2025-12-08T19:38:32,654 Created temporary directory: /tmp/pip-ephem-wheel-cache-l71_8eva 2025-12-08T19:38:32,659 Created temporary directory: /tmp/pip-req-tracker-23g2a_ew 2025-12-08T19:38:32,660 Initialized build tracking at /tmp/pip-req-tracker-23g2a_ew 2025-12-08T19:38:32,660 Created build tracker: /tmp/pip-req-tracker-23g2a_ew 2025-12-08T19:38:32,661 Entered build tracker: /tmp/pip-req-tracker-23g2a_ew 2025-12-08T19:38:32,662 Created temporary directory: /tmp/pip-wheel-zk2s8ry4 2025-12-08T19:38:32,708 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2025-12-08T19:38:32,712 2 location(s) to search for versions of rna-tools: 2025-12-08T19:38:32,712 * https://pypi.org/simple/rna-tools/ 2025-12-08T19:38:32,712 * https://www.piwheels.org/simple/rna-tools/ 2025-12-08T19:38:32,713 Fetching project page and analyzing links: https://pypi.org/simple/rna-tools/ 2025-12-08T19:38:32,714 Getting page https://pypi.org/simple/rna-tools/ 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https://files.pythonhosted.org/packages/18/fe/d98457ff763a3d87b7435419ceb97ee5652e29fd30385aef50fb43e222d5/rna_tools-3.17-py3-none-any.whl#sha256=d80363ede865fd3b4a0d28f55a543632960b8523c9a9e52a80ba0f7a32db8665 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,234 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/0d/c9/5973317db1c630f55b73efafa053008e879bc07a26d8102875be6848ebbf/rna_tools-3.18-py3-none-any.whl#sha256=297c7a6452f24702da7d884b732ae4a4718bf712e7ac2b12e7a942950e7d09d2 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,234 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/56/6c/bd8607e69de5e63f72decf4398bee9c90ee391eff6d4451005de8156ca15/rna_tools-3.19-py3-none-any.whl#sha256=50d83ddd0a5bf1db705e7523927ea4ce4c317e9d8b272572fd07deb75a43e347 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,235 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ae/5f/e57ac244bd51cff84868a22eb6a5faf2c1b6b616bcd6b4e9e47c3e1f1c8b/rna_tools-3.20-py3-none-any.whl#sha256=3ffb9db9035ee6e8220ebe89dae244c3083c5c0a1480be81654e24447b78a27b (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,236 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/8b/01/201b394e887e5e7f5b719ed76710649177c687c99e7223a9ea7943266e0e/rna_tools-3.20.1-py3-none-any.whl#sha256=36ec158fd4a74d3567b685c2348c068fd7031c14e7528639f65bddf8ae8674a6 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,236 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1f/f1/2b93875467d8768d8d5964319bf3a942135385be9d4f0ce6a5ff214b7452/rna_tools-3.20.2-py3-none-any.whl#sha256=73a93784cabd7532280fbc55dba075158ed377eb0c97da89a281dd4df8eecd8f (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,237 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/e3/0b/70660cc72263a421156abc6d283440de0e3b2a6a03b26c7d1e5e71016bdd/rna_tools-3.20.3-py3-none-any.whl#sha256=852ba7ea4e369e226f4b5a7fafb8b468c0caa48173a200f3c74b7d95ad09bf66 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,237 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/7a/44/df5a6d5ed9a8ae108122d8677186a371b32377132003b7ca2ec73ecee9e1/rna_tools-3.21-py3-none-any.whl#sha256=4c2ff3d5cf8909a64be9e49c0b0a606663606d077902d806b00a19febc8104a6 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,238 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1b/68/56cf5b177b10d6bfd4d7e50d033553a9ecd4efbbb03568272f1a53b69ed1/rna_tools-3.22-py3-none-any.whl#sha256=d76a2876428848d86302c12377f9f90e9e2cb9062804a871f67b0c6017c5104f (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,238 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1f/ff/b46f4fb145fa3debabee58351371e12335e245d598f627bd6a326daed13e/rna_tools-3.22.1-py3-none-any.whl#sha256=f1b560b7acb3a514e8f905f15f1c7677f9ba09d93bf8cab4b3d2e6e4fde9803c (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,239 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/cc/21/46eb127af883db354478507ef53350958a4b99b2b78b23658bc3daa652f3/rna_tools-3.22.2-py3-none-any.whl#sha256=71701934a1306cea379eaaa1c8a6aa2c1a665c4b8eb6995e4591cb515b88c9bd (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,239 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/53/c5/cbfcb8911f14b963ecd95bc7ed9fd49413bc0454aedd61b8063899d2449d/rna_tools-3.22.3-py3-none-any.whl#sha256=3709f1b0082973994712ab21a981f0d1ce1204b3e2bbd435a1b6235ae1c41f03 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,240 Skipping link: No binaries permitted for rna-tools: 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rna-tools: https://files.pythonhosted.org/packages/77/4c/d5eddc44da8b8f903179877d2e4fd21768acc11776d222be5030fd95d8c7/rna_tools-3.23.1-py3-none-any.whl#sha256=b426cc83f48ffd6920c3dff42ac2a6982fae8d6ba81922c0d6caf8140dfe11f1 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,242 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f7/04/4f4271af4cec16f9d14ad605bb6b934f210cfcf97af831e9e9de6b87c332/rna_tools-3.25-py3-none-any.whl#sha256=ed9fc129931ef876558520a0b9f400cfbac94c8a1576efd083716b170ae601d5 (from https://pypi.org/simple/rna-tools/) 2025-12-08T19:38:33,242 Found link https://files.pythonhosted.org/packages/a8/ed/7a195c3da380f259f526fa808c00ecb2b791636683aa082db6b12fd234cd/rna_tools-3.25.tar.gz#sha256=277c51a75a5e38c4533b8cbe2c594323077a165dd6861bd59ec5127d63103d9e (from https://pypi.org/simple/rna-tools/), version: 3.25 2025-12-08T19:38:33,243 Fetching project page and analyzing links: https://www.piwheels.org/simple/rna-tools/ 2025-12-08T19:38:33,244 Getting page https://www.piwheels.org/simple/rna-tools/ 2025-12-08T19:38:33,246 Found index url https://www.piwheels.org/simple 2025-12-08T19:38:33,250 Starting new HTTPS connection (1): www.piwheels.org:443 2025-12-08T19:38:33,372 https://www.piwheels.org:443 "GET /simple/rna-tools/ HTTP/1.1" 200 484 2025-12-08T19:38:33,388 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/UNKNOWN-0%2Bunknown-py3-none-any.whl#sha256=b4214c42117c74da3961ab3bbaf3ce3e12ea386e102aecb92e8e47c607e842dc (from https://www.piwheels.org/simple/rna-tools/) 2025-12-08T19:38:33,388 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.4-py3-none-any.whl#sha256=1194ddbf480426f804e230eb711eb705a79f41efaf61679c966fd6b7fec65e17 (from https://www.piwheels.org/simple/rna-tools/) 2025-12-08T19:38:33,389 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.3-py3-none-any.whl#sha256=1d45105a5c8cc161b13b088a8e903b5d239701ca023758c17a591a0a0dfb86bb (from https://www.piwheels.org/simple/rna-tools/) 2025-12-08T19:38:33,389 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.2-py3-none-any.whl#sha256=7b92483d69eb10c0a144b20d4a546bc79db74de7e1340d8e204c697b1b7b5e20 (from https://www.piwheels.org/simple/rna-tools/) 2025-12-08T19:38:33,390 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.1-py3-none-any.whl#sha256=c9c26356bd9c8c2b8fef932367a9c0f2982e68353ec6b07872c6762d1654be50 (from https://www.piwheels.org/simple/rna-tools/) 2025-12-08T19:38:33,469 Given no hashes to check 1 links for project 'rna-tools': discarding no candidates 2025-12-08T19:38:33,541 Collecting rna-tools==3.25 2025-12-08T19:38:33,544 Created temporary directory: /tmp/pip-unpack-yf23dxob 2025-12-08T19:38:33,552 Starting new HTTPS connection (1): files.pythonhosted.org:443 2025-12-08T19:38:33,628 https://files.pythonhosted.org:443 "GET /packages/a8/ed/7a195c3da380f259f526fa808c00ecb2b791636683aa082db6b12fd234cd/rna_tools-3.25.tar.gz HTTP/1.1" 200 55860398 2025-12-08T19:38:33,631 Downloading rna_tools-3.25.tar.gz (55.9 MB) 2025-12-08T19:39:00,741 Added rna-tools==3.25 from https://files.pythonhosted.org/packages/a8/ed/7a195c3da380f259f526fa808c00ecb2b791636683aa082db6b12fd234cd/rna_tools-3.25.tar.gz#sha256=277c51a75a5e38c4533b8cbe2c594323077a165dd6861bd59ec5127d63103d9e to build tracker '/tmp/pip-req-tracker-23g2a_ew' 2025-12-08T19:39:00,750 Created temporary directory: /tmp/pip-build-env-r28txli3 2025-12-08T19:39:00,760 Installing build dependencies: started 2025-12-08T19:39:00,761 Running command /usr/bin/python3 /usr/lib/python3/dist-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-r28txli3/overlay --no-warn-script-location -v --no-binary rna-tools --only-binary :none: -i https://pypi.org/simple --extra-index-url https://www.piwheels.org/simple --extra-index-url https://www.piwheels.org/simple --prefer-binary -- 'setuptools<72' wheel 2025-12-08T19:39:10,093 Using pip 20.3.4 from /usr/lib/python3/dist-packages/pip (python 3.9) 2025-12-08T19:39:10,095 Non-user install by explicit request 2025-12-08T19:39:10,690 Created temporary directory: /tmp/pip-ephem-wheel-cache-1k8n1z86 2025-12-08T19:39:10,690 Created build tracker: /tmp/pip-req-tracker-23g2a_ew 2025-12-08T19:39:10,691 Entered build tracker: /tmp/pip-req-tracker-23g2a_ew 2025-12-08T19:39:10,692 Created temporary directory: /tmp/pip-install-wnsi3t_h 2025-12-08T19:39:10,742 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2025-12-08T19:39:10,746 2 location(s) to search for versions of setuptools: 2025-12-08T19:39:10,747 * https://pypi.org/simple/setuptools/ 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https://archive1.piwheels.org/simple/wheel/wheel-0.30.0a0-py2.py3-none-any.whl#sha256=cd19aa9325d3af1c641b0a23502b12696159171d2a2f4b84308df9a075c2a4a0 (from https://www.piwheels.org/simple/wheel/), version: 0.30.0a0 2025-12-08T19:39:27,551 Found link https://www.piwheels.org/simple/wheel/wheel-0.29.0-py2.py3-none-any.whl#sha256=ea8033fc9905804e652f75474d33410a07404c1a78dd3c949a66863bd1050ebd (from https://www.piwheels.org/simple/wheel/), version: 0.29.0 2025-12-08T19:39:27,552 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.28.0-py2.py3-none-any.whl#sha256=7a83f0fd22ccf4137673f21a4fbd6b522e3c826add9568adbf63eb17fb9ec90c (from https://www.piwheels.org/simple/wheel/), version: 0.28.0 2025-12-08T19:39:27,553 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.27.0-py2.py3-none-any.whl#sha256=b2e5cf1b3e5ca7873956bea1fadc160850a89fdb96a22515e72b5e3b61bb9c6a (from https://www.piwheels.org/simple/wheel/), version: 0.27.0 2025-12-08T19:39:27,555 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.26.0-py2.py3-none-any.whl#sha256=c92ed3a2dd87c54a9e20024fb0a206fe591c352c745fff21e8f8c6cdac2086ea (from https://www.piwheels.org/simple/wheel/), version: 0.26.0 2025-12-08T19:39:27,556 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.25.0-py2.py3-none-any.whl#sha256=11d74730000531808916fcc069fb7bb5906caa0dba978b126cc807be8d4319f4 (from https://www.piwheels.org/simple/wheel/), version: 0.25.0 2025-12-08T19:39:27,557 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.24.0-py2.py3-none-any.whl#sha256=53a8b47d3db4ded8db41a1e9bbb77a1625074e7a4879bd0ebf97d6cb01576383 (from https://www.piwheels.org/simple/wheel/), version: 0.24.0 2025-12-08T19:39:27,559 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.23.0-py2.py3-none-any.whl#sha256=cbc6b2e274557b5e8ee8b61ca4c0c781702956a80cdbeb7ec0446834b5078082 (from https://www.piwheels.org/simple/wheel/), version: 0.23.0 2025-12-08T19:39:27,560 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.22.0-py2.py3-none-any.whl#sha256=4ac0ec6404ef2dd3412fcdb1560206eaca86a4c73ff29895989320faca54be61 (from https://www.piwheels.org/simple/wheel/), version: 0.22.0 2025-12-08T19:39:27,561 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.21.0-py2.py3-none-any.whl#sha256=b0798123cd67a763637991812ab866f609a81516228273e89270d4bc91b276cd (from https://www.piwheels.org/simple/wheel/), version: 0.21.0 2025-12-08T19:39:27,562 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.19.0-py2.py3-none-any.whl#sha256=c4393edc51986db56f4ee7ef542e1e183caef570d5e5a6b9021333b21a40683e (from https://www.piwheels.org/simple/wheel/), version: 0.19.0 2025-12-08T19:39:27,564 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.18.0-py2.py3-none-any.whl#sha256=50464317d6baf354a78df94b7a842ce1fe4e5752c9dd3a97c38e3219eeb5fbe8 (from https://www.piwheels.org/simple/wheel/), version: 0.18.0 2025-12-08T19:39:27,565 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.17.0-py2.py3-none-any.whl#sha256=b5affc730154325831d35b4fec11cc2647846443fbbca85dcb056cc0e5f015c7 (from https://www.piwheels.org/simple/wheel/), version: 0.17.0 2025-12-08T19:39:27,566 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.16.0-py2.py3-none-any.whl#sha256=1451499fcc03da0de54eb0d8803f96b2cc94e1cb1f4294e260516442d64531d5 (from https://www.piwheels.org/simple/wheel/), version: 0.16.0 2025-12-08T19:39:27,568 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.15.0-py2.py3-none-any.whl#sha256=c719c414d4a192ee70c85e330421bd022fda91552e40ab74078cfeeeda3a35a1 (from https://www.piwheels.org/simple/wheel/), version: 0.15.0 2025-12-08T19:39:27,569 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.14.0-py2.py3-none-any.whl#sha256=41a973fa2d0a3b007d8afdfa6ca39f6b2f48b336a642c020ea2ffe5ea2ebf426 (from https://www.piwheels.org/simple/wheel/), version: 0.14.0 2025-12-08T19:39:27,570 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.13.0-py2.py3-none-any.whl#sha256=e22c0ee13924fa775a62d493da2abdc5fd8a1f757fa5ca012d4a0c892f5c76ce (from https://www.piwheels.org/simple/wheel/), version: 0.13.0 2025-12-08T19:39:27,572 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.12.0-py2.py3-none-any.whl#sha256=351b5f218032c8822410ecc419e41f5e7c40df4813dc9b17f9bd51a5688225f6 (from https://www.piwheels.org/simple/wheel/), version: 0.12.0 2025-12-08T19:39:27,573 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.11.0-py2.py3-none-any.whl#sha256=10a60ecaff2bde8bc58a04c3bd3e7518fefa4a6d7e7a297780c637f4c75530e9 (from https://www.piwheels.org/simple/wheel/), version: 0.11.0 2025-12-08T19:39:27,574 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.10.3-py2.py3-none-any.whl#sha256=456f150509b57b16a2dfd9c882d8204990fafa55ad9f6410cd6cbb8795237c40 (from https://www.piwheels.org/simple/wheel/), version: 0.10.3 2025-12-08T19:39:27,575 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.10.2-py2.py3-none-any.whl#sha256=abfdc3fb4427901d7faff5c570508089c382ef750a39a520c6ce0f2e2d0b6c94 (from https://www.piwheels.org/simple/wheel/), version: 0.10.2 2025-12-08T19:39:27,577 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.10.1-py2.py3-none-any.whl#sha256=28f16c298102f35850945fad51d46fd094e6c2ba50bd8cdd4e2a7ec1093afbc1 (from https://www.piwheels.org/simple/wheel/), version: 0.10.1 2025-12-08T19:39:27,578 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.10.0-py2.py3-none-any.whl#sha256=dbdb989fd7a99eace561be0443f1c00784a46ac6f6e10233877919a95af3c05a (from https://www.piwheels.org/simple/wheel/), version: 0.10.0 2025-12-08T19:39:27,579 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.9.7-py34-none-any.whl#sha256=2406406008b1d0da37317df1909a155c1cf96a9ae4a3e663823f1a90d5aec89c (from https://www.piwheels.org/simple/wheel/), version: 0.9.7 2025-12-08T19:39:27,581 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.9.5-py2.py3-none-any.whl#sha256=2fafe3ab14e79a5cd4e3e3c8ec901a16e69ba9977ff528e1357afb79fd6adbf4 (from https://www.piwheels.org/simple/wheel/), version: 0.9.5 2025-12-08T19:39:27,582 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.9.4-py34-none-any.whl#sha256=8ff3695583cc355e20d14dfaf74816de5fc2c8b99ae2d7190bd5d37a98698d24 (from https://www.piwheels.org/simple/wheel/), version: 0.9.4 2025-12-08T19:39:27,583 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.9.3-py34-none-any.whl#sha256=c0b9af7ba84a118d162ec37fc78d0c58b823578a82d4c3813d00ee678bf0562c (from https://www.piwheels.org/simple/wheel/), version: 0.9.3 2025-12-08T19:39:27,584 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.9.2-py34-none-any.whl#sha256=27d25bc64b16359de9488c4523b59de2bf609c9e507a7596847e4daaf2c2a2b9 (from https://www.piwheels.org/simple/wheel/), version: 0.9.2 2025-12-08T19:39:27,586 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.9.1-py34-none-any.whl#sha256=c5b5b97b7eba57e6adf1223dd97221321dd75776d403e0394911491f35341195 (from https://www.piwheels.org/simple/wheel/), version: 0.9.1 2025-12-08T19:39:27,587 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.9-py32-none-any.whl#sha256=4698c1d702ca4aa52225920ca53bce0f29576574cf5b7bfa06396487e6deca57 (from https://www.piwheels.org/simple/wheel/), version: 0.9 2025-12-08T19:39:27,588 Found link https://archive1.piwheels.org/simple/wheel/wheel-0.8-py34-none-any.whl#sha256=5c7cbf9b2fc839a7858a7bceb9788f87829ca7963806e0d6a50e7f61c9cab83d (from https://www.piwheels.org/simple/wheel/), version: 0.8 2025-12-08T19:39:27,590 Skipping link: none of the wheel's tags match: py34-noabi-noarch: https://archive1.piwheels.org/simple/wheel/wheel-0.7-py34-noabi-noarch.whl#sha256=19a8d0d2ed586b8b67c22b4c865aeeed398ea1214113179d256b14078a8c0e78 (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,591 Skipping link: none of the wheel's tags match: py34-noabi-noarch: https://archive1.piwheels.org/simple/wheel/wheel-0.6-py34-noabi-noarch.whl#sha256=905534a6b3bec28519ad305b902eeefe4f8e4c524c1f8dc2a671c59ca286e7fb (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,592 Skipping link: none of the wheel's tags match: py34-noabi-noarch: https://archive1.piwheels.org/simple/wheel/wheel-0.5-py34-noabi-noarch.whl#sha256=83f89c21452c9c6ad964d4cce90d41885273b0a95c7b8c44c1ba89fd89c47b7f (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,593 Skipping link: none of the wheel's tags match: py34-noabi-noarch: https://archive1.piwheels.org/simple/wheel/wheel-0.4.2-py34-noabi-noarch.whl#sha256=d9fa12e187f892153b8d544eea6efdfe3454c98ebc5fc55ef678721c8b5c8c42 (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,594 Skipping link: invalid wheel filename: https://archive1.piwheels.org/simple/wheel/wheel_0.4.1-py34-noabi-noarch.whl#sha256=cab5b976203de1a697913a41e64252a352e26734a30c8b49700673f4a8e8f46c (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,594 Skipping link: invalid wheel filename: https://archive1.piwheels.org/simple/wheel/wheel_0.4-py34-noabi-noarch.whl#sha256=84fdd11c0d960611e5821a93b6d041bd6af3c07863a075b8026f10dcd675624d (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,596 Skipping link: none of the wheel's tags match: py34-noabi-noarch: https://archive1.piwheels.org/simple/wheel/wheel-0.3-py34-noabi-noarch.whl#sha256=3a90e79b373e2478c9f126c2a5b922bbeb15010b7381d0fafedfc8a3c56ede9c (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,597 Skipping link: none of the wheel's tags match: py34-noabi-noarch: https://archive1.piwheels.org/simple/wheel/wheel-0.2-py34-noabi-noarch.whl#sha256=0a939ef0343814a3321be3f624fbb14c88e6a2c148e56dd6c19e3f0cc6f550c8 (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,598 Skipping link: none of the wheel's tags match: py34-noabi-noarch: https://archive1.piwheels.org/simple/wheel/wheel-0.1-py34-noabi-noarch.whl#sha256=2925b4da54f70d40cead292dc7921052acbfff72bb331b93237ccc839bff06c9 (from https://www.piwheels.org/simple/wheel/) 2025-12-08T19:39:27,629 Given no hashes to check 211 links for project 'wheel': discarding no candidates 2025-12-08T19:39:28,596 Collecting wheel 2025-12-08T19:39:28,597 Created temporary directory: /tmp/pip-unpack-6mzxe6me 2025-12-08T19:39:28,600 Found index url https://www.piwheels.org/simple 2025-12-08T19:39:28,602 Looking up "https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl" in the cache 2025-12-08T19:39:28,608 Current age based on date: 4841 2025-12-08T19:39:28,619 https://www.piwheels.org:443 "GET /simple/wheel/wheel-0.45.1-py3-none-any.whl HTTP/1.1" 304 0 2025-12-08T19:39:28,637 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-12-08T19:39:28,652 Added wheel from https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl#sha256=708e7481cc80179af0e556bbf0cc00b8444c7321e2700b8d8580231d13017248 to build tracker '/tmp/pip-req-tracker-23g2a_ew' 2025-12-08T19:39:28,654 Removed wheel from https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl#sha256=708e7481cc80179af0e556bbf0cc00b8444c7321e2700b8d8580231d13017248 from build tracker '/tmp/pip-req-tracker-23g2a_ew' 2025-12-08T19:39:29,109 Created temporary directory: /tmp/pip-unpack-cz81l6sp 2025-12-08T19:39:32,718 Installing collected packages: wheel, setuptools 2025-12-08T19:39:33,216 Creating /tmp/pip-build-env-r28txli3/overlay/bin 2025-12-08T19:39:33,219 changing mode of /tmp/pip-build-env-r28txli3/overlay/bin/wheel to 755 2025-12-08T19:39:42,038 Successfully installed setuptools-71.1.0 wheel-0.45.1 2025-12-08T19:39:42,039 Removed build tracker: '/tmp/pip-req-tracker-23g2a_ew' 2025-12-08T19:39:42,381 Installing build dependencies: finished with status 'done' 2025-12-08T19:39:42,392 Getting requirements to build wheel: started 2025-12-08T19:39:42,393 Running command /usr/bin/python3 /tmp/tmph4i3t5uq_in_process.py get_requires_for_build_wheel /tmp/tmpil5ouih0 2025-12-08T19:39:44,522 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-12-08T19:39:44,524 !! 2025-12-08T19:39:44,525 ******************************************************************************** 2025-12-08T19:39:44,525 Usage of dash-separated 'description-file' will not be supported in future 2025-12-08T19:39:44,526 versions. Please use the underscore name 'description_file' instead. 2025-12-08T19:39:44,527 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-12-08T19:39:44,527 or your builds will no longer be supported. 2025-12-08T19:39:44,528 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-12-08T19:39:44,528 ******************************************************************************** 2025-12-08T19:39:44,529 !! 2025-12-08T19:39:44,530 opt = self._enforce_underscore(opt, section) 2025-12-08T19:39:44,592 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-12-08T19:39:44,593 warnings.warn(msg) 2025-12-08T19:39:44,779 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-12-08T19:39:44,779 !! 2025-12-08T19:39:44,780 ******************************************************************************** 2025-12-08T19:39:44,781 Usage of dash-separated 'description-file' will not be supported in future 2025-12-08T19:39:44,781 versions. Please use the underscore name 'description_file' instead. 2025-12-08T19:39:44,782 (Affected: rna_tools). 2025-12-08T19:39:44,783 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-12-08T19:39:44,783 or your builds will no longer be supported. 2025-12-08T19:39:44,784 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-12-08T19:39:44,784 ******************************************************************************** 2025-12-08T19:39:44,785 !! 2025-12-08T19:39:44,786 opt = self._enforce_underscore(opt, section) 2025-12-08T19:39:44,789 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:39:44,790 Try to load it from setup.cfg 2025-12-08T19:39:44,790 running egg_info 2025-12-08T19:39:44,837 writing rna_tools.egg-info/PKG-INFO 2025-12-08T19:39:44,847 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2025-12-08T19:39:44,852 writing requirements to rna_tools.egg-info/requires.txt 2025-12-08T19:39:44,854 writing top-level names to rna_tools.egg-info/top_level.txt 2025-12-08T19:39:45,233 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2025-12-08T19:39:45,953 reading manifest template 'MANIFEST.in' 2025-12-08T19:39:47,617 adding license file 'LICENSE' 2025-12-08T19:39:47,924 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2025-12-08T19:39:47,988 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:39:47,988 Try to load it from setup.cfg 2025-12-08T19:39:48,146 Getting requirements to build wheel: finished with status 'done' 2025-12-08T19:39:48,154 Created temporary directory: /tmp/pip-modern-metadata-jqbh7rtv 2025-12-08T19:39:48,164 Preparing wheel metadata: started 2025-12-08T19:39:48,164 Running command /usr/bin/python3 /tmp/tmpj8qmlobk_in_process.py prepare_metadata_for_build_wheel /tmp/tmpeecc0fdb 2025-12-08T19:39:50,086 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-12-08T19:39:50,088 warnings.warn(msg) 2025-12-08T19:39:50,260 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-12-08T19:39:50,261 !! 2025-12-08T19:39:50,262 ******************************************************************************** 2025-12-08T19:39:50,262 Usage of dash-separated 'description-file' will not be supported in future 2025-12-08T19:39:50,263 versions. Please use the underscore name 'description_file' instead. 2025-12-08T19:39:50,263 (Affected: rna_tools). 2025-12-08T19:39:50,264 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-12-08T19:39:50,264 or your builds will no longer be supported. 2025-12-08T19:39:50,265 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-12-08T19:39:50,266 ******************************************************************************** 2025-12-08T19:39:50,266 !! 2025-12-08T19:39:50,267 opt = self._enforce_underscore(opt, section) 2025-12-08T19:39:50,325 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:39:50,325 Try to load it from setup.cfg 2025-12-08T19:39:50,326 running dist_info 2025-12-08T19:39:50,373 creating /tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info 2025-12-08T19:39:50,375 writing /tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info/PKG-INFO 2025-12-08T19:39:50,384 writing dependency_links to /tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info/dependency_links.txt 2025-12-08T19:39:50,389 writing requirements to /tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info/requires.txt 2025-12-08T19:39:50,392 writing top-level names to /tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info/top_level.txt 2025-12-08T19:39:50,394 writing manifest file '/tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info/SOURCES.txt' 2025-12-08T19:39:50,741 reading manifest file '/tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info/SOURCES.txt' 2025-12-08T19:39:50,746 reading manifest template 'MANIFEST.in' 2025-12-08T19:39:52,485 adding license file 'LICENSE' 2025-12-08T19:39:52,695 writing manifest file '/tmp/pip-modern-metadata-jqbh7rtv/rna_tools.egg-info/SOURCES.txt' 2025-12-08T19:39:52,754 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:39:52,755 Try to load it from setup.cfg 2025-12-08T19:39:52,756 creating '/tmp/pip-modern-metadata-jqbh7rtv/rna_tools-3.25.dist-info' 2025-12-08T19:39:53,012 Preparing wheel metadata: finished with status 'done' 2025-12-08T19:39:53,031 Source in /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b has version 3.25, which satisfies requirement rna-tools==3.25 from https://files.pythonhosted.org/packages/a8/ed/7a195c3da380f259f526fa808c00ecb2b791636683aa082db6b12fd234cd/rna_tools-3.25.tar.gz#sha256=277c51a75a5e38c4533b8cbe2c594323077a165dd6861bd59ec5127d63103d9e 2025-12-08T19:39:53,033 Removed rna-tools==3.25 from https://files.pythonhosted.org/packages/a8/ed/7a195c3da380f259f526fa808c00ecb2b791636683aa082db6b12fd234cd/rna_tools-3.25.tar.gz#sha256=277c51a75a5e38c4533b8cbe2c594323077a165dd6861bd59ec5127d63103d9e from build tracker '/tmp/pip-req-tracker-23g2a_ew' 2025-12-08T19:39:53,050 Created temporary directory: /tmp/pip-unpack-v4_mkrl5 2025-12-08T19:39:53,051 Building wheels for collected packages: rna-tools 2025-12-08T19:39:53,060 Created temporary directory: /tmp/pip-wheel-r7s6t4kh 2025-12-08T19:39:53,061 Destination directory: /tmp/pip-wheel-r7s6t4kh 2025-12-08T19:39:53,069 Building wheel for rna-tools (PEP 517): started 2025-12-08T19:39:53,070 Running command /usr/bin/python3 /tmp/tmpmnoa944j_in_process.py build_wheel /tmp/tmpst12aqi1 2025-12-08T19:39:55,002 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' 2025-12-08T19:39:55,004 warnings.warn(msg) 2025-12-08T19:39:55,177 /usr/local/lib/python3.9/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. 2025-12-08T19:39:55,177 !! 2025-12-08T19:39:55,178 ******************************************************************************** 2025-12-08T19:39:55,179 Usage of dash-separated 'description-file' will not be supported in future 2025-12-08T19:39:55,179 versions. Please use the underscore name 'description_file' instead. 2025-12-08T19:39:55,180 (Affected: rna_tools). 2025-12-08T19:39:55,181 By 2026-Mar-03, you need to update your project and remove deprecated calls 2025-12-08T19:39:55,181 or your builds will no longer be supported. 2025-12-08T19:39:55,182 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2025-12-08T19:39:55,182 ******************************************************************************** 2025-12-08T19:39:55,183 !! 2025-12-08T19:39:55,183 opt = self._enforce_underscore(opt, section) 2025-12-08T19:39:55,196 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:39:55,197 Try to load it from setup.cfg 2025-12-08T19:39:55,197 running bdist_wheel 2025-12-08T19:39:55,329 running build 2025-12-08T19:39:55,330 running build_py 2025-12-08T19:39:55,348 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:39:55,349 Try to load it from setup.cfg 2025-12-08T19:39:55,350 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:39:55,350 Try to load it from setup.cfg 2025-12-08T19:39:55,351 creating build/lib/rna_tools 2025-12-08T19:39:55,352 copying rna_tools/rna_dot2ct.py -> build/lib/rna_tools 2025-12-08T19:39:55,357 copying rna_tools/rna_pdb_tools.py -> build/lib/rna_tools 2025-12-08T19:39:55,363 copying rna_tools/update_readme.py -> build/lib/rna_tools 2025-12-08T19:39:55,367 copying rna_tools/rna_torsions.py -> build/lib/rna_tools 2025-12-08T19:39:55,371 copying rna_tools/__init__.py -> build/lib/rna_tools 2025-12-08T19:39:55,375 copying rna_tools/_version.py -> build/lib/rna_tools 2025-12-08T19:39:55,379 copying rna_tools/BlastPDB.py -> build/lib/rna_tools 2025-12-08T19:39:55,382 copying rna_tools/rna_pdb_inspect.py -> build/lib/rna_tools 2025-12-08T19:39:55,387 copying rna_tools/SecondaryStructure.py -> build/lib/rna_tools 2025-12-08T19:39:55,390 copying rna_tools/stats.py -> build/lib/rna_tools 2025-12-08T19:39:55,394 copying rna_tools/RfamSearch.py -> build/lib/rna_tools 2025-12-08T19:39:55,398 copying rna_tools/rna_calc_fenergy.py -> build/lib/rna_tools 2025-12-08T19:39:55,402 copying rna_tools/rna_simrnaweb_download_job.py -> build/lib/rna_tools 2025-12-08T19:39:55,407 copying rna_tools/rna_tools_config.py -> build/lib/rna_tools 2025-12-08T19:39:55,410 copying rna_tools/rna_pdb_replace.py -> build/lib/rna_tools 2025-12-08T19:39:55,414 copying rna_tools/rna_cif2pdb.py -> build/lib/rna_tools 2025-12-08T19:39:55,419 copying rna_tools/rna_tools_test_all.py -> build/lib/rna_tools 2025-12-08T19:39:55,423 copying rna_tools/rna_secondary_structure_prediction.py -> build/lib/rna_tools 2025-12-08T19:39:55,427 copying rna_tools/rna_tools_lib.py -> build/lib/rna_tools 2025-12-08T19:39:55,436 copying rna_tools/rna_pdb_fetch_header.py -> build/lib/rna_tools 2025-12-08T19:39:55,440 copying rna_tools/Seq.py -> build/lib/rna_tools 2025-12-08T19:39:55,446 copying rna_tools/rna_standardize.py -> build/lib/rna_tools 2025-12-08T19:39:55,450 copying rna_tools/rna_pdb_seq.py -> build/lib/rna_tools 2025-12-08T19:39:55,456 creating build/lib/tests 2025-12-08T19:39:55,457 copying tests/__init__.py -> build/lib/tests 2025-12-08T19:39:55,461 copying tests/test_module.py -> build/lib/tests 2025-12-08T19:39:55,465 creating build/lib/rna_tools/tools 2025-12-08T19:39:55,467 copying rna_tools/tools/__init__.py -> build/lib/rna_tools/tools 2025-12-08T19:39:55,471 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:39:55,473 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:39:55,476 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:39:55,482 creating build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,484 copying rna_tools/tools/simrna_trajectory/__init__.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,488 copying rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,492 copying rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,497 copying rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,500 copying rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,504 copying rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,508 copying rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,512 copying rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,516 copying rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:39:55,521 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:39:55,523 copying rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:39:55,526 copying rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:39:55,531 creating build/lib/rna_tools/tools/ClashCalc 2025-12-08T19:39:55,533 copying rna_tools/tools/ClashCalc/__init__.py -> build/lib/rna_tools/tools/ClashCalc 2025-12-08T19:39:55,537 copying rna_tools/tools/ClashCalc/ClashCalc.py -> build/lib/rna_tools/tools/ClashCalc 2025-12-08T19:39:55,542 creating build/lib/rna_tools/tools/cluster_load 2025-12-08T19:39:55,544 copying rna_tools/tools/cluster_load/__init__.py -> build/lib/rna_tools/tools/cluster_load 2025-12-08T19:39:55,547 copying rna_tools/tools/cluster_load/cluster_load.py -> build/lib/rna_tools/tools/cluster_load 2025-12-08T19:39:55,551 copying rna_tools/tools/cluster_load/cluster_mini_free.py -> build/lib/rna_tools/tools/cluster_load 2025-12-08T19:39:55,557 creating build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,559 copying rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,563 copying rna_tools/tools/rna_filter/__init__.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,566 copying rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,569 copying rna_tools/tools/rna_filter/rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,574 copying rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,577 copying rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,581 copying rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,585 copying rna_tools/tools/rna_filter/rna_get_distances.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,589 copying rna_tools/tools/rna_filter/rna_get_dists.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,594 copying rna_tools/tools/rna_filter/rna_ec2x.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,598 copying rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,603 copying rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,607 copying rna_tools/tools/rna_filter/pymol_dists.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,610 copying rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,614 copying rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,617 copying rna_tools/tools/rna_filter/test_rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,621 copying rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:39:55,625 creating build/lib/rna_tools/tools/clanstix 2025-12-08T19:39:55,627 copying rna_tools/tools/clanstix/rna_clanstix.py -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:39:55,633 copying rna_tools/tools/clanstix/__init__.py -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:39:55,637 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:39:55,639 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:39:55,643 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:39:55,648 creating build/lib/rna_tools/tools/diffpdb 2025-12-08T19:39:55,650 copying rna_tools/tools/diffpdb/diffpdb.py -> build/lib/rna_tools/tools/diffpdb 2025-12-08T19:39:55,654 copying rna_tools/tools/diffpdb/__init__.py -> build/lib/rna_tools/tools/diffpdb 2025-12-08T19:39:55,658 creating build/lib/rna_tools/tools/extra_functions 2025-12-08T19:39:55,660 copying rna_tools/tools/extra_functions/__init__.py -> build/lib/rna_tools/tools/extra_functions 2025-12-08T19:39:55,664 copying rna_tools/tools/extra_functions/select_fragment.py -> build/lib/rna_tools/tools/extra_functions 2025-12-08T19:39:55,668 copying rna_tools/tools/extra_functions/gen_numbering.py -> build/lib/rna_tools/tools/extra_functions 2025-12-08T19:39:55,673 creating build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,675 copying rna_tools/tools/mq/__init__.py -> build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,678 copying rna_tools/tools/mq/rna_mq_plot.py -> build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,682 copying rna_tools/tools/mq/rna_mq_wx_collect.py -> build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,686 copying rna_tools/tools/mq/rna_mq_score.py -> build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,690 copying rna_tools/tools/mq/rna_mq_exp.py -> build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,694 copying rna_tools/tools/mq/rna_mq_collect.py -> build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,700 copying rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/lib/rna_tools/tools/mq 2025-12-08T19:39:55,708 creating build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,710 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,714 copying rna_tools/tools/rna_alignment/test.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,718 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,722 copying rna_tools/tools/rna_alignment/__init__.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,725 copying rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,729 copying rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,733 copying rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,737 copying rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,741 copying rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,745 copying rna_tools/tools/rna_alignment/rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,752 copying rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,757 copying rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,761 copying rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,765 copying rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,769 copying rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,772 copying rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:39:55,777 creating build/lib/rna_tools/tools/rna_helix_vis 2025-12-08T19:39:55,779 copying rna_tools/tools/rna_helix_vis/__init__.py -> build/lib/rna_tools/tools/rna_helix_vis 2025-12-08T19:39:55,782 copying rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/lib/rna_tools/tools/rna_helix_vis 2025-12-08T19:39:55,788 creating build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:39:55,790 copying rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:39:55,793 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:39:55,798 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:39:55,802 creating build/lib/rna_tools/tools/rna_x3dna 2025-12-08T19:39:55,804 copying rna_tools/tools/rna_x3dna/__init__.py -> build/lib/rna_tools/tools/rna_x3dna 2025-12-08T19:39:55,808 copying rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/lib/rna_tools/tools/rna_x3dna 2025-12-08T19:39:55,814 creating build/lib/rna_tools/tools/md 2025-12-08T19:39:55,816 copying rna_tools/tools/md/test.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,820 copying rna_tools/tools/md/rnakb_utils.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,825 copying rna_tools/tools/md/__init__.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,828 copying rna_tools/tools/md/rna_md.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,833 copying rna_tools/tools/md/rna_traj_nohetm.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,837 copying rna_tools/tools/md/rna_traj_range.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,841 copying rna_tools/tools/md/rna_minimize.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,845 copying rna_tools/tools/md/rna_traj_n.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,849 copying rna_tools/tools/md/rna_gromacs_ready.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,852 copying rna_tools/tools/md/rna_get_energy.py -> build/lib/rna_tools/tools/md 2025-12-08T19:39:55,858 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:39:55,860 copying rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:39:55,863 copying rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:39:55,867 copying rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:39:55,872 copying rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:39:55,879 creating build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,881 copying rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,886 copying rna_tools/tools/rna_rosetta/test.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,889 copying rna_tools/tools/rna_rosetta/__init__.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,893 copying rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,897 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,901 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,905 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,909 copying rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,913 copying rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,917 copying rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,921 copying rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,925 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,929 copying rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,933 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,937 copying rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:39:55,942 creating build/lib/rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:39:55,944 copying rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:39:55,948 copying rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:39:55,952 creating build/lib/rna_tools/tools/rna_bp 2025-12-08T19:39:55,954 copying rna_tools/tools/rna_bp/base_pair.py -> build/lib/rna_tools/tools/rna_bp 2025-12-08T19:39:55,959 copying rna_tools/tools/rna_bp/__init__.py -> build/lib/rna_tools/tools/rna_bp 2025-12-08T19:39:55,963 creating build/lib/rna_tools/tools/pymol_drawing 2025-12-08T19:39:55,965 copying rna_tools/tools/pymol_drawing/__init__.py -> build/lib/rna_tools/tools/pymol_drawing 2025-12-08T19:39:55,969 copying rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/lib/rna_tools/tools/pymol_drawing 2025-12-08T19:39:55,975 creating build/lib/rna_tools/tools/plotting 2025-12-08T19:39:55,977 copying rna_tools/tools/plotting/__init__.py -> build/lib/rna_tools/tools/plotting 2025-12-08T19:39:55,981 copying rna_tools/tools/plotting/rna_plot_dendogram.py -> build/lib/rna_tools/tools/plotting 2025-12-08T19:39:55,985 copying rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/lib/rna_tools/tools/plotting 2025-12-08T19:39:55,989 copying rna_tools/tools/plotting/rna_plot_density.py -> build/lib/rna_tools/tools/plotting 2025-12-08T19:39:55,992 copying rna_tools/tools/plotting/rna_plot_hist.py -> build/lib/rna_tools/tools/plotting 2025-12-08T19:39:55,997 copying rna_tools/tools/plotting/rna_plot_heatmap.py -> build/lib/rna_tools/tools/plotting 2025-12-08T19:39:56,002 creating build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:39:56,004 copying rna_tools/tools/rna_calc_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:39:56,007 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:39:56,011 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:39:56,016 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:39:56,021 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:39:56,025 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:39:56,031 creating build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,033 copying rna_tools/tools/misc/rna_ok_mail.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,037 copying rna_tools/tools/misc/__init__.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,040 copying rna_tools/tools/misc/rna_topdb.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,043 copying rna_tools/tools/misc/rna_tools_demo.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,047 copying rna_tools/tools/misc/rna_remote_run.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,051 copying rna_tools/tools/misc/rna_tools_which.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,055 copying rna_tools/tools/misc/reverse.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,058 copying rna_tools/tools/misc/rna_dict2fasta.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,062 copying rna_tools/tools/misc/rna_test_cuda.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,066 copying rna_tools/tools/misc/translate.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,070 copying rna_tools/tools/misc/rna_add_chain.py -> build/lib/rna_tools/tools/misc 2025-12-08T19:39:56,074 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:39:56,076 copying rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:39:56,080 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:39:56,084 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:39:56,088 creating build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:39:56,090 copying rna_tools/tools/mini_moderna3/__init__.py -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:39:56,095 creating build/lib/rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:39:56,097 copying rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:39:56,101 copying rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:39:56,106 creating build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:39:56,108 copying rna_tools/tools/pdb_formatix/__init__.py -> build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:39:56,112 copying rna_tools/tools/pdb_formatix/PDBFile.py -> build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:39:56,116 copying rna_tools/tools/pdb_formatix/rebuilder.py -> build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:39:56,120 copying rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:39:56,124 copying rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:39:56,127 copying rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:39:56,132 creating build/lib/rna_tools/tools/clarna_play 2025-12-08T19:39:56,134 copying rna_tools/tools/clarna_play/__init__.py -> build/lib/rna_tools/tools/clarna_play 2025-12-08T19:39:56,137 copying rna_tools/tools/clarna_play/PDBSeq.py -> build/lib/rna_tools/tools/clarna_play 2025-12-08T19:39:56,142 copying rna_tools/tools/clarna_play/rna_clarna_run.py -> build/lib/rna_tools/tools/clarna_play 2025-12-08T19:39:56,148 copying rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/lib/rna_tools/tools/clarna_play 2025-12-08T19:39:56,157 creating build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,158 copying rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,163 copying rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,168 copying rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,173 copying rna_tools/tools/PyMOL4RNA/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,176 copying rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,180 copying rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,184 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,189 copying rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,196 copying rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:39:56,202 creating build/lib/rna_tools/tools/rna_refinement 2025-12-08T19:39:56,203 copying rna_tools/tools/rna_refinement/__init__.py -> build/lib/rna_tools/tools/rna_refinement 2025-12-08T19:39:56,207 copying rna_tools/tools/rna_refinement/rna_refinement.py -> build/lib/rna_tools/tools/rna_refinement 2025-12-08T19:39:56,212 creating build/lib/rna_tools/tools/rna_prediction_significance 2025-12-08T19:39:56,214 copying rna_tools/tools/rna_prediction_significance/__init__.py -> build/lib/rna_tools/tools/rna_prediction_significance 2025-12-08T19:39:56,217 copying rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/lib/rna_tools/tools/rna_prediction_significance 2025-12-08T19:39:56,222 creating build/lib/rna_tools/tools/clarna_app 2025-12-08T19:39:56,224 copying rna_tools/tools/clarna_app/test.py -> build/lib/rna_tools/tools/clarna_app 2025-12-08T19:39:56,228 copying rna_tools/tools/clarna_app/rna_clarna_app.py -> build/lib/rna_tools/tools/clarna_app 2025-12-08T19:39:56,232 copying rna_tools/tools/clarna_app/__init__.py -> build/lib/rna_tools/tools/clarna_app 2025-12-08T19:39:56,236 copying rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/lib/rna_tools/tools/clarna_app 2025-12-08T19:39:56,240 creating build/lib/rna_tools/tools/rna_calc_inf 2025-12-08T19:39:56,242 copying rna_tools/tools/rna_calc_inf/__init__.py -> build/lib/rna_tools/tools/rna_calc_inf 2025-12-08T19:39:56,246 copying rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/lib/rna_tools/tools/rna_calc_inf 2025-12-08T19:39:56,251 copying rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/lib/rna_tools/tools/rna_calc_inf 2025-12-08T19:39:56,257 creating build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,258 copying rna_tools/tools/webserver-engine/__init__.py -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,262 copying rna_tools/tools/webserver-engine/sendmail.py -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,266 copying rna_tools/tools/webserver-engine/cleanup.py -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,270 copying rna_tools/tools/webserver-engine/daemon.py -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,274 copying rna_tools/tools/webserver-engine/wsgi.py -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,278 copying rna_tools/tools/webserver-engine/checker.py -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,282 copying rna_tools/tools/webserver-engine/manage.py -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:39:56,287 creating build/lib/rna_tools/tools/mq/eSCORE 2025-12-08T19:39:56,289 copying rna_tools/tools/mq/eSCORE/__init__.py -> build/lib/rna_tools/tools/mq/eSCORE 2025-12-08T19:39:56,292 copying rna_tools/tools/mq/eSCORE/eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2025-12-08T19:39:56,296 copying rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2025-12-08T19:39:56,300 creating build/lib/rna_tools/tools/mq/FARFAR2 2025-12-08T19:39:56,302 copying rna_tools/tools/mq/FARFAR2/__init__.py -> build/lib/rna_tools/tools/mq/FARFAR2 2025-12-08T19:39:56,306 copying rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2025-12-08T19:39:56,310 copying rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2025-12-08T19:39:56,316 creating build/lib/rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:39:56,317 copying rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:39:56,321 copying rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:39:56,324 copying rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:39:56,330 creating build/lib/rna_tools/tools/mq/ClashScore 2025-12-08T19:39:56,332 copying rna_tools/tools/mq/ClashScore/__init__.py -> build/lib/rna_tools/tools/mq/ClashScore 2025-12-08T19:39:56,335 copying rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/lib/rna_tools/tools/mq/ClashScore 2025-12-08T19:39:56,339 copying rna_tools/tools/mq/ClashScore/ClashScore.py -> build/lib/rna_tools/tools/mq/ClashScore 2025-12-08T19:39:56,343 creating build/lib/rna_tools/tools/mq/Dfire 2025-12-08T19:39:56,345 copying rna_tools/tools/mq/Dfire/__init__.py -> build/lib/rna_tools/tools/mq/Dfire 2025-12-08T19:39:56,349 copying rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2025-12-08T19:39:56,352 copying rna_tools/tools/mq/Dfire/Dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2025-12-08T19:39:56,357 creating build/lib/rna_tools/tools/mq/rsRNASP 2025-12-08T19:39:56,359 copying rna_tools/tools/mq/rsRNASP/__init__.py -> build/lib/rna_tools/tools/mq/rsRNASP 2025-12-08T19:39:56,363 copying rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2025-12-08T19:39:56,367 copying rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2025-12-08T19:39:56,371 creating build/lib/rna_tools/tools/mq/RASP 2025-12-08T19:39:56,373 copying rna_tools/tools/mq/RASP/test.py -> build/lib/rna_tools/tools/mq/RASP 2025-12-08T19:39:56,377 copying rna_tools/tools/mq/RASP/__init__.py -> build/lib/rna_tools/tools/mq/RASP 2025-12-08T19:39:56,380 copying rna_tools/tools/mq/RASP/RASP.py -> build/lib/rna_tools/tools/mq/RASP 2025-12-08T19:39:56,385 copying rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/lib/rna_tools/tools/mq/RASP 2025-12-08T19:39:56,388 copying rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/lib/rna_tools/tools/mq/RASP 2025-12-08T19:39:56,393 creating build/lib/rna_tools/tools/mq/SimRNA 2025-12-08T19:39:56,395 copying rna_tools/tools/mq/SimRNA/__init__.py -> build/lib/rna_tools/tools/mq/SimRNA 2025-12-08T19:39:56,398 copying rna_tools/tools/mq/SimRNA/SimRNA.py -> build/lib/rna_tools/tools/mq/SimRNA 2025-12-08T19:39:56,403 copying rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/lib/rna_tools/tools/mq/SimRNA 2025-12-08T19:39:56,408 creating build/lib/rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:39:56,410 copying rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:39:56,413 copying rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:39:56,417 copying rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:39:56,422 creating build/lib/rna_tools/tools/mq/QRNAS 2025-12-08T19:39:56,424 copying rna_tools/tools/mq/QRNAS/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS 2025-12-08T19:39:56,427 copying rna_tools/tools/mq/QRNAS/QRNAS.py -> build/lib/rna_tools/tools/mq/QRNAS 2025-12-08T19:39:56,432 creating build/lib/rna_tools/tools/mq/RNAscore 2025-12-08T19:39:56,434 copying rna_tools/tools/mq/RNAscore/__init__.py -> build/lib/rna_tools/tools/mq/RNAscore 2025-12-08T19:39:56,438 copying rna_tools/tools/mq/RNAscore/RNAscore.py -> build/lib/rna_tools/tools/mq/RNAscore 2025-12-08T19:39:56,443 creating build/lib/rna_tools/tools/mq/RNAkb 2025-12-08T19:39:56,445 copying rna_tools/tools/mq/RNAkb/__init__.py -> build/lib/rna_tools/tools/mq/RNAkb 2025-12-08T19:39:56,449 copying rna_tools/tools/mq/RNAkb/RNAkb.py -> build/lib/rna_tools/tools/mq/RNAkb 2025-12-08T19:39:56,453 copying rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/lib/rna_tools/tools/mq/RNAkb 2025-12-08T19:39:56,458 creating build/lib/rna_tools/tools/mq/lib 2025-12-08T19:39:56,460 copying rna_tools/tools/mq/lib/__init__.py -> build/lib/rna_tools/tools/mq/lib 2025-12-08T19:39:56,464 creating build/lib/rna_tools/tools/mq/FARNA 2025-12-08T19:39:56,467 copying rna_tools/tools/mq/FARNA/__init__.py -> build/lib/rna_tools/tools/mq/FARNA 2025-12-08T19:39:56,470 copying rna_tools/tools/mq/FARNA/FARNA.py -> build/lib/rna_tools/tools/mq/FARNA 2025-12-08T19:39:56,475 copying rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/lib/rna_tools/tools/mq/FARNA 2025-12-08T19:39:56,480 creating build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:39:56,482 copying rna_tools/tools/mq/RASP/test/test.py -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:39:56,487 copying rna_tools/tools/mq/RASP/test/__init__.py -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:39:56,491 creating build/lib/rna_tools/tools/mq/QRNAS/test 2025-12-08T19:39:56,493 copying rna_tools/tools/mq/QRNAS/test/test.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2025-12-08T19:39:56,497 copying rna_tools/tools/mq/QRNAS/test/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2025-12-08T19:39:56,502 creating build/lib/rna_tools/tools/mq/lib/wrappers 2025-12-08T19:39:56,504 copying rna_tools/tools/mq/lib/wrappers/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2025-12-08T19:39:56,507 copying rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2025-12-08T19:39:56,512 copying rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2025-12-08T19:39:56,517 creating build/lib/rna_tools/tools/mq/lib/timex 2025-12-08T19:39:56,519 copying rna_tools/tools/mq/lib/timex/__init__.py -> build/lib/rna_tools/tools/mq/lib/timex 2025-12-08T19:39:56,522 copying rna_tools/tools/mq/lib/timex/timex.py -> build/lib/rna_tools/tools/mq/lib/timex 2025-12-08T19:39:56,527 creating build/lib/rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:39:56,529 copying rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:39:56,532 copying rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:39:56,538 creating build/lib/rna_tools/tools/mq/lib/wrappers/test 2025-12-08T19:39:56,540 copying rna_tools/tools/mq/lib/wrappers/test/test.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2025-12-08T19:39:56,544 copying rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2025-12-08T19:39:56,549 creating build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,551 copying rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,556 copying rna_tools/tools/rna_alignment/utils/__init__.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,559 copying rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,563 copying rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,567 copying rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,571 copying rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,575 copying rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,579 copying rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,584 copying rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:39:56,589 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib 2025-12-08T19:39:56,591 copying rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib 2025-12-08T19:39:56,595 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:39:56,597 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:39:56,600 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:39:56,608 creating build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,610 copying rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,614 copying rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,618 copying rna_tools/tools/mini_moderna3/moderna/_version.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,623 copying rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,628 copying rna_tools/tools/mini_moderna3/moderna/Template.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,632 copying rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,637 copying rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,642 copying rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,647 copying rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,651 copying rna_tools/tools/mini_moderna3/moderna/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,657 copying rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,662 copying rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,667 copying rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,671 copying rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,677 copying rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,682 copying rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,686 copying rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,690 copying rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,695 copying rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:39:56,700 creating build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,703 copying rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,708 copying rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,712 copying rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,716 copying rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,720 copying rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,724 copying rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,728 copying rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:39:56,733 creating build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2025-12-08T19:39:56,735 copying rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2025-12-08T19:39:56,738 copying rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2025-12-08T19:39:56,744 creating build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:39:56,746 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:39:56,749 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:39:56,754 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:39:56,760 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:39:56,764 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:39:56,770 creating build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:39:56,772 copying rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:39:56,776 copying rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:39:56,781 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:39:56,785 copying rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:39:56,789 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:39:56,793 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:39:56,798 creating build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:39:56,800 copying rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:39:56,803 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:39:56,808 copying rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:39:56,813 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:39:56,820 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,823 copying rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,828 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,834 copying rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,838 copying rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,844 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,851 copying rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,856 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,861 copying rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,866 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,871 copying rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,876 copying rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,881 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,887 copying rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,893 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,899 copying rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,906 copying rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,909 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:39:56,916 creating build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:39:56,918 copying rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:39:56,922 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:39:56,928 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:39:56,933 copying rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:39:56,938 copying rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:39:56,944 copying rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:39:56,950 creating build/lib/rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:39:56,953 copying rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:39:56,958 copying rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:39:56,962 copying rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:39:56,967 copying rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:39:56,971 copying rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:39:56,977 creating build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:39:56,980 copying rna_tools/tools/pdb_formatix/test/test.py -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:39:56,986 copying rna_tools/tools/pdb_formatix/test/__init__.py -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:39:56,992 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:56,994 copying rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:56,999 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:57,002 copying rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:57,009 copying rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:57,015 copying rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:57,020 copying rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:57,028 copying rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:57,032 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:39:57,037 creating build/lib/rna_tools/tools/clarna_play/lib 2025-12-08T19:39:57,039 copying rna_tools/tools/clarna_play/lib/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib 2025-12-08T19:39:57,043 creating build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:39:57,045 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:39:57,049 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:39:57,054 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:39:57,060 creating build/lib/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:39:57,062 copying rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:39:57,066 copying rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:39:57,069 copying rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:39:57,074 copying rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:39:57,078 copying rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:39:57,082 copying rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:39:57,088 creating build/lib/rna_tools/tools/webserver-engine/django_extensions 2025-12-08T19:39:57,090 copying rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/lib/rna_tools/tools/webserver-engine/django_extensions 2025-12-08T19:39:57,094 creating build/lib/rna_tools/tools/webserver-engine/app 2025-12-08T19:39:57,096 copying rna_tools/tools/webserver-engine/app/__init__.py -> build/lib/rna_tools/tools/webserver-engine/app 2025-12-08T19:39:57,100 copying rna_tools/tools/webserver-engine/app/models.py -> build/lib/rna_tools/tools/webserver-engine/app 2025-12-08T19:39:57,104 copying rna_tools/tools/webserver-engine/app/admin.py -> build/lib/rna_tools/tools/webserver-engine/app 2025-12-08T19:39:57,108 copying rna_tools/tools/webserver-engine/app/views.py -> build/lib/rna_tools/tools/webserver-engine/app 2025-12-08T19:39:57,116 creating build/lib/rna_tools/tools/webserver-engine/web 2025-12-08T19:39:57,117 copying rna_tools/tools/webserver-engine/web/__init__.py -> build/lib/rna_tools/tools/webserver-engine/web 2025-12-08T19:39:57,121 copying rna_tools/tools/webserver-engine/web/wsgi.py -> build/lib/rna_tools/tools/webserver-engine/web 2025-12-08T19:39:57,125 copying rna_tools/tools/webserver-engine/web/settings.py -> build/lib/rna_tools/tools/webserver-engine/web 2025-12-08T19:39:57,130 copying rna_tools/tools/webserver-engine/web/urls.py -> build/lib/rna_tools/tools/webserver-engine/web 2025-12-08T19:39:57,135 running egg_info 2025-12-08T19:39:57,182 writing rna_tools.egg-info/PKG-INFO 2025-12-08T19:39:57,190 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2025-12-08T19:39:57,194 writing requirements to rna_tools.egg-info/requires.txt 2025-12-08T19:39:57,196 writing top-level names to rna_tools.egg-info/top_level.txt 2025-12-08T19:39:57,446 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2025-12-08T19:39:57,951 reading manifest template 'MANIFEST.in' 2025-12-08T19:39:59,516 adding license file 'LICENSE' 2025-12-08T19:39:59,824 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2025-12-08T19:39:59,889 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.data' is absent from the `packages` configuration. 2025-12-08T19:39:59,890 !! 2025-12-08T19:39:59,891 ******************************************************************************** 2025-12-08T19:39:59,891 ############################ 2025-12-08T19:39:59,892 # Package would be ignored # 2025-12-08T19:39:59,892 ############################ 2025-12-08T19:39:59,893 Python recognizes 'rna_tools.data' as an importable package[^1], 2025-12-08T19:39:59,893 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:39:59,894 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:39:59,895 package, please make sure that 'rna_tools.data' is explicitly added 2025-12-08T19:39:59,895 to the `packages` configuration field. 2025-12-08T19:39:59,896 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:39:59,896 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:39:59,897 instead of `find_packages(...)`/`find:`). 2025-12-08T19:39:59,898 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:39:59,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:39:59,899 If you don't want 'rna_tools.data' to be distributed and are 2025-12-08T19:39:59,900 already explicitly excluding 'rna_tools.data' via 2025-12-08T19:39:59,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:39:59,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:39:59,901 combination with a more fine grained `package-data` configuration. 2025-12-08T19:39:59,902 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:39:59,902 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:39:59,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:39:59,904 even if it does not contain any `.py` files. 2025-12-08T19:39:59,904 On the other hand, currently there is no concept of package data 2025-12-08T19:39:59,905 directory, all directories are treated like packages. 2025-12-08T19:39:59,905 ******************************************************************************** 2025-12-08T19:39:59,906 !! 2025-12-08T19:39:59,907 check.warn(importable) 2025-12-08T19:39:59,907 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tests' is absent from the `packages` configuration. 2025-12-08T19:39:59,907 !! 2025-12-08T19:39:59,908 ******************************************************************************** 2025-12-08T19:39:59,909 ############################ 2025-12-08T19:39:59,909 # Package would be ignored # 2025-12-08T19:39:59,909 ############################ 2025-12-08T19:39:59,910 Python recognizes 'rna_tools.tests' as an importable package[^1], 2025-12-08T19:39:59,910 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:39:59,911 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:39:59,911 package, please make sure that 'rna_tools.tests' is explicitly added 2025-12-08T19:39:59,912 to the `packages` configuration field. 2025-12-08T19:39:59,913 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:39:59,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:39:59,913 instead of `find_packages(...)`/`find:`). 2025-12-08T19:39:59,914 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:39:59,915 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:39:59,916 If you don't want 'rna_tools.tests' to be distributed and are 2025-12-08T19:39:59,916 already explicitly excluding 'rna_tools.tests' via 2025-12-08T19:39:59,917 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:39:59,917 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:39:59,918 combination with a more fine grained `package-data` configuration. 2025-12-08T19:39:59,918 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:39:59,919 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:39:59,920 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:39:59,921 even if it does not contain any `.py` files. 2025-12-08T19:39:59,921 On the other hand, currently there is no concept of package data 2025-12-08T19:39:59,922 directory, all directories are treated like packages. 2025-12-08T19:39:59,922 ******************************************************************************** 2025-12-08T19:39:59,923 !! 2025-12-08T19:39:59,923 check.warn(importable) 2025-12-08T19:39:59,923 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tests.test_import_module' is absent from the `packages` configuration. 2025-12-08T19:39:59,924 !! 2025-12-08T19:39:59,925 ******************************************************************************** 2025-12-08T19:39:59,925 ############################ 2025-12-08T19:39:59,925 # Package would be ignored # 2025-12-08T19:39:59,926 ############################ 2025-12-08T19:39:59,926 Python recognizes 'rna_tools.tests.test_import_module' as an importable package[^1], 2025-12-08T19:39:59,927 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:39:59,927 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:39:59,928 package, please make sure that 'rna_tools.tests.test_import_module' is explicitly added 2025-12-08T19:39:59,928 to the `packages` configuration field. 2025-12-08T19:39:59,929 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:39:59,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:39:59,929 instead of `find_packages(...)`/`find:`). 2025-12-08T19:39:59,930 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:39:59,931 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:39:59,932 If you don't want 'rna_tools.tests.test_import_module' to be distributed and are 2025-12-08T19:39:59,932 already explicitly excluding 'rna_tools.tests.test_import_module' via 2025-12-08T19:39:59,932 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:39:59,933 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:39:59,933 combination with a more fine grained `package-data` configuration. 2025-12-08T19:39:59,934 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:39:59,935 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:39:59,936 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:39:59,936 even if it does not contain any `.py` files. 2025-12-08T19:39:59,936 On the other hand, currently there is no concept of package data 2025-12-08T19:39:59,937 directory, all directories are treated like packages. 2025-12-08T19:39:59,937 ******************************************************************************** 2025-12-08T19:39:59,938 !! 2025-12-08T19:39:59,938 check.warn(importable) 2025-12-08T19:39:59,939 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tests.test_import_module.test_data' is absent from the `packages` configuration. 2025-12-08T19:39:59,939 !! 2025-12-08T19:39:59,940 ******************************************************************************** 2025-12-08T19:39:59,940 ############################ 2025-12-08T19:39:59,941 # Package would be ignored # 2025-12-08T19:39:59,941 ############################ 2025-12-08T19:39:59,942 Python recognizes 'rna_tools.tests.test_import_module.test_data' as an importable package[^1], 2025-12-08T19:39:59,942 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:39:59,943 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:39:59,943 package, please make sure that 'rna_tools.tests.test_import_module.test_data' is explicitly added 2025-12-08T19:39:59,944 to the `packages` configuration field. 2025-12-08T19:39:59,945 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:39:59,945 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:39:59,945 instead of `find_packages(...)`/`find:`). 2025-12-08T19:39:59,946 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:39:59,947 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:39:59,948 If you don't want 'rna_tools.tests.test_import_module.test_data' to be distributed and are 2025-12-08T19:39:59,948 already explicitly excluding 'rna_tools.tests.test_import_module.test_data' via 2025-12-08T19:39:59,948 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:39:59,949 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:39:59,949 combination with a more fine grained `package-data` configuration. 2025-12-08T19:39:59,950 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:39:59,950 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:39:59,952 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:39:59,952 even if it does not contain any `.py` files. 2025-12-08T19:39:59,952 On the other hand, currently there is no concept of package data 2025-12-08T19:39:59,953 directory, all directories are treated like packages. 2025-12-08T19:39:59,953 ******************************************************************************** 2025-12-08T19:39:59,954 !! 2025-12-08T19:39:59,954 check.warn(importable) 2025-12-08T19:39:59,954 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.ClashCalc.test_data' is absent from the `packages` configuration. 2025-12-08T19:39:59,955 !! 2025-12-08T19:39:59,956 ******************************************************************************** 2025-12-08T19:39:59,956 ############################ 2025-12-08T19:39:59,956 # Package would be ignored # 2025-12-08T19:39:59,957 ############################ 2025-12-08T19:39:59,957 Python recognizes 'rna_tools.tools.ClashCalc.test_data' as an importable package[^1], 2025-12-08T19:39:59,957 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:39:59,958 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:39:59,958 package, please make sure that 'rna_tools.tools.ClashCalc.test_data' is explicitly added 2025-12-08T19:39:59,959 to the `packages` configuration field. 2025-12-08T19:39:59,960 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:39:59,960 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:39:59,960 instead of `find_packages(...)`/`find:`). 2025-12-08T19:39:59,961 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:39:59,962 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:39:59,962 If you don't want 'rna_tools.tools.ClashCalc.test_data' to be distributed and are 2025-12-08T19:39:59,963 already explicitly excluding 'rna_tools.tools.ClashCalc.test_data' via 2025-12-08T19:39:59,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:39:59,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:39:59,964 combination with a more fine grained `package-data` configuration. 2025-12-08T19:39:59,965 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:39:59,965 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:39:59,966 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:39:59,967 even if it does not contain any `.py` files. 2025-12-08T19:39:59,967 On the other hand, currently there is no concept of package data 2025-12-08T19:39:59,968 directory, all directories are treated like packages. 2025-12-08T19:39:59,968 ******************************************************************************** 2025-12-08T19:39:59,969 !! 2025-12-08T19:39:59,969 check.warn(importable) 2025-12-08T19:39:59,970 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.PyMOL4RNA.doc' is absent from the `packages` configuration. 2025-12-08T19:39:59,970 !! 2025-12-08T19:39:59,971 ******************************************************************************** 2025-12-08T19:39:59,971 ############################ 2025-12-08T19:39:59,971 # Package would be ignored # 2025-12-08T19:39:59,972 ############################ 2025-12-08T19:39:59,972 Python recognizes 'rna_tools.tools.PyMOL4RNA.doc' as an importable package[^1], 2025-12-08T19:39:59,973 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:39:59,973 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:39:59,974 package, please make sure that 'rna_tools.tools.PyMOL4RNA.doc' is explicitly added 2025-12-08T19:39:59,974 to the `packages` configuration field. 2025-12-08T19:39:59,975 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:39:59,975 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:39:59,976 instead of `find_packages(...)`/`find:`). 2025-12-08T19:39:59,976 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:39:59,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:39:59,978 If you don't want 'rna_tools.tools.PyMOL4RNA.doc' to be distributed and are 2025-12-08T19:39:59,978 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.doc' via 2025-12-08T19:39:59,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:39:59,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:39:59,979 combination with a more fine grained `package-data` configuration. 2025-12-08T19:39:59,980 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:39:59,981 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:39:59,982 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:39:59,982 even if it does not contain any `.py` files. 2025-12-08T19:39:59,982 On the other hand, currently there is no concept of package data 2025-12-08T19:39:59,983 directory, all directories are treated like packages. 2025-12-08T19:39:59,983 ******************************************************************************** 2025-12-08T19:39:59,984 !! 2025-12-08T19:39:59,984 check.warn(importable) 2025-12-08T19:39:59,985 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.PyMOL4RNA.test_data' is absent from the `packages` configuration. 2025-12-08T19:39:59,985 !! 2025-12-08T19:39:59,986 ******************************************************************************** 2025-12-08T19:39:59,986 ############################ 2025-12-08T19:39:59,986 # Package would be ignored # 2025-12-08T19:39:59,987 ############################ 2025-12-08T19:39:59,987 Python recognizes 'rna_tools.tools.PyMOL4RNA.test_data' as an importable package[^1], 2025-12-08T19:39:59,988 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:39:59,988 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:39:59,989 package, please make sure that 'rna_tools.tools.PyMOL4RNA.test_data' is explicitly added 2025-12-08T19:39:59,989 to the `packages` configuration field. 2025-12-08T19:39:59,990 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:39:59,990 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:39:59,990 instead of `find_packages(...)`/`find:`). 2025-12-08T19:39:59,991 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:39:59,992 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:39:59,993 If you don't want 'rna_tools.tools.PyMOL4RNA.test_data' to be distributed and are 2025-12-08T19:39:59,993 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.test_data' via 2025-12-08T19:39:59,993 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:39:59,994 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:39:59,994 combination with a more fine grained `package-data` configuration. 2025-12-08T19:39:59,995 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:39:59,996 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:39:59,997 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:39:59,997 even if it does not contain any `.py` files. 2025-12-08T19:39:59,998 On the other hand, currently there is no concept of package data 2025-12-08T19:39:59,998 directory, all directories are treated like packages. 2025-12-08T19:39:59,999 ******************************************************************************** 2025-12-08T19:39:59,999 !! 2025-12-08T19:39:59,1000 check.warn(importable) 2025-12-08T19:40:00,000 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clanstix.doc' is absent from the `packages` configuration. 2025-12-08T19:40:00,000 !! 2025-12-08T19:40:00,001 ******************************************************************************** 2025-12-08T19:40:00,002 ############################ 2025-12-08T19:40:00,002 # Package would be ignored # 2025-12-08T19:40:00,002 ############################ 2025-12-08T19:40:00,003 Python recognizes 'rna_tools.tools.clanstix.doc' as an importable package[^1], 2025-12-08T19:40:00,003 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,004 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,004 package, please make sure that 'rna_tools.tools.clanstix.doc' is explicitly added 2025-12-08T19:40:00,005 to the `packages` configuration field. 2025-12-08T19:40:00,005 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,006 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,006 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,007 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,008 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,008 If you don't want 'rna_tools.tools.clanstix.doc' to be distributed and are 2025-12-08T19:40:00,009 already explicitly excluding 'rna_tools.tools.clanstix.doc' via 2025-12-08T19:40:00,009 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,010 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,010 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,011 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,011 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,012 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,013 even if it does not contain any `.py` files. 