | ^~~~ 2025-12-07T06:17:56,166 src/ViennaRNA/plotting/eps.c:206:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2025-12-07T06:17:56,167 206 | float xmin, xmax, ymin, ymax; 2025-12-07T06:17:56,167 | ^~~~ 2025-12-07T06:17:56,168 src/ViennaRNA/plotting/eps.c: In function ‘PS_rna_plot_snoop_a’: 2025-12-07T06:17:56,169 src/ViennaRNA/plotting/eps.c:604:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:17:56,170 604 | if (cut_point > 0 && cut_point <= strlen(string)) 2025-12-07T06:17:56,171 | ^~ 2025-12-07T06:17:56,989 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/gml.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/gml.o -fopenmp 2025-12-07T06:17:57,220 src/ViennaRNA/plotting/gml.c: In function ‘rnaplot_gml’: 2025-12-07T06:17:57,221 src/ViennaRNA/plotting/gml.c:162:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:17:57,222 162 | if (pt[i] > i) 2025-12-07T06:17:57,223 | ^ 2025-12-07T06:17:57,368 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/layouts.o -fopenmp 2025-12-07T06:17:57,596 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2025-12-07T06:17:57,597 src/ViennaRNA/plotting/layouts.c:557:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:57,597 557 | int ret, n; 2025-12-07T06:17:57,599 | ^~~ 2025-12-07T06:17:57,600 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2025-12-07T06:17:57,601 src/ViennaRNA/plotting/layouts.c:580:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:17:57,601 580 | int ret, n; 2025-12-07T06:17:57,602 | ^~~ 2025-12-07T06:17:58,097 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2025-12-07T06:17:58,804 src/ViennaRNA/plotting/naview/naview.c: In function ‘construct_circle_segment’: 2025-12-07T06:17:58,805 src/ViennaRNA/plotting/naview/naview.c:1112:36: warning: ‘angleinc’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:58,806 1112 | bases[i].x = nrx + rr*cos(a+j*angleinc); 2025-12-07T06:17:58,806 | ~^~~~~~~~~ 2025-12-07T06:17:58,807 src/ViennaRNA/plotting/naview/naview.c:1077:21: note: ‘angleinc’ was declared here 2025-12-07T06:17:58,807 1077 | double dx,dy,rr,h,angleinc,midx,midy,xn,yn,nrx,nry,mx,my,a; 2025-12-07T06:17:58,808 | ^~~~~~~~ 2025-12-07T06:17:58,808 src/ViennaRNA/plotting/naview/naview.c:1103:19: warning: ‘h’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:58,809 1103 | nrx = midx + h*xn; 2025-12-07T06:17:58,809 | ~^~~ 2025-12-07T06:17:58,810 src/ViennaRNA/plotting/naview/naview.c:1077:19: note: ‘h’ was declared here 2025-12-07T06:17:58,811 1077 | double dx,dy,rr,h,angleinc,midx,midy,xn,yn,nrx,nry,mx,my,a; 2025-12-07T06:17:58,811 | ^ 2025-12-07T06:17:59,174 In function ‘determine_radius’, 2025-12-07T06:17:59,175 inlined from ‘traverse_loop’ at src/ViennaRNA/plotting/naview/naview.c:572:3: 2025-12-07T06:17:59,175 src/ViennaRNA/plotting/naview/naview.c:966:22: warning: ‘imindit’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:59,176 966 | lp->connections[imindit]->extruded = true; 2025-12-07T06:17:59,177 | ^ 2025-12-07T06:17:59,177 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2025-12-07T06:17:59,178 src/ViennaRNA/plotting/naview/naview.c:931:21: note: ‘imindit’ was declared here 2025-12-07T06:17:59,179 931 | int i,j,end,start,imindit; 2025-12-07T06:17:59,180 | ^~~~~~~ 2025-12-07T06:17:59,181 src/ViennaRNA/plotting/naview/naview.c:632:27: warning: ‘imaxloop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:17:59,181 632 | cp = lp->connections[icend]; 2025-12-07T06:17:59,182 | ^ 2025-12-07T06:17:59,183 src/ViennaRNA/plotting/naview/naview.c:543:7: note: ‘imaxloop’ was declared here 2025-12-07T06:17:59,184 543 | int imaxloop; 2025-12-07T06:17:59,184 | ^~~~~~~~ 2025-12-07T06:17:59,918 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2025-12-07T06:18:00,148 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2025-12-07T06:18:00,149 src/ViennaRNA/plotting/plot_utils.c:280:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:00,150 280 | for (s = 0; s < n_seq; s++) { 2025-12-07T06:18:00,150 | ^ 2025-12-07T06:18:00,541 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/probabilities.o -fopenmp 2025-12-07T06:18:00,902 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2025-12-07T06:18:00,903 src/ViennaRNA/plotting/probabilities.c:311:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:00,904 311 | linbottom_size, linleft_num, linleft_size, linright_num, 2025-12-07T06:18:00,904 | ^~~~~~~~~~~~ 2025-12-07T06:18:00,905 src/ViennaRNA/plotting/probabilities.c:311:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:00,905 311 | linbottom_size, linleft_num, linleft_size, linright_num, 2025-12-07T06:18:00,906 | ^~~~~~~~~~~ 2025-12-07T06:18:00,906 src/ViennaRNA/plotting/probabilities.c:310:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:00,907 310 | int i, lintop_num, lintop_size, linbottom_num, 2025-12-07T06:18:00,907 | ^~~~~~~~~~~~~ 2025-12-07T06:18:00,908 src/ViennaRNA/plotting/probabilities.c:310:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:00,909 310 | int i, lintop_num, lintop_size, linbottom_num, 2025-12-07T06:18:00,909 | ^~~~~~~~~~ 2025-12-07T06:18:00,916 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2025-12-07T06:18:00,917 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:00,918 880 | for(i = 0; i < length; i++){ 2025-12-07T06:18:00,919 | ^ 2025-12-07T06:18:00,919 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2025-12-07T06:18:00,920 src/ViennaRNA/plotting/probabilities.c:913:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:00,921 913 | for(i = 0; i < actual_length; i++, actual_pos++){ 2025-12-07T06:18:00,922 | ^ 2025-12-07T06:18:00,944 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2025-12-07T06:18:00,945 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2025-12-07T06:18:00,945 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2025-12-07T06:18:00,946 151 | print_PS_coords(FILE *fh, 2025-12-07T06:18:00,947 | ^~~~~~~~~~~~~~~ 2025-12-07T06:18:02,176 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/ssv.