2025-12-08T19:40:00,013 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,013 directory, all directories are treated like packages. 2025-12-08T19:40:00,014 ******************************************************************************** 2025-12-08T19:40:00,015 !! 2025-12-08T19:40:00,015 check.warn(importable) 2025-12-08T19:40:00,015 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clanstix.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,016 !! 2025-12-08T19:40:00,016 ******************************************************************************** 2025-12-08T19:40:00,017 ############################ 2025-12-08T19:40:00,017 # Package would be ignored # 2025-12-08T19:40:00,018 ############################ 2025-12-08T19:40:00,018 Python recognizes 'rna_tools.tools.clanstix.test_data' as an importable package[^1], 2025-12-08T19:40:00,018 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,019 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,019 package, please make sure that 'rna_tools.tools.clanstix.test_data' is explicitly added 2025-12-08T19:40:00,020 to the `packages` configuration field. 2025-12-08T19:40:00,020 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,021 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,022 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,023 If you don't want 'rna_tools.tools.clanstix.test_data' to be distributed and are 2025-12-08T19:40:00,024 already explicitly excluding 'rna_tools.tools.clanstix.test_data' via 2025-12-08T19:40:00,024 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,024 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,025 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,026 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,026 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,028 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,028 even if it does not contain any `.py` files. 2025-12-08T19:40:00,028 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,029 directory, all directories are treated like packages. 2025-12-08T19:40:00,029 ******************************************************************************** 2025-12-08T19:40:00,030 !! 2025-12-08T19:40:00,030 check.warn(importable) 2025-12-08T19:40:00,031 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clanstix.test_data.rp17_del' is absent from the `packages` configuration. 2025-12-08T19:40:00,031 !! 2025-12-08T19:40:00,032 ******************************************************************************** 2025-12-08T19:40:00,032 ############################ 2025-12-08T19:40:00,033 # Package would be ignored # 2025-12-08T19:40:00,033 ############################ 2025-12-08T19:40:00,033 Python recognizes 'rna_tools.tools.clanstix.test_data.rp17_del' as an importable package[^1], 2025-12-08T19:40:00,034 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,035 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,035 package, please make sure that 'rna_tools.tools.clanstix.test_data.rp17_del' is explicitly added 2025-12-08T19:40:00,035 to the `packages` configuration field. 2025-12-08T19:40:00,036 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,036 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,037 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,037 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,038 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,039 If you don't want 'rna_tools.tools.clanstix.test_data.rp17_del' to be distributed and are 2025-12-08T19:40:00,039 already explicitly excluding 'rna_tools.tools.clanstix.test_data.rp17_del' via 2025-12-08T19:40:00,040 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,040 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,040 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,041 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,042 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,043 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,043 even if it does not contain any `.py` files. 2025-12-08T19:40:00,044 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,044 directory, all directories are treated like packages. 2025-12-08T19:40:00,045 ******************************************************************************** 2025-12-08T19:40:00,045 !! 2025-12-08T19:40:00,046 check.warn(importable) 2025-12-08T19:40:00,046 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clarna_app.data' is absent from the `packages` configuration. 2025-12-08T19:40:00,046 !! 2025-12-08T19:40:00,047 ******************************************************************************** 2025-12-08T19:40:00,048 ############################ 2025-12-08T19:40:00,048 # Package would be ignored # 2025-12-08T19:40:00,048 ############################ 2025-12-08T19:40:00,049 Python recognizes 'rna_tools.tools.clarna_app.data' as an importable package[^1], 2025-12-08T19:40:00,049 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,050 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,050 package, please make sure that 'rna_tools.tools.clarna_app.data' is explicitly added 2025-12-08T19:40:00,050 to the `packages` configuration field. 2025-12-08T19:40:00,051 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,052 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,052 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,053 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,053 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,054 If you don't want 'rna_tools.tools.clarna_app.data' to be distributed and are 2025-12-08T19:40:00,054 already explicitly excluding 'rna_tools.tools.clarna_app.data' via 2025-12-08T19:40:00,055 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,056 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,057 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,057 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,058 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,059 even if it does not contain any `.py` files. 2025-12-08T19:40:00,059 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,060 directory, all directories are treated like packages. 2025-12-08T19:40:00,060 ******************************************************************************** 2025-12-08T19:40:00,061 !! 2025-12-08T19:40:00,061 check.warn(importable) 2025-12-08T19:40:00,062 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is absent from the `packages` configuration. 2025-12-08T19:40:00,062 !! 2025-12-08T19:40:00,063 ******************************************************************************** 2025-12-08T19:40:00,063 ############################ 2025-12-08T19:40:00,063 # Package would be ignored # 2025-12-08T19:40:00,064 ############################ 2025-12-08T19:40:00,064 Python recognizes 'rna_tools.tools.clarna_play.ClaRNAlib.lib' as an importable package[^1], 2025-12-08T19:40:00,064 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,065 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,066 package, please make sure that 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is explicitly added 2025-12-08T19:40:00,066 to the `packages` configuration field. 2025-12-08T19:40:00,067 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,067 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,067 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,068 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,069 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,070 If you don't want 'rna_tools.tools.clarna_play.ClaRNAlib.lib' to be distributed and are 2025-12-08T19:40:00,070 already explicitly excluding 'rna_tools.tools.clarna_play.ClaRNAlib.lib' via 2025-12-08T19:40:00,070 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,071 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,071 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,072 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,072 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,074 even if it does not contain any `.py` files. 2025-12-08T19:40:00,074 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,075 directory, all directories are treated like packages. 2025-12-08T19:40:00,075 ******************************************************************************** 2025-12-08T19:40:00,076 !! 2025-12-08T19:40:00,076 check.warn(importable) 2025-12-08T19:40:00,077 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clarna_play.docs' is absent from the `packages` configuration. 2025-12-08T19:40:00,077 !! 2025-12-08T19:40:00,078 ******************************************************************************** 2025-12-08T19:40:00,078 ############################ 2025-12-08T19:40:00,079 # Package would be ignored # 2025-12-08T19:40:00,079 ############################ 2025-12-08T19:40:00,080 Python recognizes 'rna_tools.tools.clarna_play.docs' as an importable package[^1], 2025-12-08T19:40:00,080 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,081 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,081 package, please make sure that 'rna_tools.tools.clarna_play.docs' is explicitly added 2025-12-08T19:40:00,082 to the `packages` configuration field. 2025-12-08T19:40:00,082 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,083 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,083 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,084 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,084 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,085 If you don't want 'rna_tools.tools.clarna_play.docs' to be distributed and are 2025-12-08T19:40:00,086 already explicitly excluding 'rna_tools.tools.clarna_play.docs' via 2025-12-08T19:40:00,086 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,087 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,087 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,088 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,089 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,090 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,090 even if it does not contain any `.py` files. 2025-12-08T19:40:00,091 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,091 directory, all directories are treated like packages. 2025-12-08T19:40:00,091 ******************************************************************************** 2025-12-08T19:40:00,092 !! 2025-12-08T19:40:00,092 check.warn(importable) 2025-12-08T19:40:00,093 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is absent from the `packages` configuration. 2025-12-08T19:40:00,094 !! 2025-12-08T19:40:00,094 ******************************************************************************** 2025-12-08T19:40:00,095 ############################ 2025-12-08T19:40:00,095 # Package would be ignored # 2025-12-08T19:40:00,096 ############################ 2025-12-08T19:40:00,096 Python recognizes 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' as an importable package[^1], 2025-12-08T19:40:00,096 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,097 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,097 package, please make sure that 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is explicitly added 2025-12-08T19:40:00,098 to the `packages` configuration field. 2025-12-08T19:40:00,099 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,099 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,099 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,100 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,101 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,102 If you don't want 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' to be distributed and are 2025-12-08T19:40:00,102 already explicitly excluding 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' via 2025-12-08T19:40:00,102 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,103 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,103 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,104 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,105 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,106 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,106 even if it does not contain any `.py` files. 2025-12-08T19:40:00,107 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,107 directory, all directories are treated like packages. 2025-12-08T19:40:00,107 ******************************************************************************** 2025-12-08T19:40:00,108 !! 2025-12-08T19:40:00,109 check.warn(importable) 2025-12-08T19:40:00,109 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clarna_play.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,110 !! 2025-12-08T19:40:00,110 ******************************************************************************** 2025-12-08T19:40:00,111 ############################ 2025-12-08T19:40:00,111 # Package would be ignored # 2025-12-08T19:40:00,112 ############################ 2025-12-08T19:40:00,112 Python recognizes 'rna_tools.tools.clarna_play.test_data' as an importable package[^1], 2025-12-08T19:40:00,112 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,113 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,113 package, please make sure that 'rna_tools.tools.clarna_play.test_data' is explicitly added 2025-12-08T19:40:00,114 to the `packages` configuration field. 2025-12-08T19:40:00,115 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,115 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,115 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,116 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,117 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,118 If you don't want 'rna_tools.tools.clarna_play.test_data' to be distributed and are 2025-12-08T19:40:00,118 already explicitly excluding 'rna_tools.tools.clarna_play.test_data' via 2025-12-08T19:40:00,119 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,119 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,120 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,121 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,122 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,122 even if it does not contain any `.py` files. 2025-12-08T19:40:00,123 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,123 directory, all directories are treated like packages. 2025-12-08T19:40:00,124 ******************************************************************************** 2025-12-08T19:40:00,124 !! 2025-12-08T19:40:00,125 check.warn(importable) 2025-12-08T19:40:00,125 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clarna_play.test_output' is absent from the `packages` configuration. 2025-12-08T19:40:00,126 !! 2025-12-08T19:40:00,126 ******************************************************************************** 2025-12-08T19:40:00,127 ############################ 2025-12-08T19:40:00,127 # Package would be ignored # 2025-12-08T19:40:00,128 ############################ 2025-12-08T19:40:00,128 Python recognizes 'rna_tools.tools.clarna_play.test_output' as an importable package[^1], 2025-12-08T19:40:00,128 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,129 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,130 package, please make sure that 'rna_tools.tools.clarna_play.test_output' is explicitly added 2025-12-08T19:40:00,130 to the `packages` configuration field. 2025-12-08T19:40:00,131 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,131 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,132 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,132 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,133 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,134 If you don't want 'rna_tools.tools.clarna_play.test_output' to be distributed and are 2025-12-08T19:40:00,134 already explicitly excluding 'rna_tools.tools.clarna_play.test_output' via 2025-12-08T19:40:00,135 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,136 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,136 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,139 even if it does not contain any `.py` files. 2025-12-08T19:40:00,139 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,140 directory, all directories are treated like packages. 2025-12-08T19:40:00,140 ******************************************************************************** 2025-12-08T19:40:00,141 !! 2025-12-08T19:40:00,141 check.warn(importable) 2025-12-08T19:40:00,142 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.clarna_play.tests' is absent from the `packages` configuration. 2025-12-08T19:40:00,142 !! 2025-12-08T19:40:00,143 ******************************************************************************** 2025-12-08T19:40:00,143 ############################ 2025-12-08T19:40:00,144 # Package would be ignored # 2025-12-08T19:40:00,144 ############################ 2025-12-08T19:40:00,145 Python recognizes 'rna_tools.tools.clarna_play.tests' as an importable package[^1], 2025-12-08T19:40:00,145 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,146 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,146 package, please make sure that 'rna_tools.tools.clarna_play.tests' is explicitly added 2025-12-08T19:40:00,147 to the `packages` configuration field. 2025-12-08T19:40:00,147 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,148 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,148 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,149 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,150 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,150 If you don't want 'rna_tools.tools.clarna_play.tests' to be distributed and are 2025-12-08T19:40:00,151 already explicitly excluding 'rna_tools.tools.clarna_play.tests' via 2025-12-08T19:40:00,151 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,152 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,153 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,154 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,155 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,155 even if it does not contain any `.py` files. 2025-12-08T19:40:00,155 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,156 directory, all directories are treated like packages. 2025-12-08T19:40:00,156 ******************************************************************************** 2025-12-08T19:40:00,157 !! 2025-12-08T19:40:00,157 check.warn(importable) 2025-12-08T19:40:00,158 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.df' is absent from the `packages` configuration. 2025-12-08T19:40:00,158 !! 2025-12-08T19:40:00,159 ******************************************************************************** 2025-12-08T19:40:00,159 ############################ 2025-12-08T19:40:00,160 # Package would be ignored # 2025-12-08T19:40:00,160 ############################ 2025-12-08T19:40:00,160 Python recognizes 'rna_tools.tools.df' as an importable package[^1], 2025-12-08T19:40:00,161 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,162 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,162 package, please make sure that 'rna_tools.tools.df' is explicitly added 2025-12-08T19:40:00,162 to the `packages` configuration field. 2025-12-08T19:40:00,163 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,163 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,164 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,165 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,165 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,166 If you don't want 'rna_tools.tools.df' to be distributed and are 2025-12-08T19:40:00,166 already explicitly excluding 'rna_tools.tools.df' via 2025-12-08T19:40:00,167 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,167 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,168 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,169 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,170 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,170 even if it does not contain any `.py` files. 2025-12-08T19:40:00,171 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,171 directory, all directories are treated like packages. 2025-12-08T19:40:00,171 ******************************************************************************** 2025-12-08T19:40:00,172 !! 2025-12-08T19:40:00,173 check.warn(importable) 2025-12-08T19:40:00,173 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.df.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,173 !! 2025-12-08T19:40:00,174 ******************************************************************************** 2025-12-08T19:40:00,174 ############################ 2025-12-08T19:40:00,175 # Package would be ignored # 2025-12-08T19:40:00,175 ############################ 2025-12-08T19:40:00,176 Python recognizes 'rna_tools.tools.df.test_data' as an importable package[^1], 2025-12-08T19:40:00,176 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,177 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,177 package, please make sure that 'rna_tools.tools.df.test_data' is explicitly added 2025-12-08T19:40:00,178 to the `packages` configuration field. 2025-12-08T19:40:00,178 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,179 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,179 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,180 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,181 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,182 If you don't want 'rna_tools.tools.df.test_data' to be distributed and are 2025-12-08T19:40:00,182 already explicitly excluding 'rna_tools.tools.df.test_data' via 2025-12-08T19:40:00,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,183 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,183 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,184 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,185 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,186 even if it does not contain any `.py` files. 2025-12-08T19:40:00,187 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,187 directory, all directories are treated like packages. 2025-12-08T19:40:00,187 ******************************************************************************** 2025-12-08T19:40:00,188 !! 2025-12-08T19:40:00,188 check.warn(importable) 2025-12-08T19:40:00,189 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.diffpdb.doc' is absent from the `packages` configuration. 2025-12-08T19:40:00,189 !! 2025-12-08T19:40:00,190 ******************************************************************************** 2025-12-08T19:40:00,190 ############################ 2025-12-08T19:40:00,191 # Package would be ignored # 2025-12-08T19:40:00,191 ############################ 2025-12-08T19:40:00,191 Python recognizes 'rna_tools.tools.diffpdb.doc' as an importable package[^1], 2025-12-08T19:40:00,192 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,193 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,193 package, please make sure that 'rna_tools.tools.diffpdb.doc' is explicitly added 2025-12-08T19:40:00,193 to the `packages` configuration field. 2025-12-08T19:40:00,194 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,194 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,195 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,196 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,196 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,197 If you don't want 'rna_tools.tools.diffpdb.doc' to be distributed and are 2025-12-08T19:40:00,197 already explicitly excluding 'rna_tools.tools.diffpdb.doc' via 2025-12-08T19:40:00,198 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,198 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,198 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,199 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,201 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,201 even if it does not contain any `.py` files. 2025-12-08T19:40:00,202 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,202 directory, all directories are treated like packages. 2025-12-08T19:40:00,202 ******************************************************************************** 2025-12-08T19:40:00,203 !! 2025-12-08T19:40:00,203 check.warn(importable) 2025-12-08T19:40:00,204 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.diffpdb.lib' is absent from the `packages` configuration. 2025-12-08T19:40:00,204 !! 2025-12-08T19:40:00,205 ******************************************************************************** 2025-12-08T19:40:00,205 ############################ 2025-12-08T19:40:00,206 # Package would be ignored # 2025-12-08T19:40:00,206 ############################ 2025-12-08T19:40:00,206 Python recognizes 'rna_tools.tools.diffpdb.lib' as an importable package[^1], 2025-12-08T19:40:00,207 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,208 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,208 package, please make sure that 'rna_tools.tools.diffpdb.lib' is explicitly added 2025-12-08T19:40:00,208 to the `packages` configuration field. 2025-12-08T19:40:00,209 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,210 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,210 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,211 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,212 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,212 If you don't want 'rna_tools.tools.diffpdb.lib' to be distributed and are 2025-12-08T19:40:00,213 already explicitly excluding 'rna_tools.tools.diffpdb.lib' via 2025-12-08T19:40:00,213 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,213 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,214 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,214 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,215 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,217 even if it does not contain any `.py` files. 2025-12-08T19:40:00,217 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,217 directory, all directories are treated like packages. 2025-12-08T19:40:00,218 ******************************************************************************** 2025-12-08T19:40:00,219 !! 2025-12-08T19:40:00,219 check.warn(importable) 2025-12-08T19:40:00,219 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.diffpdb.output' is absent from the `packages` configuration. 2025-12-08T19:40:00,220 !! 2025-12-08T19:40:00,220 ******************************************************************************** 2025-12-08T19:40:00,221 ############################ 2025-12-08T19:40:00,221 # Package would be ignored # 2025-12-08T19:40:00,221 ############################ 2025-12-08T19:40:00,222 Python recognizes 'rna_tools.tools.diffpdb.output' as an importable package[^1], 2025-12-08T19:40:00,222 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,223 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,223 package, please make sure that 'rna_tools.tools.diffpdb.output' is explicitly added 2025-12-08T19:40:00,224 to the `packages` configuration field. 2025-12-08T19:40:00,224 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,225 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,226 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,227 If you don't want 'rna_tools.tools.diffpdb.output' to be distributed and are 2025-12-08T19:40:00,228 already explicitly excluding 'rna_tools.tools.diffpdb.output' via 2025-12-08T19:40:00,228 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,229 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,229 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,230 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,230 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,231 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,232 even if it does not contain any `.py` files. 2025-12-08T19:40:00,232 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,233 directory, all directories are treated like packages. 2025-12-08T19:40:00,233 ******************************************************************************** 2025-12-08T19:40:00,234 !! 2025-12-08T19:40:00,234 check.warn(importable) 2025-12-08T19:40:00,234 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.diffpdb.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,235 !! 2025-12-08T19:40:00,235 ******************************************************************************** 2025-12-08T19:40:00,236 ############################ 2025-12-08T19:40:00,236 # Package would be ignored # 2025-12-08T19:40:00,237 ############################ 2025-12-08T19:40:00,237 Python recognizes 'rna_tools.tools.diffpdb.test_data' as an importable package[^1], 2025-12-08T19:40:00,237 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,238 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,238 package, please make sure that 'rna_tools.tools.diffpdb.test_data' is explicitly added 2025-12-08T19:40:00,239 to the `packages` configuration field. 2025-12-08T19:40:00,240 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,240 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,240 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,241 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,242 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,243 If you don't want 'rna_tools.tools.diffpdb.test_data' to be distributed and are 2025-12-08T19:40:00,243 already explicitly excluding 'rna_tools.tools.diffpdb.test_data' via 2025-12-08T19:40:00,244 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,244 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,245 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,245 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,246 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,247 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,248 even if it does not contain any `.py` files. 2025-12-08T19:40:00,248 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,248 directory, all directories are treated like packages. 2025-12-08T19:40:00,249 ******************************************************************************** 2025-12-08T19:40:00,250 !! 2025-12-08T19:40:00,250 check.warn(importable) 2025-12-08T19:40:00,250 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.md.data' is absent from the `packages` configuration. 2025-12-08T19:40:00,251 !! 2025-12-08T19:40:00,251 ******************************************************************************** 2025-12-08T19:40:00,252 ############################ 2025-12-08T19:40:00,252 # Package would be ignored # 2025-12-08T19:40:00,252 ############################ 2025-12-08T19:40:00,253 Python recognizes 'rna_tools.tools.md.data' as an importable package[^1], 2025-12-08T19:40:00,253 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,254 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,254 package, please make sure that 'rna_tools.tools.md.data' is explicitly added 2025-12-08T19:40:00,255 to the `packages` configuration field. 2025-12-08T19:40:00,255 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,256 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,256 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,257 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,258 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,258 If you don't want 'rna_tools.tools.md.data' to be distributed and are 2025-12-08T19:40:00,259 already explicitly excluding 'rna_tools.tools.md.data' via 2025-12-08T19:40:00,259 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,259 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,260 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,260 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,261 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,262 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,263 even if it does not contain any `.py` files. 2025-12-08T19:40:00,263 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,263 directory, all directories are treated like packages. 2025-12-08T19:40:00,264 ******************************************************************************** 2025-12-08T19:40:00,264 !! 2025-12-08T19:40:00,265 check.warn(importable) 2025-12-08T19:40:00,265 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.md.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,265 !! 2025-12-08T19:40:00,266 ******************************************************************************** 2025-12-08T19:40:00,267 ############################ 2025-12-08T19:40:00,267 # Package would be ignored # 2025-12-08T19:40:00,267 ############################ 2025-12-08T19:40:00,268 Python recognizes 'rna_tools.tools.md.test_data' as an importable package[^1], 2025-12-08T19:40:00,268 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,269 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,269 package, please make sure that 'rna_tools.tools.md.test_data' is explicitly added 2025-12-08T19:40:00,270 to the `packages` configuration field. 2025-12-08T19:40:00,271 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,271 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,271 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,272 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,273 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,274 If you don't want 'rna_tools.tools.md.test_data' to be distributed and are 2025-12-08T19:40:00,274 already explicitly excluding 'rna_tools.tools.md.test_data' via 2025-12-08T19:40:00,274 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,275 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,275 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,276 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,277 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,278 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,278 even if it does not contain any `.py` files. 2025-12-08T19:40:00,278 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,279 directory, all directories are treated like packages. 2025-12-08T19:40:00,279 ******************************************************************************** 2025-12-08T19:40:00,280 !! 2025-12-08T19:40:00,280 check.warn(importable) 2025-12-08T19:40:00,280 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.md.test_output' is absent from the `packages` configuration. 2025-12-08T19:40:00,281 !! 2025-12-08T19:40:00,282 ******************************************************************************** 2025-12-08T19:40:00,282 ############################ 2025-12-08T19:40:00,282 # Package would be ignored # 2025-12-08T19:40:00,283 ############################ 2025-12-08T19:40:00,283 Python recognizes 'rna_tools.tools.md.test_output' as an importable package[^1], 2025-12-08T19:40:00,283 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,284 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,284 package, please make sure that 'rna_tools.tools.md.test_output' is explicitly added 2025-12-08T19:40:00,285 to the `packages` configuration field. 2025-12-08T19:40:00,286 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,286 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,286 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,287 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,288 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,289 If you don't want 'rna_tools.tools.md.test_output' to be distributed and are 2025-12-08T19:40:00,289 already explicitly excluding 'rna_tools.tools.md.test_output' via 2025-12-08T19:40:00,289 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,290 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,290 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,291 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,291 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,293 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,293 even if it does not contain any `.py` files. 2025-12-08T19:40:00,293 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,294 directory, all directories are treated like packages. 2025-12-08T19:40:00,294 ******************************************************************************** 2025-12-08T19:40:00,295 !! 2025-12-08T19:40:00,295 check.warn(importable) 2025-12-08T19:40:00,296 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is absent from the `packages` configuration. 2025-12-08T19:40:00,296 !! 2025-12-08T19:40:00,297 ******************************************************************************** 2025-12-08T19:40:00,297 ############################ 2025-12-08T19:40:00,298 # Package would be ignored # 2025-12-08T19:40:00,298 ############################ 2025-12-08T19:40:00,298 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' as an importable package[^1], 2025-12-08T19:40:00,299 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,300 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,300 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is explicitly added 2025-12-08T19:40:00,300 to the `packages` configuration field. 2025-12-08T19:40:00,301 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,301 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,302 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,303 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,303 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,304 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' to be distributed and are 2025-12-08T19:40:00,304 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' via 2025-12-08T19:40:00,305 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,305 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,305 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,306 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,307 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,308 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,308 even if it does not contain any `.py` files. 2025-12-08T19:40:00,309 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,309 directory, all directories are treated like packages. 2025-12-08T19:40:00,309 ******************************************************************************** 2025-12-08T19:40:00,310 !! 2025-12-08T19:40:00,311 check.warn(importable) 2025-12-08T19:40:00,311 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,311 !! 2025-12-08T19:40:00,312 ******************************************************************************** 2025-12-08T19:40:00,312 ############################ 2025-12-08T19:40:00,313 # Package would be ignored # 2025-12-08T19:40:00,313 ############################ 2025-12-08T19:40:00,313 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' as an importable package[^1], 2025-12-08T19:40:00,314 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,315 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,315 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is explicitly added 2025-12-08T19:40:00,315 to the `packages` configuration field. 2025-12-08T19:40:00,316 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,316 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,317 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,317 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,318 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,319 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' to be distributed and are 2025-12-08T19:40:00,319 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' via 2025-12-08T19:40:00,320 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,320 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,320 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,321 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,322 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,323 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,323 even if it does not contain any `.py` files. 2025-12-08T19:40:00,324 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,324 directory, all directories are treated like packages. 2025-12-08T19:40:00,324 ******************************************************************************** 2025-12-08T19:40:00,325 !! 2025-12-08T19:40:00,326 check.warn(importable) 2025-12-08T19:40:00,326 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data' is absent from the `packages` configuration. 2025-12-08T19:40:00,326 !! 2025-12-08T19:40:00,327 ******************************************************************************** 2025-12-08T19:40:00,328 ############################ 2025-12-08T19:40:00,328 # Package would be ignored # 2025-12-08T19:40:00,328 ############################ 2025-12-08T19:40:00,329 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data' as an importable package[^1], 2025-12-08T19:40:00,329 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,330 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,330 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data' is explicitly added 2025-12-08T19:40:00,331 to the `packages` configuration field. 2025-12-08T19:40:00,331 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,332 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,332 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,333 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,333 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,334 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data' to be distributed and are 2025-12-08T19:40:00,335 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data' via 2025-12-08T19:40:00,335 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,335 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,336 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,336 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,337 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,338 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,339 even if it does not contain any `.py` files. 2025-12-08T19:40:00,339 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,339 directory, all directories are treated like packages. 2025-12-08T19:40:00,340 ******************************************************************************** 2025-12-08T19:40:00,340 !! 2025-12-08T19:40:00,341 check.warn(importable) 2025-12-08T19:40:00,341 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is absent from the `packages` configuration. 2025-12-08T19:40:00,342 !! 2025-12-08T19:40:00,342 ******************************************************************************** 2025-12-08T19:40:00,343 ############################ 2025-12-08T19:40:00,343 # Package would be ignored # 2025-12-08T19:40:00,344 ############################ 2025-12-08T19:40:00,344 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' as an importable package[^1], 2025-12-08T19:40:00,344 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,345 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,345 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is explicitly added 2025-12-08T19:40:00,346 to the `packages` configuration field. 2025-12-08T19:40:00,346 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,347 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,347 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,348 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,349 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,349 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' to be distributed and are 2025-12-08T19:40:00,350 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' via 2025-12-08T19:40:00,350 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,351 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,352 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,352 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,354 even if it does not contain any `.py` files. 2025-12-08T19:40:00,354 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,355 directory, all directories are treated like packages. 2025-12-08T19:40:00,355 ******************************************************************************** 2025-12-08T19:40:00,356 !! 2025-12-08T19:40:00,356 check.warn(importable) 2025-12-08T19:40:00,357 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is absent from the `packages` configuration. 2025-12-08T19:40:00,357 !! 2025-12-08T19:40:00,358 ******************************************************************************** 2025-12-08T19:40:00,358 ############################ 2025-12-08T19:40:00,359 # Package would be ignored # 2025-12-08T19:40:00,359 ############################ 2025-12-08T19:40:00,359 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' as an importable package[^1], 2025-12-08T19:40:00,360 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,360 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,361 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is explicitly added 2025-12-08T19:40:00,361 to the `packages` configuration field. 2025-12-08T19:40:00,362 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,362 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,362 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,363 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,364 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,365 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' to be distributed and are 2025-12-08T19:40:00,365 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' via 2025-12-08T19:40:00,365 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,366 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,366 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,367 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,368 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,369 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,369 even if it does not contain any `.py` files. 2025-12-08T19:40:00,369 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,370 directory, all directories are treated like packages. 2025-12-08T19:40:00,370 ******************************************************************************** 2025-12-08T19:40:00,371 !! 2025-12-08T19:40:00,371 check.warn(importable) 2025-12-08T19:40:00,372 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is absent from the `packages` configuration. 2025-12-08T19:40:00,372 !! 2025-12-08T19:40:00,373 ******************************************************************************** 2025-12-08T19:40:00,373 ############################ 2025-12-08T19:40:00,373 # Package would be ignored # 2025-12-08T19:40:00,374 ############################ 2025-12-08T19:40:00,374 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' as an importable package[^1], 2025-12-08T19:40:00,374 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,375 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,376 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is explicitly added 2025-12-08T19:40:00,376 to the `packages` configuration field. 2025-12-08T19:40:00,377 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,377 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,378 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,380 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' to be distributed and are 2025-12-08T19:40:00,380 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' via 2025-12-08T19:40:00,380 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,381 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,381 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,382 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,383 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,384 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,384 even if it does not contain any `.py` files. 2025-12-08T19:40:00,385 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,385 directory, all directories are treated like packages. 2025-12-08T19:40:00,385 ******************************************************************************** 2025-12-08T19:40:00,386 !! 2025-12-08T19:40:00,387 check.warn(importable) 2025-12-08T19:40:00,387 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is absent from the `packages` configuration. 2025-12-08T19:40:00,387 !! 2025-12-08T19:40:00,388 ******************************************************************************** 2025-12-08T19:40:00,388 ############################ 2025-12-08T19:40:00,389 # Package would be ignored # 2025-12-08T19:40:00,389 ############################ 2025-12-08T19:40:00,389 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' as an importable package[^1], 2025-12-08T19:40:00,390 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,391 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,391 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is explicitly added 2025-12-08T19:40:00,391 to the `packages` configuration field. 2025-12-08T19:40:00,392 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,393 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,394 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,394 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,395 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' to be distributed and are 2025-12-08T19:40:00,396 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' via 2025-12-08T19:40:00,396 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,396 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,397 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,397 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,398 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,399 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,400 even if it does not contain any `.py` files. 2025-12-08T19:40:00,400 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,400 directory, all directories are treated like packages. 2025-12-08T19:40:00,401 ******************************************************************************** 2025-12-08T19:40:00,401 !! 2025-12-08T19:40:00,402 check.warn(importable) 2025-12-08T19:40:00,402 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mq.FARFAR2.test_output' is absent from the `packages` configuration. 2025-12-08T19:40:00,402 !! 2025-12-08T19:40:00,403 ******************************************************************************** 2025-12-08T19:40:00,403 ############################ 2025-12-08T19:40:00,404 # Package would be ignored # 2025-12-08T19:40:00,404 ############################ 2025-12-08T19:40:00,405 Python recognizes 'rna_tools.tools.mq.FARFAR2.test_output' as an importable package[^1], 2025-12-08T19:40:00,405 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,406 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,406 package, please make sure that 'rna_tools.tools.mq.FARFAR2.test_output' is explicitly added 2025-12-08T19:40:00,406 to the `packages` configuration field. 2025-12-08T19:40:00,407 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,407 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,408 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,409 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,409 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,410 If you don't want 'rna_tools.tools.mq.FARFAR2.test_output' to be distributed and are 2025-12-08T19:40:00,411 already explicitly excluding 'rna_tools.tools.mq.FARFAR2.test_output' via 2025-12-08T19:40:00,411 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,411 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,412 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,413 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,413 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,414 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,415 even if it does not contain any `.py` files. 2025-12-08T19:40:00,415 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,416 directory, all directories are treated like packages. 2025-12-08T19:40:00,416 ******************************************************************************** 2025-12-08T19:40:00,417 !! 2025-12-08T19:40:00,417 check.warn(importable) 2025-12-08T19:40:00,417 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mq.FARNA.test_output' is absent from the `packages` configuration. 2025-12-08T19:40:00,418 !! 2025-12-08T19:40:00,418 ******************************************************************************** 2025-12-08T19:40:00,419 ############################ 2025-12-08T19:40:00,419 # Package would be ignored # 2025-12-08T19:40:00,420 ############################ 2025-12-08T19:40:00,420 Python recognizes 'rna_tools.tools.mq.FARNA.test_output' as an importable package[^1], 2025-12-08T19:40:00,420 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,421 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,421 package, please make sure that 'rna_tools.tools.mq.FARNA.test_output' is explicitly added 2025-12-08T19:40:00,422 to the `packages` configuration field. 2025-12-08T19:40:00,422 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,423 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,424 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,425 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,425 If you don't want 'rna_tools.tools.mq.FARNA.test_output' to be distributed and are 2025-12-08T19:40:00,426 already explicitly excluding 'rna_tools.tools.mq.FARNA.test_output' via 2025-12-08T19:40:00,426 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,426 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,427 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,427 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,428 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,429 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,430 even if it does not contain any `.py` files. 2025-12-08T19:40:00,430 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,430 directory, all directories are treated like packages. 2025-12-08T19:40:00,431 ******************************************************************************** 2025-12-08T19:40:00,431 !! 2025-12-08T19:40:00,432 check.warn(importable) 2025-12-08T19:40:00,432 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mq.RNAkb.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,432 !! 2025-12-08T19:40:00,433 ******************************************************************************** 2025-12-08T19:40:00,434 ############################ 2025-12-08T19:40:00,434 # Package would be ignored # 2025-12-08T19:40:00,434 ############################ 2025-12-08T19:40:00,435 Python recognizes 'rna_tools.tools.mq.RNAkb.test_data' as an importable package[^1], 2025-12-08T19:40:00,435 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,436 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,436 package, please make sure that 'rna_tools.tools.mq.RNAkb.test_data' is explicitly added 2025-12-08T19:40:00,436 to the `packages` configuration field. 2025-12-08T19:40:00,437 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,438 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,438 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,439 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,440 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,440 If you don't want 'rna_tools.tools.mq.RNAkb.test_data' to be distributed and are 2025-12-08T19:40:00,441 already explicitly excluding 'rna_tools.tools.mq.RNAkb.test_data' via 2025-12-08T19:40:00,441 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,442 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,442 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,443 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,444 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,445 even if it does not contain any `.py` files. 2025-12-08T19:40:00,446 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,446 directory, all directories are treated like packages. 2025-12-08T19:40:00,446 ******************************************************************************** 2025-12-08T19:40:00,447 !! 2025-12-08T19:40:00,447 check.warn(importable) 2025-12-08T19:40:00,448 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mq.SimRNA.test' is absent from the `packages` configuration. 2025-12-08T19:40:00,448 !! 2025-12-08T19:40:00,449 ******************************************************************************** 2025-12-08T19:40:00,449 ############################ 2025-12-08T19:40:00,450 # Package would be ignored # 2025-12-08T19:40:00,450 ############################ 2025-12-08T19:40:00,450 Python recognizes 'rna_tools.tools.mq.SimRNA.test' as an importable package[^1], 2025-12-08T19:40:00,451 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,451 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,452 package, please make sure that 'rna_tools.tools.mq.SimRNA.test' is explicitly added 2025-12-08T19:40:00,452 to the `packages` configuration field. 2025-12-08T19:40:00,453 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,453 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,454 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,454 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,456 If you don't want 'rna_tools.tools.mq.SimRNA.test' to be distributed and are 2025-12-08T19:40:00,456 already explicitly excluding 'rna_tools.tools.mq.SimRNA.test' via 2025-12-08T19:40:00,456 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,457 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,458 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,459 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,460 even if it does not contain any `.py` files. 2025-12-08T19:40:00,460 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,461 directory, all directories are treated like packages. 2025-12-08T19:40:00,461 ******************************************************************************** 2025-12-08T19:40:00,462 !! 2025-12-08T19:40:00,462 check.warn(importable) 2025-12-08T19:40:00,463 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mq.eSCORE.test' is absent from the `packages` configuration. 2025-12-08T19:40:00,463 !! 2025-12-08T19:40:00,464 ******************************************************************************** 2025-12-08T19:40:00,464 ############################ 2025-12-08T19:40:00,464 # Package would be ignored # 2025-12-08T19:40:00,465 ############################ 2025-12-08T19:40:00,465 Python recognizes 'rna_tools.tools.mq.eSCORE.test' as an importable package[^1], 2025-12-08T19:40:00,465 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,466 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,467 package, please make sure that 'rna_tools.tools.mq.eSCORE.test' is explicitly added 2025-12-08T19:40:00,467 to the `packages` configuration field. 2025-12-08T19:40:00,468 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,469 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,469 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,470 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,471 If you don't want 'rna_tools.tools.mq.eSCORE.test' to be distributed and are 2025-12-08T19:40:00,471 already explicitly excluding 'rna_tools.tools.mq.eSCORE.test' via 2025-12-08T19:40:00,472 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,472 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,473 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,473 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,474 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,475 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,476 even if it does not contain any `.py` files. 2025-12-08T19:40:00,476 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,476 directory, all directories are treated like packages. 2025-12-08T19:40:00,477 ******************************************************************************** 2025-12-08T19:40:00,477 !! 2025-12-08T19:40:00,478 check.warn(importable) 2025-12-08T19:40:00,478 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mq.test' is absent from the `packages` configuration. 2025-12-08T19:40:00,478 !! 2025-12-08T19:40:00,479 ******************************************************************************** 2025-12-08T19:40:00,480 ############################ 2025-12-08T19:40:00,480 # Package would be ignored # 2025-12-08T19:40:00,480 ############################ 2025-12-08T19:40:00,481 Python recognizes 'rna_tools.tools.mq.test' as an importable package[^1], 2025-12-08T19:40:00,481 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,482 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,482 package, please make sure that 'rna_tools.tools.mq.test' is explicitly added 2025-12-08T19:40:00,483 to the `packages` configuration field. 2025-12-08T19:40:00,483 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,484 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,485 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,485 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,486 If you don't want 'rna_tools.tools.mq.test' to be distributed and are 2025-12-08T19:40:00,487 already explicitly excluding 'rna_tools.tools.mq.test' via 2025-12-08T19:40:00,487 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,487 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,488 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,488 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,489 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,490 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,490 even if it does not contain any `.py` files. 2025-12-08T19:40:00,491 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,491 directory, all directories are treated like packages. 2025-12-08T19:40:00,492 ******************************************************************************** 2025-12-08T19:40:00,492 !! 2025-12-08T19:40:00,493 check.warn(importable) 2025-12-08T19:40:00,493 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.mq.tmp' is absent from the `packages` configuration. 2025-12-08T19:40:00,494 !! 2025-12-08T19:40:00,494 ******************************************************************************** 2025-12-08T19:40:00,495 ############################ 2025-12-08T19:40:00,495 # Package would be ignored # 2025-12-08T19:40:00,495 ############################ 2025-12-08T19:40:00,496 Python recognizes 'rna_tools.tools.mq.tmp' as an importable package[^1], 2025-12-08T19:40:00,496 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,497 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,497 package, please make sure that 'rna_tools.tools.mq.tmp' is explicitly added 2025-12-08T19:40:00,498 to the `packages` configuration field. 2025-12-08T19:40:00,499 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,499 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,500 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,501 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,502 If you don't want 'rna_tools.tools.mq.tmp' to be distributed and are 2025-12-08T19:40:00,502 already explicitly excluding 'rna_tools.tools.mq.tmp' via 2025-12-08T19:40:00,502 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,503 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,503 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,504 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,505 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,506 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,506 even if it does not contain any `.py` files. 2025-12-08T19:40:00,506 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,507 directory, all directories are treated like packages. 2025-12-08T19:40:00,507 ******************************************************************************** 2025-12-08T19:40:00,508 !! 2025-12-08T19:40:00,508 check.warn(importable) 2025-12-08T19:40:00,509 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,509 !! 2025-12-08T19:40:00,510 ******************************************************************************** 2025-12-08T19:40:00,510 ############################ 2025-12-08T19:40:00,510 # Package would be ignored # 2025-12-08T19:40:00,511 ############################ 2025-12-08T19:40:00,511 Python recognizes 'rna_tools.tools.pdbs_measure_atom_dists.test_data' as an importable package[^1], 2025-12-08T19:40:00,511 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,512 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,513 package, please make sure that 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is explicitly added 2025-12-08T19:40:00,513 to the `packages` configuration field. 2025-12-08T19:40:00,514 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,514 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,514 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,515 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,516 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,517 If you don't want 'rna_tools.tools.pdbs_measure_atom_dists.test_data' to be distributed and are 2025-12-08T19:40:00,517 already explicitly excluding 'rna_tools.tools.pdbs_measure_atom_dists.test_data' via 2025-12-08T19:40:00,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,518 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,519 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,519 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,521 even if it does not contain any `.py` files. 2025-12-08T19:40:00,521 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,522 directory, all directories are treated like packages. 2025-12-08T19:40:00,522 ******************************************************************************** 2025-12-08T19:40:00,523 !! 2025-12-08T19:40:00,523 check.warn(importable) 2025-12-08T19:40:00,523 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.plotting.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,524 !! 2025-12-08T19:40:00,525 ******************************************************************************** 2025-12-08T19:40:00,525 ############################ 2025-12-08T19:40:00,525 # Package would be ignored # 2025-12-08T19:40:00,526 ############################ 2025-12-08T19:40:00,526 Python recognizes 'rna_tools.tools.plotting.test_data' as an importable package[^1], 2025-12-08T19:40:00,526 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,527 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,528 package, please make sure that 'rna_tools.tools.plotting.test_data' is explicitly added 2025-12-08T19:40:00,528 to the `packages` configuration field. 2025-12-08T19:40:00,529 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,529 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,530 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,530 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,531 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,532 If you don't want 'rna_tools.tools.plotting.test_data' to be distributed and are 2025-12-08T19:40:00,532 already explicitly excluding 'rna_tools.tools.plotting.test_data' via 2025-12-08T19:40:00,533 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,533 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,533 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,534 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,535 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,536 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,536 even if it does not contain any `.py` files. 2025-12-08T19:40:00,537 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,537 directory, all directories are treated like packages. 2025-12-08T19:40:00,537 ******************************************************************************** 2025-12-08T19:40:00,538 !! 2025-12-08T19:40:00,538 check.warn(importable) 2025-12-08T19:40:00,539 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.proteins' is absent from the `packages` configuration. 2025-12-08T19:40:00,539 !! 2025-12-08T19:40:00,540 ******************************************************************************** 2025-12-08T19:40:00,540 ############################ 2025-12-08T19:40:00,541 # Package would be ignored # 2025-12-08T19:40:00,541 ############################ 2025-12-08T19:40:00,541 Python recognizes 'rna_tools.tools.proteins' as an importable package[^1], 2025-12-08T19:40:00,542 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,542 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,543 package, please make sure that 'rna_tools.tools.proteins' is explicitly added 2025-12-08T19:40:00,543 to the `packages` configuration field. 2025-12-08T19:40:00,544 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,544 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,545 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,546 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,547 If you don't want 'rna_tools.tools.proteins' to be distributed and are 2025-12-08T19:40:00,547 already explicitly excluding 'rna_tools.tools.proteins' via 2025-12-08T19:40:00,548 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,548 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,549 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,549 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,550 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,551 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,551 even if it does not contain any `.py` files. 2025-12-08T19:40:00,552 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,552 directory, all directories are treated like packages. 2025-12-08T19:40:00,553 ******************************************************************************** 2025-12-08T19:40:00,553 !! 2025-12-08T19:40:00,554 check.warn(importable) 2025-12-08T19:40:00,554 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv' is absent from the `packages` configuration. 2025-12-08T19:40:00,554 !! 2025-12-08T19:40:00,555 ******************************************************************************** 2025-12-08T19:40:00,555 ############################ 2025-12-08T19:40:00,556 # Package would be ignored # 2025-12-08T19:40:00,556 ############################ 2025-12-08T19:40:00,557 Python recognizes 'rna_tools.tools.pymol_color_by_conserv' as an importable package[^1], 2025-12-08T19:40:00,557 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,558 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,558 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv' is explicitly added 2025-12-08T19:40:00,559 to the `packages` configuration field. 2025-12-08T19:40:00,559 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,560 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,561 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,563 If you don't want 'rna_tools.tools.pymol_color_by_conserv' to be distributed and are 2025-12-08T19:40:00,563 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv' via 2025-12-08T19:40:00,563 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,564 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,565 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,566 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,567 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,567 even if it does not contain any `.py` files. 2025-12-08T19:40:00,567 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,568 directory, all directories are treated like packages. 2025-12-08T19:40:00,568 ******************************************************************************** 2025-12-08T19:40:00,569 !! 2025-12-08T19:40:00,569 check.warn(importable) 2025-12-08T19:40:00,570 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is absent from the `packages` configuration. 2025-12-08T19:40:00,570 !! 2025-12-08T19:40:00,571 ******************************************************************************** 2025-12-08T19:40:00,571 ############################ 2025-12-08T19:40:00,571 # Package would be ignored # 2025-12-08T19:40:00,572 ############################ 2025-12-08T19:40:00,572 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' as an importable package[^1], 2025-12-08T19:40:00,572 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,573 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,574 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is explicitly added 2025-12-08T19:40:00,574 to the `packages` configuration field. 2025-12-08T19:40:00,575 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,575 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,575 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,576 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,577 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,578 If you don't want 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' to be distributed and are 2025-12-08T19:40:00,578 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' via 2025-12-08T19:40:00,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,579 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,579 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,580 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,580 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,582 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,582 even if it does not contain any `.py` files. 2025-12-08T19:40:00,582 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,583 directory, all directories are treated like packages. 2025-12-08T19:40:00,583 ******************************************************************************** 2025-12-08T19:40:00,584 !! 2025-12-08T19:40:00,584 check.warn(importable) 2025-12-08T19:40:00,584 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.docs' is absent from the `packages` configuration. 2025-12-08T19:40:00,585 !! 2025-12-08T19:40:00,586 ******************************************************************************** 2025-12-08T19:40:00,586 ############################ 2025-12-08T19:40:00,586 # Package would be ignored # 2025-12-08T19:40:00,587 ############################ 2025-12-08T19:40:00,587 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.docs' as an importable package[^1], 2025-12-08T19:40:00,588 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,588 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,589 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.docs' is explicitly added 2025-12-08T19:40:00,589 to the `packages` configuration field. 2025-12-08T19:40:00,590 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,590 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,591 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,591 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,592 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,593 If you don't want 'rna_tools.tools.pymol_color_by_conserv.docs' to be distributed and are 2025-12-08T19:40:00,593 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.docs' via 2025-12-08T19:40:00,594 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,594 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,594 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,595 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,596 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,597 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,597 even if it does not contain any `.py` files. 2025-12-08T19:40:00,598 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,598 directory, all directories are treated like packages. 2025-12-08T19:40:00,598 ******************************************************************************** 2025-12-08T19:40:00,599 !! 2025-12-08T19:40:00,599 check.warn(importable) 2025-12-08T19:40:00,600 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_drawing.docs' is absent from the `packages` configuration. 2025-12-08T19:40:00,600 !! 2025-12-08T19:40:00,601 ******************************************************************************** 2025-12-08T19:40:00,601 ############################ 2025-12-08T19:40:00,602 # Package would be ignored # 2025-12-08T19:40:00,602 ############################ 2025-12-08T19:40:00,602 Python recognizes 'rna_tools.tools.pymol_drawing.docs' as an importable package[^1], 2025-12-08T19:40:00,603 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,603 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,604 package, please make sure that 'rna_tools.tools.pymol_drawing.docs' is explicitly added 2025-12-08T19:40:00,604 to the `packages` configuration field. 2025-12-08T19:40:00,605 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,605 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,606 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,606 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,607 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,608 If you don't want 'rna_tools.tools.pymol_drawing.docs' to be distributed and are 2025-12-08T19:40:00,608 already explicitly excluding 'rna_tools.tools.pymol_drawing.docs' via 2025-12-08T19:40:00,609 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,609 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,609 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,610 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,611 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,612 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,612 even if it does not contain any `.py` files. 2025-12-08T19:40:00,613 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,613 directory, all directories are treated like packages. 2025-12-08T19:40:00,613 ******************************************************************************** 2025-12-08T19:40:00,614 !! 2025-12-08T19:40:00,615 check.warn(importable) 2025-12-08T19:40:00,615 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_drawing.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,615 !! 2025-12-08T19:40:00,616 ******************************************************************************** 2025-12-08T19:40:00,617 ############################ 2025-12-08T19:40:00,617 # Package would be ignored # 2025-12-08T19:40:00,617 ############################ 2025-12-08T19:40:00,618 Python recognizes 'rna_tools.tools.pymol_drawing.test_data' as an importable package[^1], 2025-12-08T19:40:00,618 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,619 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,619 package, please make sure that 'rna_tools.tools.pymol_drawing.test_data' is explicitly added 2025-12-08T19:40:00,620 to the `packages` configuration field. 2025-12-08T19:40:00,620 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,621 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,621 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,622 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,623 If you don't want 'rna_tools.tools.pymol_drawing.test_data' to be distributed and are 2025-12-08T19:40:00,623 already explicitly excluding 'rna_tools.tools.pymol_drawing.test_data' via 2025-12-08T19:40:00,624 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,624 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,625 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,625 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,626 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,627 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,628 even if it does not contain any `.py` files. 2025-12-08T19:40:00,628 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,628 directory, all directories are treated like packages. 2025-12-08T19:40:00,629 ******************************************************************************** 2025-12-08T19:40:00,629 !! 2025-12-08T19:40:00,630 check.warn(importable) 2025-12-08T19:40:00,630 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_preview_generator' is absent from the `packages` configuration. 2025-12-08T19:40:00,630 !! 2025-12-08T19:40:00,631 ******************************************************************************** 2025-12-08T19:40:00,632 ############################ 2025-12-08T19:40:00,632 # Package would be ignored # 2025-12-08T19:40:00,632 ############################ 2025-12-08T19:40:00,633 Python recognizes 'rna_tools.tools.pymol_preview_generator' as an importable package[^1], 2025-12-08T19:40:00,633 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,634 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,634 package, please make sure that 'rna_tools.tools.pymol_preview_generator' is explicitly added 2025-12-08T19:40:00,634 to the `packages` configuration field. 2025-12-08T19:40:00,635 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,636 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,636 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,637 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,637 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,638 If you don't want 'rna_tools.tools.pymol_preview_generator' to be distributed and are 2025-12-08T19:40:00,638 already explicitly excluding 'rna_tools.tools.pymol_preview_generator' via 2025-12-08T19:40:00,639 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,639 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,640 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,640 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,641 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,642 even if it does not contain any `.py` files. 2025-12-08T19:40:00,643 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,643 directory, all directories are treated like packages. 2025-12-08T19:40:00,644 ******************************************************************************** 2025-12-08T19:40:00,645 !! 2025-12-08T19:40:00,645 check.warn(importable) 2025-12-08T19:40:00,646 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_preview_generator.bash' is absent from the `packages` configuration. 2025-12-08T19:40:00,646 !! 2025-12-08T19:40:00,647 ******************************************************************************** 2025-12-08T19:40:00,647 ############################ 2025-12-08T19:40:00,648 # Package would be ignored # 2025-12-08T19:40:00,648 ############################ 2025-12-08T19:40:00,648 Python recognizes 'rna_tools.tools.pymol_preview_generator.bash' as an importable package[^1], 2025-12-08T19:40:00,649 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,649 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,650 package, please make sure that 'rna_tools.tools.pymol_preview_generator.bash' is explicitly added 2025-12-08T19:40:00,650 to the `packages` configuration field. 2025-12-08T19:40:00,651 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,651 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,652 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,652 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,653 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,654 If you don't want 'rna_tools.tools.pymol_preview_generator.bash' to be distributed and are 2025-12-08T19:40:00,654 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.bash' via 2025-12-08T19:40:00,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,655 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,656 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,658 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,658 even if it does not contain any `.py` files. 2025-12-08T19:40:00,659 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,659 directory, all directories are treated like packages. 2025-12-08T19:40:00,659 ******************************************************************************** 2025-12-08T19:40:00,660 !! 2025-12-08T19:40:00,660 check.warn(importable) 2025-12-08T19:40:00,661 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_preview_generator.docs' is absent from the `packages` configuration. 2025-12-08T19:40:00,661 !! 2025-12-08T19:40:00,662 ******************************************************************************** 2025-12-08T19:40:00,662 ############################ 2025-12-08T19:40:00,663 # Package would be ignored # 2025-12-08T19:40:00,663 ############################ 2025-12-08T19:40:00,663 Python recognizes 'rna_tools.tools.pymol_preview_generator.docs' as an importable package[^1], 2025-12-08T19:40:00,664 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,664 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,665 package, please make sure that 'rna_tools.tools.pymol_preview_generator.docs' is explicitly added 2025-12-08T19:40:00,665 to the `packages` configuration field. 2025-12-08T19:40:00,666 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,666 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,667 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,667 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,668 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,669 If you don't want 'rna_tools.tools.pymol_preview_generator.docs' to be distributed and are 2025-12-08T19:40:00,669 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.docs' via 2025-12-08T19:40:00,669 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,670 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,670 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,671 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,672 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,673 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,673 even if it does not contain any `.py` files. 2025-12-08T19:40:00,674 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,674 directory, all directories are treated like packages. 2025-12-08T19:40:00,675 ******************************************************************************** 2025-12-08T19:40:00,675 !! 2025-12-08T19:40:00,676 check.warn(importable) 2025-12-08T19:40:00,676 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.pymol_preview_generator.zsh' is absent from the `packages` configuration. 2025-12-08T19:40:00,677 !! 2025-12-08T19:40:00,677 ******************************************************************************** 2025-12-08T19:40:00,678 ############################ 2025-12-08T19:40:00,678 # Package would be ignored # 2025-12-08T19:40:00,679 ############################ 2025-12-08T19:40:00,679 Python recognizes 'rna_tools.tools.pymol_preview_generator.zsh' as an importable package[^1], 2025-12-08T19:40:00,679 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,680 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,680 package, please make sure that 'rna_tools.tools.pymol_preview_generator.zsh' is explicitly added 2025-12-08T19:40:00,681 to the `packages` configuration field. 2025-12-08T19:40:00,681 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,682 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,683 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,684 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,684 If you don't want 'rna_tools.tools.pymol_preview_generator.zsh' to be distributed and are 2025-12-08T19:40:00,685 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.zsh' via 2025-12-08T19:40:00,685 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,685 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,686 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,687 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,687 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,688 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,689 even if it does not contain any `.py` files. 2025-12-08T19:40:00,689 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,689 directory, all directories are treated like packages. 2025-12-08T19:40:00,690 ******************************************************************************** 2025-12-08T19:40:00,690 !! 2025-12-08T19:40:00,691 check.warn(importable) 2025-12-08T19:40:00,691 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.renum_pdb_to_aln.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,692 !! 2025-12-08T19:40:00,692 ******************************************************************************** 2025-12-08T19:40:00,693 ############################ 2025-12-08T19:40:00,693 # Package would be ignored # 2025-12-08T19:40:00,694 ############################ 2025-12-08T19:40:00,694 Python recognizes 'rna_tools.tools.renum_pdb_to_aln.test_data' as an importable package[^1], 2025-12-08T19:40:00,694 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,695 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,695 package, please make sure that 'rna_tools.tools.renum_pdb_to_aln.test_data' is explicitly added 2025-12-08T19:40:00,696 to the `packages` configuration field. 2025-12-08T19:40:00,697 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,697 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,698 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,699 If you don't want 'rna_tools.tools.renum_pdb_to_aln.test_data' to be distributed and are 2025-12-08T19:40:00,700 already explicitly excluding 'rna_tools.tools.renum_pdb_to_aln.test_data' via 2025-12-08T19:40:00,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,701 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,702 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,704 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,704 even if it does not contain any `.py` files. 2025-12-08T19:40:00,705 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,705 directory, all directories are treated like packages. 2025-12-08T19:40:00,705 ******************************************************************************** 2025-12-08T19:40:00,706 !! 2025-12-08T19:40:00,707 check.warn(importable) 2025-12-08T19:40:00,707 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_alignment.pngs' is absent from the `packages` configuration. 2025-12-08T19:40:00,707 !! 2025-12-08T19:40:00,708 ******************************************************************************** 2025-12-08T19:40:00,708 ############################ 2025-12-08T19:40:00,709 # Package would be ignored # 2025-12-08T19:40:00,709 ############################ 2025-12-08T19:40:00,710 Python recognizes 'rna_tools.tools.rna_alignment.pngs' as an importable package[^1], 2025-12-08T19:40:00,710 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,711 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,711 package, please make sure that 'rna_tools.tools.rna_alignment.pngs' is explicitly added 2025-12-08T19:40:00,711 to the `packages` configuration field. 2025-12-08T19:40:00,712 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,713 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,713 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,714 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,714 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,715 If you don't want 'rna_tools.tools.rna_alignment.pngs' to be distributed and are 2025-12-08T19:40:00,716 already explicitly excluding 'rna_tools.tools.rna_alignment.pngs' via 2025-12-08T19:40:00,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,716 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,717 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,717 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,718 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,719 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,720 even if it does not contain any `.py` files. 2025-12-08T19:40:00,720 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,720 directory, all directories are treated like packages. 2025-12-08T19:40:00,721 ******************************************************************************** 2025-12-08T19:40:00,721 !! 2025-12-08T19:40:00,722 check.warn(importable) 2025-12-08T19:40:00,722 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_alignment.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,722 !! 2025-12-08T19:40:00,723 ******************************************************************************** 2025-12-08T19:40:00,723 ############################ 2025-12-08T19:40:00,724 # Package would be ignored # 2025-12-08T19:40:00,724 ############################ 2025-12-08T19:40:00,725 Python recognizes 'rna_tools.tools.rna_alignment.test_data' as an importable package[^1], 2025-12-08T19:40:00,725 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,726 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,726 package, please make sure that 'rna_tools.tools.rna_alignment.test_data' is explicitly added 2025-12-08T19:40:00,726 to the `packages` configuration field. 2025-12-08T19:40:00,727 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,728 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,728 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,729 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,729 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,730 If you don't want 'rna_tools.tools.rna_alignment.test_data' to be distributed and are 2025-12-08T19:40:00,731 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data' via 2025-12-08T19:40:00,731 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,731 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,732 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,733 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,733 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,734 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,735 even if it does not contain any `.py` files. 2025-12-08T19:40:00,735 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,736 directory, all directories are treated like packages. 2025-12-08T19:40:00,736 ******************************************************************************** 2025-12-08T19:40:00,737 !! 2025-12-08T19:40:00,737 check.warn(importable) 2025-12-08T19:40:00,737 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.foldability' is absent from the `packages` configuration. 2025-12-08T19:40:00,738 !! 2025-12-08T19:40:00,738 ******************************************************************************** 2025-12-08T19:40:00,739 ############################ 2025-12-08T19:40:00,739 # Package would be ignored # 2025-12-08T19:40:00,740 ############################ 2025-12-08T19:40:00,740 Python recognizes 'rna_tools.tools.rna_alignment.test_data.foldability' as an importable package[^1], 2025-12-08T19:40:00,740 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,741 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,741 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.foldability' is explicitly added 2025-12-08T19:40:00,742 to the `packages` configuration field. 2025-12-08T19:40:00,742 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,743 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,743 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,744 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,746 If you don't want 'rna_tools.tools.rna_alignment.test_data.foldability' to be distributed and are 2025-12-08T19:40:00,746 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.foldability' via 2025-12-08T19:40:00,746 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,747 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,748 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,750 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,750 even if it does not contain any `.py` files. 2025-12-08T19:40:00,750 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,751 directory, all directories are treated like packages. 2025-12-08T19:40:00,751 ******************************************************************************** 2025-12-08T19:40:00,752 !! 2025-12-08T19:40:00,752 check.warn(importable) 2025-12-08T19:40:00,752 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is absent from the `packages` configuration. 2025-12-08T19:40:00,753 !! 2025-12-08T19:40:00,754 ******************************************************************************** 2025-12-08T19:40:00,754 ############################ 2025-12-08T19:40:00,754 # Package would be ignored # 2025-12-08T19:40:00,755 ############################ 2025-12-08T19:40:00,755 Python recognizes 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' as an importable package[^1], 2025-12-08T19:40:00,755 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,756 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,757 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is explicitly added 2025-12-08T19:40:00,757 to the `packages` configuration field. 2025-12-08T19:40:00,758 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,759 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,759 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,761 If you don't want 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' to be distributed and are 2025-12-08T19:40:00,761 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' via 2025-12-08T19:40:00,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,762 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,763 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,763 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,764 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,765 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,765 even if it does not contain any `.py` files. 2025-12-08T19:40:00,766 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,766 directory, all directories are treated like packages. 2025-12-08T19:40:00,767 ******************************************************************************** 2025-12-08T19:40:00,767 !! 2025-12-08T19:40:00,768 check.warn(importable) 2025-12-08T19:40:00,768 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_alignment.test_output' is absent from the `packages` configuration. 2025-12-08T19:40:00,768 !! 2025-12-08T19:40:00,769 ******************************************************************************** 2025-12-08T19:40:00,769 ############################ 2025-12-08T19:40:00,770 # Package would be ignored # 2025-12-08T19:40:00,770 ############################ 2025-12-08T19:40:00,771 Python recognizes 'rna_tools.tools.rna_alignment.test_output' as an importable package[^1], 2025-12-08T19:40:00,771 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,772 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,772 package, please make sure that 'rna_tools.tools.rna_alignment.test_output' is explicitly added 2025-12-08T19:40:00,772 to the `packages` configuration field. 2025-12-08T19:40:00,773 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,773 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,774 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,775 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,775 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,776 If you don't want 'rna_tools.tools.rna_alignment.test_output' to be distributed and are 2025-12-08T19:40:00,776 already explicitly excluding 'rna_tools.tools.rna_alignment.test_output' via 2025-12-08T19:40:00,777 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,777 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,778 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,778 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,779 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,780 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,780 even if it does not contain any `.py` files. 2025-12-08T19:40:00,781 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,781 directory, all directories are treated like packages. 2025-12-08T19:40:00,782 ******************************************************************************** 2025-12-08T19:40:00,782 !! 2025-12-08T19:40:00,783 check.warn(importable) 2025-12-08T19:40:00,783 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_alignment.utils.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,783 !! 2025-12-08T19:40:00,784 ******************************************************************************** 2025-12-08T19:40:00,784 ############################ 2025-12-08T19:40:00,785 # Package would be ignored # 2025-12-08T19:40:00,785 ############################ 2025-12-08T19:40:00,786 Python recognizes 'rna_tools.tools.rna_alignment.utils.test_data' as an importable package[^1], 2025-12-08T19:40:00,786 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,787 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,787 package, please make sure that 'rna_tools.tools.rna_alignment.utils.test_data' is explicitly added 2025-12-08T19:40:00,788 to the `packages` configuration field. 2025-12-08T19:40:00,788 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,789 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,789 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,790 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,791 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,791 If you don't want 'rna_tools.tools.rna_alignment.utils.test_data' to be distributed and are 2025-12-08T19:40:00,792 already explicitly excluding 'rna_tools.tools.rna_alignment.utils.test_data' via 2025-12-08T19:40:00,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,793 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,793 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,794 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,796 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,796 even if it does not contain any `.py` files. 2025-12-08T19:40:00,796 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,797 directory, all directories are treated like packages. 2025-12-08T19:40:00,797 ******************************************************************************** 2025-12-08T19:40:00,798 !! 2025-12-08T19:40:00,798 check.warn(importable) 2025-12-08T19:40:00,799 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_binding_affinity' is absent from the `packages` configuration. 2025-12-08T19:40:00,799 !! 2025-12-08T19:40:00,800 ******************************************************************************** 2025-12-08T19:40:00,800 ############################ 2025-12-08T19:40:00,800 # Package would be ignored # 2025-12-08T19:40:00,801 ############################ 2025-12-08T19:40:00,801 Python recognizes 'rna_tools.tools.rna_binding_affinity' as an importable package[^1], 2025-12-08T19:40:00,802 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,802 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,803 package, please make sure that 'rna_tools.tools.rna_binding_affinity' is explicitly added 2025-12-08T19:40:00,803 to the `packages` configuration field. 2025-12-08T19:40:00,804 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,804 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,804 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,805 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,806 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,807 If you don't want 'rna_tools.tools.rna_binding_affinity' to be distributed and are 2025-12-08T19:40:00,807 already explicitly excluding 'rna_tools.tools.rna_binding_affinity' via 2025-12-08T19:40:00,807 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,808 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,808 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,809 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,810 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,811 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,811 even if it does not contain any `.py` files. 2025-12-08T19:40:00,811 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,812 directory, all directories are treated like packages. 2025-12-08T19:40:00,812 ******************************************************************************** 2025-12-08T19:40:00,813 !! 2025-12-08T19:40:00,813 check.warn(importable) 2025-12-08T19:40:00,814 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,814 !! 2025-12-08T19:40:00,815 ******************************************************************************** 2025-12-08T19:40:00,815 ############################ 2025-12-08T19:40:00,815 # Package would be ignored # 2025-12-08T19:40:00,816 ############################ 2025-12-08T19:40:00,816 Python recognizes 'rna_tools.tools.rna_calc_evo_rmsd.test_data' as an importable package[^1], 2025-12-08T19:40:00,817 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,817 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,818 package, please make sure that 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is explicitly added 2025-12-08T19:40:00,818 to the `packages` configuration field. 2025-12-08T19:40:00,819 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,819 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,820 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,821 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,821 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,822 If you don't want 'rna_tools.tools.rna_calc_evo_rmsd.test_data' to be distributed and are 2025-12-08T19:40:00,822 already explicitly excluding 'rna_tools.tools.rna_calc_evo_rmsd.test_data' via 2025-12-08T19:40:00,823 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,823 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,823 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,824 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,825 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,826 even if it does not contain any `.py` files. 2025-12-08T19:40:00,827 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,827 directory, all directories are treated like packages. 2025-12-08T19:40:00,828 ******************************************************************************** 2025-12-08T19:40:00,828 !! 2025-12-08T19:40:00,829 check.warn(importable) 2025-12-08T19:40:00,829 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_gdt' is absent from the `packages` configuration. 2025-12-08T19:40:00,829 !! 2025-12-08T19:40:00,830 ******************************************************************************** 2025-12-08T19:40:00,830 ############################ 2025-12-08T19:40:00,831 # Package would be ignored # 2025-12-08T19:40:00,831 ############################ 2025-12-08T19:40:00,832 Python recognizes 'rna_tools.tools.rna_calc_gdt' as an importable package[^1], 2025-12-08T19:40:00,832 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,833 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,833 package, please make sure that 'rna_tools.tools.rna_calc_gdt' is explicitly added 2025-12-08T19:40:00,833 to the `packages` configuration field. 2025-12-08T19:40:00,834 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,835 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,836 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,837 If you don't want 'rna_tools.tools.rna_calc_gdt' to be distributed and are 2025-12-08T19:40:00,837 already explicitly excluding 'rna_tools.tools.rna_calc_gdt' via 2025-12-08T19:40:00,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,838 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,839 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,841 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,841 even if it does not contain any `.py` files. 2025-12-08T19:40:00,842 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,842 directory, all directories are treated like packages. 2025-12-08T19:40:00,842 ******************************************************************************** 2025-12-08T19:40:00,843 !! 2025-12-08T19:40:00,843 check.warn(importable) 2025-12-08T19:40:00,844 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_hbonds' is absent from the `packages` configuration. 2025-12-08T19:40:00,844 !! 2025-12-08T19:40:00,845 ******************************************************************************** 2025-12-08T19:40:00,846 ############################ 2025-12-08T19:40:00,846 # Package would be ignored # 2025-12-08T19:40:00,846 ############################ 2025-12-08T19:40:00,847 Python recognizes 'rna_tools.tools.rna_calc_hbonds' as an importable package[^1], 2025-12-08T19:40:00,847 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,848 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,848 package, please make sure that 'rna_tools.tools.rna_calc_hbonds' is explicitly added 2025-12-08T19:40:00,849 to the `packages` configuration field. 2025-12-08T19:40:00,850 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,850 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,850 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,851 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,852 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,852 If you don't want 'rna_tools.tools.rna_calc_hbonds' to be distributed and are 2025-12-08T19:40:00,853 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds' via 2025-12-08T19:40:00,853 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,854 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,854 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,855 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,855 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,856 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,857 even if it does not contain any `.py` files. 2025-12-08T19:40:00,857 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,858 directory, all directories are treated like packages. 2025-12-08T19:40:00,858 ******************************************************************************** 2025-12-08T19:40:00,859 !! 2025-12-08T19:40:00,859 check.warn(importable) 2025-12-08T19:40:00,859 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.docs' is absent from the `packages` configuration. 2025-12-08T19:40:00,860 !! 2025-12-08T19:40:00,860 ******************************************************************************** 2025-12-08T19:40:00,861 ############################ 2025-12-08T19:40:00,861 # Package would be ignored # 2025-12-08T19:40:00,861 ############################ 2025-12-08T19:40:00,862 Python recognizes 'rna_tools.tools.rna_calc_hbonds.docs' as an importable package[^1], 2025-12-08T19:40:00,862 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,863 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,863 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.docs' is explicitly added 2025-12-08T19:40:00,864 to the `packages` configuration field. 2025-12-08T19:40:00,864 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,865 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,865 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,866 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,867 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,867 If you don't want 'rna_tools.tools.rna_calc_hbonds.docs' to be distributed and are 2025-12-08T19:40:00,868 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.docs' via 2025-12-08T19:40:00,868 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,868 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,869 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,870 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,870 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,871 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,872 even if it does not contain any `.py` files. 2025-12-08T19:40:00,872 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,872 directory, all directories are treated like packages. 2025-12-08T19:40:00,873 ******************************************************************************** 2025-12-08T19:40:00,873 !! 2025-12-08T19:40:00,874 check.warn(importable) 2025-12-08T19:40:00,874 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,875 !! 2025-12-08T19:40:00,876 ******************************************************************************** 2025-12-08T19:40:00,876 ############################ 2025-12-08T19:40:00,876 # Package would be ignored # 2025-12-08T19:40:00,877 ############################ 2025-12-08T19:40:00,877 Python recognizes 'rna_tools.tools.rna_calc_hbonds.test_data' as an importable package[^1], 2025-12-08T19:40:00,877 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,878 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,879 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.test_data' is explicitly added 2025-12-08T19:40:00,879 to the `packages` configuration field. 2025-12-08T19:40:00,880 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,880 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,881 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,883 If you don't want 'rna_tools.tools.rna_calc_hbonds.test_data' to be distributed and are 2025-12-08T19:40:00,883 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.test_data' via 2025-12-08T19:40:00,883 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,884 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,884 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,885 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,887 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,887 even if it does not contain any `.py` files. 2025-12-08T19:40:00,887 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,888 directory, all directories are treated like packages. 2025-12-08T19:40:00,888 ******************************************************************************** 2025-12-08T19:40:00,889 !! 2025-12-08T19:40:00,889 check.warn(importable) 2025-12-08T19:40:00,889 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_inf.doc' is absent from the `packages` configuration. 2025-12-08T19:40:00,890 !! 2025-12-08T19:40:00,891 ******************************************************************************** 2025-12-08T19:40:00,891 ############################ 2025-12-08T19:40:00,891 # Package would be ignored # 2025-12-08T19:40:00,892 ############################ 2025-12-08T19:40:00,892 Python recognizes 'rna_tools.tools.rna_calc_inf.doc' as an importable package[^1], 2025-12-08T19:40:00,892 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,893 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,893 package, please make sure that 'rna_tools.tools.rna_calc_inf.doc' is explicitly added 2025-12-08T19:40:00,894 to the `packages` configuration field. 2025-12-08T19:40:00,895 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,895 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,896 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,896 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,898 If you don't want 'rna_tools.tools.rna_calc_inf.doc' to be distributed and are 2025-12-08T19:40:00,898 already explicitly excluding 'rna_tools.tools.rna_calc_inf.doc' via 2025-12-08T19:40:00,899 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,899 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,899 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,900 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,902 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,902 even if it does not contain any `.py` files. 2025-12-08T19:40:00,903 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,903 directory, all directories are treated like packages. 2025-12-08T19:40:00,903 ******************************************************************************** 2025-12-08T19:40:00,904 !! 2025-12-08T19:40:00,905 check.warn(importable) 2025-12-08T19:40:00,905 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,906 !! 2025-12-08T19:40:00,906 ******************************************************************************** 2025-12-08T19:40:00,907 ############################ 2025-12-08T19:40:00,907 # Package would be ignored # 2025-12-08T19:40:00,907 ############################ 2025-12-08T19:40:00,908 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data' as an importable package[^1], 2025-12-08T19:40:00,908 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,909 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,909 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data' is explicitly added 2025-12-08T19:40:00,910 to the `packages` configuration field. 2025-12-08T19:40:00,910 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,911 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,911 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,912 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,913 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,913 If you don't want 'rna_tools.tools.rna_calc_inf.test_data' to be distributed and are 2025-12-08T19:40:00,914 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data' via 2025-12-08T19:40:00,914 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,914 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,915 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,915 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,916 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,917 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,918 even if it does not contain any `.py` files. 2025-12-08T19:40:00,918 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,918 directory, all directories are treated like packages. 2025-12-08T19:40:00,919 ******************************************************************************** 2025-12-08T19:40:00,919 !! 2025-12-08T19:40:00,920 check.warn(importable) 2025-12-08T19:40:00,920 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data.rp13' is absent from the `packages` configuration. 2025-12-08T19:40:00,921 !! 2025-12-08T19:40:00,921 ******************************************************************************** 2025-12-08T19:40:00,922 ############################ 2025-12-08T19:40:00,922 # Package would be ignored # 2025-12-08T19:40:00,922 ############################ 2025-12-08T19:40:00,923 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data.rp13' as an importable package[^1], 2025-12-08T19:40:00,923 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,924 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,924 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data.rp13' is explicitly added 2025-12-08T19:40:00,925 to the `packages` configuration field. 2025-12-08T19:40:00,925 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,926 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,926 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,927 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,928 If you don't want 'rna_tools.tools.rna_calc_inf.test_data.rp13' to be distributed and are 2025-12-08T19:40:00,929 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data.rp13' via 2025-12-08T19:40:00,929 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,929 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,930 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,930 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,931 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,932 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,933 even if it does not contain any `.py` files. 2025-12-08T19:40:00,933 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,933 directory, all directories are treated like packages. 2025-12-08T19:40:00,934 ******************************************************************************** 2025-12-08T19:40:00,935 !! 2025-12-08T19:40:00,935 check.warn(importable) 2025-12-08T19:40:00,935 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is absent from the `packages` configuration. 2025-12-08T19:40:00,936 !! 2025-12-08T19:40:00,937 ******************************************************************************** 2025-12-08T19:40:00,937 ############################ 2025-12-08T19:40:00,937 # Package would be ignored # 2025-12-08T19:40:00,938 ############################ 2025-12-08T19:40:00,938 Python recognizes 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' as an importable package[^1], 2025-12-08T19:40:00,938 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,939 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,939 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is explicitly added 2025-12-08T19:40:00,940 to the `packages` configuration field. 2025-12-08T19:40:00,941 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,941 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,942 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,943 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,943 If you don't want 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' to be distributed and are 2025-12-08T19:40:00,944 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' via 2025-12-08T19:40:00,944 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,945 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,945 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,946 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,947 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,948 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,948 even if it does not contain any `.py` files. 2025-12-08T19:40:00,948 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,949 directory, all directories are treated like packages. 2025-12-08T19:40:00,949 ******************************************************************************** 2025-12-08T19:40:00,950 !! 2025-12-08T19:40:00,950 check.warn(importable) 2025-12-08T19:40:00,951 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:00,951 !! 2025-12-08T19:40:00,952 ******************************************************************************** 2025-12-08T19:40:00,952 ############################ 2025-12-08T19:40:00,953 # Package would be ignored # 2025-12-08T19:40:00,953 ############################ 2025-12-08T19:40:00,953 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data' as an importable package[^1], 2025-12-08T19:40:00,954 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,954 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,955 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data' is explicitly added 2025-12-08T19:40:00,955 to the `packages` configuration field. 2025-12-08T19:40:00,956 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,956 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,957 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,957 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,958 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,959 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data' to be distributed and are 2025-12-08T19:40:00,959 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data' via 2025-12-08T19:40:00,959 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,960 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,960 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,961 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,962 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,963 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,963 even if it does not contain any `.py` files. 2025-12-08T19:40:00,964 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,964 directory, all directories are treated like packages. 2025-12-08T19:40:00,965 ******************************************************************************** 2025-12-08T19:40:00,965 !! 2025-12-08T19:40:00,966 check.warn(importable) 2025-12-08T19:40:00,966 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is absent from the `packages` configuration. 2025-12-08T19:40:00,966 !! 2025-12-08T19:40:00,967 ******************************************************************************** 2025-12-08T19:40:00,967 ############################ 2025-12-08T19:40:00,968 # Package would be ignored # 2025-12-08T19:40:00,968 ############################ 2025-12-08T19:40:00,969 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' as an importable package[^1], 2025-12-08T19:40:00,969 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,970 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,970 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is explicitly added 2025-12-08T19:40:00,970 to the `packages` configuration field. 2025-12-08T19:40:00,971 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,971 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,972 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,973 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,973 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,974 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' to be distributed and are 2025-12-08T19:40:00,974 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' via 2025-12-08T19:40:00,975 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,975 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,975 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,976 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,977 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,978 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,978 even if it does not contain any `.py` files. 2025-12-08T19:40:00,979 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,979 directory, all directories are treated like packages. 2025-12-08T19:40:00,979 ******************************************************************************** 2025-12-08T19:40:00,980 !! 2025-12-08T19:40:00,980 check.warn(importable) 2025-12-08T19:40:00,981 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is absent from the `packages` configuration. 2025-12-08T19:40:00,981 !! 2025-12-08T19:40:00,982 ******************************************************************************** 2025-12-08T19:40:00,982 ############################ 2025-12-08T19:40:00,983 # Package would be ignored # 2025-12-08T19:40:00,983 ############################ 2025-12-08T19:40:00,983 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' as an importable package[^1], 2025-12-08T19:40:00,984 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:00,984 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:00,985 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is explicitly added 2025-12-08T19:40:00,985 to the `packages` configuration field. 2025-12-08T19:40:00,986 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:00,986 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:00,987 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:00,987 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:00,988 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:00,989 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' to be distributed and are 2025-12-08T19:40:00,989 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' via 2025-12-08T19:40:00,990 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:00,990 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:00,990 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:00,991 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:00,992 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:00,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:00,994 even if it does not contain any `.py` files. 2025-12-08T19:40:00,994 On the other hand, currently there is no concept of package data 2025-12-08T19:40:00,995 directory, all directories are treated like packages. 2025-12-08T19:40:00,995 ******************************************************************************** 2025-12-08T19:40:00,996 !! 2025-12-08T19:40:00,996 check.warn(importable) 2025-12-08T19:40:00,996 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is absent from the `packages` configuration. 2025-12-08T19:40:00,997 !! 2025-12-08T19:40:00,998 ******************************************************************************** 2025-12-08T19:40:00,998 ############################ 2025-12-08T19:40:00,998 # Package would be ignored # 2025-12-08T19:40:00,999 ############################ 2025-12-08T19:40:00,999 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.ways' as an importable package[^1], 2025-12-08T19:40:00,999 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,000 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,000 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is explicitly added 2025-12-08T19:40:01,001 to the `packages` configuration field. 2025-12-08T19:40:01,002 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,002 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,002 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,003 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,004 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,004 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.ways' to be distributed and are 2025-12-08T19:40:01,005 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.ways' via 2025-12-08T19:40:01,005 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,006 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,006 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,007 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,007 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,008 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,009 even if it does not contain any `.py` files. 2025-12-08T19:40:01,009 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,009 directory, all directories are treated like packages. 2025-12-08T19:40:01,010 ******************************************************************************** 2025-12-08T19:40:01,011 !! 2025-12-08T19:40:01,011 check.warn(importable) 2025-12-08T19:40:01,011 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_output' is absent from the `packages` configuration. 2025-12-08T19:40:01,012 !! 2025-12-08T19:40:01,012 ******************************************************************************** 2025-12-08T19:40:01,013 ############################ 2025-12-08T19:40:01,013 # Package would be ignored # 2025-12-08T19:40:01,014 ############################ 2025-12-08T19:40:01,014 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_output' as an importable package[^1], 2025-12-08T19:40:01,014 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,015 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,015 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_output' is explicitly added 2025-12-08T19:40:01,016 to the `packages` configuration field. 2025-12-08T19:40:01,016 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,017 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,018 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,020 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_output' to be distributed and are 2025-12-08T19:40:01,020 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_output' via 2025-12-08T19:40:01,020 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,021 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,021 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,022 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,024 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,024 even if it does not contain any `.py` files. 2025-12-08T19:40:01,025 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,025 directory, all directories are treated like packages. 2025-12-08T19:40:01,025 ******************************************************************************** 2025-12-08T19:40:01,026 !! 2025-12-08T19:40:01,026 check.warn(importable) 2025-12-08T19:40:01,027 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is absent from the `packages` configuration. 2025-12-08T19:40:01,027 !! 2025-12-08T19:40:01,028 ******************************************************************************** 2025-12-08T19:40:01,028 ############################ 2025-12-08T19:40:01,029 # Package would be ignored # 2025-12-08T19:40:01,029 ############################ 2025-12-08T19:40:01,029 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' as an importable package[^1], 2025-12-08T19:40:01,030 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,030 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,031 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is explicitly added 2025-12-08T19:40:01,031 to the `packages` configuration field. 2025-12-08T19:40:01,032 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,032 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,033 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,033 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,034 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,035 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' to be distributed and are 2025-12-08T19:40:01,035 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' via 2025-12-08T19:40:01,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,036 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,036 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,037 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,038 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,039 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,039 even if it does not contain any `.py` files. 2025-12-08T19:40:01,040 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,040 directory, all directories are treated like packages. 2025-12-08T19:40:01,040 ******************************************************************************** 2025-12-08T19:40:01,041 !! 2025-12-08T19:40:01,041 check.warn(importable) 2025-12-08T19:40:01,042 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,042 !! 2025-12-08T19:40:01,043 ******************************************************************************** 2025-12-08T19:40:01,043 ############################ 2025-12-08T19:40:01,044 # Package would be ignored # 2025-12-08T19:40:01,044 ############################ 2025-12-08T19:40:01,044 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' as an importable package[^1], 2025-12-08T19:40:01,045 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,046 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,046 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is explicitly added 2025-12-08T19:40:01,046 to the `packages` configuration field. 2025-12-08T19:40:01,047 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,048 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,048 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,049 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,050 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,050 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' to be distributed and are 2025-12-08T19:40:01,051 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' via 2025-12-08T19:40:01,051 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,052 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,052 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,053 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,053 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,054 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,055 even if it does not contain any `.py` files. 2025-12-08T19:40:01,055 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,056 directory, all directories are treated like packages. 2025-12-08T19:40:01,056 ******************************************************************************** 2025-12-08T19:40:01,057 !! 2025-12-08T19:40:01,057 check.warn(importable) 2025-12-08T19:40:01,057 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_filter.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,058 !! 2025-12-08T19:40:01,059 ******************************************************************************** 2025-12-08T19:40:01,059 ############################ 2025-12-08T19:40:01,059 # Package would be ignored # 2025-12-08T19:40:01,060 ############################ 2025-12-08T19:40:01,060 Python recognizes 'rna_tools.tools.rna_filter.test_data' as an importable package[^1], 2025-12-08T19:40:01,060 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,061 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,061 package, please make sure that 'rna_tools.tools.rna_filter.test_data' is explicitly added 2025-12-08T19:40:01,062 to the `packages` configuration field. 2025-12-08T19:40:01,062 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,063 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,064 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,065 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,065 If you don't want 'rna_tools.tools.rna_filter.test_data' to be distributed and are 2025-12-08T19:40:01,066 already explicitly excluding 'rna_tools.tools.rna_filter.test_data' via 2025-12-08T19:40:01,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,067 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,067 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,068 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,068 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,069 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,070 even if it does not contain any `.py` files. 2025-12-08T19:40:01,070 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,070 directory, all directories are treated like packages. 2025-12-08T19:40:01,071 ******************************************************************************** 2025-12-08T19:40:01,072 !! 2025-12-08T19:40:01,072 check.warn(importable) 2025-12-08T19:40:01,072 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_get_restraints' is absent from the `packages` configuration. 2025-12-08T19:40:01,073 !! 2025-12-08T19:40:01,073 ******************************************************************************** 2025-12-08T19:40:01,074 ############################ 2025-12-08T19:40:01,074 # Package would be ignored # 2025-12-08T19:40:01,074 ############################ 2025-12-08T19:40:01,075 Python recognizes 'rna_tools.tools.rna_get_restraints' as an importable package[^1], 2025-12-08T19:40:01,075 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,076 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,076 package, please make sure that 'rna_tools.tools.rna_get_restraints' is explicitly added 2025-12-08T19:40:01,077 to the `packages` configuration field. 2025-12-08T19:40:01,078 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,078 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,079 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,080 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,081 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,082 If you don't want 'rna_tools.tools.rna_get_restraints' to be distributed and are 2025-12-08T19:40:01,082 already explicitly excluding 'rna_tools.tools.rna_get_restraints' via 2025-12-08T19:40:01,082 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,083 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,084 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,085 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,086 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,086 even if it does not contain any `.py` files. 2025-12-08T19:40:01,087 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,087 directory, all directories are treated like packages. 2025-12-08T19:40:01,087 ******************************************************************************** 2025-12-08T19:40:01,088 !! 2025-12-08T19:40:01,088 check.warn(importable) 2025-12-08T19:40:01,089 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_helix_vis.doc' is absent from the `packages` configuration. 2025-12-08T19:40:01,089 !! 2025-12-08T19:40:01,090 ******************************************************************************** 2025-12-08T19:40:01,090 ############################ 2025-12-08T19:40:01,091 # Package would be ignored # 2025-12-08T19:40:01,091 ############################ 2025-12-08T19:40:01,091 Python recognizes 'rna_tools.tools.rna_helix_vis.doc' as an importable package[^1], 2025-12-08T19:40:01,092 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,092 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,093 package, please make sure that 'rna_tools.tools.rna_helix_vis.doc' is explicitly added 2025-12-08T19:40:01,093 to the `packages` configuration field. 2025-12-08T19:40:01,094 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,095 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,096 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,096 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,097 If you don't want 'rna_tools.tools.rna_helix_vis.doc' to be distributed and are 2025-12-08T19:40:01,097 already explicitly excluding 'rna_tools.tools.rna_helix_vis.doc' via 2025-12-08T19:40:01,098 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,098 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,099 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,099 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,100 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,101 even if it does not contain any `.py` files. 2025-12-08T19:40:01,102 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,102 directory, all directories are treated like packages. 2025-12-08T19:40:01,102 ******************************************************************************** 2025-12-08T19:40:01,103 !! 2025-12-08T19:40:01,104 check.warn(importable) 2025-12-08T19:40:01,104 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_helix_vis.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,104 !! 2025-12-08T19:40:01,105 ******************************************************************************** 2025-12-08T19:40:01,105 ############################ 2025-12-08T19:40:01,106 # Package would be ignored # 2025-12-08T19:40:01,106 ############################ 2025-12-08T19:40:01,107 Python recognizes 'rna_tools.tools.rna_helix_vis.test_data' as an importable package[^1], 2025-12-08T19:40:01,107 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,108 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,108 package, please make sure that 'rna_tools.tools.rna_helix_vis.test_data' is explicitly added 2025-12-08T19:40:01,109 to the `packages` configuration field. 2025-12-08T19:40:01,109 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,110 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,110 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,111 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,112 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,113 If you don't want 'rna_tools.tools.rna_helix_vis.test_data' to be distributed and are 2025-12-08T19:40:01,113 already explicitly excluding 'rna_tools.tools.rna_helix_vis.test_data' via 2025-12-08T19:40:01,113 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,114 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,114 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,115 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,116 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,117 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,117 even if it does not contain any `.py` files. 2025-12-08T19:40:01,117 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,118 directory, all directories are treated like packages. 2025-12-08T19:40:01,118 ******************************************************************************** 2025-12-08T19:40:01,119 !! 2025-12-08T19:40:01,119 check.warn(importable) 2025-12-08T19:40:01,120 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_multimodels' is absent from the `packages` configuration. 2025-12-08T19:40:01,120 !! 2025-12-08T19:40:01,121 ******************************************************************************** 2025-12-08T19:40:01,121 ############################ 2025-12-08T19:40:01,121 # Package would be ignored # 2025-12-08T19:40:01,122 ############################ 2025-12-08T19:40:01,122 Python recognizes 'rna_tools.tools.rna_multimodels' as an importable package[^1], 2025-12-08T19:40:01,123 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,123 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,124 package, please make sure that 'rna_tools.tools.rna_multimodels' is explicitly added 2025-12-08T19:40:01,124 to the `packages` configuration field. 2025-12-08T19:40:01,125 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,125 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,126 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,127 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,128 If you don't want 'rna_tools.tools.rna_multimodels' to be distributed and are 2025-12-08T19:40:01,128 already explicitly excluding 'rna_tools.tools.rna_multimodels' via 2025-12-08T19:40:01,128 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,129 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,129 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,130 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,132 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,132 even if it does not contain any `.py` files. 2025-12-08T19:40:01,132 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,133 directory, all directories are treated like packages. 2025-12-08T19:40:01,133 ******************************************************************************** 2025-12-08T19:40:01,134 !! 2025-12-08T19:40:01,134 check.warn(importable) 2025-12-08T19:40:01,134 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_multimodels.data' is absent from the `packages` configuration. 2025-12-08T19:40:01,135 !! 2025-12-08T19:40:01,136 ******************************************************************************** 2025-12-08T19:40:01,136 ############################ 2025-12-08T19:40:01,137 # Package would be ignored # 2025-12-08T19:40:01,137 ############################ 2025-12-08T19:40:01,137 Python recognizes 'rna_tools.tools.rna_multimodels.data' as an importable package[^1], 2025-12-08T19:40:01,138 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,139 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,139 package, please make sure that 'rna_tools.tools.rna_multimodels.data' is explicitly added 2025-12-08T19:40:01,139 to the `packages` configuration field. 2025-12-08T19:40:01,140 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,141 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,141 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,142 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,143 If you don't want 'rna_tools.tools.rna_multimodels.data' to be distributed and are 2025-12-08T19:40:01,144 already explicitly excluding 'rna_tools.tools.rna_multimodels.data' via 2025-12-08T19:40:01,144 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,144 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,145 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,145 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,146 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,147 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,148 even if it does not contain any `.py` files. 2025-12-08T19:40:01,148 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,148 directory, all directories are treated like packages. 2025-12-08T19:40:01,149 ******************************************************************************** 2025-12-08T19:40:01,149 !! 2025-12-08T19:40:01,150 check.warn(importable) 2025-12-08T19:40:01,150 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_multimodels.test_in' is absent from the `packages` configuration. 2025-12-08T19:40:01,150 !! 2025-12-08T19:40:01,151 ******************************************************************************** 2025-12-08T19:40:01,152 ############################ 2025-12-08T19:40:01,152 # Package would be ignored # 2025-12-08T19:40:01,152 ############################ 2025-12-08T19:40:01,153 Python recognizes 'rna_tools.tools.rna_multimodels.test_in' as an importable package[^1], 2025-12-08T19:40:01,153 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,154 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,154 package, please make sure that 'rna_tools.tools.rna_multimodels.test_in' is explicitly added 2025-12-08T19:40:01,154 to the `packages` configuration field. 2025-12-08T19:40:01,155 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,156 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,156 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,157 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,157 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,158 If you don't want 'rna_tools.tools.rna_multimodels.test_in' to be distributed and are 2025-12-08T19:40:01,158 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_in' via 2025-12-08T19:40:01,159 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,159 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,159 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,160 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,161 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,162 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,162 even if it does not contain any `.py` files. 2025-12-08T19:40:01,163 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,163 directory, all directories are treated like packages. 2025-12-08T19:40:01,163 ******************************************************************************** 2025-12-08T19:40:01,164 !! 2025-12-08T19:40:01,165 check.warn(importable) 2025-12-08T19:40:01,165 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_multimodels.test_out' is absent from the `packages` configuration. 2025-12-08T19:40:01,165 !! 2025-12-08T19:40:01,166 ******************************************************************************** 2025-12-08T19:40:01,167 ############################ 2025-12-08T19:40:01,167 # Package would be ignored # 2025-12-08T19:40:01,167 ############################ 2025-12-08T19:40:01,168 Python recognizes 'rna_tools.tools.rna_multimodels.test_out' as an importable package[^1], 2025-12-08T19:40:01,168 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,169 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,169 package, please make sure that 'rna_tools.tools.rna_multimodels.test_out' is explicitly added 2025-12-08T19:40:01,170 to the `packages` configuration field. 2025-12-08T19:40:01,170 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,171 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,171 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,172 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,173 If you don't want 'rna_tools.tools.rna_multimodels.test_out' to be distributed and are 2025-12-08T19:40:01,174 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_out' via 2025-12-08T19:40:01,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,175 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,175 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,176 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,178 even if it does not contain any `.py` files. 2025-12-08T19:40:01,178 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,178 directory, all directories are treated like packages. 2025-12-08T19:40:01,179 ******************************************************************************** 2025-12-08T19:40:01,179 !! 2025-12-08T19:40:01,180 check.warn(importable) 2025-12-08T19:40:01,180 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,180 !! 2025-12-08T19:40:01,181 ******************************************************************************** 2025-12-08T19:40:01,181 ############################ 2025-12-08T19:40:01,182 # Package would be ignored # 2025-12-08T19:40:01,182 ############################ 2025-12-08T19:40:01,183 Python recognizes 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' as an importable package[^1], 2025-12-08T19:40:01,183 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,184 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,184 package, please make sure that 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is explicitly added 2025-12-08T19:40:01,184 to the `packages` configuration field. 2025-12-08T19:40:01,185 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,185 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,186 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,187 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,187 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,188 If you don't want 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' to be distributed and are 2025-12-08T19:40:01,188 already explicitly excluding 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' via 2025-12-08T19:40:01,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,189 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,189 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,190 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,191 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,192 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,193 even if it does not contain any `.py` files. 2025-12-08T19:40:01,193 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,193 directory, all directories are treated like packages. 2025-12-08T19:40:01,194 ******************************************************************************** 2025-12-08T19:40:01,195 !! 2025-12-08T19:40:01,195 check.warn(importable) 2025-12-08T19:40:01,195 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,196 !! 2025-12-08T19:40:01,197 ******************************************************************************** 2025-12-08T19:40:01,197 ############################ 2025-12-08T19:40:01,197 # Package would be ignored # 2025-12-08T19:40:01,198 ############################ 2025-12-08T19:40:01,198 Python recognizes 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' as an importable package[^1], 2025-12-08T19:40:01,198 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,199 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,199 package, please make sure that 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is explicitly added 2025-12-08T19:40:01,200 to the `packages` configuration field. 2025-12-08T19:40:01,201 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,201 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,201 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,202 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,203 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,203 If you don't want 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' to be distributed and are 2025-12-08T19:40:01,204 already explicitly excluding 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' via 2025-12-08T19:40:01,204 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,205 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,205 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,206 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,206 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,208 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,208 even if it does not contain any `.py` files. 2025-12-08T19:40:01,209 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,209 directory, all directories are treated like packages. 2025-12-08T19:40:01,210 ******************************************************************************** 2025-12-08T19:40:01,210 !! 2025-12-08T19:40:01,211 check.warn(importable) 2025-12-08T19:40:01,211 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_prediction_significance.opt' is absent from the `packages` configuration. 2025-12-08T19:40:01,212 !! 2025-12-08T19:40:01,213 ******************************************************************************** 2025-12-08T19:40:01,213 ############################ 2025-12-08T19:40:01,213 # Package would be ignored # 2025-12-08T19:40:01,214 ############################ 2025-12-08T19:40:01,214 Python recognizes 'rna_tools.tools.rna_prediction_significance.opt' as an importable package[^1], 2025-12-08T19:40:01,214 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,215 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,216 package, please make sure that 'rna_tools.tools.rna_prediction_significance.opt' is explicitly added 2025-12-08T19:40:01,216 to the `packages` configuration field. 2025-12-08T19:40:01,217 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,217 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,217 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,218 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,219 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,220 If you don't want 'rna_tools.tools.rna_prediction_significance.opt' to be distributed and are 2025-12-08T19:40:01,220 already explicitly excluding 'rna_tools.tools.rna_prediction_significance.opt' via 2025-12-08T19:40:01,220 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,221 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,221 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,222 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,223 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,224 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,224 even if it does not contain any `.py` files. 2025-12-08T19:40:01,225 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,225 directory, all directories are treated like packages. 2025-12-08T19:40:01,226 ******************************************************************************** 2025-12-08T19:40:01,226 !! 2025-12-08T19:40:01,227 check.warn(importable) 2025-12-08T19:40:01,227 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_refinement.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,228 !! 2025-12-08T19:40:01,228 ******************************************************************************** 2025-12-08T19:40:01,229 ############################ 2025-12-08T19:40:01,229 # Package would be ignored # 2025-12-08T19:40:01,230 ############################ 2025-12-08T19:40:01,230 Python recognizes 'rna_tools.tools.rna_refinement.test_data' as an importable package[^1], 2025-12-08T19:40:01,230 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,231 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,231 package, please make sure that 'rna_tools.tools.rna_refinement.test_data' is explicitly added 2025-12-08T19:40:01,232 to the `packages` configuration field. 2025-12-08T19:40:01,232 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,233 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,233 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,234 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,235 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,235 If you don't want 'rna_tools.tools.rna_refinement.test_data' to be distributed and are 2025-12-08T19:40:01,236 already explicitly excluding 'rna_tools.tools.rna_refinement.test_data' via 2025-12-08T19:40:01,236 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,237 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,237 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,238 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,238 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,239 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,240 even if it does not contain any `.py` files. 2025-12-08T19:40:01,240 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,240 directory, all directories are treated like packages. 2025-12-08T19:40:01,241 ******************************************************************************** 2025-12-08T19:40:01,242 !! 2025-12-08T19:40:01,242 check.warn(importable) 2025-12-08T19:40:01,242 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_rfam' is absent from the `packages` configuration. 2025-12-08T19:40:01,243 !! 2025-12-08T19:40:01,244 ******************************************************************************** 2025-12-08T19:40:01,244 ############################ 2025-12-08T19:40:01,244 # Package would be ignored # 2025-12-08T19:40:01,245 ############################ 2025-12-08T19:40:01,245 Python recognizes 'rna_tools.tools.rna_rfam' as an importable package[^1], 2025-12-08T19:40:01,245 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,246 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,247 package, please make sure that 'rna_tools.tools.rna_rfam' is explicitly added 2025-12-08T19:40:01,247 to the `packages` configuration field. 2025-12-08T19:40:01,248 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,248 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,248 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,249 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,250 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,251 If you don't want 'rna_tools.tools.rna_rfam' to be distributed and are 2025-12-08T19:40:01,251 already explicitly excluding 'rna_tools.tools.rna_rfam' via 2025-12-08T19:40:01,251 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,252 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,252 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,253 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,254 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,255 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,255 even if it does not contain any `.py` files. 2025-12-08T19:40:01,256 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,256 directory, all directories are treated like packages. 2025-12-08T19:40:01,257 ******************************************************************************** 2025-12-08T19:40:01,257 !! 2025-12-08T19:40:01,258 check.warn(importable) 2025-12-08T19:40:01,258 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,258 !! 2025-12-08T19:40:01,259 ******************************************************************************** 2025-12-08T19:40:01,259 ############################ 2025-12-08T19:40:01,260 # Package would be ignored # 2025-12-08T19:40:01,260 ############################ 2025-12-08T19:40:01,261 Python recognizes 'rna_tools.tools.rna_rosetta.test_data' as an importable package[^1], 2025-12-08T19:40:01,261 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,262 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,262 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data' is explicitly added 2025-12-08T19:40:01,262 to the `packages` configuration field. 2025-12-08T19:40:01,263 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,263 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,264 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,264 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,265 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,266 If you don't want 'rna_tools.tools.rna_rosetta.test_data' to be distributed and are 2025-12-08T19:40:01,266 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data' via 2025-12-08T19:40:01,267 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,267 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,268 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,268 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,269 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,270 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,270 even if it does not contain any `.py` files. 2025-12-08T19:40:01,271 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,271 directory, all directories are treated like packages. 2025-12-08T19:40:01,272 ******************************************************************************** 2025-12-08T19:40:01,272 !! 2025-12-08T19:40:01,273 check.warn(importable) 2025-12-08T19:40:01,273 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data.tl' is absent from the `packages` configuration. 2025-12-08T19:40:01,273 !! 2025-12-08T19:40:01,274 ******************************************************************************** 2025-12-08T19:40:01,274 ############################ 2025-12-08T19:40:01,275 # Package would be ignored # 2025-12-08T19:40:01,275 ############################ 2025-12-08T19:40:01,275 Python recognizes 'rna_tools.tools.rna_rosetta.test_data.tl' as an importable package[^1], 2025-12-08T19:40:01,276 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,277 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,277 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data.tl' is explicitly added 2025-12-08T19:40:01,277 to the `packages` configuration field. 2025-12-08T19:40:01,278 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,279 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,279 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,280 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,281 If you don't want 'rna_tools.tools.rna_rosetta.test_data.tl' to be distributed and are 2025-12-08T19:40:01,281 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data.tl' via 2025-12-08T19:40:01,282 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,283 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,283 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,284 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,285 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,286 even if it does not contain any `.py` files. 2025-12-08T19:40:01,286 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,286 directory, all directories are treated like packages. 2025-12-08T19:40:01,287 ******************************************************************************** 2025-12-08T19:40:01,288 !! 2025-12-08T19:40:01,288 check.warn(importable) 2025-12-08T19:40:01,288 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_sali2dotbracket.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,289 !! 2025-12-08T19:40:01,289 ******************************************************************************** 2025-12-08T19:40:01,290 ############################ 2025-12-08T19:40:01,290 # Package would be ignored # 2025-12-08T19:40:01,291 ############################ 2025-12-08T19:40:01,291 Python recognizes 'rna_tools.tools.rna_sali2dotbracket.test_data' as an importable package[^1], 2025-12-08T19:40:01,291 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,292 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,293 package, please make sure that 'rna_tools.tools.rna_sali2dotbracket.test_data' is explicitly added 2025-12-08T19:40:01,293 to the `packages` configuration field. 2025-12-08T19:40:01,294 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,295 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,295 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,296 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,297 If you don't want 'rna_tools.tools.rna_sali2dotbracket.test_data' to be distributed and are 2025-12-08T19:40:01,297 already explicitly excluding 'rna_tools.tools.rna_sali2dotbracket.test_data' via 2025-12-08T19:40:01,298 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,298 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,298 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,299 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,300 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,301 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,301 even if it does not contain any `.py` files. 2025-12-08T19:40:01,302 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,302 directory, all directories are treated like packages. 