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/ssv.o -fopenmp 2025-12-07T06:18:02,403 src/ViennaRNA/plotting/ssv.c: In function ‘rnaplot_ssv’: 2025-12-07T06:18:02,403 src/ViennaRNA/plotting/ssv.c:188:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:02,405 188 | if (pt[i] > i) 2025-12-07T06:18:02,406 | ^ 2025-12-07T06:18:02,407 src/ViennaRNA/plotting/ssv.c:112:35: warning: variable ‘ymax’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:02,407 112 | float xmin, xmax, ymin, ymax; 2025-12-07T06:18:02,408 | ^~~~ 2025-12-07T06:18:02,409 src/ViennaRNA/plotting/ssv.c:112:23: warning: variable ‘xmax’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:02,409 112 | float xmin, xmax, ymin, ymax; 2025-12-07T06:18:02,410 | ^~~~ 2025-12-07T06:18:02,563 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/structures.o -fopenmp 2025-12-07T06:18:02,790 src/ViennaRNA/plotting/structures.c: In function ‘vrna_plot_structure’: 2025-12-07T06:18:02,790 src/ViennaRNA/plotting/structures.c:68:7: warning: unused variable ‘no_aux_data’ [-Wunused-variable] 2025-12-07T06:18:02,792 68 | int no_aux_data = 0; 2025-12-07T06:18:02,793 | ^~~~~~~~~~~ 2025-12-07T06:18:02,860 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/svg.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/svg.o -fopenmp 2025-12-07T06:18:03,118 src/ViennaRNA/plotting/svg.c: In function ‘rnaplot_SVG’: 2025-12-07T06:18:03,119 src/ViennaRNA/plotting/svg.c:231:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-07T06:18:03,119 231 | if (i + 1 < pt[i + 1]) { 2025-12-07T06:18:03,120 | ^ 2025-12-07T06:18:03,121 src/ViennaRNA/plotting/svg.c:294:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:03,122 294 | for (int j = 0; j < n - 1; j++) { 2025-12-07T06:18:03,122 | ^ 2025-12-07T06:18:03,123 src/ViennaRNA/plotting/svg.c: In function ‘print_SVG_footer_data’: 2025-12-07T06:18:03,124 src/ViennaRNA/plotting/svg.c:387:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:03,125 387 | if (pt[i] > i) { 2025-12-07T06:18:03,125 | ^ 2025-12-07T06:18:03,126 src/ViennaRNA/plotting/svg.c:394:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:03,127 394 | if (pt[i] > i) 2025-12-07T06:18:03,127 | ^ 2025-12-07T06:18:03,136 src/ViennaRNA/plotting/svg.c: At top level: 2025-12-07T06:18:03,136 src/ViennaRNA/plotting/svg.c:356:1: warning: ‘print_SVG_footer’ defined but not used [-Wunused-function] 2025-12-07T06:18:03,137 356 | print_SVG_footer(FILE *fh) 2025-12-07T06:18:03,138 | ^~~~~~~~~~~~~~~~ 2025-12-07T06:18:03,568 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/xrna.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/xrna.o -fopenmp 2025-12-07T06:18:03,912 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probabilities/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probabilities/equilibrium_probs.o -fopenmp 2025-12-07T06:18:04,276 src/ViennaRNA/probabilities/equilibrium_probs.c: In function ‘multistrand_contrib’: 2025-12-07T06:18:04,278 src/ViennaRNA/probabilities/equilibrium_probs.c:2330:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:04,279 2330 | sc_ext_exp_split sc_split; 2025-12-07T06:18:04,279 | ^~~~~~~~ 2025-12-07T06:18:16,102 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probabilities/probs_structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probabilities/probs_structures.o -fopenmp 2025-12-07T06:18:16,689 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/SHAPE.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/SHAPE.o -fopenmp 2025-12-07T06:18:17,093 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/probing.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/probing.o -fopenmp 2025-12-07T06:18:17,376 src/ViennaRNA/probing/probing.c:817:1: warning: ‘get_cb_up_options_free_default’ defined but not used [-Wunused-function] 2025-12-07T06:18:17,376 817 | get_cb_up_options_free_default(void) 2025-12-07T06:18:17,377 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:18:17,377 src/ViennaRNA/probing/probing.c:810:1: warning: ‘get_cb_up_options_default’ defined but not used [-Wunused-function] 2025-12-07T06:18:17,378 810 | get_cb_up_options_default(void) 2025-12-07T06:18:17,378 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-07T06:18:17,379 src/ViennaRNA/probing/probing.c:803:1: warning: ‘get_cb_up_default’ defined but not used [-Wunused-function] 2025-12-07T06:18:17,380 803 | get_cb_up_default(void) 2025-12-07T06:18:17,380 | ^~~~~~~~~~~~~~~~~ 2025-12-07T06:18:18,453 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_deigan.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_deigan.o -fopenmp 2025-12-07T06:18:19,009 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_eddy.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_eddy.o -fopenmp 2025-12-07T06:18:21,013 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_zarringhalam.