2025-12-08T19:40:01,302 ******************************************************************************** 2025-12-08T19:40:01,303 !! 2025-12-08T19:40:01,303 check.warn(importable) 2025-12-08T19:40:01,304 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_seq_identity' is absent from the `packages` configuration. 2025-12-08T19:40:01,304 !! 2025-12-08T19:40:01,305 ******************************************************************************** 2025-12-08T19:40:01,305 ############################ 2025-12-08T19:40:01,306 # Package would be ignored # 2025-12-08T19:40:01,306 ############################ 2025-12-08T19:40:01,306 Python recognizes 'rna_tools.tools.rna_seq_identity' as an importable package[^1], 2025-12-08T19:40:01,307 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,307 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,308 package, please make sure that 'rna_tools.tools.rna_seq_identity' is explicitly added 2025-12-08T19:40:01,308 to the `packages` configuration field. 2025-12-08T19:40:01,309 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,309 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,310 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,310 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,311 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,312 If you don't want 'rna_tools.tools.rna_seq_identity' to be distributed and are 2025-12-08T19:40:01,312 already explicitly excluding 'rna_tools.tools.rna_seq_identity' via 2025-12-08T19:40:01,313 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,313 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,314 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,314 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,315 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,316 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,317 even if it does not contain any `.py` files. 2025-12-08T19:40:01,317 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,318 directory, all directories are treated like packages. 2025-12-08T19:40:01,318 ******************************************************************************** 2025-12-08T19:40:01,319 !! 2025-12-08T19:40:01,319 check.warn(importable) 2025-12-08T19:40:01,319 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rna_x3dna.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,320 !! 2025-12-08T19:40:01,320 ******************************************************************************** 2025-12-08T19:40:01,321 ############################ 2025-12-08T19:40:01,321 # Package would be ignored # 2025-12-08T19:40:01,322 ############################ 2025-12-08T19:40:01,322 Python recognizes 'rna_tools.tools.rna_x3dna.test_data' as an importable package[^1], 2025-12-08T19:40:01,322 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,323 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,323 package, please make sure that 'rna_tools.tools.rna_x3dna.test_data' is explicitly added 2025-12-08T19:40:01,324 to the `packages` configuration field. 2025-12-08T19:40:01,324 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,325 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,325 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,326 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,327 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,327 If you don't want 'rna_tools.tools.rna_x3dna.test_data' to be distributed and are 2025-12-08T19:40:01,328 already explicitly excluding 'rna_tools.tools.rna_x3dna.test_data' via 2025-12-08T19:40:01,328 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,328 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,329 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,330 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,330 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,331 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,332 even if it does not contain any `.py` files. 2025-12-08T19:40:01,332 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,332 directory, all directories are treated like packages. 2025-12-08T19:40:01,333 ******************************************************************************** 2025-12-08T19:40:01,334 !! 2025-12-08T19:40:01,334 check.warn(importable) 2025-12-08T19:40:01,334 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rnapuzzle_sender' is absent from the `packages` configuration. 2025-12-08T19:40:01,335 !! 2025-12-08T19:40:01,336 ******************************************************************************** 2025-12-08T19:40:01,336 ############################ 2025-12-08T19:40:01,336 # Package would be ignored # 2025-12-08T19:40:01,337 ############################ 2025-12-08T19:40:01,337 Python recognizes 'rna_tools.tools.rnapuzzle_sender' as an importable package[^1], 2025-12-08T19:40:01,337 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,338 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,338 package, please make sure that 'rna_tools.tools.rnapuzzle_sender' is explicitly added 2025-12-08T19:40:01,339 to the `packages` configuration field. 2025-12-08T19:40:01,340 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,340 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,340 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,341 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,342 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,343 If you don't want 'rna_tools.tools.rnapuzzle_sender' to be distributed and are 2025-12-08T19:40:01,343 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender' via 2025-12-08T19:40:01,344 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,344 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,345 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,345 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,346 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,347 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,348 even if it does not contain any `.py` files. 2025-12-08T19:40:01,348 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,348 directory, all directories are treated like packages. 2025-12-08T19:40:01,349 ******************************************************************************** 2025-12-08T19:40:01,350 !! 2025-12-08T19:40:01,350 check.warn(importable) 2025-12-08T19:40:01,350 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.files' is absent from the `packages` configuration. 2025-12-08T19:40:01,351 !! 2025-12-08T19:40:01,351 ******************************************************************************** 2025-12-08T19:40:01,352 ############################ 2025-12-08T19:40:01,352 # Package would be ignored # 2025-12-08T19:40:01,353 ############################ 2025-12-08T19:40:01,353 Python recognizes 'rna_tools.tools.rnapuzzle_sender.files' as an importable package[^1], 2025-12-08T19:40:01,353 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,354 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,354 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.files' is explicitly added 2025-12-08T19:40:01,355 to the `packages` configuration field. 2025-12-08T19:40:01,356 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,356 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,357 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,358 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,359 If you don't want 'rna_tools.tools.rnapuzzle_sender.files' to be distributed and are 2025-12-08T19:40:01,359 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.files' via 2025-12-08T19:40:01,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,360 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,360 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,361 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,362 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,363 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,363 even if it does not contain any `.py` files. 2025-12-08T19:40:01,364 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,364 directory, all directories are treated like packages. 2025-12-08T19:40:01,364 ******************************************************************************** 2025-12-08T19:40:01,365 !! 2025-12-08T19:40:01,366 check.warn(importable) 2025-12-08T19:40:01,366 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is absent from the `packages` configuration. 2025-12-08T19:40:01,366 !! 2025-12-08T19:40:01,367 ******************************************************************************** 2025-12-08T19:40:01,368 ############################ 2025-12-08T19:40:01,368 # Package would be ignored # 2025-12-08T19:40:01,368 ############################ 2025-12-08T19:40:01,369 Python recognizes 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' as an importable package[^1], 2025-12-08T19:40:01,369 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,370 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,370 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is explicitly added 2025-12-08T19:40:01,371 to the `packages` configuration field. 2025-12-08T19:40:01,372 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,372 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,372 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,373 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,374 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,375 If you don't want 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' to be distributed and are 2025-12-08T19:40:01,375 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' via 2025-12-08T19:40:01,375 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,376 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,376 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,377 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,378 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,379 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,379 even if it does not contain any `.py` files. 2025-12-08T19:40:01,380 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,380 directory, all directories are treated like packages. 2025-12-08T19:40:01,380 ******************************************************************************** 2025-12-08T19:40:01,381 !! 2025-12-08T19:40:01,381 check.warn(importable) 2025-12-08T19:40:01,382 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rnashape2ascii' is absent from the `packages` configuration. 2025-12-08T19:40:01,382 !! 2025-12-08T19:40:01,383 ******************************************************************************** 2025-12-08T19:40:01,383 ############################ 2025-12-08T19:40:01,384 # Package would be ignored # 2025-12-08T19:40:01,384 ############################ 2025-12-08T19:40:01,384 Python recognizes 'rna_tools.tools.rnashape2ascii' as an importable package[^1], 2025-12-08T19:40:01,385 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,386 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,386 package, please make sure that 'rna_tools.tools.rnashape2ascii' is explicitly added 2025-12-08T19:40:01,386 to the `packages` configuration field. 2025-12-08T19:40:01,387 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,387 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,388 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,388 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,389 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,390 If you don't want 'rna_tools.tools.rnashape2ascii' to be distributed and are 2025-12-08T19:40:01,390 already explicitly excluding 'rna_tools.tools.rnashape2ascii' via 2025-12-08T19:40:01,391 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,391 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,391 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,392 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,393 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,394 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,394 even if it does not contain any `.py` files. 2025-12-08T19:40:01,395 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,395 directory, all directories are treated like packages. 2025-12-08T19:40:01,396 ******************************************************************************** 2025-12-08T19:40:01,396 !! 2025-12-08T19:40:01,397 check.warn(importable) 2025-12-08T19:40:01,397 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.rnashape2ascii.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,397 !! 2025-12-08T19:40:01,398 ******************************************************************************** 2025-12-08T19:40:01,398 ############################ 2025-12-08T19:40:01,399 # Package would be ignored # 2025-12-08T19:40:01,399 ############################ 2025-12-08T19:40:01,400 Python recognizes 'rna_tools.tools.rnashape2ascii.test_data' as an importable package[^1], 2025-12-08T19:40:01,400 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,401 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,401 package, please make sure that 'rna_tools.tools.rnashape2ascii.test_data' is explicitly added 2025-12-08T19:40:01,402 to the `packages` configuration field. 2025-12-08T19:40:01,402 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,403 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,403 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,404 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,405 If you don't want 'rna_tools.tools.rnashape2ascii.test_data' to be distributed and are 2025-12-08T19:40:01,406 already explicitly excluding 'rna_tools.tools.rnashape2ascii.test_data' via 2025-12-08T19:40:01,406 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,407 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,408 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,409 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,410 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,410 even if it does not contain any `.py` files. 2025-12-08T19:40:01,411 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,411 directory, all directories are treated like packages. 2025-12-08T19:40:01,411 ******************************************************************************** 2025-12-08T19:40:01,412 !! 2025-12-08T19:40:01,412 check.warn(importable) 2025-12-08T19:40:01,413 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.sandbox.rna_compare' is absent from the `packages` configuration. 2025-12-08T19:40:01,413 !! 2025-12-08T19:40:01,414 ******************************************************************************** 2025-12-08T19:40:01,414 ############################ 2025-12-08T19:40:01,415 # Package would be ignored # 2025-12-08T19:40:01,415 ############################ 2025-12-08T19:40:01,415 Python recognizes 'rna_tools.tools.sandbox.rna_compare' as an importable package[^1], 2025-12-08T19:40:01,416 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,416 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,417 package, please make sure that 'rna_tools.tools.sandbox.rna_compare' is explicitly added 2025-12-08T19:40:01,417 to the `packages` configuration field. 2025-12-08T19:40:01,418 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,419 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,419 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,420 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,421 If you don't want 'rna_tools.tools.sandbox.rna_compare' to be distributed and are 2025-12-08T19:40:01,421 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare' via 2025-12-08T19:40:01,422 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,422 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,422 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,423 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,424 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,425 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,425 even if it does not contain any `.py` files. 2025-12-08T19:40:01,426 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,426 directory, all directories are treated like packages. 2025-12-08T19:40:01,426 ******************************************************************************** 2025-12-08T19:40:01,427 !! 2025-12-08T19:40:01,428 check.warn(importable) 2025-12-08T19:40:01,428 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.sandbox.rna_compare.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,428 !! 2025-12-08T19:40:01,429 ******************************************************************************** 2025-12-08T19:40:01,429 ############################ 2025-12-08T19:40:01,430 # Package would be ignored # 2025-12-08T19:40:01,430 ############################ 2025-12-08T19:40:01,431 Python recognizes 'rna_tools.tools.sandbox.rna_compare.test_data' as an importable package[^1], 2025-12-08T19:40:01,431 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,432 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,432 package, please make sure that 'rna_tools.tools.sandbox.rna_compare.test_data' is explicitly added 2025-12-08T19:40:01,433 to the `packages` configuration field. 2025-12-08T19:40:01,433 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,434 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,434 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,435 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,435 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,436 If you don't want 'rna_tools.tools.sandbox.rna_compare.test_data' to be distributed and are 2025-12-08T19:40:01,437 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare.test_data' via 2025-12-08T19:40:01,437 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,437 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,438 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,438 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,440 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,440 even if it does not contain any `.py` files. 2025-12-08T19:40:01,441 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,441 directory, all directories are treated like packages. 2025-12-08T19:40:01,442 ******************************************************************************** 2025-12-08T19:40:01,442 !! 2025-12-08T19:40:01,443 check.warn(importable) 2025-12-08T19:40:01,443 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.simrna_trajectory.test_data' is absent from the `packages` configuration. 2025-12-08T19:40:01,444 !! 2025-12-08T19:40:01,444 ******************************************************************************** 2025-12-08T19:40:01,445 ############################ 2025-12-08T19:40:01,445 # Package would be ignored # 2025-12-08T19:40:01,446 ############################ 2025-12-08T19:40:01,446 Python recognizes 'rna_tools.tools.simrna_trajectory.test_data' as an importable package[^1], 2025-12-08T19:40:01,446 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,447 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,447 package, please make sure that 'rna_tools.tools.simrna_trajectory.test_data' is explicitly added 2025-12-08T19:40:01,448 to the `packages` configuration field. 2025-12-08T19:40:01,448 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,449 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,450 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,451 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,451 If you don't want 'rna_tools.tools.simrna_trajectory.test_data' to be distributed and are 2025-12-08T19:40:01,452 already explicitly excluding 'rna_tools.tools.simrna_trajectory.test_data' via 2025-12-08T19:40:01,452 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,452 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,453 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,453 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,454 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,455 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,456 even if it does not contain any `.py` files. 2025-12-08T19:40:01,456 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,456 directory, all directories are treated like packages. 2025-12-08T19:40:01,457 ******************************************************************************** 2025-12-08T19:40:01,457 !! 2025-12-08T19:40:01,458 check.warn(importable) 2025-12-08T19:40:01,458 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.triplexibility' is absent from the `packages` configuration. 2025-12-08T19:40:01,459 !! 2025-12-08T19:40:01,459 ******************************************************************************** 2025-12-08T19:40:01,460 ############################ 2025-12-08T19:40:01,460 # Package would be ignored # 2025-12-08T19:40:01,461 ############################ 2025-12-08T19:40:01,461 Python recognizes 'rna_tools.tools.triplexibility' as an importable package[^1], 2025-12-08T19:40:01,461 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,462 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,463 package, please make sure that 'rna_tools.tools.triplexibility' is explicitly added 2025-12-08T19:40:01,463 to the `packages` configuration field. 2025-12-08T19:40:01,464 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,464 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,465 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,465 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,466 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,467 If you don't want 'rna_tools.tools.triplexibility' to be distributed and are 2025-12-08T19:40:01,467 already explicitly excluding 'rna_tools.tools.triplexibility' via 2025-12-08T19:40:01,468 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,468 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,468 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,469 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,471 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,471 even if it does not contain any `.py` files. 2025-12-08T19:40:01,472 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,472 directory, all directories are treated like packages. 2025-12-08T19:40:01,472 ******************************************************************************** 2025-12-08T19:40:01,473 !! 2025-12-08T19:40:01,473 check.warn(importable) 2025-12-08T19:40:01,474 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.triplexibility.data' is absent from the `packages` configuration. 2025-12-08T19:40:01,474 !! 2025-12-08T19:40:01,475 ******************************************************************************** 2025-12-08T19:40:01,475 ############################ 2025-12-08T19:40:01,476 # Package would be ignored # 2025-12-08T19:40:01,476 ############################ 2025-12-08T19:40:01,476 Python recognizes 'rna_tools.tools.triplexibility.data' as an importable package[^1], 2025-12-08T19:40:01,477 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,477 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,478 package, please make sure that 'rna_tools.tools.triplexibility.data' is explicitly added 2025-12-08T19:40:01,478 to the `packages` configuration field. 2025-12-08T19:40:01,479 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,480 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,480 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,481 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,482 If you don't want 'rna_tools.tools.triplexibility.data' to be distributed and are 2025-12-08T19:40:01,482 already explicitly excluding 'rna_tools.tools.triplexibility.data' via 2025-12-08T19:40:01,483 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,483 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,483 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,484 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,485 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,486 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,486 even if it does not contain any `.py` files. 2025-12-08T19:40:01,487 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,487 directory, all directories are treated like packages. 2025-12-08T19:40:01,487 ******************************************************************************** 2025-12-08T19:40:01,488 !! 2025-12-08T19:40:01,489 check.warn(importable) 2025-12-08T19:40:01,489 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.triplexibility.db' is absent from the `packages` configuration. 2025-12-08T19:40:01,489 !! 2025-12-08T19:40:01,490 ******************************************************************************** 2025-12-08T19:40:01,491 ############################ 2025-12-08T19:40:01,491 # Package would be ignored # 2025-12-08T19:40:01,491 ############################ 2025-12-08T19:40:01,492 Python recognizes 'rna_tools.tools.triplexibility.db' as an importable package[^1], 2025-12-08T19:40:01,492 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,493 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,493 package, please make sure that 'rna_tools.tools.triplexibility.db' is explicitly added 2025-12-08T19:40:01,494 to the `packages` configuration field. 2025-12-08T19:40:01,494 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,495 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,496 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,497 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,497 If you don't want 'rna_tools.tools.triplexibility.db' to be distributed and are 2025-12-08T19:40:01,498 already explicitly excluding 'rna_tools.tools.triplexibility.db' via 2025-12-08T19:40:01,498 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,498 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,499 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,500 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,500 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,501 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,502 even if it does not contain any `.py` files. 2025-12-08T19:40:01,502 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,502 directory, all directories are treated like packages. 2025-12-08T19:40:01,503 ******************************************************************************** 2025-12-08T19:40:01,503 !! 2025-12-08T19:40:01,504 check.warn(importable) 2025-12-08T19:40:01,504 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.admin.css' is absent from the `packages` configuration. 2025-12-08T19:40:01,505 !! 2025-12-08T19:40:01,505 ******************************************************************************** 2025-12-08T19:40:01,506 ############################ 2025-12-08T19:40:01,506 # Package would be ignored # 2025-12-08T19:40:01,506 ############################ 2025-12-08T19:40:01,507 Python recognizes 'rna_tools.tools.webserver-engine.admin.css' as an importable package[^1], 2025-12-08T19:40:01,507 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,508 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,508 package, please make sure that 'rna_tools.tools.webserver-engine.admin.css' is explicitly added 2025-12-08T19:40:01,509 to the `packages` configuration field. 2025-12-08T19:40:01,509 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,510 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,510 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,511 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,512 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,512 If you don't want 'rna_tools.tools.webserver-engine.admin.css' to be distributed and are 2025-12-08T19:40:01,513 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.css' via 2025-12-08T19:40:01,513 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,513 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,514 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,514 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,515 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,516 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,517 even if it does not contain any `.py` files. 2025-12-08T19:40:01,517 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,518 directory, all directories are treated like packages. 2025-12-08T19:40:01,518 ******************************************************************************** 2025-12-08T19:40:01,519 !! 2025-12-08T19:40:01,519 check.warn(importable) 2025-12-08T19:40:01,520 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img' is absent from the `packages` configuration. 2025-12-08T19:40:01,520 !! 2025-12-08T19:40:01,521 ******************************************************************************** 2025-12-08T19:40:01,521 ############################ 2025-12-08T19:40:01,521 # Package would be ignored # 2025-12-08T19:40:01,522 ############################ 2025-12-08T19:40:01,522 Python recognizes 'rna_tools.tools.webserver-engine.admin.img' as an importable package[^1], 2025-12-08T19:40:01,522 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,523 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,524 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img' is explicitly added 2025-12-08T19:40:01,524 to the `packages` configuration field. 2025-12-08T19:40:01,525 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,525 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,525 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,526 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,527 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,528 If you don't want 'rna_tools.tools.webserver-engine.admin.img' to be distributed and are 2025-12-08T19:40:01,528 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img' via 2025-12-08T19:40:01,528 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,529 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,529 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,530 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,530 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,531 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,532 even if it does not contain any `.py` files. 2025-12-08T19:40:01,532 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,533 directory, all directories are treated like packages. 2025-12-08T19:40:01,533 ******************************************************************************** 2025-12-08T19:40:01,534 !! 2025-12-08T19:40:01,534 check.warn(importable) 2025-12-08T19:40:01,534 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img.gis' is absent from the `packages` configuration. 2025-12-08T19:40:01,535 !! 2025-12-08T19:40:01,536 ******************************************************************************** 2025-12-08T19:40:01,536 ############################ 2025-12-08T19:40:01,536 # Package would be ignored # 2025-12-08T19:40:01,537 ############################ 2025-12-08T19:40:01,537 Python recognizes 'rna_tools.tools.webserver-engine.admin.img.gis' as an importable package[^1], 2025-12-08T19:40:01,537 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,538 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,539 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img.gis' is explicitly added 2025-12-08T19:40:01,539 to the `packages` configuration field. 2025-12-08T19:40:01,540 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,540 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,540 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,541 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,542 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,542 If you don't want 'rna_tools.tools.webserver-engine.admin.img.gis' to be distributed and are 2025-12-08T19:40:01,543 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img.gis' via 2025-12-08T19:40:01,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,544 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,544 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,545 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,546 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,547 even if it does not contain any `.py` files. 2025-12-08T19:40:01,548 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,548 directory, all directories are treated like packages. 2025-12-08T19:40:01,549 ******************************************************************************** 2025-12-08T19:40:01,549 !! 2025-12-08T19:40:01,550 check.warn(importable) 2025-12-08T19:40:01,551 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js' is absent from the `packages` configuration. 2025-12-08T19:40:01,551 !! 2025-12-08T19:40:01,552 ******************************************************************************** 2025-12-08T19:40:01,552 ############################ 2025-12-08T19:40:01,553 # Package would be ignored # 2025-12-08T19:40:01,553 ############################ 2025-12-08T19:40:01,553 Python recognizes 'rna_tools.tools.webserver-engine.admin.js' as an importable package[^1], 2025-12-08T19:40:01,554 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,554 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,555 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js' is explicitly added 2025-12-08T19:40:01,555 to the `packages` configuration field. 2025-12-08T19:40:01,556 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,557 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,557 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,558 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,559 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,560 If you don't want 'rna_tools.tools.webserver-engine.admin.js' to be distributed and are 2025-12-08T19:40:01,560 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js' via 2025-12-08T19:40:01,561 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,561 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,562 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,563 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,564 even if it does not contain any `.py` files. 2025-12-08T19:40:01,565 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,565 directory, all directories are treated like packages. 2025-12-08T19:40:01,566 ******************************************************************************** 2025-12-08T19:40:01,566 !! 2025-12-08T19:40:01,567 check.warn(importable) 2025-12-08T19:40:01,567 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js.admin' is absent from the `packages` configuration. 2025-12-08T19:40:01,567 !! 2025-12-08T19:40:01,568 ******************************************************************************** 2025-12-08T19:40:01,569 ############################ 2025-12-08T19:40:01,569 # Package would be ignored # 2025-12-08T19:40:01,569 ############################ 2025-12-08T19:40:01,570 Python recognizes 'rna_tools.tools.webserver-engine.admin.js.admin' as an importable package[^1], 2025-12-08T19:40:01,570 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,571 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,571 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js.admin' is explicitly added 2025-12-08T19:40:01,572 to the `packages` configuration field. 2025-12-08T19:40:01,572 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,573 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,574 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,575 If you don't want 'rna_tools.tools.webserver-engine.admin.js.admin' to be distributed and are 2025-12-08T19:40:01,576 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js.admin' via 2025-12-08T19:40:01,576 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,577 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,577 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,578 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,579 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,580 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,580 even if it does not contain any `.py` files. 2025-12-08T19:40:01,580 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,581 directory, all directories are treated like packages. 2025-12-08T19:40:01,581 ******************************************************************************** 2025-12-08T19:40:01,582 !! 2025-12-08T19:40:01,582 check.warn(importable) 2025-12-08T19:40:01,583 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app' is absent from the `packages` configuration. 2025-12-08T19:40:01,583 !! 2025-12-08T19:40:01,584 ******************************************************************************** 2025-12-08T19:40:01,584 ############################ 2025-12-08T19:40:01,585 # Package would be ignored # 2025-12-08T19:40:01,585 ############################ 2025-12-08T19:40:01,585 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app' as an importable package[^1], 2025-12-08T19:40:01,586 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,587 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,587 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app' is explicitly added 2025-12-08T19:40:01,587 to the `packages` configuration field. 2025-12-08T19:40:01,588 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,589 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,590 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,590 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,591 If you don't want 'rna_tools.tools.webserver-engine.app.static.app' to be distributed and are 2025-12-08T19:40:01,592 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app' via 2025-12-08T19:40:01,592 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,593 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,593 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,594 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,595 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,597 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,597 even if it does not contain any `.py` files. 2025-12-08T19:40:01,598 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,598 directory, all directories are treated like packages. 2025-12-08T19:40:01,599 ******************************************************************************** 2025-12-08T19:40:01,600 !! 2025-12-08T19:40:01,600 check.warn(importable) 2025-12-08T19:40:01,600 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is absent from the `packages` configuration. 2025-12-08T19:40:01,601 !! 2025-12-08T19:40:01,602 ******************************************************************************** 2025-12-08T19:40:01,602 ############################ 2025-12-08T19:40:01,603 # Package would be ignored # 2025-12-08T19:40:01,603 ############################ 2025-12-08T19:40:01,604 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' as an importable package[^1], 2025-12-08T19:40:01,604 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,605 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,606 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is explicitly added 2025-12-08T19:40:01,606 to the `packages` configuration field. 2025-12-08T19:40:01,607 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,608 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,608 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,609 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,610 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' to be distributed and are 2025-12-08T19:40:01,611 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' via 2025-12-08T19:40:01,611 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,612 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,612 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,613 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,614 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,615 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,615 even if it does not contain any `.py` files. 2025-12-08T19:40:01,616 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,616 directory, all directories are treated like packages. 2025-12-08T19:40:01,616 ******************************************************************************** 2025-12-08T19:40:01,617 !! 2025-12-08T19:40:01,618 check.warn(importable) 2025-12-08T19:40:01,618 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is absent from the `packages` configuration. 2025-12-08T19:40:01,619 !! 2025-12-08T19:40:01,620 ******************************************************************************** 2025-12-08T19:40:01,620 ############################ 2025-12-08T19:40:01,621 # Package would be ignored # 2025-12-08T19:40:01,621 ############################ 2025-12-08T19:40:01,621 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' as an importable package[^1], 2025-12-08T19:40:01,622 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,622 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,623 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is explicitly added 2025-12-08T19:40:01,623 to the `packages` configuration field. 2025-12-08T19:40:01,624 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,624 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,625 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,626 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,627 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,628 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' to be distributed and are 2025-12-08T19:40:01,628 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' via 2025-12-08T19:40:01,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,629 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,629 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,630 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,631 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,632 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,632 even if it does not contain any `.py` files. 2025-12-08T19:40:01,632 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,633 directory, all directories are treated like packages. 2025-12-08T19:40:01,633 ******************************************************************************** 2025-12-08T19:40:01,634 !! 2025-12-08T19:40:01,634 check.warn(importable) 2025-12-08T19:40:01,635 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is absent from the `packages` configuration. 2025-12-08T19:40:01,636 !! 2025-12-08T19:40:01,636 ******************************************************************************** 2025-12-08T19:40:01,637 ############################ 2025-12-08T19:40:01,637 # Package would be ignored # 2025-12-08T19:40:01,638 ############################ 2025-12-08T19:40:01,639 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' as an importable package[^1], 2025-12-08T19:40:01,639 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,640 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,640 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is explicitly added 2025-12-08T19:40:01,641 to the `packages` configuration field. 2025-12-08T19:40:01,642 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,642 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,642 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,643 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,644 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,645 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' to be distributed and are 2025-12-08T19:40:01,646 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' via 2025-12-08T19:40:01,646 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,647 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,647 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,648 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,649 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,650 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,650 even if it does not contain any `.py` files. 2025-12-08T19:40:01,651 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,651 directory, all directories are treated like packages. 2025-12-08T19:40:01,652 ******************************************************************************** 2025-12-08T19:40:01,652 !! 2025-12-08T19:40:01,653 check.warn(importable) 2025-12-08T19:40:01,653 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.demo' is absent from the `packages` configuration. 2025-12-08T19:40:01,654 !! 2025-12-08T19:40:01,654 ******************************************************************************** 2025-12-08T19:40:01,655 ############################ 2025-12-08T19:40:01,655 # Package would be ignored # 2025-12-08T19:40:01,656 ############################ 2025-12-08T19:40:01,656 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.demo' as an importable package[^1], 2025-12-08T19:40:01,657 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,658 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,658 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.demo' is explicitly added 2025-12-08T19:40:01,659 to the `packages` configuration field. 2025-12-08T19:40:01,660 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,660 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,660 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,662 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,662 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,663 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.demo' to be distributed and are 2025-12-08T19:40:01,664 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.demo' via 2025-12-08T19:40:01,664 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,665 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,665 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,666 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,667 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,668 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,668 even if it does not contain any `.py` files. 2025-12-08T19:40:01,669 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,669 directory, all directories are treated like packages. 2025-12-08T19:40:01,669 ******************************************************************************** 2025-12-08T19:40:01,670 !! 2025-12-08T19:40:01,670 check.warn(importable) 2025-12-08T19:40:01,671 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is absent from the `packages` configuration. 2025-12-08T19:40:01,671 !! 2025-12-08T19:40:01,672 ******************************************************************************** 2025-12-08T19:40:01,673 ############################ 2025-12-08T19:40:01,673 # Package would be ignored # 2025-12-08T19:40:01,674 ############################ 2025-12-08T19:40:01,674 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.dropzone' as an importable package[^1], 2025-12-08T19:40:01,675 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,676 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,676 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is explicitly added 2025-12-08T19:40:01,676 to the `packages` configuration field. 2025-12-08T19:40:01,677 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,678 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,678 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,679 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,680 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,681 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.dropzone' to be distributed and are 2025-12-08T19:40:01,681 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.dropzone' via 2025-12-08T19:40:01,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,683 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,684 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,686 even if it does not contain any `.py` files. 2025-12-08T19:40:01,687 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,687 directory, all directories are treated like packages. 2025-12-08T19:40:01,688 ******************************************************************************** 2025-12-08T19:40:01,688 !! 2025-12-08T19:40:01,689 check.warn(importable) 2025-12-08T19:40:01,689 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.help' is absent from the `packages` configuration. 2025-12-08T19:40:01,690 !! 2025-12-08T19:40:01,690 ******************************************************************************** 2025-12-08T19:40:01,691 ############################ 2025-12-08T19:40:01,691 # Package would be ignored # 2025-12-08T19:40:01,692 ############################ 2025-12-08T19:40:01,692 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.help' as an importable package[^1], 2025-12-08T19:40:01,693 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,693 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,694 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.help' is explicitly added 2025-12-08T19:40:01,695 to the `packages` configuration field. 2025-12-08T19:40:01,696 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,697 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,698 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,699 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.help' to be distributed and are 2025-12-08T19:40:01,700 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.help' via 2025-12-08T19:40:01,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,701 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,702 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,702 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,704 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,704 even if it does not contain any `.py` files. 2025-12-08T19:40:01,704 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,705 directory, all directories are treated like packages. 2025-12-08T19:40:01,706 ******************************************************************************** 2025-12-08T19:40:01,706 !! 2025-12-08T19:40:01,707 check.warn(importable) 2025-12-08T19:40:01,707 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.img' is absent from the `packages` configuration. 2025-12-08T19:40:01,708 !! 2025-12-08T19:40:01,708 ******************************************************************************** 2025-12-08T19:40:01,709 ############################ 2025-12-08T19:40:01,709 # Package would be ignored # 2025-12-08T19:40:01,709 ############################ 2025-12-08T19:40:01,710 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.img' as an importable package[^1], 2025-12-08T19:40:01,710 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,711 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,711 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.img' is explicitly added 2025-12-08T19:40:01,712 to the `packages` configuration field. 2025-12-08T19:40:01,712 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,713 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,713 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,714 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,715 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,715 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.img' to be distributed and are 2025-12-08T19:40:01,716 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.img' via 2025-12-08T19:40:01,716 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,717 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,717 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,718 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,719 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,720 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,720 even if it does not contain any `.py` files. 2025-12-08T19:40:01,720 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,721 directory, all directories are treated like packages. 2025-12-08T19:40:01,722 ******************************************************************************** 2025-12-08T19:40:01,723 !! 2025-12-08T19:40:01,723 check.warn(importable) 2025-12-08T19:40:01,723 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates' is absent from the `packages` configuration. 2025-12-08T19:40:01,724 !! 2025-12-08T19:40:01,725 ******************************************************************************** 2025-12-08T19:40:01,725 ############################ 2025-12-08T19:40:01,726 # Package would be ignored # 2025-12-08T19:40:01,726 ############################ 2025-12-08T19:40:01,727 Python recognizes 'rna_tools.tools.webserver-engine.app.templates' as an importable package[^1], 2025-12-08T19:40:01,727 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,728 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,729 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates' is explicitly added 2025-12-08T19:40:01,729 to the `packages` configuration field. 2025-12-08T19:40:01,730 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,731 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,731 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,732 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,733 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,734 If you don't want 'rna_tools.tools.webserver-engine.app.templates' to be distributed and are 2025-12-08T19:40:01,735 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates' via 2025-12-08T19:40:01,735 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,736 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,736 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,737 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,738 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,740 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,740 even if it does not contain any `.py` files. 2025-12-08T19:40:01,741 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,741 directory, all directories are treated like packages. 2025-12-08T19:40:01,741 ******************************************************************************** 2025-12-08T19:40:01,742 !! 2025-12-08T19:40:01,743 check.warn(importable) 2025-12-08T19:40:01,743 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates.archive' is absent from the `packages` configuration. 2025-12-08T19:40:01,744 !! 2025-12-08T19:40:01,745 ******************************************************************************** 2025-12-08T19:40:01,745 ############################ 2025-12-08T19:40:01,746 # Package would be ignored # 2025-12-08T19:40:01,746 ############################ 2025-12-08T19:40:01,747 Python recognizes 'rna_tools.tools.webserver-engine.app.templates.archive' as an importable package[^1], 2025-12-08T19:40:01,747 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,748 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,749 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates.archive' is explicitly added 2025-12-08T19:40:01,749 to the `packages` configuration field. 2025-12-08T19:40:01,750 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,751 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,751 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,752 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,754 If you don't want 'rna_tools.tools.webserver-engine.app.templates.archive' to be distributed and are 2025-12-08T19:40:01,754 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates.archive' via 2025-12-08T19:40:01,755 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,756 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,756 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,757 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,760 even if it does not contain any `.py` files. 2025-12-08T19:40:01,760 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,761 directory, all directories are treated like packages. 2025-12-08T19:40:01,761 ******************************************************************************** 2025-12-08T19:40:01,762 !! 2025-12-08T19:40:01,762 check.warn(importable) 2025-12-08T19:40:01,763 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.css' is absent from the `packages` configuration. 2025-12-08T19:40:01,763 !! 2025-12-08T19:40:01,764 ******************************************************************************** 2025-12-08T19:40:01,765 ############################ 2025-12-08T19:40:01,765 # Package would be ignored # 2025-12-08T19:40:01,765 ############################ 2025-12-08T19:40:01,766 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.css' as an importable package[^1], 2025-12-08T19:40:01,766 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,767 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,767 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.css' is explicitly added 2025-12-08T19:40:01,768 to the `packages` configuration field. 2025-12-08T19:40:01,769 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,769 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,769 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,770 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,771 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,772 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.css' to be distributed and are 2025-12-08T19:40:01,772 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.css' via 2025-12-08T19:40:01,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,773 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,773 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,774 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,776 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,776 even if it does not contain any `.py` files. 2025-12-08T19:40:01,777 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,777 directory, all directories are treated like packages. 2025-12-08T19:40:01,778 ******************************************************************************** 2025-12-08T19:40:01,778 !! 2025-12-08T19:40:01,779 check.warn(importable) 2025-12-08T19:40:01,779 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.img' is absent from the `packages` configuration. 2025-12-08T19:40:01,779 !! 2025-12-08T19:40:01,780 ******************************************************************************** 2025-12-08T19:40:01,781 ############################ 2025-12-08T19:40:01,781 # Package would be ignored # 2025-12-08T19:40:01,781 ############################ 2025-12-08T19:40:01,782 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.img' as an importable package[^1], 2025-12-08T19:40:01,782 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,783 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,783 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.img' is explicitly added 2025-12-08T19:40:01,784 to the `packages` configuration field. 2025-12-08T19:40:01,784 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,785 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,786 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,787 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,787 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.img' to be distributed and are 2025-12-08T19:40:01,788 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.img' via 2025-12-08T19:40:01,788 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,789 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,789 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,790 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,790 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,791 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,792 even if it does not contain any `.py` files. 2025-12-08T19:40:01,792 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,793 directory, all directories are treated like packages. 2025-12-08T19:40:01,793 ******************************************************************************** 2025-12-08T19:40:01,794 !! 2025-12-08T19:40:01,794 check.warn(importable) 2025-12-08T19:40:01,795 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.js' is absent from the `packages` configuration. 2025-12-08T19:40:01,795 !! 2025-12-08T19:40:01,796 ******************************************************************************** 2025-12-08T19:40:01,796 ############################ 2025-12-08T19:40:01,797 # Package would be ignored # 2025-12-08T19:40:01,797 ############################ 2025-12-08T19:40:01,797 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.js' as an importable package[^1], 2025-12-08T19:40:01,798 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,799 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,799 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.js' is explicitly added 2025-12-08T19:40:01,799 to the `packages` configuration field. 2025-12-08T19:40:01,800 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,800 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,801 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,802 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,802 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,803 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.js' to be distributed and are 2025-12-08T19:40:01,803 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.js' via 2025-12-08T19:40:01,804 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,804 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,805 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,805 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,806 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,807 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,808 even if it does not contain any `.py` files. 2025-12-08T19:40:01,808 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,808 directory, all directories are treated like packages. 2025-12-08T19:40:01,809 ******************************************************************************** 2025-12-08T19:40:01,810 !! 2025-12-08T19:40:01,810 check.warn(importable) 2025-12-08T19:40:01,810 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.webserver-engine.docs' is absent from the `packages` configuration. 2025-12-08T19:40:01,811 !! 2025-12-08T19:40:01,811 ******************************************************************************** 2025-12-08T19:40:01,812 ############################ 2025-12-08T19:40:01,812 # Package would be ignored # 2025-12-08T19:40:01,813 ############################ 2025-12-08T19:40:01,813 Python recognizes 'rna_tools.tools.webserver-engine.docs' as an importable package[^1], 2025-12-08T19:40:01,813 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,814 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,814 package, please make sure that 'rna_tools.tools.webserver-engine.docs' is explicitly added 2025-12-08T19:40:01,815 to the `packages` configuration field. 2025-12-08T19:40:01,816 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,816 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,816 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,817 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,818 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,819 If you don't want 'rna_tools.tools.webserver-engine.docs' to be distributed and are 2025-12-08T19:40:01,819 already explicitly excluding 'rna_tools.tools.webserver-engine.docs' via 2025-12-08T19:40:01,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,820 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,821 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,823 even if it does not contain any `.py` files. 2025-12-08T19:40:01,824 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,824 directory, all directories are treated like packages. 2025-12-08T19:40:01,825 ******************************************************************************** 2025-12-08T19:40:01,826 !! 2025-12-08T19:40:01,826 check.warn(importable) 2025-12-08T19:40:01,827 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'rna_tools.tools.workflow' is absent from the `packages` configuration. 2025-12-08T19:40:01,828 !! 2025-12-08T19:40:01,829 ******************************************************************************** 2025-12-08T19:40:01,829 ############################ 2025-12-08T19:40:01,830 # Package would be ignored # 2025-12-08T19:40:01,830 ############################ 2025-12-08T19:40:01,831 Python recognizes 'rna_tools.tools.workflow' as an importable package[^1], 2025-12-08T19:40:01,831 but it is absent from setuptools' `packages` configuration. 2025-12-08T19:40:01,832 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-08T19:40:01,832 package, please make sure that 'rna_tools.tools.workflow' is explicitly added 2025-12-08T19:40:01,832 to the `packages` configuration field. 2025-12-08T19:40:01,833 Alternatively, you can also rely on setuptools' discovery methods 2025-12-08T19:40:01,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-08T19:40:01,835 instead of `find_packages(...)`/`find:`). 2025-12-08T19:40:01,836 You can read more about "package discovery" on setuptools documentation page: 2025-12-08T19:40:01,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-08T19:40:01,837 If you don't want 'rna_tools.tools.workflow' to be distributed and are 2025-12-08T19:40:01,838 already explicitly excluding 'rna_tools.tools.workflow' via 2025-12-08T19:40:01,838 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-08T19:40:01,839 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-08T19:40:01,839 combination with a more fine grained `package-data` configuration. 2025-12-08T19:40:01,840 You can read more about "package data files" on setuptools documentation page: 2025-12-08T19:40:01,841 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-08T19:40:01,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-08T19:40:01,843 even if it does not contain any `.py` files. 2025-12-08T19:40:01,843 On the other hand, currently there is no concept of package data 2025-12-08T19:40:01,843 directory, all directories are treated like packages. 2025-12-08T19:40:01,844 ******************************************************************************** 2025-12-08T19:40:01,845 !! 2025-12-08T19:40:01,846 check.warn(importable) 2025-12-08T19:40:01,887 Failed to load config from /tmp/pip-wheel-zk2s8ry4/rna-tools_57b5bbd6ae23474aaeb3817e2ee1312b/pyproject.toml: 'tool' 2025-12-08T19:40:01,888 Try to load it from setup.cfg 2025-12-08T19:40:01,888 copying rna_tools/pytest.ini -> build/lib/rna_tools 2025-12-08T19:40:01,891 copying rna_tools/rchie.png -> build/lib/rna_tools 2025-12-08T19:40:01,918 copying rna_tools/shell_rc.sh -> build/lib/rna_tools 2025-12-08T19:40:01,923 copying rna_tools/test.sh -> build/lib/rna_tools 2025-12-08T19:40:01,927 creating build/lib/rna_tools/data 2025-12-08T19:40:01,929 copying rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,938 copying rna_tools/data/A.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,942 copying rna_tools/data/ACGU.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,947 copying rna_tools/data/C.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,951 copying rna_tools/data/G.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,956 copying rna_tools/data/PO3_inner.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,960 copying rna_tools/data/U.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,964 copying rna_tools/data/o2prim.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,968 copying rna_tools/data/op4.pdb -> build/lib/rna_tools/data 2025-12-08T19:40:01,973 copying rna_tools/data/pdb_ids.txt -> build/lib/rna_tools/data 2025-12-08T19:40:01,977 copying rna_tools/data/rna_pdb_errors.csv -> build/lib/rna_tools/data 2025-12-08T19:40:01,981 copying rna_tools/data/shape.txt -> build/lib/rna_tools/data 2025-12-08T19:40:01,985 creating build/lib/rna_tools/tests 2025-12-08T19:40:01,987 copying rna_tools/tests/test_eval.py -> build/lib/rna_tools/tests 2025-12-08T19:40:01,991 copying rna_tools/tests/test_rna_ss_pred.sh -> build/lib/rna_tools/tests 2025-12-08T19:40:01,996 copying rna_tools/tests/test_rnafold.py -> build/lib/rna_tools/tests 2025-12-08T19:40:01,1000 copying rna_tools/tests/test_seq_cyclefold.py -> build/lib/rna_tools/tests 2025-12-08T19:40:02,004 copying rna_tools/tests/test_seq_mcfold.py -> build/lib/rna_tools/tests 2025-12-08T19:40:02,009 copying rna_tools/tests/test_seq_mcfold2.py -> build/lib/rna_tools/tests 2025-12-08T19:40:02,013 creating build/lib/rna_tools/tests/test_import_module 2025-12-08T19:40:02,015 copying rna_tools/tests/test_import_module/rchie.png -> build/lib/rna_tools/tests/test_import_module 2025-12-08T19:40:02,026 copying rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/lib/rna_tools/tests/test_import_module 2025-12-08T19:40:02,030 creating build/lib/rna_tools/tests/test_import_module/test_data 2025-12-08T19:40:02,031 copying rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tests/test_import_module/test_data 2025-12-08T19:40:02,036 creating build/lib/rna_tools/tools/df 2025-12-08T19:40:02,037 copying rna_tools/tools/df/rna_df_concat.py -> build/lib/rna_tools/tools/df 2025-12-08T19:40:02,042 copying rna_tools/tools/df/rna_df_csv_sort.py -> build/lib/rna_tools/tools/df 2025-12-08T19:40:02,046 copying rna_tools/tools/df/rna_df_merge.py -> build/lib/rna_tools/tools/df 2025-12-08T19:40:02,051 copying rna_tools/tools/df/rna_df_merge_on.py -> build/lib/rna_tools/tools/df 2025-12-08T19:40:02,055 copying rna_tools/tools/df/rna_df_merge_two.py -> build/lib/rna_tools/tools/df 2025-12-08T19:40:02,060 copying rna_tools/tools/df/test.sh -> build/lib/rna_tools/tools/df 2025-12-08T19:40:02,064 creating build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,066 copying rna_tools/tools/df/test_data/cga_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,070 copying rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,075 copying rna_tools/tools/df/test_data/d3.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,079 copying rna_tools/tools/df/test_data/d8.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,084 copying rna_tools/tools/df/test_data/min_2.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,089 copying rna_tools/tools/df/test_data/min_3.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,093 copying rna_tools/tools/df/test_data/min_4.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,098 copying rna_tools/tools/df/test_data/rna_df_concat.py -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,103 copying rna_tools/tools/df/test_data/rna_df_merge.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,107 copying rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/lib/rna_tools/tools/df/test_data 2025-12-08T19:40:02,111 creating build/lib/rna_tools/tools/proteins 2025-12-08T19:40:02,113 copying rna_tools/tools/proteins/1djf.pdb -> build/lib/rna_tools/tools/proteins 2025-12-08T19:40:02,120 copying rna_tools/tools/proteins/calc_distances.py -> build/lib/rna_tools/tools/proteins 2025-12-08T19:40:02,124 copying rna_tools/tools/proteins/test.sh -> build/lib/rna_tools/tools/proteins 2025-12-08T19:40:02,128 copying rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/lib/rna_tools/tools/proteins 2025-12-08T19:40:02,133 creating build/lib/rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:02,135 copying rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:02,139 copying rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:02,144 copying rna_tools/tools/pymol_color_by_conserv/readme.md -> build/lib/rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:02,150 copying rna_tools/tools/pymol_color_by_conserv/test.sh -> build/lib/rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:02,154 creating build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:02,157 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:02,163 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:02,168 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:02,172 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:02,177 creating build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:02,179 copying rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:02,185 copying rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:02,328 copying rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:02,349 creating build/lib/rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:02,351 copying rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/lib/rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:02,356 copying rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/lib/rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:02,360 copying rna_tools/tools/pymol_preview_generator/readme.md -> build/lib/rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:02,364 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2025-12-08T19:40:02,368 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2025-12-08T19:40:02,373 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2025-12-08T19:40:02,378 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:02,379 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:02,384 creating build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,387 copying rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,441 copying rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,486 copying rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,523 copying rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,529 copying rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,539 copying rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,562 copying rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:02,584 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2025-12-08T19:40:02,589 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2025-12-08T19:40:02,594 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2025-12-08T19:40:02,600 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:02,602 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:02,606 creating build/lib/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:02,608 copying rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:02,613 copying rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:02,617 copying rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:02,622 copying rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:02,626 copying rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:02,630 copying rna_tools/tools/rna_binding_affinity/test.sh -> build/lib/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:02,634 creating build/lib/rna_tools/tools/rna_calc_gdt 2025-12-08T19:40:02,636 copying rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/lib/rna_tools/tools/rna_calc_gdt 2025-12-08T19:40:02,641 copying rna_tools/tools/rna_calc_gdt/test.sh -> build/lib/rna_tools/tools/rna_calc_gdt 2025-12-08T19:40:02,645 creating build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,647 copying rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,651 copying rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,656 copying rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,660 copying rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,664 copying rna_tools/tools/rna_calc_hbonds/readme.md -> build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,668 copying rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,672 copying rna_tools/tools/rna_calc_hbonds/test.sh -> build/lib/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:02,677 creating build/lib/rna_tools/tools/rna_calc_hbonds/docs 2025-12-08T19:40:02,679 copying rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/lib/rna_tools/tools/rna_calc_hbonds/docs 2025-12-08T19:40:02,692 creating build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,694 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,700 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,705 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,709 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,714 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,719 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,727 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,734 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,738 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,743 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,748 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,753 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:02,757 creating build/lib/rna_tools/tools/rna_get_restraints 2025-12-08T19:40:02,759 copying rna_tools/tools/rna_get_restraints/.gitignore -> build/lib/rna_tools/tools/rna_get_restraints 2025-12-08T19:40:02,764 copying rna_tools/tools/rna_get_restraints/README.md -> build/lib/rna_tools/tools/rna_get_restraints 2025-12-08T19:40:02,768 copying rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2025-12-08T19:40:02,772 copying rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2025-12-08T19:40:02,776 copying rna_tools/tools/rna_get_restraints/test.sh -> build/lib/rna_tools/tools/rna_get_restraints 2025-12-08T19:40:02,780 creating build/lib/rna_tools/tools/rna_multimodels 2025-12-08T19:40:02,782 copying rna_tools/tools/rna_multimodels/check.sh -> build/lib/rna_tools/tools/rna_multimodels 2025-12-08T19:40:02,787 copying rna_tools/tools/rna_multimodels/readme.md -> build/lib/rna_tools/tools/rna_multimodels 2025-12-08T19:40:02,791 copying rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/lib/rna_tools/tools/rna_multimodels 2025-12-08T19:40:02,795 copying rna_tools/tools/rna_multimodels/test_util.py -> build/lib/rna_tools/tools/rna_multimodels 2025-12-08T19:40:02,799 creating build/lib/rna_tools/tools/rna_multimodels/data 2025-12-08T19:40:02,801 copying rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/lib/rna_tools/tools/rna_multimodels/data 2025-12-08T19:40:02,831 copying rna_tools/tools/rna_multimodels/data/seq.fa -> build/lib/rna_tools/tools/rna_multimodels/data 2025-12-08T19:40:02,836 creating build/lib/rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:02,838 copying rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:02,848 copying rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:02,858 copying rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:02,869 creating build/lib/rna_tools/tools/rna_multimodels/test_out 2025-12-08T19:40:02,871 copying rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_out 2025-12-08T19:40:02,895 creating build/lib/rna_tools/tools/rna_rfam 2025-12-08T19:40:02,897 copying rna_tools/tools/rna_rfam/list.txt -> build/lib/rna_tools/tools/rna_rfam 2025-12-08T19:40:02,907 copying rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/lib/rna_tools/tools/rna_rfam 2025-12-08T19:40:02,912 copying rna_tools/tools/rna_rfam/test.sh -> build/lib/rna_tools/tools/rna_rfam 2025-12-08T19:40:02,916 creating build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,918 copying rna_tools/tools/rna_seq_identity/RF03167.cm -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,926 copying rna_tools/tools/rna_seq_identity/output.sto -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,931 copying rna_tools/tools/rna_seq_identity/pairwase.py -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,935 copying rna_tools/tools/rna_seq_identity/readme.md -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,939 copying rna_tools/tools/rna_seq_identity/seq1.fa -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,944 copying rna_tools/tools/rna_seq_identity/seq12.fa -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,948 copying rna_tools/tools/rna_seq_identity/seq2.fa -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,952 copying rna_tools/tools/rna_seq_identity/test.sh -> build/lib/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:02,957 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2025-12-08T19:40:02,959 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2025-12-08T19:40:02,964 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2025-12-08T19:40:02,967 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:02,970 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:02,974 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:02,979 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:02,983 creating build/lib/rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:02,985 copying rna_tools/tools/rnapuzzle_sender/.gitignore -> build/lib/rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:02,989 copying rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/lib/rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:02,993 copying rna_tools/tools/rnapuzzle_sender/test.sh -> build/lib/rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:02,997 creating build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:02,999 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,013 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,026 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,039 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,052 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,063 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,074 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,085 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,097 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,108 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:03,121 creating build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:03,123 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:03,140 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:03,276 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:03,415 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:03,432 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:03,452 creating build/lib/rna_tools/tools/rnashape2ascii 2025-12-08T19:40:03,454 copying rna_tools/tools/rnashape2ascii/LICENSE -> build/lib/rna_tools/tools/rnashape2ascii 2025-12-08T19:40:03,460 copying rna_tools/tools/rnashape2ascii/README.md -> build/lib/rna_tools/tools/rnashape2ascii 2025-12-08T19:40:03,464 copying rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/lib/rna_tools/tools/rnashape2ascii 2025-12-08T19:40:03,468 copying rna_tools/tools/rnashape2ascii/test.sh -> build/lib/rna_tools/tools/rnashape2ascii 2025-12-08T19:40:03,472 creating build/lib/rna_tools/tools/rnashape2ascii/test_data 2025-12-08T19:40:03,474 copying rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2025-12-08T19:40:03,479 copying rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2025-12-08T19:40:03,483 creating build/lib/rna_tools/tools/sandbox/rna_compare 2025-12-08T19:40:03,486 copying rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/lib/rna_tools/tools/sandbox/rna_compare 2025-12-08T19:40:03,491 copying rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/lib/rna_tools/tools/sandbox/rna_compare 2025-12-08T19:40:03,495 creating build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2025-12-08T19:40:03,497 copying rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2025-12-08T19:40:03,509 copying rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2025-12-08T19:40:03,520 creating build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,522 copying rna_tools/tools/triplexibility/.gitignore -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,527 copying rna_tools/tools/triplexibility/download-all-pdbs.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,532 copying rna_tools/tools/triplexibility/download-all-triples.