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_zarringhalam.o -fopenmp 2025-12-07T06:18:21,804 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sampling/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sampling/boltzmann_sampling.o -fopenmp 2025-12-07T06:18:22,093 In file included from src/ViennaRNA/sampling/boltzmann_sampling.c:37: 2025-12-07T06:18:22,094 src/ViennaRNA/sampling/data_structures_nonred.inc: In function ‘free_all_nrll’: 2025-12-07T06:18:22,095 src/ViennaRNA/sampling/data_structures_nonred.inc:1159:7: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-07T06:18:22,096 1159 | int i; 2025-12-07T06:18:22,097 | ^ 2025-12-07T06:18:28,184 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sampling/bs_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sampling/bs_wrappers.o -fopenmp 2025-12-07T06:18:28,580 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2025-12-07T06:18:28,982 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/alphabet.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/alphabet.o -fopenmp 2025-12-07T06:18:29,706 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/msa.o -fopenmp 2025-12-07T06:18:29,945 src/ViennaRNA/sequences/msa.c: In function ‘vrna_pscore’: 2025-12-07T06:18:29,946 src/ViennaRNA/sequences/msa.c:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:18:29,947 222 | if ((u + 2) <= max_span) { 2025-12-07T06:18:29,948 | ^~ 2025-12-07T06:18:29,953 src/ViennaRNA/sequences/msa.c: In function ‘vrna_aln_conservation_struct’: 2025-12-07T06:18:29,954 src/ViennaRNA/sequences/msa.c:554:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-07T06:18:29,955 554 | if (i < pt[i]) { 2025-12-07T06:18:29,955 | ^ 2025-12-07T06:18:29,962 src/ViennaRNA/sequences/msa.c: In function ‘read_clustal’: 2025-12-07T06:18:29,963 src/ViennaRNA/sequences/msa.c:896:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:18:29,963 896 | for (i = 0; i < strlen(seq); i++) { 2025-12-07T06:18:29,964 | ^ 2025-12-07T06:18:29,966 src/ViennaRNA/sequences/msa.c:946:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:18:29,966 946 | if (strlen(AlignedSeqs[nn]) != n) { 2025-12-07T06:18:29,967 | ^~ 2025-12-07T06:18:31,706 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/seq_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/seq_utils.o -fopenmp 2025-12-07T06:18:31,963 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/sequence.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/sequence.o -fopenmp 2025-12-07T06:18:32,863 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snofold.o -fopenmp 2025-12-07T06:18:33,115 src/ViennaRNA/snofold.c: In function ‘snofold’: 2025-12-07T06:18:33,115 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,116 369 | int length, energy, bonus, bonus_cnt, s; 2025-12-07T06:18:33,117 | ^~~~~~~~~ 2025-12-07T06:18:33,118 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,119 369 | int length, energy, bonus, bonus_cnt, s; 2025-12-07T06:18:33,119 | ^~~~~ 2025-12-07T06:18:33,122 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2025-12-07T06:18:33,122 src/ViennaRNA/snofold.c:593:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:18:33,123 593 | if (strlen(strings[s]) != length) 2025-12-07T06:18:33,123 | ^~ 2025-12-07T06:18:33,128 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2025-12-07T06:18:33,128 src/ViennaRNA/snofold.c:625:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,129 625 | int bonus, n_seq, s; 2025-12-07T06:18:33,129 | ^~~~~ 2025-12-07T06:18:33,132 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2025-12-07T06:18:33,133 src/ViennaRNA/snofold.c:789:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,133 789 | int ml, ss, cij, traced, i1, j1, p, q; 2025-12-07T06:18:33,134 | ^~ 2025-12-07T06:18:33,134 src/ViennaRNA/snofold.c:789:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,135 789 | int ml, ss, cij, traced, i1, j1, p, q; 2025-12-07T06:18:33,135 | ^~ 2025-12-07T06:18:33,136 src/ViennaRNA/snofold.c:776:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,137 776 | int bonus, n_seq, *type; 2025-12-07T06:18:33,137 | ^~~~~ 2025-12-07T06:18:33,145 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2025-12-07T06:18:33,146 src/ViennaRNA/snofold.c:1155:26: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,146 1155 | int cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2025-12-07T06:18:33,147 | ^~ 2025-12-07T06:18:33,148 src/ViennaRNA/snofold.c:1155:22: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:33,149 1155 | int cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2025-12-07T06:18:33,150 | ^~ 2025-12-07T06:18:33,150 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2025-12-07T06:18:33,151 src/ViennaRNA/snofold.c:1313:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-07T06:18:33,152 1313 | if (strlen(strings[s]) != length) 2025-12-07T06:18:33,153 | ^~ 2025-12-07T06:18:33,181 src/ViennaRNA/snofold.c: At top level: 2025-12-07T06:18:33,182 src/ViennaRNA/snofold.c:159:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2025-12-07T06:18:33,183 159 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2025-12-07T06:18:33,184 | ^~~~~ 2025-12-07T06:18:35,421 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snoop.o -fopenmp 2025-12-07T06:18:35,690 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2025-12-07T06:18:35,691 src/ViennaRNA/snoop.c:253:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,692 253 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-07T06:18:35,693 | ^~ 2025-12-07T06:18:35,702 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2025-12-07T06:18:35,702 src/ViennaRNA/snoop.c:847:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,703 847 | int min_k, max_k; 2025-12-07T06:18:35,704 | ^~~~~ 2025-12-07T06:18:35,704 src/ViennaRNA/snoop.c:847:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,705 847 | int min_k, max_k; 2025-12-07T06:18:35,705 | ^~~~~ 2025-12-07T06:18:35,718 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2025-12-07T06:18:35,719 