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,538 copying rna_tools/tools/triplexibility/download-all.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,543 copying rna_tools/tools/triplexibility/lib.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,549 copying rna_tools/tools/triplexibility/process_triple.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,553 copying rna_tools/tools/triplexibility/readme.md -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,557 copying rna_tools/tools/triplexibility/splix.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,562 copying rna_tools/tools/triplexibility/test.sh -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,566 copying rna_tools/tools/triplexibility/test_all.sh -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,571 copying rna_tools/tools/triplexibility/triple-db.csv -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,620 copying rna_tools/tools/triplexibility/triplexibility.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,626 copying rna_tools/tools/triplexibility/triplexibility2.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,631 copying rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,636 copying rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,640 copying rna_tools/tools/triplexibility/trx.ipynb -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,645 copying rna_tools/tools/triplexibility/trx.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,650 copying rna_tools/tools/triplexibility/trx_analysis.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,654 copying rna_tools/tools/triplexibility/trx_analysis.txt -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,658 copying rna_tools/tools/triplexibility/trx_mutagen.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,663 copying rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,667 copying rna_tools/tools/triplexibility/trx_score.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,672 copying rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,677 copying rna_tools/tools/triplexibility/trx_score_growth.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,681 copying rna_tools/tools/triplexibility/trx_score_onCol.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,686 copying rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2025-12-08T19:40:03,692 creating build/lib/rna_tools/tools/triplexibility/data 2025-12-08T19:40:03,693 copying rna_tools/tools/triplexibility/data/XcWWX.csv -> build/lib/rna_tools/tools/triplexibility/data 2025-12-08T19:40:03,698 copying rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/lib/rna_tools/tools/triplexibility/data 2025-12-08T19:40:03,702 copying rna_tools/tools/triplexibility/data/db.csv -> build/lib/rna_tools/tools/triplexibility/data 2025-12-08T19:40:03,707 copying rna_tools/tools/triplexibility/data/db_trx2.csv -> build/lib/rna_tools/tools/triplexibility/data 2025-12-08T19:40:03,712 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/lib/rna_tools/tools/triplexibility/data 2025-12-08T19:40:03,717 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/lib/rna_tools/tools/triplexibility/data 2025-12-08T19:40:03,722 creating build/lib/rna_tools/tools/triplexibility/db 2025-12-08T19:40:03,723 copying rna_tools/tools/triplexibility/db/gendb.py -> build/lib/rna_tools/tools/triplexibility/db 2025-12-08T19:40:03,728 creating build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,730 copying rna_tools/tools/workflow/README.md -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,735 copying rna_tools/tools/workflow/after_peyote_clean.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,739 copying rna_tools/tools/workflow/automatix.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,743 copying rna_tools/tools/workflow/chunker.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,748 copying rna_tools/tools/workflow/clean.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,752 copying rna_tools/tools/workflow/evox.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,756 copying rna_tools/tools/workflow/inf_all.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,761 copying rna_tools/tools/workflow/mass_inf.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,765 copying rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,770 copying rna_tools/tools/workflow/mqaprna_run copy.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,787 copying rna_tools/tools/workflow/mqaprna_run.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,806 copying rna_tools/tools/workflow/pdb_list.txt -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,811 copying rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,815 copying rna_tools/tools/workflow/rm_less_2k.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,819 copying rna_tools/tools/workflow/rna_workflow.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,824 copying rna_tools/tools/workflow/rp13_automatix.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,828 copying rna_tools/tools/workflow/run -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,833 copying rna_tools/tools/workflow/run.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,838 copying rna_tools/tools/workflow/run_1 -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,843 copying rna_tools/tools/workflow/test.sh -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,847 copying rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/lib/rna_tools/tools/workflow 2025-12-08T19:40:03,851 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:40:03,855 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:40:03,859 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:03,861 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:03,874 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:03,887 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:03,901 copying rna_tools/tools/simrna_trajectory/.gitignore -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:40:03,906 copying rna_tools/tools/simrna_trajectory/subset.trafl -> build/lib/rna_tools/tools/simrna_trajectory 2025-12-08T19:40:03,944 creating build/lib/rna_tools/tools/simrna_trajectory/test_data 2025-12-08T19:40:03,946 copying rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/lib/rna_tools/tools/simrna_trajectory/test_data 2025-12-08T19:40:03,955 copying rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:40:03,959 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:03,961 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:03,966 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:03,973 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:03,980 copying rna_tools/tools/ClashCalc/.gitignore -> build/lib/rna_tools/tools/ClashCalc 2025-12-08T19:40:03,985 copying rna_tools/tools/ClashCalc/README.md -> build/lib/rna_tools/tools/ClashCalc 2025-12-08T19:40:03,989 creating build/lib/rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:03,991 copying rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:04,044 copying rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:04,086 copying rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:04,121 copying rna_tools/tools/cluster_load/README.md -> build/lib/rna_tools/tools/cluster_load 2025-12-08T19:40:04,126 copying rna_tools/tools/cluster_load/load -> build/lib/rna_tools/tools/cluster_load 2025-12-08T19:40:04,129 copying rna_tools/tools/rna_filter/.gitignore -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:40:04,134 copying rna_tools/tools/rna_filter/README.md -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:40:04,138 copying rna_tools/tools/rna_filter/test.sh -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:40:04,143 copying rna_tools/tools/rna_filter/test_dca.sh -> build/lib/rna_tools/tools/rna_filter 2025-12-08T19:40:04,147 creating build/lib/rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:04,149 copying rna_tools/tools/rna_filter/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:04,153 copying rna_tools/tools/rna_filter/test_data/CG.trafl -> build/lib/rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:04,158 copying rna_tools/tools/rna_filter/test_data/restraints.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:04,162 copying rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:04,167 copying rna_tools/tools/clanstix/.gitignore -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:40:04,171 copying rna_tools/tools/clanstix/LICENSE -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:40:04,178 copying rna_tools/tools/clanstix/README.md -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:40:04,183 copying rna_tools/tools/clanstix/colors.txt -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:40:04,187 copying rna_tools/tools/clanstix/test.sh -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:40:04,191 copying rna_tools/tools/clanstix/test2.sh -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:40:04,196 copying rna_tools/tools/clanstix/test3.sh -> build/lib/rna_tools/tools/clanstix 2025-12-08T19:40:04,200 creating build/lib/rna_tools/tools/clanstix/doc 2025-12-08T19:40:04,202 copying rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2025-12-08T19:40:04,209 copying rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2025-12-08T19:40:04,220 copying rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/lib/rna_tools/tools/clanstix/doc 2025-12-08T19:40:04,282 creating build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,284 copying rna_tools/tools/clanstix/test_data/gmp.clans -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,297 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,309 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,323 copying rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,334 copying rna_tools/tools/clanstix/test_data/matrix.txt -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,339 copying rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,377 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,383 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/lib/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:04,391 creating build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:04,394 copying rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:04,410 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:04,427 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:04,544 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:04,553 copying rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:04,558 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:40:04,562 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:04,564 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:04,571 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:04,580 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:04,587 copying rna_tools/tools/diffpdb/.gitignore -> build/lib/rna_tools/tools/diffpdb 2025-12-08T19:40:04,592 copying rna_tools/tools/diffpdb/README.md -> build/lib/rna_tools/tools/diffpdb 2025-12-08T19:40:04,596 copying rna_tools/tools/diffpdb/test.sh -> build/lib/rna_tools/tools/diffpdb 2025-12-08T19:40:04,600 creating build/lib/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:04,602 copying rna_tools/tools/diffpdb/doc/atom-variants.png -> build/lib/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:04,608 copying rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/lib/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:04,621 copying rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/lib/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:04,636 copying rna_tools/tools/diffpdb/doc/missing-op3.png -> build/lib/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:04,649 copying rna_tools/tools/diffpdb/doc/screenshot.png -> build/lib/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:04,660 copying rna_tools/tools/diffpdb/doc/screenshot2.png -> build/lib/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:04,671 creating build/lib/rna_tools/tools/diffpdb/lib 2025-12-08T19:40:04,672 copying rna_tools/tools/diffpdb/lib/diff2html.py -> build/lib/rna_tools/tools/diffpdb/lib 2025-12-08T19:40:04,678 creating build/lib/rna_tools/tools/diffpdb/output 2025-12-08T19:40:04,680 copying rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/lib/rna_tools/tools/diffpdb/output 2025-12-08T19:40:04,686 creating build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,688 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,698 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,703 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,713 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,719 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,725 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,731 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,736 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,747 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,753 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:04,763 creating build/lib/rna_tools/tools/diffpdb/test_data/1 2025-12-08T19:40:04,765 copying rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2025-12-08T19:40:04,776 copying rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2025-12-08T19:40:04,786 creating build/lib/rna_tools/tools/diffpdb/test_data/2 2025-12-08T19:40:04,788 copying rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2025-12-08T19:40:04,793 copying rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2025-12-08T19:40:04,797 creating build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2025-12-08T19:40:04,799 copying rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2025-12-08T19:40:04,804 copying rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2025-12-08T19:40:04,809 creating build/lib/rna_tools/tools/diffpdb/test_data/4 2025-12-08T19:40:04,811 copying rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2025-12-08T19:40:04,819 copying rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2025-12-08T19:40:04,825 copying rna_tools/tools/extra_functions/numbering.txt -> build/lib/rna_tools/tools/extra_functions 2025-12-08T19:40:04,830 copying rna_tools/tools/mq/README.md -> build/lib/rna_tools/tools/mq 2025-12-08T19:40:04,834 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/lib/rna_tools/tools/mq 2025-12-08T19:40:04,839 copying rna_tools/tools/mq/test.sh -> build/lib/rna_tools/tools/mq 2025-12-08T19:40:04,843 creating build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,845 copying rna_tools/tools/mq/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,853 copying rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,861 copying rna_tools/tools/mq/test/1xjrA.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,870 copying rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,883 copying rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,893 copying rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,901 copying rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,911 copying rna_tools/tools/mq/test/1zhoH.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,919 copying rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,928 copying rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,937 copying rna_tools/tools/mq/test/6TNA.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,953 copying rna_tools/tools/mq/test/all.csv -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,958 copying rna_tools/tools/mq/test/dfire.csv -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,962 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,968 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,973 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,979 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,985 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,991 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:04,997 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:05,002 copying rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:05,008 copying rna_tools/tools/mq/test/test.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:05,017 copying rna_tools/tools/mq/test/test2.pdb -> build/lib/rna_tools/tools/mq/test 2025-12-08T19:40:05,024 creating build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2025-12-08T19:40:05,028 copying rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2025-12-08T19:40:05,032 copying rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:40:05,329 copying rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:40:05,354 copying rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:40:05,389 copying rna_tools/tools/rna_alignment/test.sh -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:40:05,394 copying rna_tools/tools/rna_alignment/test_rchie.sh -> build/lib/rna_tools/tools/rna_alignment 2025-12-08T19:40:05,398 creating build/lib/rna_tools/tools/rna_alignment/pngs 2025-12-08T19:40:05,401 copying rna_tools/tools/rna_alignment/pngs/rchie.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2025-12-08T19:40:05,412 copying rna_tools/tools/rna_alignment/pngs/rscape.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2025-12-08T19:40:05,418 creating build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,421 copying rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,426 copying rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,431 copying rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,436 copying rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,447 copying rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,454 copying rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,470 copying rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,476 copying rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,480 copying rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,490 copying rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,498 copying rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,508 copying rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,514 copying rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,520 copying rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,526 copying rna_tools/tools/rna_alignment/test_data/ade.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,530 copying rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,535 copying rna_tools/tools/rna_alignment/test_data/af27.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,539 copying rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,544 copying rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,548 copying rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,553 copying rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,557 copying rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,562 copying rna_tools/tools/rna_alignment/test_data/target.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,566 copying rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,579 copying rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,585 copying rna_tools/tools/rna_alignment/test_data/xx.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:05,590 creating build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2025-12-08T19:40:05,592 copying rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2025-12-08T19:40:05,620 creating build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:05,622 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:05,627 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:05,631 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:05,636 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:05,640 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:05,644 creating build/lib/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:05,646 copying rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:05,651 copying rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:05,656 copying rna_tools/tools/rna_alignment/test_output/mini.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:05,660 copying rna_tools/tools/rna_alignment/test_output/out.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:05,665 copying rna_tools/tools/rna_alignment/test_output/plot.png -> build/lib/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:05,675 copying rna_tools/tools/rna_alignment/test_output/subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:05,679 copying rna_tools/tools/rna_helix_vis/README.md -> build/lib/rna_tools/tools/rna_helix_vis 2025-12-08T19:40:05,684 creating build/lib/rna_tools/tools/rna_helix_vis/doc 2025-12-08T19:40:05,686 copying rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/lib/rna_tools/tools/rna_helix_vis/doc 2025-12-08T19:40:05,698 creating build/lib/rna_tools/tools/rna_helix_vis/test_data 2025-12-08T19:40:05,700 copying rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2025-12-08T19:40:05,705 copying rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2025-12-08T19:40:05,718 copying rna_tools/tools/rna_x3dna/readme.rst -> build/lib/rna_tools/tools/rna_x3dna 2025-12-08T19:40:05,722 copying rna_tools/tools/rna_x3dna/test.sh -> build/lib/rna_tools/tools/rna_x3dna 2025-12-08T19:40:05,727 creating build/lib/rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:05,729 copying rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:05,740 copying rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:05,744 copying rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:05,760 copying rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:05,765 copying rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:05,779 copying rna_tools/tools/md/.gitignore -> build/lib/rna_tools/tools/md 2025-12-08T19:40:05,783 copying rna_tools/tools/md/README.md -> build/lib/rna_tools/tools/md 2025-12-08T19:40:05,788 copying rna_tools/tools/md/out.txt -> build/lib/rna_tools/tools/md 2025-12-08T19:40:05,792 copying rna_tools/tools/md/test.sh -> build/lib/rna_tools/tools/md 2025-12-08T19:40:05,797 creating build/lib/rna_tools/tools/md/data 2025-12-08T19:40:05,798 copying rna_tools/tools/md/data/rnakb_all.txt -> build/lib/rna_tools/tools/md/data 2025-12-08T19:40:05,805 creating build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,807 copying rna_tools/tools/md/test_data/1duq -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,811 copying rna_tools/tools/md/test_data/1duq.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,819 copying rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,827 copying rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,834 copying rna_tools/tools/md/test_data/3nt.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,840 copying rna_tools/tools/md/test_data/3nt_edited.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,845 copying rna_tools/tools/md/test_data/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,849 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,855 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,861 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,867 copying rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,876 copying rna_tools/tools/md/test_data/groups.txt -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,880 copying rna_tools/tools/md/test_data/temp.pdb -> build/lib/rna_tools/tools/md/test_data 2025-12-08T19:40:05,886 creating build/lib/rna_tools/tools/md/test_output 2025-12-08T19:40:05,888 copying rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2025-12-08T19:40:05,896 copying rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2025-12-08T19:40:05,903 copying rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2025-12-08T19:40:05,910 copying rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2025-12-08T19:40:05,915 copying rna_tools/tools/md/test_output/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_output 2025-12-08T19:40:05,920 copying rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2025-12-08T19:40:05,926 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:05,930 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:05,935 copying rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:05,940 copying rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:05,944 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:05,946 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:05,958 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:05,985 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,000 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,011 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,016 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,020 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,024 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,029 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,033 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:06,038 copying rna_tools/tools/rna_rosetta/.gitignore -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:40:06,042 copying rna_tools/tools/rna_rosetta/test.sh -> build/lib/rna_tools/tools/rna_rosetta 2025-12-08T19:40:06,046 creating build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,048 copying rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,056 copying rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,064 copying rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,073 copying rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,084 copying rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,089 copying rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,094 copying rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,099 copying rna_tools/tools/rna_rosetta/test_data/selected.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,140 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,155 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,186 copying rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,193 copying rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:06,197 creating build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,199 copying rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,204 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,209 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,234 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,238 copying rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,242 copying rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,247 copying rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,251 copying rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,255 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,259 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:06,263 copying rna_tools/tools/rna_sali2dotbracket/README.MD -> build/lib/rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:40:06,267 creating build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2025-12-08T19:40:06,269 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2025-12-08T19:40:06,279 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2025-12-08T19:40:06,288 copying rna_tools/tools/pymol_drawing/README.md -> build/lib/rna_tools/tools/pymol_drawing 2025-12-08T19:40:06,292 creating build/lib/rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:06,294 copying rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:06,301 copying rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:06,310 copying rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:06,319 creating build/lib/rna_tools/tools/pymol_drawing/test_data 2025-12-08T19:40:06,321 copying rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/lib/rna_tools/tools/pymol_drawing/test_data 2025-12-08T19:40:06,326 copying rna_tools/tools/plotting/test.sh -> build/lib/rna_tools/tools/plotting 2025-12-08T19:40:06,330 creating build/lib/rna_tools/tools/plotting/test_data 2025-12-08T19:40:06,332 copying rna_tools/tools/plotting/test_data/rmsds.csv -> build/lib/rna_tools/tools/plotting/test_data 2025-12-08T19:40:06,338 copying rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/lib/rna_tools/tools/plotting/test_data 2025-12-08T19:40:06,344 copying rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/lib/rna_tools/tools/plotting/test_data 2025-12-08T19:40:06,350 copying rna_tools/tools/rna_calc_rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:06,356 copying rna_tools/tools/rna_calc_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:06,360 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,362 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,367 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,371 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,376 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,380 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,384 copying rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,396 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,401 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,405 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,410 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,414 copying rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,419 copying rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,429 copying rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,439 copying rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,449 copying rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:06,460 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:06,463 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:06,472 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:06,480 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:06,489 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:06,497 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:06,499 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:06,508 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:06,517 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:06,525 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:06,533 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:06,543 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:06,545 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:06,550 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:06,572 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:06,593 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2025-12-08T19:40:06,595 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2025-12-08T19:40:06,617 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2025-12-08T19:40:06,649 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2025-12-08T19:40:06,651 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2025-12-08T19:40:06,661 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:06,663 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:06,673 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:06,684 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:06,694 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:06,705 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,708 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,713 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,718 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,723 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,729 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,734 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,749 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,759 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:06,766 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2025-12-08T19:40:06,768 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2025-12-08T19:40:06,774 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2025-12-08T19:40:06,779 copying rna_tools/tools/misc/rna_ok -> build/lib/rna_tools/tools/misc 2025-12-08T19:40:06,784 copying rna_tools/tools/misc/test.sh -> build/lib/rna_tools/tools/misc 2025-12-08T19:40:06,789 copying rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:06,794 copying rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:06,799 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2025-12-08T19:40:06,802 copying rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2025-12-08T19:40:06,857 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:06,860 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:06,866 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:06,871 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:06,876 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:06,881 copying rna_tools/tools/mini_moderna3/.coveragerc -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:40:06,886 copying rna_tools/tools/mini_moderna3/.gitignore -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:40:06,892 copying rna_tools/tools/mini_moderna3/.travis.yml -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:40:06,897 copying rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:40:06,902 copying rna_tools/tools/mini_moderna3/COPYING -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:40:06,912 copying rna_tools/tools/mini_moderna3/MANIFEST.in -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:40:06,917 copying rna_tools/tools/mini_moderna3/README.md -> build/lib/rna_tools/tools/mini_moderna3 2025-12-08T19:40:06,923 copying rna_tools/tools/renum_pdb_to_aln/test.sh -> build/lib/rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:40:06,928 creating build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:06,930 copying rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:06,936 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:06,944 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:06,950 copying rna_tools/tools/pdb_formatix/README.md -> build/lib/rna_tools/tools/pdb_formatix 2025-12-08T19:40:06,957 copying rna_tools/tools/clarna_play/readme.md -> build/lib/rna_tools/tools/clarna_play 2025-12-08T19:40:06,963 copying rna_tools/tools/clarna_play/test.sh -> build/lib/rna_tools/tools/clarna_play 2025-12-08T19:40:06,968 creating build/lib/rna_tools/tools/clarna_play/docs 2025-12-08T19:40:06,970 copying rna_tools/tools/clarna_play/docs/clarna_run.png -> build/lib/rna_tools/tools/clarna_play/docs 2025-12-08T19:40:06,980 creating build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:06,982 copying rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:06,996 copying rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,055 copying rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,070 copying rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,078 copying rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,091 copying rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,103 copying rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,142 copying rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,153 copying rna_tools/tools/clarna_play/test_data/ss.fa -> build/lib/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:07,157 creating build/lib/rna_tools/tools/clarna_play/test_output 2025-12-08T19:40:07,159 copying rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2025-12-08T19:40:07,164 copying rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2025-12-08T19:40:07,168 creating build/lib/rna_tools/tools/clarna_play/tests 2025-12-08T19:40:07,170 copying rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2025-12-08T19:40:07,190 copying rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2025-12-08T19:40:07,200 copying rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2025-12-08T19:40:07,212 copying rna_tools/tools/PyMOL4RNA/README.md -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:07,216 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:07,223 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:07,231 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:07,237 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:07,254 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/lib/rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:07,266 creating build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,268 copying rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,279 copying rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,289 copying rna_tools/tools/PyMOL4RNA/doc/p.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,310 copying rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,328 copying rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,342 copying rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,491 copying rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,510 copying rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,522 copying rna_tools/tools/PyMOL4RNA/doc/run.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,679 copying rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,734 copying rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:07,745 creating build/lib/rna_tools/tools/PyMOL4RNA/test_data 2025-12-08T19:40:07,747 copying rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/lib/rna_tools/tools/PyMOL4RNA/test_data 2025-12-08T19:40:07,763 copying rna_tools/tools/rna_refinement/.gitignore -> build/lib/rna_tools/tools/rna_refinement 2025-12-08T19:40:07,767 copying rna_tools/tools/rna_refinement/test.sh -> build/lib/rna_tools/tools/rna_refinement 2025-12-08T19:40:07,771 creating build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,773 copying rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,784 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,796 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,814 copying rna_tools/tools/rna_refinement/test_data/input.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,831 copying rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,845 copying rna_tools/tools/rna_refinement/test_data/output.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,860 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,873 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:07,886 copying rna_tools/tools/rna_prediction_significance/.gitignore -> build/lib/rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:07,891 copying rna_tools/tools/rna_prediction_significance/LICENSE -> build/lib/rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:07,899 copying rna_tools/tools/rna_prediction_significance/README.md -> build/lib/rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:07,904 creating build/lib/rna_tools/tools/rna_prediction_significance/opt 2025-12-08T19:40:07,906 copying rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/lib/rna_tools/tools/rna_prediction_significance/opt 2025-12-08T19:40:07,912 copying rna_tools/tools/clarna_app/readme.md -> build/lib/rna_tools/tools/clarna_app 2025-12-08T19:40:07,917 copying rna_tools/tools/clarna_app/test.sh -> build/lib/rna_tools/tools/clarna_app 2025-12-08T19:40:07,922 creating build/lib/rna_tools/tools/clarna_app/data 2025-12-08T19:40:07,925 copying rna_tools/tools/clarna_app/data/cl.txt -> build/lib/rna_tools/tools/clarna_app/data 2025-12-08T19:40:07,933 copying rna_tools/tools/clarna_app/data/cl_full.csv -> build/lib/rna_tools/tools/clarna_app/data 2025-12-08T19:40:07,938 copying rna_tools/tools/clarna_app/data/cl_short.csv -> build/lib/rna_tools/tools/clarna_app/data 2025-12-08T19:40:07,942 copying rna_tools/tools/rna_calc_inf/readme.md -> build/lib/rna_tools/tools/rna_calc_inf 2025-12-08T19:40:07,948 copying rna_tools/tools/rna_calc_inf/test.sh -> build/lib/rna_tools/tools/rna_calc_inf 2025-12-08T19:40:07,953 copying rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/lib/rna_tools/tools/rna_calc_inf 2025-12-08T19:40:07,957 creating build/lib/rna_tools/tools/rna_calc_inf/doc 2025-12-08T19:40:07,959 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2025-12-08T19:40:07,972 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2025-12-08T19:40:07,996 creating build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:07,998 copying rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,008 copying rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,020 copying rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,031 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,036 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,042 copying rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,062 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,110 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,114 copying rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,118 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,123 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,127 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,131 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,136 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,140 copying rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:08,145 creating build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,147 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,157 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,168 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,179 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,191 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,204 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,214 copying rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,219 copying rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,223 copying rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:08,227 copying rna_tools/tools/webserver-engine/.gitignore -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,231 copying rna_tools/tools/webserver-engine/README.md -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,237 copying rna_tools/tools/webserver-engine/ac -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,241 copying rna_tools/tools/webserver-engine/checker.sh -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,245 copying rna_tools/tools/webserver-engine/daemon.sh -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,250 copying rna_tools/tools/webserver-engine/ddev.sh -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,254 copying rna_tools/tools/webserver-engine/install.txt -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,259 copying rna_tools/tools/webserver-engine/notes.md -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,263 copying rna_tools/tools/webserver-engine/runme_dev.sh -> build/lib/rna_tools/tools/webserver-engine 2025-12-08T19:40:08,268 creating build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,271 copying rna_tools/tools/webserver-engine/admin/css/base.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,277 copying rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,282 copying rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,286 copying rna_tools/tools/webserver-engine/admin/css/forms.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,291 copying rna_tools/tools/webserver-engine/admin/css/ie.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,295 copying rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,300 copying rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:08,305 creating build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,307 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,311 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,316 copying rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,320 copying rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,324 copying rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,329 copying rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,333 copying rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,338 copying rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,342 copying rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,346 copying rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,351 copying rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,355 copying rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,359 copying rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,364 copying rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,368 copying rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,372 copying rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,377 copying rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,381 copying rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,385 copying rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,390 copying rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,394 copying rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,398 copying rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,402 copying rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,407 copying rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,411 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,415 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,420 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,424 copying rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,428 copying rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,432 copying rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,437 copying rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,441 copying rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,446 copying rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,451 copying rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,455 copying rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,460 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,472 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,483 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,488 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:08,491 creating build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2025-12-08T19:40:08,493 copying rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2025-12-08T19:40:08,498 creating build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,500 copying rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,504 copying rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,509 copying rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,514 copying rna_tools/tools/webserver-engine/admin/js/actions.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,730 copying rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,735 copying rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,740 copying rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,744 copying rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,749 copying rna_tools/tools/webserver-engine/admin/js/compress.py -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,753 copying rna_tools/tools/webserver-engine/admin/js/core.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,758 copying rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,763 copying rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,769 copying rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,773 copying rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,778 copying rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,791 copying rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,800 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,804 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,808 copying rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,813 copying rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:08,818 creating build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:08,820 copying rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:08,826 copying rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:08,831 copying rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:08,835 creating build/lib/rna_tools/tools/webserver-engine/docs 2025-12-08T19:40:08,837 copying rna_tools/tools/webserver-engine/docs/admin.png -> build/lib/rna_tools/tools/webserver-engine/docs 2025-12-08T19:40:08,904 copying rna_tools/tools/webserver-engine/docs/demo.png -> build/lib/rna_tools/tools/webserver-engine/docs 2025-12-08T19:40:08,971 copying rna_tools/tools/mq/eSCORE/test.sh -> build/lib/rna_tools/tools/mq/eSCORE 2025-12-08T19:40:08,975 creating build/lib/rna_tools/tools/mq/eSCORE/test 2025-12-08T19:40:08,977 copying rna_tools/tools/mq/eSCORE/test/escore.txt -> build/lib/rna_tools/tools/mq/eSCORE/test 2025-12-08T19:40:08,981 copying rna_tools/tools/mq/FARFAR2/test.sh -> build/lib/rna_tools/tools/mq/FARFAR2 2025-12-08T19:40:08,986 creating build/lib/rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:08,988 copying rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:08,992 copying rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:08,997 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:09,001 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:09,005 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:09,010 copying rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:40:09,014 copying rna_tools/tools/mq/ClashScore/test.sh -> build/lib/rna_tools/tools/mq/ClashScore 2025-12-08T19:40:09,018 copying rna_tools/tools/mq/Dfire/test.output -> build/lib/rna_tools/tools/mq/Dfire 2025-12-08T19:40:09,023 copying rna_tools/tools/mq/Dfire/test.sh -> build/lib/rna_tools/tools/mq/Dfire 2025-12-08T19:40:09,027 copying rna_tools/tools/mq/rsRNASP/test.sh -> build/lib/rna_tools/tools/mq/rsRNASP 2025-12-08T19:40:09,031 copying rna_tools/tools/mq/RASP/test.sh -> build/lib/rna_tools/tools/mq/RASP 2025-12-08T19:40:09,036 copying rna_tools/tools/mq/SimRNA/test.sh -> build/lib/rna_tools/tools/mq/SimRNA 2025-12-08T19:40:09,040 creating build/lib/rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:09,042 copying rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/lib/rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:09,049 copying rna_tools/tools/mq/SimRNA/test/output.csv -> build/lib/rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:09,053 copying rna_tools/tools/mq/SimRNA/test/test.py -> build/lib/rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:09,058 copying rna_tools/tools/mq/RNA3DCNN/test.output -> build/lib/rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:09,062 copying rna_tools/tools/mq/RNA3DCNN/test.sh -> build/lib/rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:09,066 copying rna_tools/tools/mq/QRNAS/test.sh -> build/lib/rna_tools/tools/mq/QRNAS 2025-12-08T19:40:09,071 copying rna_tools/tools/mq/RNAkb/test.sh -> build/lib/rna_tools/tools/mq/RNAkb 2025-12-08T19:40:09,075 creating build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,077 copying rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,085 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,092 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,098 copying rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,105 copying rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,110 copying rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,117 copying rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,128 copying rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,343 copying rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,349 copying rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,355 copying rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,359 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,365 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,370 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,376 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,381 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:09,386 copying rna_tools/tools/mq/FARNA/test.sh -> build/lib/rna_tools/tools/mq/FARNA 2025-12-08T19:40:09,390 creating build/lib/rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:09,392 copying rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:09,397 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:09,401 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:09,405 copying rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:40:09,416 copying rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:40:09,426 copying rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:40:09,435 copying rna_tools/tools/mq/RASP/test/mq.csv -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:40:09,439 copying rna_tools/tools/mq/RASP/test/test.csv -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:40:09,443 copying rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/lib/rna_tools/tools/mq/RASP/test 2025-12-08T19:40:09,448 copying rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:09,455 copying rna_tools/tools/mq/QRNAS/test/test.output -> build/lib/rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:09,459 copying rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:09,471 copying rna_tools/tools/mq/lib/wrappers/README.md -> build/lib/rna_tools/tools/mq/lib/wrappers 2025-12-08T19:40:09,475 copying rna_tools/tools/mq/lib/timex/.gitignore -> build/lib/rna_tools/tools/mq/lib/timex 2025-12-08T19:40:09,479 copying rna_tools/tools/mq/lib/timex/LICENSE -> build/lib/rna_tools/tools/mq/lib/timex 2025-12-08T19:40:09,485 copying rna_tools/tools/mq/lib/timex/README.md -> build/lib/rna_tools/tools/mq/lib/timex 2025-12-08T19:40:09,489 copying rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:09,495 copying rna_tools/tools/mq/lib/shellgraphics/README.md -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:09,500 copying rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:09,504 copying rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:09,510 copying rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:09,516 copying rna_tools/tools/rna_alignment/utils/test.sh -> build/lib/rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:09,519 creating build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,521 copying rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,526 copying rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,530 copying rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,534 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,538 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,543 copying rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,547 copying rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:09,551 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:09,555 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:09,559 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:09,563 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:09,567 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:09,569 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:09,576 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:09,582 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:09,587 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:09,591 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:09,595 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:09,599 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,601 copying rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,610 copying rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,617 copying rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,623 copying rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,638 copying rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,644 copying rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,650 copying rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,656 copying rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,661 copying rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,666 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,671 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,677 copying rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,683 copying rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:09,689 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,692 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,697 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,702 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,707 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,712 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,718 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,723 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,728 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,733 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,739 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,744 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,749 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,754 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,758 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,763 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,768 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,773 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,780 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,785 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,789 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,794 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,798 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,803 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,808 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,812 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,817 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,822 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,827 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,832 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,838 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,843 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,848 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,853 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,858 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,863 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,868 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,873 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,878 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,883 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,888 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,893 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,899 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,904 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,909 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,914 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,919 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,925 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,930 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,936 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,941 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,945 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,950 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,954 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,959 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,963 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,967 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,972 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,976 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,981 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,985 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,989 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,994 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:09,998 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,002 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,007 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,011 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,016 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,020 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,024 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,029 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,033 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,038 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,042 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,046 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,051 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,055 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,059 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,064 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,069 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,073 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,078 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,082 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,087 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,092 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,096 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,101 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,106 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,110 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,115 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,119 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,124 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,128 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,133 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,137 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,141 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,146 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,150 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,155 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,159 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,163 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,168 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,172 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,177 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,181 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,185 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,190 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,194 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,198 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,202 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,207 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,211 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,216 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,220 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,224 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,229 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,233 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,238 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,242 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,249 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,254 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,261 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,265 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,269 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,274 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,278 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,282 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,287 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,291 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,295 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,300 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,304 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,308 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,313 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,317 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,322 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,326 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,330 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,335 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,339 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,343 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,348 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,352 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,357 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,361 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,366 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,370 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,374 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,379 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,383 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,387 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,392 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,396 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,400 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,405 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,409 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,414 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,418 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,422 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,427 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,431 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,435 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,440 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,444 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,449 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,453 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,457 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,461 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,466 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,470 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,474 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,479 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,483 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,488 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,492 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,497 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,501 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,505 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,510 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,514 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,519 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,523 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,528 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,532 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,537 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,541 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,546 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,550 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,554 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,559 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,563 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,567 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,572 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,576 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,580 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,585 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,589 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,594 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,598 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,602 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,607 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,611 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,615 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,620 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,624 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:10,629 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,630 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,635 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,639 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,644 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,648 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,652 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,657 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,661 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,665 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,670 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,674 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,679 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,683 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,687 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,692 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,696 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,700 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,704 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,709 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,714 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,718 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,722 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,727 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,731 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,735 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,739 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,744 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,748 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:10,752 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,755 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,759 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,764 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,770 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,774 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,779 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,783 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,788 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,792 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,796 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,801 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,806 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,811 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,815 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,820 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,824 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,829 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,833 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,838 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,842 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,847 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,854 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,858 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,867 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,871 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,876 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,880 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,885 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,889 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,894 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,898 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,903 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,908 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,912 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,917 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,921 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,926 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,931 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,936 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,940 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,945 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,950 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,954 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,959 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,963 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,968 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,972 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,977 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,982 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,987 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,991 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:10,996 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,000 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,005 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,009 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,014 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,018 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,023 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,028 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,032 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,037 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,042 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,046 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,051 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,056 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,060 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,065 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,069 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,074 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,078 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:11,082 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:11,084 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:11,089 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:11,094 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:11,098 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:11,103 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:11,106 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,109 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,115 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,120 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,125 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,130 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,136 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,142 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,147 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,151 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:11,156 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:11,159 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:11,165 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:11,171 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:11,178 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:11,184 copying rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,195 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,205 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,217 copying rna_tools/tools/pdb_formatix/test/protein.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,223 copying rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,227 copying rna_tools/tools/pdb_formatix/test/test0.in -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,237 copying rna_tools/tools/pdb_formatix/test/test0.out -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,248 copying rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,256 copying rna_tools/tools/pdb_formatix/test/test1.in -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,262 copying rna_tools/tools/pdb_formatix/test/test1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,268 copying rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,295 copying rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,303 copying rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/lib/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:11,327 copying rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:11,333 copying rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:11,338 copying rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:11,344 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:11,347 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:11,465 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:11,575 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:11,800 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:11,825 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:11,831 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:11,836 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:12,137 creating build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:12,139 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:12,146 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:12,151 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:12,157 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2025-12-08T19:40:12,160 copying rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2025-12-08T19:40:12,164 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2025-12-08T19:40:12,166 copying rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2025-12-08T19:40:12,171 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:12,173 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:12,181 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:12,188 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:12,193 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:12,207 creating build/lib/rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:12,211 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:12,217 copying rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:12,529 copying rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:12,534 copying rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:12,539 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:12,542 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:12,548 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:12,554 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:12,564 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:12,572 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:12,575 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:12,587 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:12,592 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:12,599 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:12,604 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:12,606 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:12,614 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:12,621 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:12,635 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:12,644 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:12,651 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:12,653 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:12,659 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:12,665 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:12,670 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:12,675 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:12,680 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:12,684 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2025-12-08T19:40:12,686 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2025-12-08T19:40:12,691 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:12,694 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:12,700 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:12,706 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:12,710 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:12,721 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:12,731 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:12,748 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2025-12-08T19:40:12,751 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2025-12-08T19:40:12,756 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2025-12-08T19:40:12,762 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2025-12-08T19:40:12,765 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2025-12-08T19:40:12,770 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:12,772 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:12,781 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:12,790 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:12,794 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:12,798 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,801 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,806 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,810 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,815 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,820 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,824 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,829 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,833 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,838 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,843 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,848 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,853 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,859 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,864 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:12,869 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:12,871 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:12,876 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:12,886 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:12,902 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2025-12-08T19:40:12,905 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2025-12-08T19:40:12,910 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2025-12-08T19:40:12,912 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2025-12-08T19:40:12,917 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:12,919 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:12,927 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:12,933 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:12,939 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2025-12-08T19:40:12,943 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2025-12-08T19:40:12,948 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:12,951 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:12,957 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:12,962 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:12,968 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:12,973 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2025-12-08T19:40:12,976 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2025-12-08T19:40:12,982 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2025-12-08T19:40:12,988 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:12,991 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:12,996 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:13,002 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:13,010 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:13,026 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2025-12-08T19:40:13,029 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2025-12-08T19:40:13,034 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2025-12-08T19:40:13,038 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2025-12-08T19:40:13,040 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2025-12-08T19:40:13,046 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2025-12-08T19:40:13,051 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2025-12-08T19:40:13,053 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2025-12-08T19:40:13,059 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2025-12-08T19:40:13,063 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2025-12-08T19:40:13,066 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2025-12-08T19:40:13,093 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2025-12-08T19:40:13,095 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2025-12-08T19:40:13,101 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2025-12-08T19:40:13,107 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2025-12-08T19:40:13,109 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2025-12-08T19:40:13,114 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2025-12-08T19:40:13,120 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2025-12-08T19:40:13,122 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2025-12-08T19:40:13,126 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:13,128 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:13,133 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:13,138 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:13,143 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:13,147 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:13,150 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:13,157 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:13,163 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:13,183 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:13,206 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2025-12-08T19:40:13,209 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2025-12-08T19:40:13,215 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2025-12-08T19:40:13,220 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:13,222 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:13,231 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:13,237 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:13,248 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,250 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,278 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,303 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,309 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,315 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,328 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,341 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,354 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,364 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,375 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,390 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,399 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,418 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,423 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,428 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,433 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,438 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,459 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,464 copying rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,468 copying rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,473 copying rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,479 copying rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,484 copying rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,493 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,498 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,503 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,509 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,515 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,522 copying rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,527 copying rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,533 copying rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,538 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,559 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,607 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,613 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,662 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,683 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:13,695 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2025-12-08T19:40:13,697 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2025-12-08T19:40:13,703 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2025-12-08T19:40:13,771 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2025-12-08T19:40:13,774 copying rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2025-12-08T19:40:13,779 copying rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2025-12-08T19:40:13,791 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,793 copying rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,800 copying rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,817 copying rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,835 copying rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,843 copying rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,879 copying rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,909 copying rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,927 copying rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,945 copying rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,949 copying rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:13,957 creating build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,960 copying rna_tools/tools/webserver-engine/app/templates/about.