src/ViennaRNA/snoop.c:1152:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,719 1152 | int Loop_E; 2025-12-07T06:18:35,720 | ^~~~~~ 2025-12-07T06:18:35,720 src/ViennaRNA/snoop.c:1150:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,721 1150 | int Loop_D; 2025-12-07T06:18:35,721 | ^~~~~~ 2025-12-07T06:18:35,722 src/ViennaRNA/snoop.c:1149:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,722 1149 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,723 | ^~~~~~~~~ 2025-12-07T06:18:35,724 src/ViennaRNA/snoop.c:1149:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,724 1149 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,725 | ^~~~~~~~~ 2025-12-07T06:18:35,725 src/ViennaRNA/snoop.c:1123:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,726 1123 | int max_pos; 2025-12-07T06:18:35,727 | ^~~~~~~ 2025-12-07T06:18:35,728 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2025-12-07T06:18:35,729 src/ViennaRNA/snoop.c:1459:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,730 1459 | int min_k, max_k; 2025-12-07T06:18:35,730 | ^~~~~ 2025-12-07T06:18:35,731 src/ViennaRNA/snoop.c:1459:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,732 1459 | int min_k, max_k; 2025-12-07T06:18:35,733 | ^~~~~ 2025-12-07T06:18:35,737 src/ViennaRNA/snoop.c:1395:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,737 1395 | int Loop_E; 2025-12-07T06:18:35,738 | ^~~~~~ 2025-12-07T06:18:35,739 src/ViennaRNA/snoop.c:1393:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,739 1393 | int Loop_D; 2025-12-07T06:18:35,740 | ^~~~~~ 2025-12-07T06:18:35,740 src/ViennaRNA/snoop.c:1392:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,741 1392 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,741 | ^~~~~~~~~ 2025-12-07T06:18:35,742 src/ViennaRNA/snoop.c:1392:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,743 1392 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,743 | ^~~~~~~~~ 2025-12-07T06:18:35,744 src/ViennaRNA/snoop.c:1366:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,745 1366 | int max_pos; 2025-12-07T06:18:35,746 | ^~~~~~~ 2025-12-07T06:18:35,750 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2025-12-07T06:18:35,752 src/ViennaRNA/snoop.c:1851:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,752 1851 | int min_k, max_k; 2025-12-07T06:18:35,753 | ^~~~~ 2025-12-07T06:18:35,754 src/ViennaRNA/snoop.c:1851:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,754 1851 | int min_k, max_k; 2025-12-07T06:18:35,755 | ^~~~~ 2025-12-07T06:18:35,759 src/ViennaRNA/snoop.c:1790:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,760 1790 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-07T06:18:35,761 | ^~ 2025-12-07T06:18:35,764 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2025-12-07T06:18:35,765 src/ViennaRNA/snoop.c:2055:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,766 2055 | int min_k, max_k; 2025-12-07T06:18:35,766 | ^~~~~ 2025-12-07T06:18:35,768 src/ViennaRNA/snoop.c:2055:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,768 2055 | int min_k, max_k; 2025-12-07T06:18:35,769 | ^~~~~ 2025-12-07T06:18:35,772 src/ViennaRNA/snoop.c:1992:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,772 1992 | int Loop_E; 2025-12-07T06:18:35,773 | ^~~~~~ 2025-12-07T06:18:35,774 src/ViennaRNA/snoop.c:1990:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,774 1990 | int Loop_D; 2025-12-07T06:18:35,775 | ^~~~~~ 2025-12-07T06:18:35,776 src/ViennaRNA/snoop.c:1989:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,776 1989 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,777 | ^~~~~~~~~ 2025-12-07T06:18:35,777 src/ViennaRNA/snoop.c:1989:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,778 1989 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,779 | ^~~~~~~~~ 2025-12-07T06:18:35,779 src/ViennaRNA/snoop.c:1980:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,780 1980 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2025-12-07T06:18:35,781 | ^~~~~ 2025-12-07T06:18:35,781 src/ViennaRNA/snoop.c:1980:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,782 1980 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2025-12-07T06:18:35,783 | ^~~~~ 2025-12-07T06:18:35,786 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2025-12-07T06:18:35,788 src/ViennaRNA/snoop.c:2142:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,789 2142 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2025-12-07T06:18:35,789 | ^ 2025-12-07T06:18:35,795 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2025-12-07T06:18:35,797 src/ViennaRNA/snoop.c:2477:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,798 2477 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2025-12-07T06:18:35,799 | ^~~~ 2025-12-07T06:18:35,800 src/ViennaRNA/snoop.c:2477:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,800 2477 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2025-12-07T06:18:35,801 | ^~~ 2025-12-07T06:18:35,802 src/ViennaRNA/snoop.c:2344:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,803 2344 | int u; 2025-12-07T06:18:35,804 | ^ 2025-12-07T06:18:35,805 src/ViennaRNA/snoop.c:2338:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,805 2338 | int Loop_D; 2025-12-07T06:18:35,806 | ^~~~~~ 2025-12-07T06:18:35,807 src/ViennaRNA/snoop.c:2337:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,807 2337 | int Duplex_El, Duplex_Er, Loop_E; 2025-12-07T06:18:35,807 | ^~~~~~ 2025-12-07T06:18:35,809 src/ViennaRNA/snoop.c:2337:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,809 2337 | int Duplex_El, Duplex_Er, Loop_E; 2025-12-07T06:18:35,810 | ^~~~~~~~~ 2025-12-07T06:18:35,811 src/ViennaRNA/snoop.c:2337:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,811 2337 | int Duplex_El, Duplex_Er, Loop_E; 2025-12-07T06:18:35,812 | ^~~~~~~~~ 2025-12-07T06:18:35,813 src/ViennaRNA/snoop.c:2329:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,814 2329 | int i, j, E, n_max; 2025-12-07T06:18:35,814 | ^~~~~ 2025-12-07T06:18:35,815 src/ViennaRNA/snoop.c:2329:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,816 2329 | int i, j, E, n_max; 2025-12-07T06:18:35,816 | ^ 2025-12-07T06:18:35,821 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2025-12-07T06:18:35,823 src/ViennaRNA/snoop.c:2628:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,824 2628 | int min_k, max_k; 2025-12-07T06:18:35,824 | ^~~~~ 2025-12-07T06:18:35,826 src/ViennaRNA/snoop.c:2628:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,827 2628 | int min_k, max_k; 2025-12-07T06:18:35,827 | ^~~~~ 2025-12-07T06:18:35,839 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2025-12-07T06:18:35,841 src/ViennaRNA/snoop.c:2954:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,842 2954 | int min_k, max_k; 2025-12-07T06:18:35,843 | ^~~~~ 2025-12-07T06:18:35,844 src/ViennaRNA/snoop.c:2954:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,845 2954 | int min_k, max_k; 2025-12-07T06:18:35,846 | ^~~~~ 2025-12-07T06:18:35,852 src/ViennaRNA/snoop.c:2882:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,853 2882 | int Loop_E; 2025-12-07T06:18:35,853 | ^~~~~~ 2025-12-07T06:18:35,855 src/ViennaRNA/snoop.c:2880:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,855 2880 | int Loop_D; 2025-12-07T06:18:35,856 | ^~~~~~ 2025-12-07T06:18:35,857 src/ViennaRNA/snoop.c:2879:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,858 2879 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,858 | ^~~~~~~~~ 2025-12-07T06:18:35,860 src/ViennaRNA/snoop.c:2879:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,861 2879 | int Duplex_El, Duplex_Er; 2025-12-07T06:18:35,862 | ^~~~~~~~~ 2025-12-07T06:18:35,863 src/ViennaRNA/snoop.c:2864:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,863 2864 | int max_pos_j = INF; 2025-12-07T06:18:35,864 | ^~~~~~~~~ 2025-12-07T06:18:35,866 src/ViennaRNA/snoop.c:2850:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,866 2850 | int max_pos; 2025-12-07T06:18:35,867 | ^~~~~~~ 2025-12-07T06:18:35,872 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2025-12-07T06:18:35,875 src/ViennaRNA/snoop.c:3202:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,875 3202 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2025-12-07T06:18:35,876 | ^~~~ 2025-12-07T06:18:35,878 src/ViennaRNA/snoop.c:3202:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:35,878 3202 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2025-12-07T06:18:35,879 | ^~~ 2025-12-07T06:18:36,870 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2025-12-07T06:18:36,873 src/ViennaRNA/snoop.c:2814:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:18:36,873 2814 | free(struc_loop); 2025-12-07T06:18:36,874 | ^~~~~~~~~~~~~~~~ 2025-12-07T06:18:36,875 src/ViennaRNA/snoop.c:2564:12: note: ‘struc_loop’ was declared here 2025-12-07T06:18:36,876 2564 | char *struc_loop; 2025-12-07T06:18:36,876 | ^~~~~~~~~~ 2025-12-07T06:18:37,475 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2025-12-07T06:18:37,476 src/ViennaRNA/snoop.c:1085:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:18:37,477 1085 | free(struc_loop); 2025-12-07T06:18:37,477 | ^~~~~~~~~~~~~~~~ 2025-12-07T06:18:37,478 src/ViennaRNA/snoop.c:747:10: note: ‘struc_loop’ was declared here 2025-12-07T06:18:37,479 747 | char *struc_loop; 2025-12-07T06:18:37,479 | ^~~~~~~~~~ 2025-12-07T06:18:41,396 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2025-12-07T06:18:41,399 src/ViennaRNA/snoop.c:3431:12: warning: ‘u’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:18:41,400 3431 | return mfe; 2025-12-07T06:18:41,401 | ^~~ 2025-12-07T06:18:41,403 src/ViennaRNA/snoop.c:3282:13: note: ‘u’ was declared here 2025-12-07T06:18:41,403 3282 | int u; 2025-12-07T06:18:41,404 | ^ 2025-12-07T06:18:41,406 src/ViennaRNA/snoop.c:3505:12: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:18:41,406 3505 | char *struc_loop; 2025-12-07T06:18:41,407 | ^~~~~~~~~~ 2025-12-07T06:18:42,512 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2025-12-07T06:18:42,515 src/ViennaRNA/snoop.c:3042:19: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-07T06:18:42,515 3042 | position_j[i] = min_j_colonne; 2025-12-07T06:18:42,516 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-07T06:18:42,517 src/ViennaRNA/snoop.c:2863:7: note: ‘min_j_colonne’ was declared here 2025-12-07T06:18:42,518 2863 | int min_j_colonne; 2025-12-07T06:18:42,519 | ^~~~~~~~~~~~~ 2025-12-07T06:18:43,526 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/stringdist.o -fopenmp 2025-12-07T06:18:44,529 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/centroid.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/centroid.o -fopenmp 2025-12-07T06:18:45,000 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/mea.