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,964 copying rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,971 copying rna_tools/tools/webserver-engine/app/templates/assess.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,977 copying rna_tools/tools/webserver-engine/app/templates/base.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,982 copying rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,988 copying rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,993 copying rna_tools/tools/webserver-engine/app/templates/cat.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:13,998 copying rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,004 copying rna_tools/tools/webserver-engine/app/templates/contact.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,008 copying rna_tools/tools/webserver-engine/app/templates/delete.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,014 copying rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,019 copying rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,023 copying rna_tools/tools/webserver-engine/app/templates/edit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,029 copying rna_tools/tools/webserver-engine/app/templates/errors.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,033 copying rna_tools/tools/webserver-engine/app/templates/extract.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,039 copying rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,043 copying rna_tools/tools/webserver-engine/app/templates/help.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,054 copying rna_tools/tools/webserver-engine/app/templates/home.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,059 copying rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,064 copying rna_tools/tools/webserver-engine/app/templates/min.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,070 copying rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,075 copying rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,080 copying rna_tools/tools/webserver-engine/app/templates/notes.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,085 copying rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,091 copying rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,096 copying rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,101 copying rna_tools/tools/webserver-engine/app/templates/seq.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,106 copying rna_tools/tools/webserver-engine/app/templates/ss.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,111 copying rna_tools/tools/webserver-engine/app/templates/swap.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,116 copying rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,121 copying rna_tools/tools/webserver-engine/app/templates/tools.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,126 copying rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:14,130 creating build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:14,133 copying rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:14,138 copying rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:14,144 copying rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:14,149 copying rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:14,154 copying rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:14,273 UPDATING build/lib/rna_tools/_version.py 2025-12-08T19:40:14,273 set build/lib/rna_tools/_version.py to '3.25' 2025-12-08T19:40:14,274 running build_scripts 2025-12-08T19:40:14,274 creating build/scripts-3.9 2025-12-08T19:40:14,277 copying and adjusting rna_tools/rna_pdb_tools.py -> build/scripts-3.9 2025-12-08T19:40:14,287 copying and adjusting rna_tools/rna_calc_fenergy.py -> build/scripts-3.9 2025-12-08T19:40:14,290 copying and adjusting rna_tools/rna_pdb_replace.py -> build/scripts-3.9 2025-12-08T19:40:14,293 copying and adjusting rna_tools/rna_standardize.py -> build/scripts-3.9 2025-12-08T19:40:14,298 copying and adjusting rna_tools/rna_pdb_inspect.py -> build/scripts-3.9 2025-12-08T19:40:14,301 copying and adjusting rna_tools/rna_cif2pdb.py -> build/scripts-3.9 2025-12-08T19:40:14,305 copying and adjusting rna_tools/rna_pdb_fetch_header.py -> build/scripts-3.9 2025-12-08T19:40:14,308 copying and adjusting rna_tools/tools/misc/rna_tools_which.py -> build/scripts-3.9 2025-12-08T19:40:14,311 copying and adjusting rna_tools/tools/misc/rna_tools_demo.py -> build/scripts-3.9 2025-12-08T19:40:14,314 copying and adjusting rna_tools/tools/workflow/rna_workflow.py -> build/scripts-3.9 2025-12-08T19:40:14,318 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/scripts-3.9 2025-12-08T19:40:14,324 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/scripts-3.9 2025-12-08T19:40:14,328 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/scripts-3.9 2025-12-08T19:40:14,333 copying and adjusting rna_tools/rna_torsions.py -> build/scripts-3.9 2025-12-08T19:40:14,337 copying and adjusting rna_tools/tools/diffpdb/diffpdb.py -> build/scripts-3.9 2025-12-08T19:40:14,342 copying and adjusting rna_tools/tools/clanstix/rna_clanstix.py -> build/scripts-3.9 2025-12-08T19:40:14,348 copying and adjusting rna_tools/rna_dot2ct.py -> build/scripts-3.9 2025-12-08T19:40:14,353 copying and adjusting rna_tools/rna_secondary_structure_prediction.py -> build/scripts-3.9 2025-12-08T19:40:14,357 copying and adjusting rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/scripts-3.9 2025-12-08T19:40:14,361 copying and adjusting rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/scripts-3.9 2025-12-08T19:40:14,364 copying and adjusting rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/scripts-3.9 2025-12-08T19:40:14,370 copying and adjusting rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/scripts-3.9 2025-12-08T19:40:14,374 copying and adjusting rna_tools/tools/clarna_app/rna_clarna_app.py -> build/scripts-3.9 2025-12-08T19:40:14,379 copying and adjusting rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/scripts-3.9 2025-12-08T19:40:14,383 copying and adjusting rna_tools/tools/misc/rna_add_chain.py -> build/scripts-3.9 2025-12-08T19:40:14,387 copying and adjusting rna_tools/tools/misc/rna_dict2fasta.py -> build/scripts-3.9 2025-12-08T19:40:14,391 copying and adjusting rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/scripts-3.9 2025-12-08T19:40:14,395 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/scripts-3.9 2025-12-08T19:40:14,400 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/scripts-3.9 2025-12-08T19:40:14,405 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/scripts-3.9 2025-12-08T19:40:14,409 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/scripts-3.9 2025-12-08T19:40:14,413 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.9 2025-12-08T19:40:14,418 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/scripts-3.9 2025-12-08T19:40:14,422 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/scripts-3.9 2025-12-08T19:40:14,427 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/scripts-3.9 2025-12-08T19:40:14,431 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/scripts-3.9 2025-12-08T19:40:14,435 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/scripts-3.9 2025-12-08T19:40:14,438 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.9 2025-12-08T19:40:14,442 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/scripts-3.9 2025-12-08T19:40:14,446 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/scripts-3.9 2025-12-08T19:40:14,451 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.9 2025-12-08T19:40:14,455 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.9 2025-12-08T19:40:14,459 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.9 2025-12-08T19:40:14,463 copying and adjusting rna_tools/tools/plotting/rna_plot_hist.py -> build/scripts-3.9 2025-12-08T19:40:14,468 copying and adjusting rna_tools/tools/plotting/rna_plot_density.py -> build/scripts-3.9 2025-12-08T19:40:14,473 copying and adjusting rna_tools/tools/plotting/rna_plot_heatmap.py -> build/scripts-3.9 2025-12-08T19:40:14,477 copying and adjusting rna_tools/tools/plotting/rna_plot_dendogram.py -> build/scripts-3.9 2025-12-08T19:40:14,482 copying and adjusting rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/scripts-3.9 2025-12-08T19:40:14,485 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.9 2025-12-08T19:40:14,489 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.9 2025-12-08T19:40:14,493 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.9 2025-12-08T19:40:14,498 copying and adjusting rna_tools/tools/rna_filter/rna_filter.py -> build/scripts-3.9 2025-12-08T19:40:14,503 copying and adjusting rna_tools/tools/rna_filter/rna_ec2x.py -> build/scripts-3.9 2025-12-08T19:40:14,507 copying and adjusting rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/scripts-3.9 2025-12-08T19:40:14,511 copying and adjusting rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/scripts-3.9 2025-12-08T19:40:14,515 copying and adjusting rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/scripts-3.9 2025-12-08T19:40:14,519 copying and adjusting rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/scripts-3.9 2025-12-08T19:40:14,523 copying and adjusting rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/scripts-3.9 2025-12-08T19:40:14,527 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.9 2025-12-08T19:40:14,532 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/scripts-3.9 2025-12-08T19:40:14,537 copying and adjusting rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/scripts-3.9 2025-12-08T19:40:14,541 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.9 2025-12-08T19:40:14,545 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/scripts-3.9 2025-12-08T19:40:14,549 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/scripts-3.9 2025-12-08T19:40:14,553 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/scripts-3.9 2025-12-08T19:40:14,558 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/scripts-3.9 2025-12-08T19:40:14,562 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/scripts-3.9 2025-12-08T19:40:14,566 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/scripts-3.9 2025-12-08T19:40:14,571 copying and adjusting rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/scripts-3.9 2025-12-08T19:40:14,578 copying and adjusting rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/scripts-3.9 2025-12-08T19:40:14,584 copying and adjusting rna_tools/tools/rna_refinement/rna_refinement.py -> build/scripts-3.9 2025-12-08T19:40:14,589 copying and adjusting rna_tools/rna_simrnaweb_download_job.py -> build/scripts-3.9 2025-12-08T19:40:14,594 copying and adjusting rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/scripts-3.9 2025-12-08T19:40:14,599 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/scripts-3.9 2025-12-08T19:40:14,604 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/scripts-3.9 2025-12-08T19:40:14,608 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/scripts-3.9 2025-12-08T19:40:14,612 copying and adjusting rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/scripts-3.9 2025-12-08T19:40:14,618 copying and adjusting rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/scripts-3.9 2025-12-08T19:40:14,622 copying and adjusting rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/scripts-3.9 2025-12-08T19:40:14,628 copying and adjusting rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/scripts-3.9 2025-12-08T19:40:14,634 copying and adjusting rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/scripts-3.9 2025-12-08T19:40:14,638 copying and adjusting rna_tools/tools/misc/translate.py -> build/scripts-3.9 2025-12-08T19:40:14,642 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.9 2025-12-08T19:40:14,645 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.9 2025-12-08T19:40:14,649 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/scripts-3.9 2025-12-08T19:40:14,653 copying and adjusting rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/scripts-3.9 2025-12-08T19:40:14,657 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/scripts-3.9 2025-12-08T19:40:14,661 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/scripts-3.9 2025-12-08T19:40:14,665 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.9 2025-12-08T19:40:14,668 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.9 2025-12-08T19:40:14,672 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/scripts-3.9 2025-12-08T19:40:14,676 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/scripts-3.9 2025-12-08T19:40:14,680 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/scripts-3.9 2025-12-08T19:40:14,684 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/scripts-3.9 2025-12-08T19:40:14,688 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/scripts-3.9 2025-12-08T19:40:14,697 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_run.py -> build/scripts-3.9 2025-12-08T19:40:14,706 copying and adjusting rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/scripts-3.9 2025-12-08T19:40:14,714 copying and adjusting rna_tools/tools/mq/rna_mq_score.py -> build/scripts-3.9 2025-12-08T19:40:14,719 copying and adjusting rna_tools/tools/mq/rna_mq_collect.py -> build/scripts-3.9 2025-12-08T19:40:14,726 copying and adjusting rna_tools/tools/mq/rna_mq_exp.py -> build/scripts-3.9 2025-12-08T19:40:14,730 copying and adjusting rna_tools/tools/mq/rna_mq_plot.py -> build/scripts-3.9 2025-12-08T19:40:14,734 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/scripts-3.9 2025-12-08T19:40:14,739 copying and adjusting rna_tools/tools/mq/rna_mq_wx_collect.py -> build/scripts-3.9 2025-12-08T19:40:14,743 copying and adjusting rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/scripts-3.9 2025-12-08T19:40:14,747 copying and adjusting rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/scripts-3.9 2025-12-08T19:40:14,751 copying and adjusting rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/scripts-3.9 2025-12-08T19:40:14,755 copying and adjusting rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/scripts-3.9 2025-12-08T19:40:14,758 copying and adjusting rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/scripts-3.9 2025-12-08T19:40:14,762 copying and adjusting rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/scripts-3.9 2025-12-08T19:40:14,766 copying and adjusting rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/scripts-3.9 2025-12-08T19:40:14,770 copying and adjusting rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/scripts-3.9 2025-12-08T19:40:14,775 copying and adjusting rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/scripts-3.9 2025-12-08T19:40:14,779 copying and adjusting rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/scripts-3.9 2025-12-08T19:40:14,783 copying and adjusting rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/scripts-3.9 2025-12-08T19:40:14,787 copying and adjusting rna_tools/tools/md/rna_gromacs_ready.py -> build/scripts-3.9 2025-12-08T19:40:14,791 copying and adjusting rna_tools/tools/md/rna_md.py -> build/scripts-3.9 2025-12-08T19:40:14,796 copying and adjusting rna_tools/tools/md/rna_minimize.py -> build/scripts-3.9 2025-12-08T19:40:14,800 copying and adjusting rna_tools/tools/md/rna_traj_n.py -> build/scripts-3.9 2025-12-08T19:40:14,804 copying and adjusting rna_tools/tools/md/rna_traj_range.py -> build/scripts-3.9 2025-12-08T19:40:14,808 copying and adjusting rna_tools/tools/md/rna_traj_nohetm.py -> build/scripts-3.9 2025-12-08T19:40:14,812 copying and adjusting rna_tools/tools/triplexibility/triplexibility.py -> build/scripts-3.9 2025-12-08T19:40:14,818 copying and adjusting rna_tools/tools/triplexibility/triplexibility2.py -> build/scripts-3.9 2025-12-08T19:40:14,824 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/scripts-3.9 2025-12-08T19:40:14,828 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen.py -> build/scripts-3.9 2025-12-08T19:40:14,832 copying and adjusting rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/scripts-3.9 2025-12-08T19:40:14,836 copying and adjusting rna_tools/tools/triplexibility/trx_score.py -> build/scripts-3.9 2025-12-08T19:40:14,840 copying and adjusting rna_tools/tools/triplexibility/trx_score_onCol.py -> build/scripts-3.9 2025-12-08T19:40:14,845 copying and adjusting rna_tools/tools/df/rna_df_csv_sort.py -> build/scripts-3.9 2025-12-08T19:40:14,848 copying and adjusting rna_tools/tools/df/rna_df_concat.py -> build/scripts-3.9 2025-12-08T19:40:14,852 copying and adjusting rna_tools/tools/df/rna_df_merge.py -> build/scripts-3.9 2025-12-08T19:40:14,856 copying and adjusting rna_tools/tools/df/rna_df_merge_on.py -> build/scripts-3.9 2025-12-08T19:40:14,860 copying and adjusting rna_tools/tools/df/rna_df_merge_two.py -> build/scripts-3.9 2025-12-08T19:40:14,865 copying and adjusting rna_tools/tools/misc/rna_ok_mail.py -> build/scripts-3.9 2025-12-08T19:40:14,870 copying rna_tools/tools/misc/rna_ok -> build/scripts-3.9 2025-12-08T19:40:14,874 copying and adjusting rna_tools/tools/misc/rna_test_cuda.py -> build/scripts-3.9 2025-12-08T19:40:14,878 copying and adjusting rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/scripts-3.9 2025-12-08T19:40:14,883 copying and adjusting rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/scripts-3.9 2025-12-08T19:40:14,887 copying and adjusting rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/scripts-3.9 2025-12-08T19:40:14,892 copying and adjusting rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/scripts-3.9 2025-12-08T19:40:14,895 changing mode of build/scripts-3.9/rna_pdb_tools.py from 644 to 755 2025-12-08T19:40:14,896 changing mode of build/scripts-3.9/rna_calc_fenergy.py from 644 to 755 2025-12-08T19:40:14,897 changing mode of build/scripts-3.9/rna_pdb_replace.py from 644 to 755 2025-12-08T19:40:14,898 changing mode of build/scripts-3.9/rna_standardize.py from 644 to 755 2025-12-08T19:40:14,898 changing mode of build/scripts-3.9/rna_pdb_inspect.py from 644 to 755 2025-12-08T19:40:14,899 changing mode of build/scripts-3.9/rna_cif2pdb.py from 644 to 755 2025-12-08T19:40:14,900 changing mode of build/scripts-3.9/rna_pdb_fetch_header.py from 644 to 755 2025-12-08T19:40:14,900 changing mode of build/scripts-3.9/rna_tools_which.py from 644 to 755 2025-12-08T19:40:14,901 changing mode of build/scripts-3.9/rna_tools_demo.py from 644 to 755 2025-12-08T19:40:14,902 changing mode of build/scripts-3.9/rna_workflow.py from 644 to 755 2025-12-08T19:40:14,903 changing mode of build/scripts-3.9/rna_calc_rmsd.py from 644 to 755 2025-12-08T19:40:14,904 changing mode of build/scripts-3.9/rna_calc_rmsd_all_vs_all.py from 644 to 755 2025-12-08T19:40:14,904 changing mode of build/scripts-3.9/rna_calc_rmsd_biopython.py from 644 to 755 2025-12-08T19:40:14,905 changing mode of build/scripts-3.9/rna_torsions.py from 644 to 755 2025-12-08T19:40:14,906 changing mode of build/scripts-3.9/diffpdb.py from 644 to 755 2025-12-08T19:40:14,906 changing mode of build/scripts-3.9/rna_clanstix.py from 644 to 755 2025-12-08T19:40:14,907 changing mode of build/scripts-3.9/rna_dot2ct.py from 644 to 755 2025-12-08T19:40:14,908 changing mode of build/scripts-3.9/rna_secondary_structure_prediction.py from 644 to 755 2025-12-08T19:40:14,909 changing mode of build/scripts-3.9/rna_prediction_significance.py from 644 to 755 2025-12-08T19:40:14,909 changing mode of build/scripts-3.9/rna_pdb_merge_into_one.py from 644 to 755 2025-12-08T19:40:14,910 changing mode of build/scripts-3.9/rna_calc_inf.py from 644 to 755 2025-12-08T19:40:14,911 changing mode of build/scripts-3.9/rna_pk_simrna_to_one_line.py from 644 to 755 2025-12-08T19:40:14,911 changing mode of build/scripts-3.9/rna_clarna_app.py from 644 to 755 2025-12-08T19:40:14,912 changing mode of build/scripts-3.9/rna_helix_vis.py from 644 to 755 2025-12-08T19:40:14,913 changing mode of build/scripts-3.9/rna_add_chain.py from 644 to 755 2025-12-08T19:40:14,913 changing mode of build/scripts-3.9/rna_dict2fasta.py from 644 to 755 2025-12-08T19:40:14,914 changing mode of build/scripts-3.9/rna_sali2dotbracket.py from 644 to 755 2025-12-08T19:40:14,915 changing mode of build/scripts-3.9/rna_rosetta_run.py from 644 to 755 2025-12-08T19:40:14,916 changing mode of build/scripts-3.9/rna_rosetta_cluster.py from 644 to 755 2025-12-08T19:40:14,916 changing mode of build/scripts-3.9/rna_rosetta_min.py from 644 to 755 2025-12-08T19:40:14,917 changing mode of build/scripts-3.9/rna_rosetta_n.py from 644 to 755 2025-12-08T19:40:14,918 changing mode of build/scripts-3.9/rna_rosetta_silent_file_sort_and_select.py from 644 to 755 2025-12-08T19:40:14,918 changing mode of build/scripts-3.9/rna_rosetta_extract_lowscore_decoys.py from 644 to 755 2025-12-08T19:40:14,919 changing mode of build/scripts-3.9/rna_rosetta_check_progress.py from 644 to 755 2025-12-08T19:40:14,920 changing mode of build/scripts-3.9/rna_rosetta_head.py from 644 to 755 2025-12-08T19:40:14,920 changing mode of build/scripts-3.9/rna_rosetta_extract.py from 644 to 755 2025-12-08T19:40:14,921 changing mode of build/scripts-3.9/rna_rosetta_get_score.py from 644 to 755 2025-12-08T19:40:14,922 changing mode of build/scripts-3.9/rna_rosetta_silent_random.py from 644 to 755 2025-12-08T19:40:14,922 changing mode of build/scripts-3.9/rna_rosetta_silent_split.py from 644 to 755 2025-12-08T19:40:14,923 changing mode of build/scripts-3.9/rna_simrna_lowest.py from 644 to 755 2025-12-08T19:40:14,924 changing mode of build/scripts-3.9/rna_simrna_extract.py from 644 to 755 2025-12-08T19:40:14,925 changing mode of build/scripts-3.9/rna_simrna_cluster.py from 644 to 755 2025-12-08T19:40:14,926 changing mode of build/scripts-3.9/rna_plot_hist.py from 644 to 755 2025-12-08T19:40:14,926 changing mode of build/scripts-3.9/rna_plot_density.py from 644 to 755 2025-12-08T19:40:14,927 changing mode of build/scripts-3.9/rna_plot_heatmap.py from 644 to 755 2025-12-08T19:40:14,927 changing mode of build/scripts-3.9/rna_plot_dendogram.py from 644 to 755 2025-12-08T19:40:14,928 changing mode of build/scripts-3.9/rna_plot_boxplotlike.py from 644 to 755 2025-12-08T19:40:14,929 changing mode of build/scripts-3.9/rna_filter.py from 644 to 755 2025-12-08T19:40:14,930 changing mode of build/scripts-3.9/rna_ec2x.py from 644 to 755 2025-12-08T19:40:14,930 changing mode of build/scripts-3.9/rna_pairs2SimRNArestrs.py from 644 to 755 2025-12-08T19:40:14,931 changing mode of build/scripts-3.9/rna_ss_get_bps.py from 644 to 755 2025-12-08T19:40:14,932 changing mode of build/scripts-3.9/rna_pairs_diff.py from 644 to 755 2025-12-08T19:40:14,932 changing mode of build/scripts-3.9/rna_download_rfam.py from 644 to 755 2025-12-08T19:40:14,933 changing mode of build/scripts-3.9/rna_align_coverage.py from 644 to 755 2025-12-08T19:40:14,934 changing mode of build/scripts-3.9/rna_align_seq_to_alignment.py from 644 to 755 2025-12-08T19:40:14,935 changing mode of build/scripts-3.9/rna_align_find_core.py from 644 to 755 2025-12-08T19:40:14,935 changing mode of build/scripts-3.9/rna_align_get_ss_from_stk.py from 644 to 755 2025-12-08T19:40:14,936 changing mode of build/scripts-3.9/rna_align_fetch_seed.py from 644 to 755 2025-12-08T19:40:14,937 changing mode of build/scripts-3.9/rna_align_fetch_cm.py from 644 to 755 2025-12-08T19:40:14,937 changing mode of build/scripts-3.9/rna_alignment_get_species.py from 644 to 755 2025-12-08T19:40:14,938 changing mode of build/scripts-3.9/rna_alignment_process_id.py from 644 to 755 2025-12-08T19:40:14,939 changing mode of build/scripts-3.9/rna_alignment_r2r.py from 644 to 755 2025-12-08T19:40:14,939 changing mode of build/scripts-3.9/rna_align_find_seq_in_alignment.py from 644 to 755 2025-12-08T19:40:14,940 changing mode of build/scripts-3.9/rna_align_foldability.py from 644 to 755 2025-12-08T19:40:14,941 changing mode of build/scripts-3.9/rna_pdb_edit_occupancy_bfactor.py from 644 to 755 2025-12-08T19:40:14,942 changing mode of build/scripts-3.9/rna_refinement.py from 644 to 755 2025-12-08T19:40:14,942 changing mode of build/scripts-3.9/rna_simrnaweb_download_job.py from 644 to 755 2025-12-08T19:40:14,943 changing mode of build/scripts-3.9/rna_calc_evo_rmsd.py from 644 to 755 2025-12-08T19:40:14,944 changing mode of build/scripts-3.9/rna_calc_rmsd_multi_targets.py from 644 to 755 2025-12-08T19:40:14,944 changing mode of build/scripts-3.9/rna_calc_rmsd_trafl.py from 644 to 755 2025-12-08T19:40:14,945 changing mode of build/scripts-3.9/rna_cal_rmsd_trafl_plot.py from 644 to 755 2025-12-08T19:40:14,946 changing mode of build/scripts-3.9/rna_x3dna.py from 644 to 755 2025-12-08T19:40:14,946 changing mode of build/scripts-3.9/renum_pdb_to_aln.py from 644 to 755 2025-12-08T19:40:14,947 changing mode of build/scripts-3.9/pdbs_measure_atom_dists.py from 644 to 755 2025-12-08T19:40:14,948 changing mode of build/scripts-3.9/random_assignment_of_nucleotides.py from 644 to 755 2025-12-08T19:40:14,948 changing mode of build/scripts-3.9/select_seq_fromBLAStn_6outfm.py from 644 to 755 2025-12-08T19:40:14,949 changing mode of build/scripts-3.9/translate.py from 644 to 755 2025-12-08T19:40:14,950 changing mode of build/scripts-3.9/reverse.py from 644 to 755 2025-12-08T19:40:14,951 changing mode of build/scripts-3.9/rna_align_strip_stk.py from 644 to 755 2025-12-08T19:40:14,951 changing mode of build/scripts-3.9/pymol_color_by_conserv.py from 644 to 755 2025-12-08T19:40:14,952 changing mode of build/scripts-3.9/pymol_preview_generator.py from 644 to 755 2025-12-08T19:40:14,953 changing mode of build/scripts-3.9/pymol_preview_install.py from 644 to 755 2025-12-08T19:40:14,954 changing mode of build/scripts-3.9/rna_dG2kd.py from 644 to 755 2025-12-08T19:40:14,954 changing mode of build/scripts-3.9/rna_kd2dG.py from 644 to 755 2025-12-08T19:40:14,955 changing mode of build/scripts-3.9/rna_kd2pkd.py from 644 to 755 2025-12-08T19:40:14,956 changing mode of build/scripts-3.9/rna_pkd2dG.py from 644 to 755 2025-12-08T19:40:14,957 changing mode of build/scripts-3.9/rna_pkd2kd.py from 644 to 755 2025-12-08T19:40:14,957 changing mode of build/scripts-3.9/rna_clarna_compare.py from 644 to 755 2025-12-08T19:40:14,958 changing mode of build/scripts-3.9/rna_clarna_run.py from 644 to 755 2025-12-08T19:40:14,959 changing mode of build/scripts-3.9/clarna.py from 644 to 755 2025-12-08T19:40:14,959 changing mode of build/scripts-3.9/rna_mq_score.py from 644 to 755 2025-12-08T19:40:14,960 changing mode of build/scripts-3.9/rna_mq_collect.py from 644 to 755 2025-12-08T19:40:14,961 changing mode of build/scripts-3.9/rna_mq_exp.py from 644 to 755 2025-12-08T19:40:14,961 changing mode of build/scripts-3.9/rna_mq_plot.py from 644 to 755 2025-12-08T19:40:14,962 changing mode of build/scripts-3.9/rna_mq_wx_collect.py from 644 to 755 2025-12-08T19:40:14,963 changing mode of build/scripts-3.9/rna_mq_rna3dcnn.py from 644 to 755 2025-12-08T19:40:14,963 changing mode of build/scripts-3.9/rna_mq_dfire.py from 644 to 755 2025-12-08T19:40:14,964 changing mode of build/scripts-3.9/rna_mq_clashscore.py from 644 to 755 2025-12-08T19:40:14,965 changing mode of build/scripts-3.9/rna_mq_analyzegeometry.py from 644 to 755 2025-12-08T19:40:14,966 changing mode of build/scripts-3.9/rna_mq_rnakb.py from 644 to 755 2025-12-08T19:40:14,966 changing mode of build/scripts-3.9/rna_mq_rsRNASP.py from 644 to 755 2025-12-08T19:40:14,967 changing mode of build/scripts-3.9/rna_mq_eSCORE.py from 644 to 755 2025-12-08T19:40:14,968 changing mode of build/scripts-3.9/rna_mq_farna.py from 644 to 755 2025-12-08T19:40:14,968 changing mode of build/scripts-3.9/rna_mq_farfar2.py from 644 to 755 2025-12-08T19:40:14,969 changing mode of build/scripts-3.9/rna_mq_simrna.py from 644 to 755 2025-12-08T19:40:14,969 changing mode of build/scripts-3.9/rna_mq_rasp.py from 644 to 755 2025-12-08T19:40:14,970 changing mode of build/scripts-3.9/rna_gromacs_ready.py from 644 to 755 2025-12-08T19:40:14,971 changing mode of build/scripts-3.9/rna_md.py from 644 to 755 2025-12-08T19:40:14,972 changing mode of build/scripts-3.9/rna_minimize.py from 644 to 755 2025-12-08T19:40:14,972 changing mode of build/scripts-3.9/rna_traj_n.py from 644 to 755 2025-12-08T19:40:14,973 changing mode of build/scripts-3.9/rna_traj_range.py from 644 to 755 2025-12-08T19:40:14,974 changing mode of build/scripts-3.9/rna_traj_nohetm.py from 644 to 755 2025-12-08T19:40:14,974 changing mode of build/scripts-3.9/triplexibility.py from 644 to 755 2025-12-08T19:40:14,975 changing mode of build/scripts-3.9/triplexibility2.py from 644 to 755 2025-12-08T19:40:14,976 changing mode of build/scripts-3.9/trx_mutagen_allvsall.py from 644 to 755 2025-12-08T19:40:14,977 changing mode of build/scripts-3.9/trx_mutagen.py from 644 to 755 2025-12-08T19:40:14,977 changing mode of build/scripts-3.9/trx_score_allvsall.py from 644 to 755 2025-12-08T19:40:14,978 changing mode of build/scripts-3.9/trx_score.py from 644 to 755 2025-12-08T19:40:14,979 changing mode of build/scripts-3.9/trx_score_onCol.py from 644 to 755 2025-12-08T19:40:14,979 changing mode of build/scripts-3.9/rna_df_csv_sort.py from 644 to 755 2025-12-08T19:40:14,980 changing mode of build/scripts-3.9/rna_df_concat.py from 644 to 755 2025-12-08T19:40:14,981 changing mode of build/scripts-3.9/rna_df_merge.py from 644 to 755 2025-12-08T19:40:14,981 changing mode of build/scripts-3.9/rna_df_merge_on.py from 644 to 755 2025-12-08T19:40:14,982 changing mode of build/scripts-3.9/rna_df_merge_two.py from 644 to 755 2025-12-08T19:40:14,983 changing mode of build/scripts-3.9/rna_ok_mail.py from 644 to 755 2025-12-08T19:40:14,984 changing mode of build/scripts-3.9/rna_test_cuda.py from 644 to 755 2025-12-08T19:40:14,984 changing mode of build/scripts-3.9/rna_draw_edges.py from 644 to 755 2025-12-08T19:40:14,985 changing mode of build/scripts-3.9/rna_calc_hbonds.py from 644 to 755 2025-12-08T19:40:14,986 changing mode of build/scripts-3.9/rna_pdb_merge_structure_with_fragments.py from 644 to 755 2025-12-08T19:40:14,986 changing mode of build/scripts-3.9/rna_clarna2graph.py from 644 to 755 2025-12-08T19:40:15,091 installing to build/bdist.linux-armv7l/wheel 2025-12-08T19:40:15,092 running install 2025-12-08T19:40:15,143 running install_lib 2025-12-08T19:40:15,188 creating build/bdist.linux-armv7l/wheel 2025-12-08T19:40:15,192 creating build/bdist.linux-armv7l/wheel/rna_tools 2025-12-08T19:40:15,195 copying build/lib/rna_tools/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,199 copying build/lib/rna_tools/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,205 copying build/lib/rna_tools/update_readme.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,209 copying build/lib/rna_tools/rna_torsions.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,212 copying build/lib/rna_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,216 copying build/lib/rna_tools/_version.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,220 creating build/bdist.linux-armv7l/wheel/rna_tools/data 2025-12-08T19:40:15,222 copying build/lib/rna_tools/data/ACGU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,227 copying build/lib/rna_tools/data/o2prim.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,230 copying build/lib/rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,238 copying build/lib/rna_tools/data/G.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,242 copying build/lib/rna_tools/data/pdb_ids.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,245 copying build/lib/rna_tools/data/rna_pdb_errors.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,249 copying build/lib/rna_tools/data/shape.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,252 copying build/lib/rna_tools/data/C.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,256 copying build/lib/rna_tools/data/op4.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,260 copying build/lib/rna_tools/data/PO3_inner.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,263 copying build/lib/rna_tools/data/U.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,266 copying build/lib/rna_tools/data/A.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/data 2025-12-08T19:40:15,270 copying build/lib/rna_tools/BlastPDB.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,273 copying build/lib/rna_tools/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,277 copying build/lib/rna_tools/shell_rc.sh -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,280 copying build/lib/rna_tools/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,283 copying build/lib/rna_tools/SecondaryStructure.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,287 copying build/lib/rna_tools/stats.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,290 copying build/lib/rna_tools/RfamSearch.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,294 copying build/lib/rna_tools/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,298 copying build/lib/rna_tools/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,302 copying build/lib/rna_tools/rna_tools_config.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,306 copying build/lib/rna_tools/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,309 copying build/lib/rna_tools/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,313 copying build/lib/rna_tools/rna_tools_test_all.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,317 copying build/lib/rna_tools/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,320 copying build/lib/rna_tools/rna_tools_lib.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,329 copying build/lib/rna_tools/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,332 copying build/lib/rna_tools/pytest.ini -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,336 copying build/lib/rna_tools/Seq.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,341 copying build/lib/rna_tools/rna_standardize.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:15,348 creating build/bdist.linux-armv7l/wheel/rna_tools/tools 2025-12-08T19:40:15,352 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2025-12-08T19:40:15,354 copying build/lib/rna_tools/tools/rna_calc_gdt/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_gdt 2025-12-08T19:40:15,358 copying build/lib/rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_gdt 2025-12-08T19:40:15,363 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:40:15,364 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:40:15,368 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:40:15,373 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:15,375 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:15,387 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:15,399 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2025-12-08T19:40:15,412 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:40:15,416 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2025-12-08T19:40:15,422 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,424 copying build/lib/rna_tools/tools/simrna_trajectory/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,427 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,430 copying build/lib/rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,435 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,438 copying build/lib/rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,442 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,447 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory/test_data 2025-12-08T19:40:15,449 copying build/lib/rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory/test_data 2025-12-08T19:40:15,460 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,464 copying build/lib/rna_tools/tools/simrna_trajectory/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,468 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,472 copying build/lib/rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,477 copying build/lib/rna_tools/tools/simrna_trajectory/subset.trafl -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/simrna_trajectory 2025-12-08T19:40:15,522 copying build/lib/rna_tools/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools 2025-12-08T19:40:15,527 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:40:15,530 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:40:15,534 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:40:15,539 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdbs_measure_atom_dists 2025-12-08T19:40:15,544 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:15,547 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:15,551 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:15,557 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdbs_measure_atom_dists/test_data 2025-12-08T19:40:15,565 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2025-12-08T19:40:15,568 copying build/lib/rna_tools/tools/ClashCalc/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/ClashCalc 2025-12-08T19:40:15,572 copying build/lib/rna_tools/tools/ClashCalc/ClashCalc.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/ClashCalc 2025-12-08T19:40:15,577 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:15,580 copying build/lib/rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:15,614 copying build/lib/rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:15,665 copying build/lib/rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/ClashCalc/test_data 2025-12-08T19:40:15,699 copying build/lib/rna_tools/tools/ClashCalc/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/ClashCalc 2025-12-08T19:40:15,703 copying build/lib/rna_tools/tools/ClashCalc/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/ClashCalc 2025-12-08T19:40:15,707 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2025-12-08T19:40:15,709 copying build/lib/rna_tools/tools/cluster_load/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/cluster_load 2025-12-08T19:40:15,713 copying build/lib/rna_tools/tools/cluster_load/cluster_load.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/cluster_load 2025-12-08T19:40:15,716 copying build/lib/rna_tools/tools/cluster_load/cluster_mini_free.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/cluster_load 2025-12-08T19:40:15,720 copying build/lib/rna_tools/tools/cluster_load/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/cluster_load 2025-12-08T19:40:15,723 copying build/lib/rna_tools/tools/cluster_load/load -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/cluster_load 2025-12-08T19:40:15,728 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2025-12-08T19:40:15,730 copying build/lib/rna_tools/tools/workflow/pdb_list.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,736 copying build/lib/rna_tools/tools/workflow/rm_less_2k.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,738 copying build/lib/rna_tools/tools/workflow/mass_inf.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,742 copying build/lib/rna_tools/tools/workflow/inf_all.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,746 copying build/lib/rna_tools/tools/workflow/chunker.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,749 copying build/lib/rna_tools/tools/workflow/mqaprna_run.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,764 copying build/lib/rna_tools/tools/workflow/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,767 copying build/lib/rna_tools/tools/workflow/after_peyote_clean.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,771 copying build/lib/rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,775 copying build/lib/rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,779 copying build/lib/rna_tools/tools/workflow/run_1 -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,783 copying build/lib/rna_tools/tools/workflow/evox.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,787 copying build/lib/rna_tools/tools/workflow/clean.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,790 copying build/lib/rna_tools/tools/workflow/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,794 copying build/lib/rna_tools/tools/workflow/run.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,797 copying build/lib/rna_tools/tools/workflow/automatix.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,801 copying build/lib/rna_tools/tools/workflow/rp13_automatix.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,804 copying build/lib/rna_tools/tools/workflow/run -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,810 copying build/lib/rna_tools/tools/workflow/rna_workflow.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,813 copying build/lib/rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,817 copying build/lib/rna_tools/tools/workflow/mqaprna_run copy.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/workflow 2025-12-08T19:40:15,836 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2025-12-08T19:40:15,838 copying build/lib/rna_tools/tools/df/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df 2025-12-08T19:40:15,842 copying build/lib/rna_tools/tools/df/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df 2025-12-08T19:40:15,845 copying build/lib/rna_tools/tools/df/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df 2025-12-08T19:40:15,849 copying build/lib/rna_tools/tools/df/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df 2025-12-08T19:40:15,852 copying build/lib/rna_tools/tools/df/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df 2025-12-08T19:40:15,857 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2025-12-08T19:40:15,859 copying build/lib/rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,862 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,866 copying build/lib/rna_tools/tools/df/test_data/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,870 copying build/lib/rna_tools/tools/df/test_data/min_3.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,873 copying build/lib/rna_tools/tools/df/test_data/d3.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,877 copying build/lib/rna_tools/tools/df/test_data/min_2.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,880 copying build/lib/rna_tools/tools/df/test_data/min_4.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,884 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,888 copying build/lib/rna_tools/tools/df/test_data/cga_rmsd.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,891 copying build/lib/rna_tools/tools/df/test_data/d8.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df/test_data 2025-12-08T19:40:15,895 copying build/lib/rna_tools/tools/df/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/df 2025-12-08T19:40:15,900 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2025-12-08T19:40:15,902 copying build/lib/rna_tools/tools/rnashape2ascii/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnashape2ascii 2025-12-08T19:40:15,907 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2025-12-08T19:40:15,909 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnashape2ascii/test_data 2025-12-08T19:40:15,913 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnashape2ascii/test_data 2025-12-08T19:40:15,917 copying build/lib/rna_tools/tools/rnashape2ascii/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnashape2ascii 2025-12-08T19:40:15,921 copying build/lib/rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnashape2ascii 2025-12-08T19:40:15,924 copying build/lib/rna_tools/tools/rnashape2ascii/LICENSE -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnashape2ascii 2025-12-08T19:40:15,930 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2025-12-08T19:40:15,932 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,936 copying build/lib/rna_tools/tools/rna_filter/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,939 copying build/lib/rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,943 copying build/lib/rna_tools/tools/rna_filter/rna_filter.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,947 copying build/lib/rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,950 copying build/lib/rna_tools/tools/rna_filter/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,954 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,957 copying build/lib/rna_tools/tools/rna_filter/test_dca.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,962 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:15,964 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.trafl -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:15,968 copying build/lib/rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:15,971 copying build/lib/rna_tools/tools/rna_filter/test_data/restraints.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:15,974 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter/test_data 2025-12-08T19:40:15,978 copying build/lib/rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,981 copying build/lib/rna_tools/tools/rna_filter/rna_get_distances.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,986 copying build/lib/rna_tools/tools/rna_filter/rna_get_dists.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,990 copying build/lib/rna_tools/tools/rna_filter/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,994 copying build/lib/rna_tools/tools/rna_filter/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:15,998 copying build/lib/rna_tools/tools/rna_filter/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,001 copying build/lib/rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,006 copying build/lib/rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,009 copying build/lib/rna_tools/tools/rna_filter/pymol_dists.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,013 copying build/lib/rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,016 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,019 copying build/lib/rna_tools/tools/rna_filter/test_rna_filter.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,023 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_filter 2025-12-08T19:40:16,028 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2025-12-08T19:40:16,030 copying build/lib/rna_tools/tools/clanstix/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,035 copying build/lib/rna_tools/tools/clanstix/test2.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,039 copying build/lib/rna_tools/tools/clanstix/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,042 copying build/lib/rna_tools/tools/clanstix/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,045 copying build/lib/rna_tools/tools/clanstix/colors.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,050 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,052 copying build/lib/rna_tools/tools/clanstix/test_data/matrix.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,056 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,061 copying build/lib/rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,093 copying build/lib/rna_tools/tools/clanstix/test_data/gmp.clans -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,104 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,125 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:16,127 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:16,140 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:16,144 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:16,159 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:16,167 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data/rp17_del 2025-12-08T19:40:16,277 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,289 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,296 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/test_data 2025-12-08T19:40:16,305 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2025-12-08T19:40:16,307 copying build/lib/rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/doc 2025-12-08T19:40:16,367 copying build/lib/rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/doc 2025-12-08T19:40:16,373 copying build/lib/rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix/doc 2025-12-08T19:40:16,383 copying build/lib/rna_tools/tools/clanstix/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,387 copying build/lib/rna_tools/tools/clanstix/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,392 copying build/lib/rna_tools/tools/clanstix/test3.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,396 copying build/lib/rna_tools/tools/clanstix/LICENSE -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clanstix 2025-12-08T19:40:16,405 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2025-12-08T19:40:16,408 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2025-12-08T19:40:16,413 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:16,416 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:16,421 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:16,425 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2025-12-08T19:40:16,429 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2025-12-08T19:40:16,435 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:40:16,437 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:40:16,440 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:40:16,446 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:16,448 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:16,454 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:16,461 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2025-12-08T19:40:16,469 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_pdb_merge_structure_with_fragments 2025-12-08T19:40:16,473 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:16,475 copying build/lib/rna_tools/tools/rna_binding_affinity/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:16,479 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:16,482 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:16,486 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:16,489 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:16,492 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_binding_affinity 2025-12-08T19:40:16,497 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox 2025-12-08T19:40:16,500 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2025-12-08T19:40:16,502 copying build/lib/rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/sandbox/rna_compare 2025-12-08T19:40:16,507 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2025-12-08T19:40:16,509 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/sandbox/rna_compare/test_data 2025-12-08T19:40:16,519 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/sandbox/rna_compare/test_data 2025-12-08T19:40:16,529 copying build/lib/rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/sandbox/rna_compare 2025-12-08T19:40:16,534 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2025-12-08T19:40:16,536 copying build/lib/rna_tools/tools/diffpdb/diffpdb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb 2025-12-08T19:40:16,540 copying build/lib/rna_tools/tools/diffpdb/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb 2025-12-08T19:40:16,544 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/output 2025-12-08T19:40:16,546 copying build/lib/rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/output 2025-12-08T19:40:16,551 copying build/lib/rna_tools/tools/diffpdb/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb 2025-12-08T19:40:16,556 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,558 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,569 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,574 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2025-12-08T19:40:16,576 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/1 2025-12-08T19:40:16,587 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/1 2025-12-08T19:40:16,598 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,607 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,612 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2025-12-08T19:40:16,614 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/4 2025-12-08T19:40:16,621 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/4 2025-12-08T19:40:16,628 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2025-12-08T19:40:16,629 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/2 2025-12-08T19:40:16,633 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/2 2025-12-08T19:40:16,637 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,646 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2025-12-08T19:40:16,648 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/3.ident 2025-12-08T19:40:16,652 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data/3.ident 2025-12-08T19:40:16,655 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,660 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,669 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,674 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,678 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/test_data 2025-12-08T19:40:16,683 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2025-12-08T19:40:16,685 copying build/lib/rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/doc 2025-12-08T19:40:16,698 copying build/lib/rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/doc 2025-12-08T19:40:16,712 copying build/lib/rna_tools/tools/diffpdb/doc/atom-variants.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/doc 2025-12-08T19:40:16,717 copying build/lib/rna_tools/tools/diffpdb/doc/missing-op3.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/doc 2025-12-08T19:40:16,729 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot2.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/doc 2025-12-08T19:40:16,740 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/doc 2025-12-08T19:40:16,750 copying build/lib/rna_tools/tools/diffpdb/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb 2025-12-08T19:40:16,754 copying build/lib/rna_tools/tools/diffpdb/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb 2025-12-08T19:40:16,760 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/lib 2025-12-08T19:40:16,762 copying build/lib/rna_tools/tools/diffpdb/lib/diff2html.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/diffpdb/lib 2025-12-08T19:40:16,768 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2025-12-08T19:40:16,770 copying build/lib/rna_tools/tools/extra_functions/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/extra_functions 2025-12-08T19:40:16,773 copying build/lib/rna_tools/tools/extra_functions/select_fragment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/extra_functions 2025-12-08T19:40:16,777 copying build/lib/rna_tools/tools/extra_functions/gen_numbering.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/extra_functions 2025-12-08T19:40:16,780 copying build/lib/rna_tools/tools/extra_functions/numbering.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/extra_functions 2025-12-08T19:40:16,786 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2025-12-08T19:40:16,789 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2025-12-08T19:40:16,791 copying build/lib/rna_tools/tools/mq/eSCORE/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/eSCORE 2025-12-08T19:40:16,794 copying build/lib/rna_tools/tools/mq/eSCORE/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/eSCORE 2025-12-08T19:40:16,799 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE/test 2025-12-08T19:40:16,801 copying build/lib/rna_tools/tools/mq/eSCORE/test/escore.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/eSCORE/test 2025-12-08T19:40:16,805 copying build/lib/rna_tools/tools/mq/eSCORE/eSCORE.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/eSCORE 2025-12-08T19:40:16,809 copying build/lib/rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/eSCORE 2025-12-08T19:40:16,812 copying build/lib/rna_tools/tools/mq/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:16,816 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2025-12-08T19:40:16,818 copying build/lib/rna_tools/tools/mq/FARFAR2/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2 2025-12-08T19:40:16,821 copying build/lib/rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2 2025-12-08T19:40:16,827 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:16,829 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:16,833 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:16,836 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:16,840 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:16,843 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2/test_output 2025-12-08T19:40:16,847 copying build/lib/rna_tools/tools/mq/FARFAR2/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2 2025-12-08T19:40:16,850 copying build/lib/rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARFAR2 2025-12-08T19:40:16,855 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:40:16,857 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:40:16,860 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:40:16,864 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:40:16,867 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/AnalyzeGeometry 2025-12-08T19:40:16,871 copying build/lib/rna_tools/tools/mq/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:16,876 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2025-12-08T19:40:16,878 copying build/lib/rna_tools/tools/mq/ClashScore/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/ClashScore 2025-12-08T19:40:16,881 copying build/lib/rna_tools/tools/mq/ClashScore/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/ClashScore 2025-12-08T19:40:16,884 copying build/lib/rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/ClashScore 2025-12-08T19:40:16,888 copying build/lib/rna_tools/tools/mq/ClashScore/ClashScore.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/ClashScore 2025-12-08T19:40:16,893 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2025-12-08T19:40:16,895 copying build/lib/rna_tools/tools/mq/Dfire/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/Dfire 2025-12-08T19:40:16,898 copying build/lib/rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/Dfire 2025-12-08T19:40:16,902 copying build/lib/rna_tools/tools/mq/Dfire/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/Dfire 2025-12-08T19:40:16,906 copying build/lib/rna_tools/tools/mq/Dfire/test.output -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/Dfire 2025-12-08T19:40:16,909 copying build/lib/rna_tools/tools/mq/Dfire/Dfire.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/Dfire 2025-12-08T19:40:16,914 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2025-12-08T19:40:16,916 copying build/lib/rna_tools/tools/mq/rsRNASP/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/rsRNASP 2025-12-08T19:40:16,920 copying build/lib/rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/rsRNASP 2025-12-08T19:40:16,923 copying build/lib/rna_tools/tools/mq/rsRNASP/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/rsRNASP 2025-12-08T19:40:16,927 copying build/lib/rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/rsRNASP 2025-12-08T19:40:16,932 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2025-12-08T19:40:16,934 copying build/lib/rna_tools/tools/mq/RASP/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP 2025-12-08T19:40:16,938 copying build/lib/rna_tools/tools/mq/RASP/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP 2025-12-08T19:40:16,941 copying build/lib/rna_tools/tools/mq/RASP/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP 2025-12-08T19:40:16,944 copying build/lib/rna_tools/tools/mq/RASP/RASP.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP 2025-12-08T19:40:16,950 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,952 copying build/lib/rna_tools/tools/mq/RASP/test/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,956 copying build/lib/rna_tools/tools/mq/RASP/test/test.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,960 copying build/lib/rna_tools/tools/mq/RASP/test/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,964 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,974 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,984 copying build/lib/rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,988 copying build/lib/rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:16,997 copying build/lib/rna_tools/tools/mq/RASP/test/mq.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP/test 2025-12-08T19:40:17,000 copying build/lib/rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP 2025-12-08T19:40:17,004 copying build/lib/rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RASP 2025-12-08T19:40:17,008 copying build/lib/rna_tools/tools/mq/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,012 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2025-12-08T19:40:17,014 copying build/lib/rna_tools/tools/mq/SimRNA/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/SimRNA 2025-12-08T19:40:17,018 copying build/lib/rna_tools/tools/mq/SimRNA/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/SimRNA 2025-12-08T19:40:17,022 copying build/lib/rna_tools/tools/mq/SimRNA/SimRNA.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/SimRNA 2025-12-08T19:40:17,027 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:17,030 copying build/lib/rna_tools/tools/mq/SimRNA/test/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:17,033 copying build/lib/rna_tools/tools/mq/SimRNA/test/output.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:17,037 copying build/lib/rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/SimRNA/test 2025-12-08T19:40:17,042 copying build/lib/rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/SimRNA 2025-12-08T19:40:17,048 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:17,050 copying build/lib/rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:17,053 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:17,056 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.output -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:17,060 copying build/lib/rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:17,064 copying build/lib/rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNA3DCNN 2025-12-08T19:40:17,067 copying build/lib/rna_tools/tools/mq/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,072 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2025-12-08T19:40:17,074 copying build/lib/rna_tools/tools/mq/QRNAS/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS 2025-12-08T19:40:17,077 copying build/lib/rna_tools/tools/mq/QRNAS/QRNAS.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS 2025-12-08T19:40:17,081 copying build/lib/rna_tools/tools/mq/QRNAS/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS 2025-12-08T19:40:17,086 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:17,088 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:17,092 copying build/lib/rna_tools/tools/mq/QRNAS/test/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:17,095 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.output -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:17,099 copying build/lib/rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:17,105 copying build/lib/rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/QRNAS/test 2025-12-08T19:40:17,117 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2025-12-08T19:40:17,119 copying build/lib/rna_tools/tools/mq/RNAscore/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAscore 2025-12-08T19:40:17,122 copying build/lib/rna_tools/tools/mq/RNAscore/RNAscore.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAscore 2025-12-08T19:40:17,126 copying build/lib/rna_tools/tools/mq/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,132 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2025-12-08T19:40:17,134 copying build/lib/rna_tools/tools/mq/test/dfire.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,138 copying build/lib/rna_tools/tools/mq/test/1xjrA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,146 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,151 copying build/lib/rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,157 copying build/lib/rna_tools/tools/mq/test/test2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,166 copying build/lib/rna_tools/tools/mq/test/all.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,171 copying build/lib/rna_tools/tools/mq/test/6TNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,187 copying build/lib/rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,194 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,200 copying build/lib/rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,208 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,213 copying build/lib/rna_tools/tools/mq/test/test.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,220 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,224 copying build/lib/rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,234 copying build/lib/rna_tools/tools/mq/test/1zhoH.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,242 copying build/lib/rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,251 copying build/lib/rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,262 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,267 copying build/lib/rna_tools/tools/mq/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,274 copying build/lib/rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,279 copying build/lib/rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,288 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,293 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/test 2025-12-08T19:40:17,297 copying build/lib/rna_tools/tools/mq/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,301 copying build/lib/rna_tools/tools/mq/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,306 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2025-12-08T19:40:17,308 copying build/lib/rna_tools/tools/mq/RNAkb/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb 2025-12-08T19:40:17,311 copying build/lib/rna_tools/tools/mq/RNAkb/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb 2025-12-08T19:40:17,315 copying build/lib/rna_tools/tools/mq/RNAkb/RNAkb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb 2025-12-08T19:40:17,321 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,323 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,333 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,338 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,592 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,597 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,602 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,607 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,612 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,617 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,624 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,629 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,636 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,642 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,647 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,652 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,655 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb/test_data 2025-12-08T19:40:17,661 copying build/lib/rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/RNAkb 2025-12-08T19:40:17,666 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp 2025-12-08T19:40:17,670 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2025-12-08T19:40:17,672 copying build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2025-12-08T19:40:17,676 copying build/lib/rna_tools/tools/mq/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,682 copying build/lib/rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,688 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib 2025-12-08T19:40:17,690 copying build/lib/rna_tools/tools/mq/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib 2025-12-08T19:40:17,694 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2025-12-08T19:40:17,697 copying build/lib/rna_tools/tools/mq/lib/wrappers/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/wrappers 2025-12-08T19:40:17,700 copying build/lib/rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/wrappers 2025-12-08T19:40:17,705 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2025-12-08T19:40:17,708 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/wrappers/test 2025-12-08T19:40:17,711 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/wrappers/test 2025-12-08T19:40:17,714 copying build/lib/rna_tools/tools/mq/lib/wrappers/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/wrappers 2025-12-08T19:40:17,718 copying build/lib/rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/wrappers 2025-12-08T19:40:17,723 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2025-12-08T19:40:17,725 copying build/lib/rna_tools/tools/mq/lib/timex/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/timex 2025-12-08T19:40:17,729 copying build/lib/rna_tools/tools/mq/lib/timex/timex.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/timex 2025-12-08T19:40:17,732 copying build/lib/rna_tools/tools/mq/lib/timex/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/timex 2025-12-08T19:40:17,736 copying build/lib/rna_tools/tools/mq/lib/timex/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/timex 2025-12-08T19:40:17,739 copying build/lib/rna_tools/tools/mq/lib/timex/LICENSE -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/timex 2025-12-08T19:40:17,747 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:17,749 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:17,753 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:17,756 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:17,761 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:17,764 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/lib/shellgraphics 2025-12-08T19:40:17,771 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2025-12-08T19:40:17,773 copying build/lib/rna_tools/tools/mq/FARNA/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARNA 2025-12-08T19:40:17,777 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:17,779 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:17,783 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:17,787 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARNA/test_output 2025-12-08T19:40:17,790 copying build/lib/rna_tools/tools/mq/FARNA/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARNA 2025-12-08T19:40:17,793 copying build/lib/rna_tools/tools/mq/FARNA/FARNA.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARNA 2025-12-08T19:40:17,797 copying build/lib/rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq/FARNA 2025-12-08T19:40:17,801 copying build/lib/rna_tools/tools/mq/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mq 2025-12-08T19:40:17,808 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2025-12-08T19:40:17,810 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,813 copying build/lib/rna_tools/tools/rna_alignment/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,817 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,821 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2025-12-08T19:40:17,823 copying build/lib/rna_tools/tools/rna_alignment/pngs/rscape.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/pngs 2025-12-08T19:40:17,829 copying build/lib/rna_tools/tools/rna_alignment/pngs/rchie.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/pngs 2025-12-08T19:40:17,838 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,868 copying build/lib/rna_tools/tools/rna_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,871 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,875 copying build/lib/rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,879 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:17,881 copying build/lib/rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:17,885 copying build/lib/rna_tools/tools/rna_alignment/test_output/subset.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:17,889 copying build/lib/rna_tools/tools/rna_alignment/test_output/plot.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:17,897 copying build/lib/rna_tools/tools/rna_alignment/test_output/out.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:17,900 copying build/lib/rna_tools/tools/rna_alignment/test_output/mini.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:17,904 copying build/lib/rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_output 2025-12-08T19:40:17,907 copying build/lib/rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,912 copying build/lib/rna_tools/tools/rna_alignment/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,915 copying build/lib/rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,919 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,922 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:17,931 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,933 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,938 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:17,940 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:17,944 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:17,947 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:17,951 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:17,954 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data/rchie_test_files 2025-12-08T19:40:17,958 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,965 copying build/lib/rna_tools/tools/rna_alignment/test_data/target.seq -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,969 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,972 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,980 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,985 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,991 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,995 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:17,998 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,003 copying build/lib/rna_tools/tools/rna_alignment/test_data/xx.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,006 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,009 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,013 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,017 copying build/lib/rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,023 copying build/lib/rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,034 copying build/lib/rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,040 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/foldability 2025-12-08T19:40:18,042 copying build/lib/rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data/foldability 2025-12-08T19:40:18,070 copying build/lib/rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,080 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,084 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,104 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,107 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,111 copying build/lib/rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,114 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,121 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,124 copying build/lib/rna_tools/tools/rna_alignment/test_data/af27.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/test_data 2025-12-08T19:40:18,128 copying build/lib/rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:18,134 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,136 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,140 copying build/lib/rna_tools/tools/rna_alignment/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,143 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,147 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,152 copying build/lib/rna_tools/tools/rna_alignment/utils/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,156 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,160 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,165 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,167 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,171 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,174 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,178 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,182 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,185 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,189 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils/test_data 2025-12-08T19:40:18,192 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,196 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,199 copying build/lib/rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,203 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,207 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment/utils 2025-12-08T19:40:18,210 copying build/lib/rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:18,214 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:18,249 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:19,009 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:19,013 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:19,017 copying build/lib/rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:19,021 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:19,024 copying build/lib/rna_tools/tools/rna_alignment/test_rchie.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_alignment 2025-12-08T19:40:19,029 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2025-12-08T19:40:19,031 copying build/lib/rna_tools/tools/rna_helix_vis/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_helix_vis 2025-12-08T19:40:19,036 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2025-12-08T19:40:19,038 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_helix_vis/test_data 2025-12-08T19:40:19,042 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_helix_vis/test_data 2025-12-08T19:40:19,054 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/doc 2025-12-08T19:40:19,057 copying build/lib/rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_helix_vis/doc 2025-12-08T19:40:19,068 copying build/lib/rna_tools/tools/rna_helix_vis/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_helix_vis 2025-12-08T19:40:19,071 copying build/lib/rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_helix_vis 2025-12-08T19:40:19,077 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:40:19,078 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:40:19,081 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:40:19,085 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd_trafl 2025-12-08T19:40:19,090 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2025-12-08T19:40:19,092 copying build/lib/rna_tools/tools/rna_x3dna/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna 2025-12-08T19:40:19,096 copying build/lib/rna_tools/tools/rna_x3dna/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna 2025-12-08T19:40:19,099 copying build/lib/rna_tools/tools/rna_x3dna/readme.rst -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna 2025-12-08T19:40:19,104 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:19,106 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:19,117 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:19,120 copying build/lib/rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:19,135 copying build/lib/rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:19,148 copying build/lib/rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna/test_data 2025-12-08T19:40:19,152 copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_x3dna 2025-12-08T19:40:19,158 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2025-12-08T19:40:19,160 copying build/lib/rna_tools/tools/md/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,164 copying build/lib/rna_tools/tools/md/rnakb_utils.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,169 copying build/lib/rna_tools/tools/md/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,172 copying build/lib/rna_tools/tools/md/rna_md.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,176 copying build/lib/rna_tools/tools/md/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,179 copying build/lib/rna_tools/tools/md/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,184 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/data 2025-12-08T19:40:19,186 copying build/lib/rna_tools/tools/md/data/rnakb_all.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/data 2025-12-08T19:40:19,194 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2025-12-08T19:40:19,196 copying build/lib/rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_output 2025-12-08T19:40:19,203 copying build/lib/rna_tools/tools/md/test_output/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_output 2025-12-08T19:40:19,207 copying build/lib/rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_output 2025-12-08T19:40:19,214 copying build/lib/rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_output 2025-12-08T19:40:19,219 copying build/lib/rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_output 2025-12-08T19:40:19,226 copying build/lib/rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_output 2025-12-08T19:40:19,231 copying build/lib/rna_tools/tools/md/rna_minimize.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,236 copying build/lib/rna_tools/tools/md/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,240 copying build/lib/rna_tools/tools/md/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,246 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2025-12-08T19:40:19,248 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,254 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,259 copying build/lib/rna_tools/tools/md/test_data/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,264 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,270 copying build/lib/rna_tools/tools/md/test_data/groups.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,274 copying build/lib/rna_tools/tools/md/test_data/3nt.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,279 copying build/lib/rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,286 copying build/lib/rna_tools/tools/md/test_data/1duq -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,289 copying build/lib/rna_tools/tools/md/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,296 copying build/lib/rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,304 copying build/lib/rna_tools/tools/md/test_data/temp.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,309 copying build/lib/rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,315 copying build/lib/rna_tools/tools/md/test_data/3nt_edited.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md/test_data 2025-12-08T19:40:19,319 copying build/lib/rna_tools/tools/md/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,323 copying build/lib/rna_tools/tools/md/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,328 copying build/lib/rna_tools/tools/md/out.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,332 copying build/lib/rna_tools/tools/md/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,336 copying build/lib/rna_tools/tools/md/rna_get_energy.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/md 2025-12-08T19:40:19,341 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,343 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,347 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,350 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,354 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,356 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,360 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,363 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,367 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,385 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,405 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,431 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,435 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,438 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,442 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd/test_data 2025-12-08T19:40:19,470 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,475 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,479 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,483 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,487 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_evo_rmsd 2025-12-08T19:40:19,493 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,495 copying build/lib/rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,499 copying build/lib/rna_tools/tools/rna_calc_hbonds/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,504 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/docs 2025-12-08T19:40:19,506 copying build/lib/rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/docs 2025-12-08T19:40:19,529 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,531 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,536 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,539 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,543 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,548 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,551 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,558 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,562 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,566 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,570 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,573 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,577 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds/test_data 2025-12-08T19:40:19,581 copying build/lib/rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,585 copying build/lib/rna_tools/tools/rna_calc_hbonds/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,588 copying build/lib/rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,592 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,595 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_hbonds 2025-12-08T19:40:19,601 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2025-12-08T19:40:19,603 copying build/lib/rna_tools/tools/triplexibility/triplexibility.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,608 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,611 copying build/lib/rna_tools/tools/triplexibility/trx_score_growth.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,616 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/db 2025-12-08T19:40:19,618 copying build/lib/rna_tools/tools/triplexibility/db/gendb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility/db 2025-12-08T19:40:19,624 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2025-12-08T19:40:19,626 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility/data 2025-12-08T19:40:19,630 copying build/lib/rna_tools/tools/triplexibility/data/db_trx2.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility/data 2025-12-08T19:40:19,634 copying build/lib/rna_tools/tools/triplexibility/data/db.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility/data 2025-12-08T19:40:19,638 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility/data 2025-12-08T19:40:19,642 copying build/lib/rna_tools/tools/triplexibility/data/XcWWX.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility/data 2025-12-08T19:40:19,645 copying build/lib/rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility/data 2025-12-08T19:40:19,649 copying build/lib/rna_tools/tools/triplexibility/lib.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,653 copying build/lib/rna_tools/tools/triplexibility/triple-db.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,695 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,698 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,702 copying build/lib/rna_tools/tools/triplexibility/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,705 copying build/lib/rna_tools/tools/triplexibility/download-all-triples.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,709 copying build/lib/rna_tools/tools/triplexibility/splix.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,712 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,716 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,719 copying build/lib/rna_tools/tools/triplexibility/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,723 copying build/lib/rna_tools/tools/triplexibility/download-all.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,726 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,730 copying build/lib/rna_tools/tools/triplexibility/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,733 copying build/lib/rna_tools/tools/triplexibility/triplexibility2.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,737 copying build/lib/rna_tools/tools/triplexibility/process_triple.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,741 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,745 copying build/lib/rna_tools/tools/triplexibility/trx_score.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,749 copying build/lib/rna_tools/tools/triplexibility/trx.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,754 copying build/lib/rna_tools/tools/triplexibility/download-all-pdbs.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,757 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,761 copying build/lib/rna_tools/tools/triplexibility/test_all.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,765 copying build/lib/rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,768 copying build/lib/rna_tools/tools/triplexibility/trx.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/triplexibility 2025-12-08T19:40:19,773 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,775 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,780 copying build/lib/rna_tools/tools/rna_rosetta/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,783 copying build/lib/rna_tools/tools/rna_rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,786 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,790 copying build/lib/rna_tools/tools/rna_rosetta/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,793 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,797 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,800 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,804 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:19,810 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,812 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,821 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,824 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,835 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,873 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,893 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,902 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,905 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,917 copying build/lib/rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:19,927 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,929 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,933 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,936 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,939 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,943 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,982 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,985 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,989 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,992 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,996 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data/tl 2025-12-08T19:40:19,999 copying build/lib/rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:20,004 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:20,043 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta/test_data 2025-12-08T19:40:20,047 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,050 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,054 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,057 copying build/lib/rna_tools/tools/rna_rosetta/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,061 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,064 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,068 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,071 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rosetta 2025-12-08T19:40:20,077 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:40:20,079 copying build/lib/rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:40:20,083 copying build/lib/rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:40:20,086 copying build/lib/rna_tools/tools/rna_sali2dotbracket/README.MD -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_sali2dotbracket 2025-12-08T19:40:20,091 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2025-12-08T19:40:20,093 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_sali2dotbracket/test_data 2025-12-08T19:40:20,110 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_sali2dotbracket/test_data 2025-12-08T19:40:20,129 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2025-12-08T19:40:20,131 copying build/lib/rna_tools/tools/rna_bp/base_pair.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_bp 2025-12-08T19:40:20,135 copying build/lib/rna_tools/tools/rna_bp/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_bp 2025-12-08T19:40:20,139 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2025-12-08T19:40:20,141 copying build/lib/rna_tools/tools/pymol_drawing/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_drawing 2025-12-08T19:40:20,146 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:20,148 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:20,154 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:20,163 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_drawing/docs 2025-12-08T19:40:20,171 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/test_data 2025-12-08T19:40:20,173 copying build/lib/rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_drawing/test_data 2025-12-08T19:40:20,178 copying build/lib/rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_drawing 2025-12-08T19:40:20,181 copying build/lib/rna_tools/tools/pymol_drawing/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_drawing 2025-12-08T19:40:20,186 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2025-12-08T19:40:20,188 copying build/lib/rna_tools/tools/rna_get_restraints/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_get_restraints 2025-12-08T19:40:20,192 copying build/lib/rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_get_restraints 2025-12-08T19:40:20,195 copying build/lib/rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_get_restraints 2025-12-08T19:40:20,199 copying build/lib/rna_tools/tools/rna_get_restraints/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_get_restraints 2025-12-08T19:40:20,202 copying build/lib/rna_tools/tools/rna_get_restraints/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_get_restraints 2025-12-08T19:40:20,207 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,209 copying build/lib/rna_tools/tools/rna_seq_identity/RF03167.cm -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,216 copying build/lib/rna_tools/tools/rna_seq_identity/seq2.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,220 copying build/lib/rna_tools/tools/rna_seq_identity/pairwase.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,224 copying build/lib/rna_tools/tools/rna_seq_identity/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,227 copying build/lib/rna_tools/tools/rna_seq_identity/seq12.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,231 copying build/lib/rna_tools/tools/rna_seq_identity/seq1.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,234 copying build/lib/rna_tools/tools/rna_seq_identity/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,238 copying build/lib/rna_tools/tools/rna_seq_identity/output.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_seq_identity 2025-12-08T19:40:20,242 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2025-12-08T19:40:20,244 copying build/lib/rna_tools/tools/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting 2025-12-08T19:40:20,248 copying build/lib/rna_tools/tools/plotting/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting 2025-12-08T19:40:20,251 copying build/lib/rna_tools/tools/plotting/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting 2025-12-08T19:40:20,255 copying build/lib/rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting 2025-12-08T19:40:20,260 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2025-12-08T19:40:20,262 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting/test_data 2025-12-08T19:40:20,267 copying build/lib/rna_tools/tools/plotting/test_data/rmsds.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting/test_data 2025-12-08T19:40:20,272 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting/test_data 2025-12-08T19:40:20,276 copying build/lib/rna_tools/tools/plotting/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting 2025-12-08T19:40:20,280 copying build/lib/rna_tools/tools/plotting/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting 2025-12-08T19:40:20,283 copying build/lib/rna_tools/tools/plotting/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/plotting 2025-12-08T19:40:20,288 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:20,291 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,293 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,305 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,315 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,326 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,338 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,348 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,359 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,368 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,379 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,390 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/files 2025-12-08T19:40:20,406 copying build/lib/rna_tools/tools/rnapuzzle_sender/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:20,409 copying build/lib/rna_tools/tools/rnapuzzle_sender/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:20,412 copying build/lib/rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender 2025-12-08T19:40:20,417 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:20,419 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:20,446 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:20,463 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:20,672 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:20,799 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rnapuzzle_sender/test_of_email_content 2025-12-08T19:40:20,818 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2025-12-08T19:40:20,820 copying build/lib/rna_tools/tools/proteins/calc_distances.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/proteins 2025-12-08T19:40:20,825 copying build/lib/rna_tools/tools/proteins/1djf.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/proteins 2025-12-08T19:40:20,831 copying build/lib/rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/proteins 2025-12-08T19:40:20,836 copying build/lib/rna_tools/tools/proteins/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/proteins 2025-12-08T19:40:20,842 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:20,845 copying build/lib/rna_tools/tools/rna_calc_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:20,850 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2025-12-08T19:40:20,852 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_output 2025-12-08T19:40:20,855 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_output 2025-12-08T19:40:20,859 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:20,863 copying build/lib/rna_tools/tools/rna_calc_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:20,867 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:20,872 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,874 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,878 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,888 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,897 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,901 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,904 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,909 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2025-12-08T19:40:20,912 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:20,914 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:20,923 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:20,931 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:20,941 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2025-12-08T19:40:20,949 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/pistol 2025-12-08T19:40:20,959 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,962 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,966 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,985 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,989 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:20,993 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets 2025-12-08T19:40:20,997 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:20,999 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:21,008 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:21,017 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:21,020 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:21,028 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:21,038 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:21,046 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:21,055 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2025-12-08T19:40:21,063 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:21,072 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2025-12-08T19:40:21,082 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:21,084 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:21,108 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2025-12-08T19:40:21,110 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2025-12-08T19:40:21,146 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2025-12-08T19:40:21,170 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:21,174 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2025-12-08T19:40:21,196 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:21,207 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:21,212 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,214 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,218 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,226 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,230 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,238 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,241 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,246 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,249 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data/ways 2025-12-08T19:40:21,253 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:21,262 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/test_data 2025-12-08T19:40:21,266 copying build/lib/rna_tools/tools/rna_calc_rmsd/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:21,271 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:21,276 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:21,280 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd 2025-12-08T19:40:21,284 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib 2025-12-08T19:40:21,286 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib 2025-12-08T19:40:21,291 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:21,293 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:21,298 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:21,300 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:21,306 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:21,310 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:21,313 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:21,319 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:21,323 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2025-12-08T19:40:21,326 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:21,329 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:21,333 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:21,336 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:21,340 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_rmsd/lib/rmsd 2025-12-08T19:40:21,346 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2025-12-08T19:40:21,348 copying build/lib/rna_tools/tools/misc/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,352 copying build/lib/rna_tools/tools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,354 copying build/lib/rna_tools/tools/misc/rna_topdb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,358 copying build/lib/rna_tools/tools/misc/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,361 copying build/lib/rna_tools/tools/misc/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,365 copying build/lib/rna_tools/tools/misc/rna_remote_run.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,368 copying build/lib/rna_tools/tools/misc/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,372 copying build/lib/rna_tools/tools/misc/reverse.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,375 copying build/lib/rna_tools/tools/misc/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,379 copying build/lib/rna_tools/tools/misc/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,382 copying build/lib/rna_tools/tools/misc/translate.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,386 copying build/lib/rna_tools/tools/misc/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,389 copying build/lib/rna_tools/tools/misc/rna_ok -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/misc 2025-12-08T19:40:21,394 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:21,396 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:21,399 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:21,402 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:21,407 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:21,409 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:21,413 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:21,416 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:21,420 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2025-12-08T19:40:21,424 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2025-12-08T19:40:21,426 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats/doc 2025-12-08T19:40:21,436 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:21,440 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_convert_pseudoknot_formats 2025-12-08T19:40:21,445 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2025-12-08T19:40:21,447 copying build/lib/rna_tools/tools/mini_moderna3/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:21,452 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:21,455 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,458 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,463 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,466 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,469 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,473 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,478 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,481 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/builder 2025-12-08T19:40:21,485 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:21,489 copying build/lib/rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:21,492 copying build/lib/rna_tools/tools/mini_moderna3/moderna/_version.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:21,497 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:21,502 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Template.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:21,506 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:21,511 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2025-12-08T19:40:21,513 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/examples 2025-12-08T19:40:21,516 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/examples 2025-12-08T19:40:21,522 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:21,524 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:21,528 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:21,533 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:21,538 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:21,544 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,547 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,550 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,554 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,558 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,562 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,565 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,569 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,573 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,576 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,580 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,583 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,587 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,590 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,594 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,598 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,601 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,605 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,609 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,612 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,616 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,619 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,623 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,627 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,630 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,634 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,637 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,641 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,644 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,648 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,651 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,655 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,659 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,662 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,666 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,670 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,673 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,678 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,681 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,685 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,688 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,692 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,696 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,699 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,703 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,707 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,710 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,714 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,717 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,721 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,725 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,729 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,732 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,737 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,741 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,745 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,749 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,753 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,758 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,762 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,767 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,771 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,776 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,781 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,785 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,790 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,796 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,800 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,805 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,809 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,814 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2025-12-08T19:40:21,818 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:21,823 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:21,839 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,842 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,846 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,851 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,855 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,860 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,864 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,869 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,874 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,878 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,882 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,887 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,892 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,896 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,901 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,905 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,911 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,915 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,919 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,924 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,928 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,933 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,938 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,942 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,949 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,954 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,959 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,963 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,968 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,972 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,977 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,981 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,986 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,991 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,995 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:21,999 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,003 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,007 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,010 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,014 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,018 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,021 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,025 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,029 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,032 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,036 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,040 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,043 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,047 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,051 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,054 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,058 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,062 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,066 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,069 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,073 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,077 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,080 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,084 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,087 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,091 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,095 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,098 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,102 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,106 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,109 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,113 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,117 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,120 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,124 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,127 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,131 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,135 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,139 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,142 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,146 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,150 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,154 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,158 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,161 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,165 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,169 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,173 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,177 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,180 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,184 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,188 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,192 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,195 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,199 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,203 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,207 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,210 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,214 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,217 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,221 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,224 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,228 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,232 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,236 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,239 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,243 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,247 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,250 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,254 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,257 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,261 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,264 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,268 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,272 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,275 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,279 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,283 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,286 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,290 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,294 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,297 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,301 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,304 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,308 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,312 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,315 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,319 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,322 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,326 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,330 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,333 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,337 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,341 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,344 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,348 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,351 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,355 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,359 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,362 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,366 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,370 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,374 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,377 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,381 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,385 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,389 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,392 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,396 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,400 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,404 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,407 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,411 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,414 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,418 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,422 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,425 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,429 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,433 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,436 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,440 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,443 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,447 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,451 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,455 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,458 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,462 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,466 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,469 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,473 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,477 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,480 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,484 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,488 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,491 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,495 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,499 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,502 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,506 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,509 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,513 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,517 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,520 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,524 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,527 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,531 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,535 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,539 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,542 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,546 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,549 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,553 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,557 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,560 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,564 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,569 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,572 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,576 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,579 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,583 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,587 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,590 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,594 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,597 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,601 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,605 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,609 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,612 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,616 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,620 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,623 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,627 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,631 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,635 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,638 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,642 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,646 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,650 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,654 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,658 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,662 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,666 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,669 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,673 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2025-12-08T19:40:22,677 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,681 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,684 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,688 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,691 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,695 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,699 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,702 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,706 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,710 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,713 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,717 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,722 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,726 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,731 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2025-12-08T19:40:22,735 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:22,747 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:22,751 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:22,757 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:22,764 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:22,768 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:22,776 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:22,778 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:22,782 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:22,785 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:22,789 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:22,792 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2025-12-08T19:40:22,796 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/data 2025-12-08T19:40:22,801 copying build/lib/rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:22,807 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:40:22,809 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:40:22,812 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:40:22,817 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:40:22,822 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:40:22,826 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/fragment_library 2025-12-08T19:40:22,831 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:40:22,833 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:40:22,837 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:40:22,841 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:40:22,845 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:40:22,849 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:40:22,852 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/modifications 2025-12-08T19:40:22,856 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:22,860 copying build/lib/rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:22,864 copying build/lib/rna_tools/tools/mini_moderna3/moderna/commands.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:22,872 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:40:22,874 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:40:22,877 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:40:22,881 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:40:22,885 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/isosteric 2025-12-08T19:40:22,889 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:22,893 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:22,899 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,901 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,905 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,910 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,913 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,917 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,923 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,926 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,931 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,936 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,940 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,944 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,948 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,952 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,957 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:22,963 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:22,964 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:22,970 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:22,974 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:22,980 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:22,982 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:22,987 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:22,994 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:23,001 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2025-12-08T19:40:23,007 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:23,012 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:23,016 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:23,020 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:23,025 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:23,029 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze/suites 2025-12-08T19:40:23,034 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:23,038 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:23,041 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/analyze 2025-12-08T19:40:23,047 copying build/lib/rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:23,051 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:23,057 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:40:23,059 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:40:23,062 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:40:23,067 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:40:23,071 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:40:23,075 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:40:23,080 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/sequence 2025-12-08T19:40:23,083 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:23,088 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:23,092 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:23,096 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:23,102 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:40:23,104 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:40:23,108 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:40:23,111 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:40:23,114 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:40:23,118 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna/util 2025-12-08T19:40:23,122 copying build/lib/rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3/moderna 2025-12-08T19:40:23,126 copying build/lib/rna_tools/tools/mini_moderna3/MANIFEST.in -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:23,131 copying build/lib/rna_tools/tools/mini_moderna3/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:23,134 copying build/lib/rna_tools/tools/mini_moderna3/.coveragerc -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:23,138 copying build/lib/rna_tools/tools/mini_moderna3/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:23,142 copying build/lib/rna_tools/tools/mini_moderna3/COPYING -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:23,148 copying build/lib/rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:23,152 copying build/lib/rna_tools/tools/mini_moderna3/.travis.yml -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/mini_moderna3 2025-12-08T19:40:23,157 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:40:23,159 copying build/lib/rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:40:23,162 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:40:23,166 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:23,168 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:23,174 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:23,178 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/renum_pdb_to_aln/test_data 2025-12-08T19:40:23,183 copying build/lib/rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/renum_pdb_to_aln 2025-12-08T19:40:23,188 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,190 copying build/lib/rna_tools/tools/pdb_formatix/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,193 copying build/lib/rna_tools/tools/pdb_formatix/PDBFile.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,198 copying build/lib/rna_tools/tools/pdb_formatix/rebuilder.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,201 copying build/lib/rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,206 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,208 copying build/lib/rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,218 copying build/lib/rna_tools/tools/pdb_formatix/test/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,223 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,227 copying build/lib/rna_tools/tools/pdb_formatix/test/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,230 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,239 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,263 copying build/lib/rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,266 copying build/lib/rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,274 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,304 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.in -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,308 copying build/lib/rna_tools/tools/pdb_formatix/test/protein.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,313 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,321 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,329 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,336 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.in -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix/test 2025-12-08T19:40:23,343 copying build/lib/rna_tools/tools/pdb_formatix/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,346 copying build/lib/rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,350 copying build/lib/rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pdb_formatix 2025-12-08T19:40:23,354 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2025-12-08T19:40:23,357 copying build/lib/rna_tools/tools/clarna_play/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play 2025-12-08T19:40:23,360 copying build/lib/rna_tools/tools/clarna_play/PDBSeq.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play 2025-12-08T19:40:23,364 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play 2025-12-08T19:40:23,372 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2025-12-08T19:40:23,374 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_output 2025-12-08T19:40:23,378 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_output 2025-12-08T19:40:23,381 copying build/lib/rna_tools/tools/clarna_play/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play 2025-12-08T19:40:23,386 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/docs 2025-12-08T19:40:23,388 copying build/lib/rna_tools/tools/clarna_play/docs/clarna_run.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/docs 2025-12-08T19:40:23,399 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play 2025-12-08T19:40:23,408 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,411 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,459 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,469 copying build/lib/rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,477 copying build/lib/rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,485 copying build/lib/rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,495 copying build/lib/rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,501 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,510 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,519 copying build/lib/rna_tools/tools/clarna_play/test_data/ss.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/test_data 2025-12-08T19:40:23,522 copying build/lib/rna_tools/tools/clarna_play/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play 2025-12-08T19:40:23,528 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,530 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,534 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,538 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,545 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,551 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,558 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,562 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,569 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,572 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,576 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,580 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib 2025-12-08T19:40:23,584 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:23,587 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:23,590 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:23,594 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:23,683 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:23,931 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:23,956 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:24,167 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/ClaRNAlib/lib 2025-12-08T19:40:24,283 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2025-12-08T19:40:24,285 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/tests 2025-12-08T19:40:24,294 copying build/lib/rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/tests 2025-12-08T19:40:24,305 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/tests 2025-12-08T19:40:24,316 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib 2025-12-08T19:40:24,319 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:24,321 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:24,325 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:24,328 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2025-12-08T19:40:24,334 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:40:24,336 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:40:24,339 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:40:24,346 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/lib/rna_pdb_tools 2025-12-08T19:40:24,350 copying build/lib/rna_tools/tools/clarna_play/lib/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_play/lib 2025-12-08T19:40:24,354 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,357 copying build/lib/rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,361 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,366 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,370 copying build/lib/rna_tools/tools/PyMOL4RNA/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,374 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:40:24,376 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:40:24,380 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:40:24,383 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:40:24,387 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:40:24,391 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:40:24,395 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/libs 2025-12-08T19:40:24,400 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,406 copying build/lib/rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,412 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/test_data 2025-12-08T19:40:24,414 copying build/lib/rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/test_data 2025-12-08T19:40:24,430 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,432 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,440 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,452 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,461 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,473 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,481 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,530 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/p.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,586 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/run.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,662 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,718 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,727 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA/doc 2025-12-08T19:40:24,736 copying build/lib/rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,742 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,749 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,754 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,762 copying build/lib/rna_tools/tools/PyMOL4RNA/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,766 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,777 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,782 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,788 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/PyMOL4RNA 2025-12-08T19:40:24,796 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:24,799 copying build/lib/rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:24,804 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data 2025-12-08T19:40:24,808 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:24,811 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:24,816 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:24,822 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:24,829 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv/data/cwc15 2025-12-08T19:40:24,834 copying build/lib/rna_tools/tools/pymol_color_by_conserv/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:24,839 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:24,842 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:24,848 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:25,024 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv/docs 2025-12-08T19:40:25,047 copying build/lib/rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:25,052 copying build/lib/rna_tools/tools/pymol_color_by_conserv/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_color_by_conserv 2025-12-08T19:40:25,058 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2025-12-08T19:40:25,061 copying build/lib/rna_tools/tools/rna_rfam/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rfam 2025-12-08T19:40:25,066 copying build/lib/rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rfam 2025-12-08T19:40:25,070 copying build/lib/rna_tools/tools/rna_rfam/list.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_rfam 2025-12-08T19:40:25,079 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2025-12-08T19:40:25,082 copying build/lib/rna_tools/tools/rna_refinement/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement 2025-12-08T19:40:25,086 copying build/lib/rna_tools/tools/rna_refinement/rna_refinement.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement 2025-12-08T19:40:25,091 copying build/lib/rna_tools/tools/rna_refinement/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement 2025-12-08T19:40:25,097 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,100 copying build/lib/rna_tools/tools/rna_refinement/test_data/output.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,116 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,126 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,139 copying build/lib/rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,152 copying build/lib/rna_tools/tools/rna_refinement/test_data/input.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,163 copying build/lib/rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,172 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,184 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement/test_data 2025-12-08T19:40:25,195 copying build/lib/rna_tools/tools/rna_refinement/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_refinement 2025-12-08T19:40:25,201 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:25,205 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash 2025-12-08T19:40:25,209 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow 2025-12-08T19:40:25,213 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2025-12-08T19:40:25,216 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2025-12-08T19:40:25,221 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2025-12-08T19:40:25,227 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:25,230 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:25,236 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,239 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,259 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,308 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,360 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,366 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,400 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,409 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/docs 2025-12-08T19:40:25,434 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:25,439 copying build/lib/rna_tools/tools/pymol_preview_generator/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:25,444 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh 2025-12-08T19:40:25,448 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow 2025-12-08T19:40:25,452 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2025-12-08T19:40:25,456 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2025-12-08T19:40:25,460 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2025-12-08T19:40:25,466 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:25,469 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2025-12-08T19:40:25,474 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/pymol_preview_generator 2025-12-08T19:40:25,480 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:25,483 copying build/lib/rna_tools/tools/rna_prediction_significance/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:25,489 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance/opt 2025-12-08T19:40:25,491 copying build/lib/rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_prediction_significance/opt 2025-12-08T19:40:25,496 copying build/lib/rna_tools/tools/rna_prediction_significance/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:25,500 copying build/lib/rna_tools/tools/rna_prediction_significance/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:25,505 copying build/lib/rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:25,509 copying build/lib/rna_tools/tools/rna_prediction_significance/LICENSE -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_prediction_significance 2025-12-08T19:40:25,516 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2025-12-08T19:40:25,519 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_out 2025-12-08T19:40:25,521 copying build/lib/rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels/test_out 2025-12-08T19:40:25,543 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2025-12-08T19:40:25,545 copying build/lib/rna_tools/tools/rna_multimodels/data/seq.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels/data 2025-12-08T19:40:25,549 copying build/lib/rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels/data 2025-12-08T19:40:25,623 copying build/lib/rna_tools/tools/rna_multimodels/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels 2025-12-08T19:40:25,627 copying build/lib/rna_tools/tools/rna_multimodels/test_util.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels 2025-12-08T19:40:25,632 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:25,634 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:25,652 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:25,668 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels/test_in 2025-12-08T19:40:25,683 copying build/lib/rna_tools/tools/rna_multimodels/check.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels 2025-12-08T19:40:25,686 copying build/lib/rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_multimodels 2025-12-08T19:40:25,691 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2025-12-08T19:40:25,693 copying build/lib/rna_tools/tools/clarna_app/test.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app 2025-12-08T19:40:25,697 copying build/lib/rna_tools/tools/clarna_app/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app 2025-12-08T19:40:25,701 copying build/lib/rna_tools/tools/clarna_app/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app 2025-12-08T19:40:25,705 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2025-12-08T19:40:25,708 copying build/lib/rna_tools/tools/clarna_app/data/cl.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app/data 2025-12-08T19:40:25,716 copying build/lib/rna_tools/tools/clarna_app/data/cl_full.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app/data 2025-12-08T19:40:25,720 copying build/lib/rna_tools/tools/clarna_app/data/cl_short.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app/data 2025-12-08T19:40:25,723 copying build/lib/rna_tools/tools/clarna_app/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app 2025-12-08T19:40:25,727 copying build/lib/rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app 2025-12-08T19:40:25,731 copying build/lib/rna_tools/tools/clarna_app/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/clarna_app 2025-12-08T19:40:25,735 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2025-12-08T19:40:25,737 copying build/lib/rna_tools/tools/rna_calc_inf/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf 2025-12-08T19:40:25,740 copying build/lib/rna_tools/tools/rna_calc_inf/test.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf 2025-12-08T19:40:25,746 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,748 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,751 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,761 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,765 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,790 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,804 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,807 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,837 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,842 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,846 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,863 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,868 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,873 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,877 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,882 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data 2025-12-08T19:40:25,887 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,890 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,894 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,911 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,926 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,937 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,940 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,944 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,961 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,978 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/test_data/rp13 2025-12-08T19:40:25,998 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2025-12-08T19:40:25,1000 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/doc 2025-12-08T19:40:26,036 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf/doc 2025-12-08T19:40:26,088 copying build/lib/rna_tools/tools/rna_calc_inf/readme.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf 2025-12-08T19:40:26,093 copying build/lib/rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf 2025-12-08T19:40:26,097 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf 2025-12-08T19:40:26,101 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/rna_calc_inf 2025-12-08T19:40:26,108 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2025-12-08T19:40:26,111 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions 2025-12-08T19:40:26,113 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/django_extensions 2025-12-08T19:40:26,118 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/css 2025-12-08T19:40:26,120 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/django_extensions/css 2025-12-08T19:40:26,124 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/img 2025-12-08T19:40:26,127 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/django_extensions/img 2025-12-08T19:40:26,132 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:26,134 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:26,139 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:26,143 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:26,156 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/django_extensions/js 2025-12-08T19:40:26,161 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2025-12-08T19:40:26,163 copying build/lib/rna_tools/tools/webserver-engine/app/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app 2025-12-08T19:40:26,168 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,170 copying build/lib/rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,175 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,179 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,183 copying build/lib/rna_tools/tools/webserver-engine/app/templates/assess.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,187 copying build/lib/rna_tools/tools/webserver-engine/app/templates/ss.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,191 copying build/lib/rna_tools/tools/webserver-engine/app/templates/help.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,201 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notes.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,204 copying build/lib/rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,208 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,211 copying build/lib/rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,216 copying build/lib/rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,219 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,223 copying build/lib/rna_tools/tools/webserver-engine/app/templates/base.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,227 copying build/lib/rna_tools/tools/webserver-engine/app/templates/contact.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,231 copying build/lib/rna_tools/tools/webserver-engine/app/templates/delete.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,235 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,238 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,243 copying build/lib/rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,247 copying build/lib/rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,252 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:26,254 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:26,259 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:26,263 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:26,267 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:26,270 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates/archive 2025-12-08T19:40:26,274 copying build/lib/rna_tools/tools/webserver-engine/app/templates/seq.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,278 copying build/lib/rna_tools/tools/webserver-engine/app/templates/cat.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,282 copying build/lib/rna_tools/tools/webserver-engine/app/templates/extract.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,286 copying build/lib/rna_tools/tools/webserver-engine/app/templates/min.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,290 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,295 copying build/lib/rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,299 copying build/lib/rna_tools/tools/webserver-engine/app/templates/edit.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,303 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,306 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tools.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,311 copying build/lib/rna_tools/tools/webserver-engine/app/templates/home.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,315 copying build/lib/rna_tools/tools/webserver-engine/app/templates/swap.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,319 copying build/lib/rna_tools/tools/webserver-engine/app/templates/errors.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,323 copying build/lib/rna_tools/tools/webserver-engine/app/templates/about.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/templates 2025-12-08T19:40:26,326 copying build/lib/rna_tools/tools/webserver-engine/app/models.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app 2025-12-08T19:40:26,331 copying build/lib/rna_tools/tools/webserver-engine/app/admin.