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/mea.o -fopenmp 2025-12-07T06:18:45,230 src/ViennaRNA/structures/mea.c: In function ‘compute_MEA’: 2025-12-07T06:18:45,231 src/ViennaRNA/structures/mea.c:252:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:45,231 252 | if (pp->j > jmax_gq) 2025-12-07T06:18:45,232 | ^ 2025-12-07T06:18:45,233 src/ViennaRNA/structures/mea.c:255:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:45,233 255 | if (pp->i < gq_circ_imin[pp->j]) 2025-12-07T06:18:45,234 | ^ 2025-12-07T06:18:45,234 src/ViennaRNA/structures/mea.c:258:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:45,235 258 | if (pp->i > gq_circ_imax[pp->j]) 2025-12-07T06:18:45,235 | ^ 2025-12-07T06:18:45,236 src/ViennaRNA/structures/mea.c:278:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:45,237 278 | if ((pp->i == i) && 2025-12-07T06:18:45,237 | ^~ 2025-12-07T06:18:45,238 src/ViennaRNA/structures/mea.c: In function ‘prune_plist’: 2025-12-07T06:18:45,239 src/ViennaRNA/structures/mea.c:457:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:18:45,239 457 | for (i = pc->i; i <= pc->j; i++) 2025-12-07T06:18:45,240 | ^~ 2025-12-07T06:18:45,241 src/ViennaRNA/structures/mea.c:462:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:18:45,241 462 | for (i = 1; i <= pc->j; i++) 2025-12-07T06:18:45,242 | ^~ 2025-12-07T06:18:45,243 src/ViennaRNA/structures/mea.c:485:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:18:45,243 485 | for (i = pc->i; i <= pc->j; i++) 2025-12-07T06:18:45,244 | ^~ 2025-12-07T06:18:45,245 src/ViennaRNA/structures/mea.c:496:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:45,245 496 | if (pc->i > n) { 2025-12-07T06:18:45,246 | ^ 2025-12-07T06:18:45,247 src/ViennaRNA/structures/mea.c:508:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:18:45,247 508 | for (i = pc->i; i <= pc->j; i++) 2025-12-07T06:18:45,248 | ^~ 2025-12-07T06:18:45,249 src/ViennaRNA/structures/mea.c:514:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:18:45,250 514 | for (i = 1; i <= pc->j; i++) 2025-12-07T06:18:45,250 | ^~ 2025-12-07T06:18:46,022 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_benchmark.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_benchmark.o -fopenmp 2025-12-07T06:18:46,401 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_dotbracket.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_dotbracket.o -fopenmp 2025-12-07T06:18:46,625 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_ptable’: 2025-12-07T06:18:46,626 src/ViennaRNA/structures/structure_dotbracket.c:193:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,627 193 | if (pt[i] > i) { 2025-12-07T06:18:46,627 | ^ 2025-12-07T06:18:46,628 src/ViennaRNA/structures/structure_dotbracket.c:196:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,628 196 | (pt[i] > stack[stack_cnt - 1])) { 2025-12-07T06:18:46,629 | ^ 2025-12-07T06:18:46,632 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_probs’: 2025-12-07T06:18:46,633 src/ViennaRNA/structures/structure_dotbracket.c:408:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,634 408 | for (j = 1; j <= length; j++) { 2025-12-07T06:18:46,635 | ^~ 2025-12-07T06:18:46,636 src/ViennaRNA/structures/structure_dotbracket.c:415:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,637 415 | for (i = j + 1; i <= length; i++) { 2025-12-07T06:18:46,637 | ^~ 2025-12-07T06:18:46,638 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_letter_structure’: 2025-12-07T06:18:46,639 src/ViennaRNA/structures/structure_dotbracket.c:517:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,639 517 | for (n = 0, k = 1; k <= bp[0].i; k++) { 2025-12-07T06:18:46,640 | ^~ 2025-12-07T06:18:46,641 src/ViennaRNA/structures/structure_dotbracket.c:520:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,642 520 | if ((x - 1 > 0) && (y + 1 <= length)) { 2025-12-07T06:18:46,642 | ^~ 2025-12-07T06:18:46,643 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_bps’: 2025-12-07T06:18:46,644 src/ViennaRNA/structures/structure_dotbracket.c:547:23: warning: unused variable ‘tmp’ [-Wunused-variable] 2025-12-07T06:18:46,645 547 | unsigned int i, j, tmp; 2025-12-07T06:18:46,646 | ^~~ 2025-12-07T06:18:46,647 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_bp_stack’: 2025-12-07T06:18:46,648 src/ViennaRNA/structures/structure_dotbracket.c:614:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,650 614 | for (k = 1; k <= bp[0].i; k++) { 2025-12-07T06:18:46,650 | ^~ 2025-12-07T06:18:46,651 src/ViennaRNA/structures/structure_dotbracket.c:617:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,651 617 | if (i > length) 2025-12-07T06:18:46,652 | ^ 2025-12-07T06:18:46,652 src/ViennaRNA/structures/structure_dotbracket.c:620:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,653 620 | if (j > length) 2025-12-07T06:18:46,653 | ^ 2025-12-07T06:18:46,654 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_plist’: 2025-12-07T06:18:46,654 src/ViennaRNA/structures/structure_dotbracket.c:658:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,655 658 | if (((*ptr).i < n) && ((*ptr).j <= n)) { 2025-12-07T06:18:46,655 | ^ 2025-12-07T06:18:46,656 src/ViennaRNA/structures/structure_dotbracket.c:658:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:46,656 658 | if (((*ptr).i < n) && ((*ptr).j <= n)) { 2025-12-07T06:18:46,657 | ^~ 2025-12-07T06:18:46,658 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_gq_parse’: 2025-12-07T06:18:46,659 src/ViennaRNA/structures/structure_dotbracket.c:706:53: warning: unused variable ‘stacks’ [-Wunused-variable] 2025-12-07T06:18:46,660 706 | unsigned int i, n, end, start, stop, pre, tetrad, stacks, LL[4]; 2025-12-07T06:18:46,661 | ^~~~~~ 2025-12-07T06:18:47,837 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_helix.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_helix.o -fopenmp 2025-12-07T06:18:47,988 src/ViennaRNA/structures/structure_helix.c: In function ‘vrna_hx_merge’: 2025-12-07T06:18:47,990 src/ViennaRNA/structures/structure_helix.c:94:30: warning: unused variable ‘neighbors’ [-Wunused-variable] 2025-12-07T06:18:47,990 94 | int merged, i, j, s, neighbors, n; 2025-12-07T06:18:47,991 | ^~~~~~~~~ 2025-12-07T06:18:48,287 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_metrics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_metrics.o -fopenmp 2025-12-07T06:18:48,506 src/ViennaRNA/structures/structure_metrics.c: In function ‘vrna_dist_mountain’: 2025-12-07T06:18:48,507 src/ViennaRNA/structures/structure_metrics.c:122:18: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:48,509 122 | if (pt1[i] > i) 2025-12-07T06:18:48,510 | ^ 2025-12-07T06:18:48,511 src/ViennaRNA/structures/structure_metrics.c:134:18: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:48,512 134 | if (pt2[i] > i) 2025-12-07T06:18:48,512 | ^ 2025-12-07T06:18:48,656 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_pairtable.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_pairtable.o -fopenmp 2025-12-07T06:18:48,882 src/ViennaRNA/structures/structure_pairtable.c: In function ‘vrna_pt_pk_remove’: 2025-12-07T06:18:48,883 src/ViennaRNA/structures/structure_pairtable.c:153:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:48,883 153 | if (ptable[i] > i) { 2025-12-07T06:18:48,884 | ^ 2025-12-07T06:18:49,251 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_problist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_problist.o -fopenmp 2025-12-07T06:18:49,483 src/ViennaRNA/structures/structure_problist.c: In function ‘wrap_plist’: 2025-12-07T06:18:49,484 src/ViennaRNA/structures/structure_problist.c:475:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-07T06:18:49,485 475 | for (m = 0; m < domains_up->motif_count; m++) { 2025-12-07T06:18:49,485 | ^ 2025-12-07T06:18:50,181 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_shapes.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_shapes.o -fopenmp 2025-12-07T06:18:50,333 src/ViennaRNA/structures/structure_shapes.c: In function ‘get_shrep’: 2025-12-07T06:18:50,333 src/ViennaRNA/structures/structure_shapes.c:251:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-07T06:18:50,334 251 | if (i < pt[i]) { 2025-12-07T06:18:50,335 | ^ 2025-12-07T06:18:50,335 src/ViennaRNA/structures/structure_shapes.c:261:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:50,336 261 | if (pt[i] > end) { 2025-12-07T06:18:50,337 | ^ 2025-12-07T06:18:50,337 src/ViennaRNA/structures/structure_shapes.c:268:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-07T06:18:50,338 268 | if (start < pt[start]) { 2025-12-07T06:18:50,339 | ^ 2025-12-07T06:18:50,340 src/ViennaRNA/structures/structure_shapes.c:289:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:18:50,341 289 | if (pt[k] != l) { 2025-12-07T06:18:50,341 | ^~ 2025-12-07T06:18:50,938 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_tree.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_tree.o -fopenmp 2025-12-07T06:18:51,506 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_utils.o -fopenmp 2025-12-07T06:18:51,885 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/subopt/subopt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt/subopt.o -fopenmp 2025-12-07T06:18:52,261 src/ViennaRNA/subopt/subopt.c: In function ‘scan_m2’: 2025-12-07T06:18:52,262 src/ViennaRNA/subopt/subopt.c:1659:49: warning: variable ‘ij’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:52,262 1659 | int fi, cij, ckj, e_gq, ij, kj, element_energy, best_energy, 2025-12-07T06:18:52,263 | ^~ 2025-12-07T06:18:52,264 src/ViennaRNA/subopt/subopt.c:1659:33: warning: unused variable ‘cij’ [-Wunused-variable] 2025-12-07T06:18:52,265 1659 | int fi, cij, ckj, e_gq, ij, kj, element_energy, best_energy, 2025-12-07T06:18:52,265 | ^~~ 2025-12-07T06:18:52,277 src/ViennaRNA/subopt/subopt.c: In function ‘scan_circular’: 2025-12-07T06:18:52,279 src/ViennaRNA/subopt/subopt.c:2102:40: warning: variable ‘fM2’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:52,279 2102 | FcI, FcM, *fM2, *fM2_real, *fM1_new, *indx, *rtype, kl, tmpE, 2025-12-07T06:18:52,280 | ^~~ 2025-12-07T06:18:52,281 src/ViennaRNA/subopt/subopt.c:2101:72: warning: variable ‘fM1’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:52,281 2101 | int e, e_part, tmp_en, best_energy, *c, *fML, *fM1, Fc, FcH, 2025-12-07T06:18:52,282 | ^~~ 2025-12-07T06:18:52,282 src/ViennaRNA/subopt/subopt.c:2101:66: warning: variable ‘fML’ set but not used [-Wunused-but-set-variable] 2025-12-07T06:18:52,283 2101 | int e, e_part, tmp_en, best_energy, *c, *fML, *fM1, Fc, FcH, 2025-12-07T06:18:52,284 | ^~~ 2025-12-07T06:19:02,106 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/subopt/subopt_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt/subopt_gquad.o -fopenmp 2025-12-07T06:19:02,329 In file included from src/ViennaRNA/subopt/subopt_gquad.c:21: 2025-12-07T06:19:02,330 src/ViennaRNA/subopt/subopt_gquad.c: In function ‘vrna_gq_int_loop_subopt’: 2025-12-07T06:19:02,330 src/ViennaRNA/utils/basic.h:117:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:19:02,331 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-07T06:19:02,331 | ^ 2025-12-07T06:19:02,332 src/ViennaRNA/subopt/subopt_gquad.c:108:17: note: in expansion of macro ‘MAX2’ 2025-12-07T06:19:02,333 108 | minq = MAX2(c0, minq); 2025-12-07T06:19:02,333 | ^~~~ 2025-12-07T06:19:02,334 src/ViennaRNA/utils/basic.h:117:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:19:02,334 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-07T06:19:02,335 | ^~~ 2025-12-07T06:19:02,335 src/ViennaRNA/subopt/subopt_gquad.c:108:17: note: in expansion of macro ‘MAX2’ 2025-12-07T06:19:02,336 108 | minq = MAX2(c0, minq); 2025-12-07T06:19:02,336 | ^~~~ 2025-12-07T06:19:02,337 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:19:02,338 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:19:02,338 | ^ 2025-12-07T06:19:02,339 src/ViennaRNA/subopt/subopt_gquad.c:111:17: note: in expansion of macro ‘MIN2’ 2025-12-07T06:19:02,340 111 | maxq = MIN2(c0, maxq); 2025-12-07T06:19:02,341 | ^~~~ 2025-12-07T06:19:02,342 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:19:02,343 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:19:02,344 | ^~~ 2025-12-07T06:19:02,345 src/ViennaRNA/subopt/subopt_gquad.c:111:17: note: in expansion of macro ‘MIN2’ 2025-12-07T06:19:02,346 111 | maxq = MIN2(c0, maxq); 2025-12-07T06:19:02,346 | ^~~~ 2025-12-07T06:19:02,347 src/ViennaRNA/utils/basic.h:117:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:19:02,347 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-07T06:19:02,348 | ^ 2025-12-07T06:19:02,349 src/ViennaRNA/subopt/subopt_gquad.c:147:15: note: in expansion of macro ‘MAX2’ 2025-12-07T06:19:02,349 147 | minq = MAX2(c0, minq); 2025-12-07T06:19:02,350 | ^~~~ 2025-12-07T06:19:02,351 src/ViennaRNA/utils/basic.h:117:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:19:02,352 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-07T06:19:02,352 | ^~~ 2025-12-07T06:19:02,353 src/ViennaRNA/subopt/subopt_gquad.c:147:15: note: in expansion of macro ‘MAX2’ 2025-12-07T06:19:02,354 147 | minq = MAX2(c0, minq); 2025-12-07T06:19:02,354 | ^~~~ 2025-12-07T06:19:02,355 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-07T06:19:02,356 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:19:02,357 | ^ 2025-12-07T06:19:02,357 src/ViennaRNA/subopt/subopt_gquad.c:150:15: note: in expansion of macro ‘MIN2’ 2025-12-07T06:19:02,358 150 | maxq = MIN2(c0, maxq); 2025-12-07T06:19:02,358 | ^~~~ 2025-12-07T06:19:02,359 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-07T06:19:02,360 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-07T06:19:02,360 | ^~~ 2025-12-07T06:19:02,361 src/ViennaRNA/subopt/subopt_gquad.c:150:15: note: in expansion of macro ‘MIN2’ 2025-12-07T06:19:02,362 150 | maxq = MIN2(c0, maxq); 2025-12-07T06:19:02,362 | ^~~~ 2025-12-07T06:19:02,827 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/subopt/subopt_zuker.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt/subopt_zuker.o -fopenmp 2025-12-07T06:19:05,160 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/treedist.o -fopenmp 2025-12-07T06:19:05,322 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2025-12-07T06:19:05,323 src/ViennaRNA/treedist.c:735:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:19:05,323 735 | for (k = 0; k < strlen(ll); k++) { 2025-12-07T06:19:05,324 | ^ 2025-12-07T06:19:05,325 src/ViennaRNA/treedist.c:756:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:19:05,326 756 | for (k = 0; k < strlen(ll); k++) { 2025-12-07T06:19:05,327 | ^ 2025-12-07T06:19:05,328 src/ViennaRNA/treedist.c:782:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:19:05,329 782 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2025-12-07T06:19:05,329 | ^ 2025-12-07T06:19:05,330 src/ViennaRNA/treedist.c:786:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:19:05,331 786 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2025-12-07T06:19:05,331 | ^ 2025-12-07T06:19:05,332 src/ViennaRNA/treedist.c:789:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:19:05,333 789 | for (k = 0; k < strlen(ll); k++) 2025-12-07T06:19:05,333 | ^ 2025-12-07T06:19:05,334 src/ViennaRNA/treedist.c:791:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-07T06:19:05,335 791 | for (k = 0; k < strlen(ll); k++) 2025-12-07T06:19:05,336 | ^ 2025-12-07T06:19:06,386 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/unstructured_domains.o -fopenmp 2025-12-07T06:19:09,396 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/cpu.o -fopenmp 2025-12-07T06:19:09,584 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2025-12-07T06:19:09,905 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.1\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2025-12-07T06:19:09,922 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2025-12-07T06:19:09,925 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-12-07T06:19:10,027 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2025-12-07T06:19:10,041 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpuxcs8ie8[/] 2025-12-07T06:19:10,041 [bold magenta]cwd[/]: /tmp/pip-wheel-l8le_c_1/viennarna_c8343018a0dc4259b4556d593b44ae39 2025-12-07T06:19:10,042 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2025-12-07T06:19:10,044 ERROR: Failed building wheel for viennarna 2025-12-07T06:19:10,047 Failed to build viennarna 2025-12-07T06:19:10,048 ERROR: Failed to build one or more wheels 2025-12-07T06:19:10,049 Exception information: 2025-12-07T06:19:10,049 Traceback (most recent call last): 2025-12-07T06:19:10,049 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2025-12-07T06:19:10,049 status = run_func(*args) 2025-12-07T06:19:10,049 ^^^^^^^^^^^^^^^ 2025-12-07T06:19:10,049 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2025-12-07T06:19:10,049 return func(self, options, args) 2025-12-07T06:19:10,049 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-12-07T06:19:10,049 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2025-12-07T06:19:10,049 raise CommandError("Failed to build one or more wheels") 2025-12-07T06:19:10,049 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-12-07T06:19:10,054 Removed build tracker: '/tmp/pip-build-tracker-a4mkxxqh'