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app 2025-12-08T19:40:26,336 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static 2025-12-08T19:40:26,339 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:26,342 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:26,345 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:26,349 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:26,352 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:26,356 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2025-12-08T19:40:26,363 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,365 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,369 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,380 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,384 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,387 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,391 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,407 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,411 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,415 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,425 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,450 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,463 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,466 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,480 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,498 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,502 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,507 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,520 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,525 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,536 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,540 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,544 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,548 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,557 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,560 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,577 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,598 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,602 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,609 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,623 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,627 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,631 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,640 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,647 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,654 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,659 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,668 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/demo 2025-12-08T19:40:26,672 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:26,676 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:26,681 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,683 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,695 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,701 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,721 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,728 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,746 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,749 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,760 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,773 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,787 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/img 2025-12-08T19:40:26,805 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:26,989 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2025-12-08T19:40:26,998 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/dropzone 2025-12-08T19:40:27,019 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/dropzone 2025-12-08T19:40:27,025 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2025-12-08T19:40:27,028 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/help 2025-12-08T19:40:27,037 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/help 2025-12-08T19:40:27,042 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap 2025-12-08T19:40:27,046 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:27,047 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:27,053 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:27,064 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:27,075 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2025-12-08T19:40:27,081 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2025-12-08T19:40:27,083 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2025-12-08T19:40:27,088 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2025-12-08T19:40:27,093 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:27,095 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:27,103 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:27,108 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2025-12-08T19:40:27,118 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2025-12-08T19:40:27,121 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2025-12-08T19:40:27,126 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2025-12-08T19:40:27,129 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2025-12-08T19:40:27,134 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2025-12-08T19:40:27,140 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2025-12-08T19:40:27,143 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2025-12-08T19:40:27,149 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2025-12-08T19:40:27,156 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2025-12-08T19:40:27,169 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2025-12-08T19:40:27,172 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2025-12-08T19:40:27,177 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2025-12-08T19:40:27,183 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2025-12-08T19:40:27,189 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2025-12-08T19:40:27,192 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2025-12-08T19:40:27,198 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2025-12-08T19:40:27,201 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2025-12-08T19:40:27,206 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2025-12-08T19:40:27,212 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2025-12-08T19:40:27,218 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:27,221 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:27,231 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2025-12-08T19:40:27,235 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:27,239 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:27,243 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:27,253 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,256 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,262 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,267 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,271 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,277 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,281 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,285 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,290 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,294 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,300 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,304 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,309 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,314 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,319 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2025-12-08T19:40:27,324 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:27,328 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2025-12-08T19:40:27,337 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2025-12-08T19:40:27,341 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:27,347 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets 2025-12-08T19:40:27,351 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:27,354 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:27,367 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:27,370 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:27,378 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:27,384 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:27,391 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:27,396 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2025-12-08T19:40:27,408 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:27,413 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:27,418 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2025-12-08T19:40:27,424 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:27,427 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:27,432 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:27,437 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:27,441 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:27,447 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:27,452 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2025-12-08T19:40:27,458 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2025-12-08T19:40:27,461 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2025-12-08T19:40:27,468 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:27,471 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:27,480 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:27,490 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:27,496 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:27,502 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2025-12-08T19:40:27,506 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2025-12-08T19:40:27,511 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2025-12-08T19:40:27,516 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:27,532 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2025-12-08T19:40:27,536 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:27,542 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party 2025-12-08T19:40:27,545 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput 2025-12-08T19:40:27,549 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2025-12-08T19:40:27,551 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2025-12-08T19:40:27,557 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:27,559 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:27,563 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:27,566 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:27,570 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2025-12-08T19:40:27,575 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2025-12-08T19:40:27,577 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2025-12-08T19:40:27,582 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2025-12-08T19:40:27,588 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:27,590 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:27,598 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:27,601 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:27,605 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2025-12-08T19:40:27,624 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2025-12-08T19:40:27,626 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2025-12-08T19:40:27,632 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2025-12-08T19:40:27,634 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2025-12-08T19:40:27,640 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:27,642 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:27,647 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:27,653 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2025-12-08T19:40:27,659 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:27,661 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:27,672 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:27,688 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2025-12-08T19:40:27,693 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2025-12-08T19:40:27,700 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app/static/app 2025-12-08T19:40:27,705 copying build/lib/rna_tools/tools/webserver-engine/app/views.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/app 2025-12-08T19:40:27,712 copying build/lib/rna_tools/tools/webserver-engine/notes.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:27,717 copying build/lib/rna_tools/tools/webserver-engine/ac -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:27,721 copying build/lib/rna_tools/tools/webserver-engine/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:27,726 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2025-12-08T19:40:27,729 copying build/lib/rna_tools/tools/webserver-engine/web/__init__.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/web 2025-12-08T19:40:27,733 copying build/lib/rna_tools/tools/webserver-engine/web/wsgi.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/web 2025-12-08T19:40:27,737 copying build/lib/rna_tools/tools/webserver-engine/web/settings.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/web 2025-12-08T19:40:27,742 copying build/lib/rna_tools/tools/webserver-engine/web/urls.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/web 2025-12-08T19:40:27,747 copying build/lib/rna_tools/tools/webserver-engine/checker.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:27,751 copying build/lib/rna_tools/tools/webserver-engine/sendmail.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:27,757 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2025-12-08T19:40:27,760 copying build/lib/rna_tools/tools/webserver-engine/docs/demo.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/docs 2025-12-08T19:40:27,814 copying build/lib/rna_tools/tools/webserver-engine/docs/admin.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/docs 2025-12-08T19:40:27,881 copying build/lib/rna_tools/tools/webserver-engine/cleanup.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:27,886 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin 2025-12-08T19:40:27,889 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,891 copying build/lib/rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,895 copying build/lib/rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,900 copying build/lib/rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,904 copying build/lib/rna_tools/tools/webserver-engine/admin/css/ie.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,908 copying build/lib/rna_tools/tools/webserver-engine/admin/css/forms.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,912 copying build/lib/rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,916 copying build/lib/rna_tools/tools/webserver-engine/admin/css/base.css -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/css 2025-12-08T19:40:27,924 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,926 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,930 copying build/lib/rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,933 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,937 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,941 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,944 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,948 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,951 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,955 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,959 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,962 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,966 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,970 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,973 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,977 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,981 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,986 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img/gis 2025-12-08T19:40:27,988 copying build/lib/rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img/gis 2025-12-08T19:40:27,992 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,996 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:27,1000 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,003 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,007 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,011 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,014 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,018 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,022 copying build/lib/rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,025 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,029 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,033 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,037 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,040 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,044 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,048 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,051 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,055 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,059 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,063 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,066 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,070 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,073 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/img 2025-12-08T19:40:28,079 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,081 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,085 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,089 copying build/lib/rna_tools/tools/webserver-engine/admin/js/core.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,094 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,098 copying build/lib/rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,102 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,107 copying build/lib/rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,110 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,114 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,118 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,123 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:28,125 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:28,129 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:28,134 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js/admin 2025-12-08T19:40:28,138 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,142 copying build/lib/rna_tools/tools/webserver-engine/admin/js/compress.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,146 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,149 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,157 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,170 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,174 copying build/lib/rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,178 copying build/lib/rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,183 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,186 copying build/lib/rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine/admin/js 2025-12-08T19:40:28,190 copying build/lib/rna_tools/tools/webserver-engine/daemon.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,194 copying build/lib/rna_tools/tools/webserver-engine/.gitignore -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,197 copying build/lib/rna_tools/tools/webserver-engine/install.txt -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,201 copying build/lib/rna_tools/tools/webserver-engine/README.md -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,205 copying build/lib/rna_tools/tools/webserver-engine/daemon.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,210 copying build/lib/rna_tools/tools/webserver-engine/wsgi.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,214 copying build/lib/rna_tools/tools/webserver-engine/checker.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,218 copying build/lib/rna_tools/tools/webserver-engine/ddev.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,221 copying build/lib/rna_tools/tools/webserver-engine/runme_dev.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,225 copying build/lib/rna_tools/tools/webserver-engine/manage.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tools/webserver-engine 2025-12-08T19:40:28,229 copying build/lib/rna_tools/rna_pdb_seq.py -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:28,235 creating build/bdist.linux-armv7l/wheel/rna_tools/tests 2025-12-08T19:40:28,237 copying build/lib/rna_tools/tests/test_eval.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tests 2025-12-08T19:40:28,241 copying build/lib/rna_tools/tests/test_rnafold.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tests 2025-12-08T19:40:28,244 copying build/lib/rna_tools/tests/test_rna_ss_pred.sh -> build/bdist.linux-armv7l/wheel/./rna_tools/tests 2025-12-08T19:40:28,248 copying build/lib/rna_tools/tests/test_seq_mcfold2.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tests 2025-12-08T19:40:28,252 copying build/lib/rna_tools/tests/test_seq_cyclefold.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tests 2025-12-08T19:40:28,255 copying build/lib/rna_tools/tests/test_seq_mcfold.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tests 2025-12-08T19:40:28,260 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2025-12-08T19:40:28,263 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module/test_data 2025-12-08T19:40:28,266 copying build/lib/rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/./rna_tools/tests/test_import_module/test_data 2025-12-08T19:40:28,270 copying build/lib/rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/bdist.linux-armv7l/wheel/./rna_tools/tests/test_import_module 2025-12-08T19:40:28,274 copying build/lib/rna_tools/tests/test_import_module/rchie.png -> build/bdist.linux-armv7l/wheel/./rna_tools/tests/test_import_module 2025-12-08T19:40:28,284 copying build/lib/rna_tools/rchie.png -> build/bdist.linux-armv7l/wheel/./rna_tools 2025-12-08T19:40:28,318 creating build/bdist.linux-armv7l/wheel/tests 2025-12-08T19:40:28,320 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2025-12-08T19:40:28,323 copying build/lib/tests/test_module.py -> build/bdist.linux-armv7l/wheel/./tests 2025-12-08T19:40:28,326 running install_egg_info 2025-12-08T19:40:28,386 Copying rna_tools.egg-info to build/bdist.linux-armv7l/wheel/./rna_tools-3.25-py3.9.egg-info 2025-12-08T19:40:28,420 running install_scripts 2025-12-08T19:40:28,427 creating build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,430 copying build/scripts-3.9/triplexibility.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,435 copying build/scripts-3.9/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,439 copying build/scripts-3.9/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,443 copying build/scripts-3.9/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,447 copying build/scripts-3.9/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,452 copying build/scripts-3.9/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,456 copying build/scripts-3.9/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,461 copying build/scripts-3.9/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,464 copying build/scripts-3.9/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,468 copying build/scripts-3.9/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,472 copying build/scripts-3.9/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,478 copying build/scripts-3.9/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,483 copying build/scripts-3.9/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,486 copying build/scripts-3.9/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,490 copying build/scripts-3.9/rna_torsions.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,493 copying build/scripts-3.9/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,498 copying build/scripts-3.9/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,501 copying build/scripts-3.9/rna_md.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,506 copying build/scripts-3.9/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,509 copying build/scripts-3.9/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,513 copying build/scripts-3.9/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,517 copying build/scripts-3.9/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,521 copying build/scripts-3.9/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,525 copying build/scripts-3.9/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,528 copying build/scripts-3.9/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,532 copying build/scripts-3.9/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,538 copying build/scripts-3.9/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,541 copying build/scripts-3.9/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,546 copying build/scripts-3.9/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,549 copying build/scripts-3.9/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,553 copying build/scripts-3.9/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,557 copying build/scripts-3.9/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,561 copying build/scripts-3.9/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,565 copying build/scripts-3.9/clarna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,572 copying build/scripts-3.9/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,576 copying build/scripts-3.9/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,581 copying build/scripts-3.9/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,584 copying build/scripts-3.9/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,589 copying build/scripts-3.9/rna_minimize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,592 copying build/scripts-3.9/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,596 copying build/scripts-3.9/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,600 copying build/scripts-3.9/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,604 copying build/scripts-3.9/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,608 copying build/scripts-3.9/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,612 copying build/scripts-3.9/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,616 copying build/scripts-3.9/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,620 copying build/scripts-3.9/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,623 copying build/scripts-3.9/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,629 copying build/scripts-3.9/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,632 copying build/scripts-3.9/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,636 copying build/scripts-3.9/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,640 copying build/scripts-3.9/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,643 copying build/scripts-3.9/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,648 copying build/scripts-3.9/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,651 copying build/scripts-3.9/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,655 copying build/scripts-3.9/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,659 copying build/scripts-3.9/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,662 copying build/scripts-3.9/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,666 copying build/scripts-3.9/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,669 copying build/scripts-3.9/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,673 copying build/scripts-3.9/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,676 copying build/scripts-3.9/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,680 copying build/scripts-3.9/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,685 copying build/scripts-3.9/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,688 copying build/scripts-3.9/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,692 copying build/scripts-3.9/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,696 copying build/scripts-3.9/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,699 copying build/scripts-3.9/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,703 copying build/scripts-3.9/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,706 copying build/scripts-3.9/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,710 copying build/scripts-3.9/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,713 copying build/scripts-3.9/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,717 copying build/scripts-3.9/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,721 copying build/scripts-3.9/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,724 copying build/scripts-3.9/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,728 copying build/scripts-3.9/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,731 copying build/scripts-3.9/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,736 copying build/scripts-3.9/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,739 copying build/scripts-3.9/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,743 copying build/scripts-3.9/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,747 copying build/scripts-3.9/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,751 copying build/scripts-3.9/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,754 copying build/scripts-3.9/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,758 copying build/scripts-3.9/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,761 copying build/scripts-3.9/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,764 copying build/scripts-3.9/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,768 copying build/scripts-3.9/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,772 copying build/scripts-3.9/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,775 copying build/scripts-3.9/triplexibility2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,780 copying build/scripts-3.9/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,785 copying build/scripts-3.9/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,788 copying build/scripts-3.9/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,792 copying build/scripts-3.9/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,795 copying build/scripts-3.9/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,799 copying build/scripts-3.9/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,803 copying build/scripts-3.9/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,807 copying build/scripts-3.9/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,810 copying build/scripts-3.9/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,813 copying build/scripts-3.9/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,817 copying build/scripts-3.9/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,821 copying build/scripts-3.9/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,824 copying build/scripts-3.9/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,828 copying build/scripts-3.9/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,832 copying build/scripts-3.9/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,837 copying build/scripts-3.9/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,840 copying build/scripts-3.9/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,845 copying build/scripts-3.9/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,849 copying build/scripts-3.9/rna_standardize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,853 copying build/scripts-3.9/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,857 copying build/scripts-3.9/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,862 copying build/scripts-3.9/trx_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,866 copying build/scripts-3.9/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,870 copying build/scripts-3.9/rna_workflow.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,874 copying build/scripts-3.9/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,878 copying build/scripts-3.9/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,881 copying build/scripts-3.9/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,885 copying build/scripts-3.9/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,888 copying build/scripts-3.9/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,892 copying build/scripts-3.9/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,897 copying build/scripts-3.9/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,900 copying build/scripts-3.9/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,904 copying build/scripts-3.9/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,908 copying build/scripts-3.9/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,912 copying build/scripts-3.9/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,916 copying build/scripts-3.9/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,920 copying build/scripts-3.9/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,924 copying build/scripts-3.9/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,928 copying build/scripts-3.9/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,932 copying build/scripts-3.9/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,936 copying build/scripts-3.9/rna_ok -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,940 copying build/scripts-3.9/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,943 copying build/scripts-3.9/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts 2025-12-08T19:40:28,946 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/triplexibility.py to 755 2025-12-08T19:40:28,947 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_pairs2SimRNArestrs.py to 755 2025-12-08T19:40:28,948 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_draw_edges.py to 755 2025-12-08T19:40:28,949 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_cluster.py to 755 2025-12-08T19:40:28,949 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_clanstix.py to 755 2025-12-08T19:40:28,950 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_df_csv_sort.py to 755 2025-12-08T19:40:28,951 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/diffpdb.py to 755 2025-12-08T19:40:28,951 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_ok_mail.py to 755 2025-12-08T19:40:28,952 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_dot2ct.py to 755 2025-12-08T19:40:28,953 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_sali2dotbracket.py to 755 2025-12-08T19:40:28,954 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_pdb_tools.py to 755 2025-12-08T19:40:28,954 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_clarna_app.py to 755 2025-12-08T19:40:28,956 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_align_get_ss_from_stk.py to 755 2025-12-08T19:40:28,956 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_align_strip_stk.py to 755 2025-12-08T19:40:28,957 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_torsions.py to 755 2025-12-08T19:40:28,958 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_filter.py to 755 2025-12-08T19:40:28,958 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_mq_dfire.py to 755 2025-12-08T19:40:28,959 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_md.py to 755 2025-12-08T19:40:28,960 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_traj_nohetm.py to 755 2025-12-08T19:40:28,961 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_align_fetch_seed.py to 755 2025-12-08T19:40:28,961 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_alignment_get_species.py to 755 2025-12-08T19:40:28,962 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_traj_range.py to 755 2025-12-08T19:40:28,963 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_mq_analyzegeometry.py to 755 2025-12-08T19:40:28,963 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_align_coverage.py to 755 2025-12-08T19:40:28,964 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_simrna_cluster.py to 755 2025-12-08T19:40:28,965 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_clarna_run.py to 755 2025-12-08T19:40:28,966 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_pairs_diff.py to 755 2025-12-08T19:40:28,966 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/pdbs_measure_atom_dists.py to 755 2025-12-08T19:40:28,967 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_tools_demo.py to 755 2025-12-08T19:40:28,968 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_min.py to 755 2025-12-08T19:40:28,969 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_mq_plot.py to 755 2025-12-08T19:40:28,969 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_calc_rmsd_biopython.py to 755 2025-12-08T19:40:28,970 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_df_concat.py to 755 2025-12-08T19:40:28,971 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/clarna.py to 755 2025-12-08T19:40:28,972 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_plot_dendogram.py to 755 2025-12-08T19:40:28,972 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_align_foldability.py to 755 2025-12-08T19:40:28,973 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_mq_rsRNASP.py to 755 2025-12-08T19:40:28,974 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_calc_rmsd_trafl.py to 755 2025-12-08T19:40:28,974 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_minimize.py to 755 2025-12-08T19:40:28,975 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_pdb_inspect.py to 755 2025-12-08T19:40:28,976 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_refinement.py to 755 2025-12-08T19:40:28,977 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_silent_file_sort_and_select.py to 755 2025-12-08T19:40:28,978 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_extract.py to 755 2025-12-08T19:40:28,978 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_align_seq_to_alignment.py to 755 2025-12-08T19:40:28,979 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_align_find_seq_in_alignment.py to 755 2025-12-08T19:40:28,980 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_pdb_merge_structure_with_fragments.py to 755 2025-12-08T19:40:28,981 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_pkd2kd.py to 755 2025-12-08T19:40:28,981 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_clarna_compare.py to 755 2025-12-08T19:40:28,982 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_df_merge.py to 755 2025-12-08T19:40:28,983 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_extract_lowscore_decoys.py to 755 2025-12-08T19:40:28,984 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/pymol_color_by_conserv.py to 755 2025-12-08T19:40:28,984 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_plot_boxplotlike.py to 755 2025-12-08T19:40:28,985 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_run.py to 755 2025-12-08T19:40:28,986 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_mq_wx_collect.py to 755 2025-12-08T19:40:28,987 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/pymol_preview_generator.py to 755 2025-12-08T19:40:28,987 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_clarna2graph.py to 755 2025-12-08T19:40:28,988 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_traj_n.py to 755 2025-12-08T19:40:28,989 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_alignment_process_id.py to 755 2025-12-08T19:40:28,989 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_df_merge_on.py to 755 2025-12-08T19:40:28,990 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_simrna_extract.py to 755 2025-12-08T19:40:28,991 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_kd2dG.py to 755 2025-12-08T19:40:28,992 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_mq_farfar2.py to 755 2025-12-08T19:40:28,992 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/random_assignment_of_nucleotides.py to 755 2025-12-08T19:40:28,993 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_head.py to 755 2025-12-08T19:40:28,994 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/trx_mutagen_allvsall.py to 755 2025-12-08T19:40:28,995 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_calc_hbonds.py to 755 2025-12-08T19:40:28,996 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_ss_get_bps.py to 755 2025-12-08T19:40:28,997 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_mq_clashscore.py to 755 2025-12-08T19:40:28,997 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_calc_fenergy.py to 755 2025-12-08T19:40:28,998 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_rosetta_n.py to 755 2025-12-08T19:40:28,999 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.25.data/scripts/rna_kd2pkd.py to 755 2025-12-08T19:40:28,999 changing 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adding 'rna_tools/tools/mini_moderna3/moderna/Helix.py' 2025-12-08T19:40:40,072 adding 'rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py' 2025-12-08T19:40:40,078 adding 'rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py' 2025-12-08T19:40:40,084 adding 'rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py' 2025-12-08T19:40:40,087 adding 'rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py' 2025-12-08T19:40:40,091 adding 'rna_tools/tools/mini_moderna3/moderna/PdbConverter.py' 2025-12-08T19:40:40,095 adding 'rna_tools/tools/mini_moderna3/moderna/RNAChain.py' 2025-12-08T19:40:40,102 adding 'rna_tools/tools/mini_moderna3/moderna/RNAModel.py' 2025-12-08T19:40:40,106 adding 'rna_tools/tools/mini_moderna3/moderna/RNAResidue.py' 2025-12-08T19:40:40,111 adding 'rna_tools/tools/mini_moderna3/moderna/Renumerator.py' 2025-12-08T19:40:40,115 adding 'rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py' 2025-12-08T19:40:40,118 adding 'rna_tools/tools/mini_moderna3/moderna/Template.py' 2025-12-08T19:40:40,121 adding 'rna_tools/tools/mini_moderna3/moderna/__init__.py' 2025-12-08T19:40:40,126 adding 'rna_tools/tools/mini_moderna3/moderna/_version.py' 2025-12-08T19:40:40,140 adding 'rna_tools/tools/mini_moderna3/moderna/commands.py' 2025-12-08T19:40:40,144 adding 'rna_tools/tools/mini_moderna3/moderna/moderna.py' 2025-12-08T19:40:40,151 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py' 2025-12-08T19:40:40,155 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py' 2025-12-08T19:40:40,159 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py' 2025-12-08T19:40:40,164 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py' 2025-12-08T19:40:40,168 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py' 2025-12-08T19:40:40,172 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py' 2025-12-08T19:40:40,177 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py' 2025-12-08T19:40:40,183 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py' 2025-12-08T19:40:40,188 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py' 2025-12-08T19:40:40,192 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py' 2025-12-08T19:40:40,197 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py' 2025-12-08T19:40:40,206 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py' 2025-12-08T19:40:40,215 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py' 2025-12-08T19:40:40,219 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py' 2025-12-08T19:40:40,223 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py' 2025-12-08T19:40:40,228 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py' 2025-12-08T19:40:40,232 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py' 2025-12-08T19:40:40,240 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py' 2025-12-08T19:40:40,244 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py' 2025-12-08T19:40:40,249 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py' 2025-12-08T19:40:40,253 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py' 2025-12-08T19:40:40,258 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py' 2025-12-08T19:40:40,266 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py' 2025-12-08T19:40:40,271 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py' 2025-12-08T19:40:40,275 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py' 2025-12-08T19:40:40,280 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py' 2025-12-08T19:40:40,295 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb' 2025-12-08T19:40:40,303 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb' 2025-12-08T19:40:40,318 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb' 2025-12-08T19:40:40,331 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb' 2025-12-08T19:40:40,337 adding 'rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py' 2025-12-08T19:40:40,341 adding 'rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py' 2025-12-08T19:40:40,344 adding 'rna_tools/tools/mini_moderna3/moderna/builder/Constants.py' 2025-12-08T19:40:40,347 adding 'rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py' 2025-12-08T19:40:40,351 adding 'rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py' 2025-12-08T19:40:40,357 adding 'rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py' 2025-12-08T19:40:40,360 adding 'rna_tools/tools/mini_moderna3/moderna/builder/__init__.py' 2025-12-08T19:40:40,383 adding 'rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb' 2025-12-08T19:40:40,402 adding 'rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt' 2025-12-08T19:40:40,407 adding 'rna_tools/tools/mini_moderna3/moderna/data/all_atom_names' 2025-12-08T19:40:40,456 adding 'rna_tools/tools/mini_moderna3/moderna/data/helix.pdb' 2025-12-08T19:40:40,464 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_names_table' 2025-12-08T19:40:40,468 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt' 2025-12-08T19:40:40,473 adding 'rna_tools/tools/mini_moderna3/moderna/data/modifications' 2025-12-08T19:40:40,477 adding 'rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb' 2025-12-08T19:40:40,480 adding 'rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb' 2025-12-08T19:40:40,484 adding 'rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt' 2025-12-08T19:40:40,487 adding 'rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt' 2025-12-08T19:40:40,497 adding 'rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb' 2025-12-08T19:40:40,501 adding 'rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt' 2025-12-08T19:40:40,515 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb' 2025-12-08T19:40:40,519 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb' 2025-12-08T19:40:40,523 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb' 2025-12-08T19:40:40,527 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb' 2025-12-08T19:40:40,530 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb' 2025-12-08T19:40:40,534 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb' 2025-12-08T19:40:40,538 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb' 2025-12-08T19:40:40,542 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb' 2025-12-08T19:40:40,546 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb' 2025-12-08T19:40:40,549 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb' 2025-12-08T19:40:40,553 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb' 2025-12-08T19:40:40,557 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb' 2025-12-08T19:40:40,561 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb' 2025-12-08T19:40:40,564 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb' 2025-12-08T19:40:40,568 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb' 2025-12-08T19:40:40,572 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb' 2025-12-08T19:40:40,576 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb' 2025-12-08T19:40:40,580 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb' 2025-12-08T19:40:40,583 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb' 2025-12-08T19:40:40,587 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb' 2025-12-08T19:40:40,591 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb' 2025-12-08T19:40:40,595 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb' 2025-12-08T19:40:40,598 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb' 2025-12-08T19:40:40,602 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb' 2025-12-08T19:40:40,606 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb' 2025-12-08T19:40:40,610 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb' 2025-12-08T19:40:40,614 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb' 2025-12-08T19:40:40,618 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb' 2025-12-08T19:40:40,622 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb' 2025-12-08T19:40:40,626 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb' 2025-12-08T19:40:40,629 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb' 2025-12-08T19:40:40,633 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb' 2025-12-08T19:40:40,637 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb' 2025-12-08T19:40:40,642 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb' 2025-12-08T19:40:40,646 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb' 2025-12-08T19:40:40,649 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb' 2025-12-08T19:40:40,653 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb' 2025-12-08T19:40:40,657 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb' 2025-12-08T19:40:40,661 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb' 2025-12-08T19:40:40,665 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb' 2025-12-08T19:40:40,668 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb' 2025-12-08T19:40:40,672 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb' 2025-12-08T19:40:40,676 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb' 2025-12-08T19:40:40,680 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb' 2025-12-08T19:40:40,683 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb' 2025-12-08T19:40:40,687 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb' 2025-12-08T19:40:40,691 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb' 2025-12-08T19:40:40,695 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb' 2025-12-08T19:40:40,698 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb' 2025-12-08T19:40:40,702 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb' 2025-12-08T19:40:40,706 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb' 2025-12-08T19:40:40,710 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb' 2025-12-08T19:40:40,714 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb' 2025-12-08T19:40:40,717 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb' 2025-12-08T19:40:40,721 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb' 2025-12-08T19:40:40,725 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb' 2025-12-08T19:40:40,729 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb' 2025-12-08T19:40:40,733 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb' 2025-12-08T19:40:40,737 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb' 2025-12-08T19:40:40,740 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb' 2025-12-08T19:40:40,744 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb' 2025-12-08T19:40:40,748 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb' 2025-12-08T19:40:40,752 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb' 2025-12-08T19:40:40,756 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb' 2025-12-08T19:40:40,760 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb' 2025-12-08T19:40:40,763 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb' 2025-12-08T19:40:40,767 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb' 2025-12-08T19:40:40,771 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb' 2025-12-08T19:40:40,775 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb' 2025-12-08T19:40:40,779 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb' 2025-12-08T19:40:40,783 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb' 2025-12-08T19:40:40,787 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb' 2025-12-08T19:40:40,791 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb' 2025-12-08T19:40:40,795 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb' 2025-12-08T19:40:40,798 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb' 2025-12-08T19:40:40,802 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb' 2025-12-08T19:40:40,806 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb' 2025-12-08T19:40:40,810 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb' 2025-12-08T19:40:40,814 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb' 2025-12-08T19:40:40,818 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb' 2025-12-08T19:40:40,821 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb' 2025-12-08T19:40:40,825 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb' 2025-12-08T19:40:40,828 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb' 2025-12-08T19:40:40,832 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb' 2025-12-08T19:40:40,836 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb' 2025-12-08T19:40:40,840 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb' 2025-12-08T19:40:40,843 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb' 2025-12-08T19:40:40,847 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb' 2025-12-08T19:40:40,851 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb' 2025-12-08T19:40:40,855 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb' 2025-12-08T19:40:40,858 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb' 2025-12-08T19:40:40,862 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb' 2025-12-08T19:40:40,866 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb' 2025-12-08T19:40:40,870 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb' 2025-12-08T19:40:40,874 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb' 2025-12-08T19:40:40,877 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb' 2025-12-08T19:40:40,881 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb' 2025-12-08T19:40:40,885 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb' 2025-12-08T19:40:40,889 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb' 2025-12-08T19:40:40,892 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb' 2025-12-08T19:40:40,896 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb' 2025-12-08T19:40:40,900 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb' 2025-12-08T19:40:40,904 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb' 2025-12-08T19:40:40,908 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb' 2025-12-08T19:40:40,911 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb' 2025-12-08T19:40:40,915 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb' 2025-12-08T19:40:40,919 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb' 2025-12-08T19:40:40,923 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb' 2025-12-08T19:40:40,927 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb' 2025-12-08T19:40:40,931 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb' 2025-12-08T19:40:40,935 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb' 2025-12-08T19:40:40,938 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb' 2025-12-08T19:40:40,942 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb' 2025-12-08T19:40:40,946 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb' 2025-12-08T19:40:40,950 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb' 2025-12-08T19:40:40,953 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb' 2025-12-08T19:40:40,957 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb' 2025-12-08T19:40:40,961 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb' 2025-12-08T19:40:40,965 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb' 2025-12-08T19:40:40,968 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb' 2025-12-08T19:40:40,973 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb' 2025-12-08T19:40:40,979 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb' 2025-12-08T19:40:40,983 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb' 2025-12-08T19:40:40,987 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb' 2025-12-08T19:40:40,991 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb' 2025-12-08T19:40:40,995 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb' 2025-12-08T19:40:40,999 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb' 2025-12-08T19:40:41,003 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb' 2025-12-08T19:40:41,007 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb' 2025-12-08T19:40:41,011 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb' 2025-12-08T19:40:41,015 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb' 2025-12-08T19:40:41,020 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb' 2025-12-08T19:40:41,026 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb' 2025-12-08T19:40:41,030 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb' 2025-12-08T19:40:41,034 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb' 2025-12-08T19:40:41,038 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb' 2025-12-08T19:40:41,042 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb' 2025-12-08T19:40:41,046 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb' 2025-12-08T19:40:41,049 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb' 2025-12-08T19:40:41,053 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb' 2025-12-08T19:40:41,057 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb' 2025-12-08T19:40:41,061 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb' 2025-12-08T19:40:41,065 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb' 2025-12-08T19:40:41,069 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb' 2025-12-08T19:40:41,072 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb' 2025-12-08T19:40:41,076 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb' 2025-12-08T19:40:41,080 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb' 2025-12-08T19:40:41,084 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb' 2025-12-08T19:40:41,087 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb' 2025-12-08T19:40:41,091 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb' 2025-12-08T19:40:41,095 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb' 2025-12-08T19:40:41,099 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb' 2025-12-08T19:40:41,103 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb' 2025-12-08T19:40:41,107 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb' 2025-12-08T19:40:41,111 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb' 2025-12-08T19:40:41,114 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb' 2025-12-08T19:40:41,118 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb' 2025-12-08T19:40:41,122 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb' 2025-12-08T19:40:41,126 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb' 2025-12-08T19:40:41,130 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb' 2025-12-08T19:40:41,134 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb' 2025-12-08T19:40:41,137 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb' 2025-12-08T19:40:41,141 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb' 2025-12-08T19:40:41,145 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb' 2025-12-08T19:40:41,148 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb' 2025-12-08T19:40:41,152 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb' 2025-12-08T19:40:41,156 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb' 2025-12-08T19:40:41,160 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb' 2025-12-08T19:40:41,164 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb' 2025-12-08T19:40:41,167 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb' 2025-12-08T19:40:41,171 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb' 2025-12-08T19:40:41,175 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb' 2025-12-08T19:40:41,179 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb' 2025-12-08T19:40:41,183 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb' 2025-12-08T19:40:41,187 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb' 2025-12-08T19:40:41,190 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb' 2025-12-08T19:40:41,194 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb' 2025-12-08T19:40:41,198 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb' 2025-12-08T19:40:41,202 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb' 2025-12-08T19:40:41,206 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb' 2025-12-08T19:40:41,210 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb' 2025-12-08T19:40:41,213 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb' 2025-12-08T19:40:41,217 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb' 2025-12-08T19:40:41,221 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb' 2025-12-08T19:40:41,224 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb' 2025-12-08T19:40:41,228 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb' 2025-12-08T19:40:41,232 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb' 2025-12-08T19:40:41,236 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb' 2025-12-08T19:40:41,240 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb' 2025-12-08T19:40:41,243 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb' 2025-12-08T19:40:41,247 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb' 2025-12-08T19:40:41,251 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb' 2025-12-08T19:40:41,254 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb' 2025-12-08T19:40:41,258 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb' 2025-12-08T19:40:41,262 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb' 2025-12-08T19:40:41,266 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb' 2025-12-08T19:40:41,270 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb' 2025-12-08T19:40:41,273 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb' 2025-12-08T19:40:41,277 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb' 2025-12-08T19:40:41,281 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb' 2025-12-08T19:40:41,285 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb' 2025-12-08T19:40:41,289 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb' 2025-12-08T19:40:41,292 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb' 2025-12-08T19:40:41,296 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb' 2025-12-08T19:40:41,302 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb' 2025-12-08T19:40:41,306 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb' 2025-12-08T19:40:41,310 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb' 2025-12-08T19:40:41,314 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb' 2025-12-08T19:40:41,318 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb' 2025-12-08T19:40:41,321 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb' 2025-12-08T19:40:41,325 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb' 2025-12-08T19:40:41,329 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb' 2025-12-08T19:40:41,333 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb' 2025-12-08T19:40:41,337 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb' 2025-12-08T19:40:41,341 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb' 2025-12-08T19:40:41,345 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb' 2025-12-08T19:40:41,349 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb' 2025-12-08T19:40:41,352 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb' 2025-12-08T19:40:41,356 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb' 2025-12-08T19:40:41,360 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb' 2025-12-08T19:40:41,364 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb' 2025-12-08T19:40:41,368 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb' 2025-12-08T19:40:41,372 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb' 2025-12-08T19:40:41,376 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb' 2025-12-08T19:40:41,379 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb' 2025-12-08T19:40:41,383 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb' 2025-12-08T19:40:41,387 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb' 2025-12-08T19:40:41,391 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb' 2025-12-08T19:40:41,394 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb' 2025-12-08T19:40:41,399 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb' 2025-12-08T19:40:41,402 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb' 2025-12-08T19:40:41,406 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb' 2025-12-08T19:40:41,413 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb' 2025-12-08T19:40:41,416 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb' 2025-12-08T19:40:41,419 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb' 2025-12-08T19:40:41,423 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb' 2025-12-08T19:40:41,426 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb' 2025-12-08T19:40:41,430 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb' 2025-12-08T19:40:41,433 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb' 2025-12-08T19:40:41,437 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb' 2025-12-08T19:40:41,440 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb' 2025-12-08T19:40:41,443 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb' 2025-12-08T19:40:41,447 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb' 2025-12-08T19:40:41,450 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb' 2025-12-08T19:40:41,453 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb' 2025-12-08T19:40:41,457 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb' 2025-12-08T19:40:41,460 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb' 2025-12-08T19:40:41,464 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb' 2025-12-08T19:40:41,467 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb' 2025-12-08T19:40:41,471 adding 'rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb' 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adding 'rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb' 2025-12-08T19:40:44,741 adding 'rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb' 2025-12-08T19:40:44,747 adding 'rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb' 2025-12-08T19:40:44,751 adding 'rna_tools/tools/mq/RNAscore/RNAscore.py' 2025-12-08T19:40:44,753 adding 'rna_tools/tools/mq/RNAscore/__init__.py' 2025-12-08T19:40:44,758 adding 'rna_tools/tools/mq/SimRNA/SimRNA.py' 2025-12-08T19:40:44,760 adding 'rna_tools/tools/mq/SimRNA/__init__.py' 2025-12-08T19:40:44,763 adding 'rna_tools/tools/mq/SimRNA/rna_mq_simrna.py' 2025-12-08T19:40:44,765 adding 'rna_tools/tools/mq/SimRNA/test.sh' 2025-12-08T19:40:44,781 adding 'rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb' 2025-12-08T19:40:44,784 adding 'rna_tools/tools/mq/SimRNA/test/output.csv' 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adding 'rna_tools/tools/rna_filter/rna_pairs_diff.py' 2025-12-08T19:40:55,595 adding 'rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py' 2025-12-08T19:40:55,598 adding 'rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py' 2025-12-08T19:40:55,601 adding 'rna_tools/tools/rna_filter/rna_ss_get_bps.py' 2025-12-08T19:40:55,605 adding 'rna_tools/tools/rna_filter/simrna_get_restraints.py' 2025-12-08T19:40:55,608 adding 'rna_tools/tools/rna_filter/test.sh' 2025-12-08T19:40:55,611 adding 'rna_tools/tools/rna_filter/test_dca.sh' 2025-12-08T19:40:55,614 adding 'rna_tools/tools/rna_filter/test_rna_filter.py' 2025-12-08T19:40:55,619 adding 'rna_tools/tools/rna_filter/test_data/CG.pdb' 2025-12-08T19:40:55,622 adding 'rna_tools/tools/rna_filter/test_data/CG.trafl' 2025-12-08T19:40:55,626 adding 'rna_tools/tools/rna_filter/test_data/restraints.txt' 2025-12-08T19:40:55,629 adding 'rna_tools/tools/rna_filter/test_data/rna_filter.txt' 2025-12-08T19:40:55,633 adding 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2025-12-08T19:41:05,456 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png' 2025-12-08T19:41:05,459 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png' 2025-12-08T19:41:05,462 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png' 2025-12-08T19:41:05,466 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png' 2025-12-08T19:41:05,470 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png' 2025-12-08T19:41:05,474 adding 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2025-12-08T19:41:05,642 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js' 2025-12-08T19:41:05,648 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css' 2025-12-08T19:41:05,653 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif' 2025-12-08T19:41:05,656 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif' 2025-12-08T19:41:05,660 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif' 2025-12-08T19:41:05,663 adding 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'rna_tools-3.25.data/scripts/rna_clarna2graph.py' 2025-12-08T19:41:08,759 adding 'rna_tools-3.25.data/scripts/rna_clarna_app.py' 2025-12-08T19:41:08,772 adding 'rna_tools-3.25.data/scripts/rna_clarna_compare.py' 2025-12-08T19:41:08,785 adding 'rna_tools-3.25.data/scripts/rna_clarna_run.py' 2025-12-08T19:41:08,789 adding 'rna_tools-3.25.data/scripts/rna_dG2kd.py' 2025-12-08T19:41:08,793 adding 'rna_tools-3.25.data/scripts/rna_df_concat.py' 2025-12-08T19:41:08,796 adding 'rna_tools-3.25.data/scripts/rna_df_csv_sort.py' 2025-12-08T19:41:08,799 adding 'rna_tools-3.25.data/scripts/rna_df_merge.py' 2025-12-08T19:41:08,803 adding 'rna_tools-3.25.data/scripts/rna_df_merge_on.py' 2025-12-08T19:41:08,807 adding 'rna_tools-3.25.data/scripts/rna_df_merge_two.py' 2025-12-08T19:41:08,810 adding 'rna_tools-3.25.data/scripts/rna_dict2fasta.py' 2025-12-08T19:41:08,814 adding 'rna_tools-3.25.data/scripts/rna_dot2ct.py' 2025-12-08T19:41:08,817 adding 'rna_tools-3.25.data/scripts/rna_download_rfam.py' 2025-12-08T19:41:08,821 adding 'rna_tools-3.25.data/scripts/rna_draw_edges.py' 2025-12-08T19:41:08,824 adding 'rna_tools-3.25.data/scripts/rna_ec2x.py' 2025-12-08T19:41:08,830 adding 'rna_tools-3.25.data/scripts/rna_filter.py' 2025-12-08T19:41:08,833 adding 'rna_tools-3.25.data/scripts/rna_gromacs_ready.py' 2025-12-08T19:41:08,837 adding 'rna_tools-3.25.data/scripts/rna_helix_vis.py' 2025-12-08T19:41:08,840 adding 'rna_tools-3.25.data/scripts/rna_kd2dG.py' 2025-12-08T19:41:08,843 adding 'rna_tools-3.25.data/scripts/rna_kd2pkd.py' 2025-12-08T19:41:08,848 adding 'rna_tools-3.25.data/scripts/rna_md.py' 2025-12-08T19:41:08,851 adding 'rna_tools-3.25.data/scripts/rna_minimize.py' 2025-12-08T19:41:08,855 adding 'rna_tools-3.25.data/scripts/rna_mq_analyzegeometry.py' 2025-12-08T19:41:08,858 adding 'rna_tools-3.25.data/scripts/rna_mq_clashscore.py' 2025-12-08T19:41:08,866 adding 'rna_tools-3.25.data/scripts/rna_mq_collect.py' 2025-12-08T19:41:08,870 adding 'rna_tools-3.25.data/scripts/rna_mq_dfire.py' 2025-12-08T19:41:08,873 adding 'rna_tools-3.25.data/scripts/rna_mq_eSCORE.py' 2025-12-08T19:41:08,877 adding 'rna_tools-3.25.data/scripts/rna_mq_exp.py' 2025-12-08T19:41:08,881 adding 'rna_tools-3.25.data/scripts/rna_mq_farfar2.py' 2025-12-08T19:41:08,885 adding 'rna_tools-3.25.data/scripts/rna_mq_farna.py' 2025-12-08T19:41:08,888 adding 'rna_tools-3.25.data/scripts/rna_mq_plot.py' 2025-12-08T19:41:08,892 adding 'rna_tools-3.25.data/scripts/rna_mq_rasp.py' 2025-12-08T19:41:08,895 adding 'rna_tools-3.25.data/scripts/rna_mq_remote.sh' 2025-12-08T19:41:08,898 adding 'rna_tools-3.25.data/scripts/rna_mq_rna3dcnn.py' 2025-12-08T19:41:08,901 adding 'rna_tools-3.25.data/scripts/rna_mq_rnakb.py' 2025-12-08T19:41:08,905 adding 'rna_tools-3.25.data/scripts/rna_mq_rsRNASP.py' 2025-12-08T19:41:08,908 adding 'rna_tools-3.25.data/scripts/rna_mq_score.py' 2025-12-08T19:41:08,913 adding 'rna_tools-3.25.data/scripts/rna_mq_simrna.py' 2025-12-08T19:41:08,916 adding 'rna_tools-3.25.data/scripts/rna_mq_wx_collect.py' 2025-12-08T19:41:08,919 adding 'rna_tools-3.25.data/scripts/rna_ok' 2025-12-08T19:41:08,923 adding 'rna_tools-3.25.data/scripts/rna_ok_mail.py' 2025-12-08T19:41:08,926 adding 'rna_tools-3.25.data/scripts/rna_pairs2SimRNArestrs.py' 2025-12-08T19:41:08,930 adding 'rna_tools-3.25.data/scripts/rna_pairs_diff.py' 2025-12-08T19:41:08,934 adding 'rna_tools-3.25.data/scripts/rna_pdb_edit_occupancy_bfactor.py' 2025-12-08T19:41:08,937 adding 'rna_tools-3.25.data/scripts/rna_pdb_fetch_header.py' 2025-12-08T19:41:08,941 adding 'rna_tools-3.25.data/scripts/rna_pdb_inspect.py' 2025-12-08T19:41:08,944 adding 'rna_tools-3.25.data/scripts/rna_pdb_merge_into_one.py' 2025-12-08T19:41:08,948 adding 'rna_tools-3.25.data/scripts/rna_pdb_merge_structure_with_fragments.py' 2025-12-08T19:41:08,951 adding 'rna_tools-3.25.data/scripts/rna_pdb_replace.py' 2025-12-08T19:41:08,964 adding 'rna_tools-3.25.data/scripts/rna_pdb_tools.py' 2025-12-08T19:41:08,969 adding 'rna_tools-3.25.data/scripts/rna_pk_simrna_to_one_line.py' 2025-12-08T19:41:08,972 adding 'rna_tools-3.25.data/scripts/rna_pkd2dG.py' 2025-12-08T19:41:08,975 adding 'rna_tools-3.25.data/scripts/rna_pkd2kd.py' 2025-12-08T19:41:08,979 adding 'rna_tools-3.25.data/scripts/rna_plot_boxplotlike.py' 2025-12-08T19:41:08,982 adding 'rna_tools-3.25.data/scripts/rna_plot_dendogram.py' 2025-12-08T19:41:08,986 adding 'rna_tools-3.25.data/scripts/rna_plot_density.py' 2025-12-08T19:41:08,989 adding 'rna_tools-3.25.data/scripts/rna_plot_heatmap.py' 2025-12-08T19:41:08,992 adding 'rna_tools-3.25.data/scripts/rna_plot_hist.py' 2025-12-08T19:41:08,996 adding 'rna_tools-3.25.data/scripts/rna_prediction_significance.py' 2025-12-08T19:41:09,000 adding 'rna_tools-3.25.data/scripts/rna_refinement.py' 2025-12-08T19:41:09,004 adding 'rna_tools-3.25.data/scripts/rna_rosetta_check_progress.py' 2025-12-08T19:41:09,008 adding 'rna_tools-3.25.data/scripts/rna_rosetta_cluster.py' 2025-12-08T19:41:09,012 adding 'rna_tools-3.25.data/scripts/rna_rosetta_extract.py' 2025-12-08T19:41:09,015 adding 'rna_tools-3.25.data/scripts/rna_rosetta_extract_lowscore_decoys.py' 2025-12-08T19:41:09,019 adding 'rna_tools-3.25.data/scripts/rna_rosetta_get_score.py' 2025-12-08T19:41:09,022 adding 'rna_tools-3.25.data/scripts/rna_rosetta_head.py' 2025-12-08T19:41:09,027 adding 'rna_tools-3.25.data/scripts/rna_rosetta_min.py' 2025-12-08T19:41:09,030 adding 'rna_tools-3.25.data/scripts/rna_rosetta_n.py' 2025-12-08T19:41:09,035 adding 'rna_tools-3.25.data/scripts/rna_rosetta_run.py' 2025-12-08T19:41:09,039 adding 'rna_tools-3.25.data/scripts/rna_rosetta_silent_file_sort_and_select.py' 2025-12-08T19:41:09,042 adding 'rna_tools-3.25.data/scripts/rna_rosetta_silent_random.py' 2025-12-08T19:41:09,046 adding 'rna_tools-3.25.data/scripts/rna_rosetta_silent_split.py' 2025-12-08T19:41:09,049 adding 'rna_tools-3.25.data/scripts/rna_sali2dotbracket.py' 2025-12-08T19:41:09,053 adding 'rna_tools-3.25.data/scripts/rna_secondary_structure_prediction.py' 2025-12-08T19:41:09,056 adding 'rna_tools-3.25.data/scripts/rna_simrna_cluster.py' 2025-12-08T19:41:09,060 adding 'rna_tools-3.25.data/scripts/rna_simrna_extract.py' 2025-12-08T19:41:09,064 adding 'rna_tools-3.25.data/scripts/rna_simrna_lowest.py' 2025-12-08T19:41:09,069 adding 'rna_tools-3.25.data/scripts/rna_simrnaweb_download_job.py' 2025-12-08T19:41:09,072 adding 'rna_tools-3.25.data/scripts/rna_ss_get_bps.py' 2025-12-08T19:41:09,077 adding 'rna_tools-3.25.data/scripts/rna_standardize.py' 2025-12-08T19:41:09,080 adding 'rna_tools-3.25.data/scripts/rna_test_cuda.py' 2025-12-08T19:41:09,083 adding 'rna_tools-3.25.data/scripts/rna_tools_demo.py' 2025-12-08T19:41:09,086 adding 'rna_tools-3.25.data/scripts/rna_tools_which.py' 2025-12-08T19:41:09,090 adding 'rna_tools-3.25.data/scripts/rna_torsions.py' 2025-12-08T19:41:09,093 adding 'rna_tools-3.25.data/scripts/rna_traj_n.py' 2025-12-08T19:41:09,097 adding 'rna_tools-3.25.data/scripts/rna_traj_nohetm.py' 2025-12-08T19:41:09,100 adding 'rna_tools-3.25.data/scripts/rna_traj_range.py' 2025-12-08T19:41:09,104 adding 'rna_tools-3.25.data/scripts/rna_workflow.py' 2025-12-08T19:41:09,109 adding 'rna_tools-3.25.data/scripts/rna_x3dna.py' 2025-12-08T19:41:09,113 adding 'rna_tools-3.25.data/scripts/select_seq_fromBLAStn_6outfm.py' 2025-12-08T19:41:09,116 adding 'rna_tools-3.25.data/scripts/translate.py' 2025-12-08T19:41:09,122 adding 'rna_tools-3.25.data/scripts/triplexibility.py' 2025-12-08T19:41:09,129 adding 'rna_tools-3.25.data/scripts/triplexibility2.py' 2025-12-08T19:41:09,132 adding 'rna_tools-3.25.data/scripts/trx_mutagen.py' 2025-12-08T19:41:09,136 adding 'rna_tools-3.25.data/scripts/trx_mutagen_allvsall.py' 2025-12-08T19:41:09,140 adding 'rna_tools-3.25.data/scripts/trx_score.py' 2025-12-08T19:41:09,143 adding 'rna_tools-3.25.data/scripts/trx_score_allvsall.py' 2025-12-08T19:41:09,147 adding 'rna_tools-3.25.data/scripts/trx_score_onCol.py' 2025-12-08T19:41:09,166 adding 'rna_tools-3.25.dist-info/licenses/LICENSE' 2025-12-08T19:41:09,172 adding 'tests/__init__.py' 2025-12-08T19:41:09,175 adding 'tests/test_module.py' 2025-12-08T19:41:09,185 adding 'rna_tools-3.25.dist-info/METADATA' 2025-12-08T19:41:09,189 adding 'rna_tools-3.25.dist-info/WHEEL' 2025-12-08T19:41:09,191 adding 'rna_tools-3.25.dist-info/top_level.txt' 2025-12-08T19:41:09,272 adding 'rna_tools-3.25.dist-info/RECORD' 2025-12-08T19:41:09,760 removing build/bdist.linux-armv7l/wheel 2025-12-08T19:41:10,754 Traceback (most recent call last): 2025-12-08T19:41:10,755 File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2025-12-08T19:41:10,765 dist.run_commands() 2025-12-08T19:41:10,765 File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 1002, in run_commands 2025-12-08T19:41:10,768 self.run_command(cmd) 2025-12-08T19:41:10,769 File "/usr/local/lib/python3.9/dist-packages/setuptools/dist.py", line 1102, in run_command 2025-12-08T19:41:10,772 super().run_command(command) 2025-12-08T19:41:10,773 File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/dist.py", line 1021, in run_command 2025-12-08T19:41:10,776 cmd_obj.run() 2025-12-08T19:41:10,777 File "/usr/local/lib/python3.9/dist-packages/setuptools/command/bdist_wheel.py", line 453, in run 2025-12-08T19:41:10,781 _shutil.rmtree(self.bdist_dir) 2025-12-08T19:41:10,782 File "/usr/local/lib/python3.9/dist-packages/setuptools/_shutil.py", line 48, in rmtree 2025-12-08T19:41:10,784 return py311.shutil_rmtree(path, ignore_errors, onexc) 2025-12-08T19:41:10,785 File "/usr/local/lib/python3.9/dist-packages/setuptools/compat/py311.py", line 27, in shutil_rmtree 2025-12-08T19:41:10,789 return shutil.rmtree(path, ignore_errors, onerror=_handler) 2025-12-08T19:41:10,790 File "/usr/lib/python3.9/shutil.py", line 718, in rmtree 2025-12-08T19:41:10,793 _rmtree_safe_fd(fd, path, onerror) 2025-12-08T19:41:10,794 File "/usr/lib/python3.9/shutil.py", line 655, in _rmtree_safe_fd 2025-12-08T19:41:10,796 _rmtree_safe_fd(dirfd, fullname, onerror) 2025-12-08T19:41:10,797 File "/usr/lib/python3.9/shutil.py", line 655, in _rmtree_safe_fd 2025-12-08T19:41:10,799 _rmtree_safe_fd(dirfd, fullname, onerror) 2025-12-08T19:41:10,799 File "/usr/lib/python3.9/shutil.py", line 655, in _rmtree_safe_fd 2025-12-08T19:41:10,802 _rmtree_safe_fd(dirfd, fullname, onerror) 2025-12-08T19:41:10,802 [Previous line repeated 1 more time] 2025-12-08T19:41:10,803 File "/usr/lib/python3.9/shutil.py", line 659, in _rmtree_safe_fd 2025-12-08T19:41:10,805 onerror(os.rmdir, fullname, sys.exc_info()) 2025-12-08T19:41:10,806 File "/usr/local/lib/python3.9/dist-packages/setuptools/compat/py311.py", line 25, in _handler 2025-12-08T19:41:10,806 onexc(fn, path, excinfo[1]) 2025-12-08T19:41:10,807 File "/usr/local/lib/python3.9/dist-packages/setuptools/_shutil.py", line 40, in _auto_chmod 2025-12-08T19:41:10,807 raise exc 2025-12-08T19:41:10,808 File "/usr/lib/python3.9/shutil.py", line 657, in _rmtree_safe_fd 2025-12-08T19:41:10,809 os.rmdir(entry.name, dir_fd=topfd) 2025-12-08T19:41:10,809 OSError: [Errno 39] Directory not empty: 'tl' 2025-12-08T19:41:10,810 During handling of the above exception, another exception occurred: 2025-12-08T19:41:10,811 Traceback (most recent call last): 2025-12-08T19:41:10,811 File "/usr/local/lib/python3.9/dist-packages/setuptools/build_meta.py", line 404, in _build_with_temp_dir 2025-12-08T19:41:10,813 self.run_setup() 2025-12-08T19:41:10,814 File "/usr/local/lib/python3.9/dist-packages/setuptools/build_meta.py", line 317, in run_setup 2025-12-08T19:41:10,817 exec(code, locals()) 2025-12-08T19:41:10,817 File "", line 8, in 2025-12-08T19:41:10,820 File "/usr/local/lib/python3.9/dist-packages/setuptools/__init__.py", line 115, in setup 2025-12-08T19:41:10,823 return distutils.core.setup(**attrs) 2025-12-08T19:41:10,824 File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2025-12-08T19:41:10,825 return run_commands(dist) 2025-12-08T19:41:10,826 File "/usr/local/lib/python3.9/dist-packages/setuptools/_distutils/core.py", line 210, in run_commands 2025-12-08T19:41:10,828 raise SystemExit(f"error: {exc}") 2025-12-08T19:41:10,828 SystemExit: error: [Errno 39] Directory not empty: 'tl' 2025-12-08T19:41:10,829 During handling of the above exception, another exception occurred: 2025-12-08T19:41:10,830 Traceback (most recent call last): 2025-12-08T19:41:10,831 File "/tmp/tmpmnoa944j_in_process.py", line 280, in 2025-12-08T19:41:10,832 main() 2025-12-08T19:41:10,833 File "/tmp/tmpmnoa944j_in_process.py", line 263, in main 2025-12-08T19:41:10,835 json_out['return_val'] = hook(**hook_input['kwargs']) 2025-12-08T19:41:10,836 File "/tmp/tmpmnoa944j_in_process.py", line 204, in build_wheel 2025-12-08T19:41:10,837 return _build_backend().build_wheel(wheel_directory, config_settings, 2025-12-08T19:41:10,838 File "/usr/local/lib/python3.9/dist-packages/setuptools/build_meta.py", line 435, in build_wheel 2025-12-08T19:41:10,840 return _build(['bdist_wheel', '--dist-info-dir', str(metadata_directory)]) 2025-12-08T19:41:10,841 File "/usr/local/lib/python3.9/dist-packages/setuptools/build_meta.py", line 423, in _build 2025-12-08T19:41:10,843 return self._build_with_temp_dir( 2025-12-08T19:41:10,843 File "/usr/local/lib/python3.9/dist-packages/setuptools/build_meta.py", line 411, in _build_with_temp_dir 2025-12-08T19:41:10,845 os.rename(os.path.join(tmp_dist_dir, result_basename), result_path) 2025-12-08T19:41:10,846 File "/usr/lib/python3.9/tempfile.py", line 974, in __exit__ 2025-12-08T19:41:10,848 self.cleanup() 2025-12-08T19:41:10,848 File "/usr/lib/python3.9/tempfile.py", line 978, in cleanup 2025-12-08T19:41:10,850 self._rmtree(self.name) 2025-12-08T19:41:10,851 File "/usr/lib/python3.9/tempfile.py", line 960, in _rmtree 2025-12-08T19:41:10,852 _rmtree(name, onerror=onerror) 2025-12-08T19:41:10,853 File "/usr/lib/python3.9/shutil.py", line 722, in rmtree 2025-12-08T19:41:10,854 onerror(os.rmdir, path, sys.exc_info()) 2025-12-08T19:41:10,855 File "/usr/lib/python3.9/shutil.py", line 720, in rmtree 2025-12-08T19:41:10,856 os.rmdir(path) 2025-12-08T19:41:10,857 OSError: [Errno 39] Directory not empty: '/tmp/pip-wheel-r7s6t4kh/.tmp-zqywrgex' 2025-12-08T19:41:11,039 Building wheel for rna-tools (PEP 517): finished with status 'error' 2025-12-08T19:41:11,044 ERROR: Failed building wheel for rna-tools 2025-12-08T19:41:11,576 Failed to build rna-tools 2025-12-08T19:41:11,576 ERROR: Failed to build one or more wheels 2025-12-08T19:41:11,578 Exception information: 2025-12-08T19:41:11,578 Traceback (most recent call last): 2025-12-08T19:41:11,578 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 223, in _main 2025-12-08T19:41:11,578 status = self.run(options, args) 2025-12-08T19:41:11,578 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 180, in wrapper 2025-12-08T19:41:11,578 return func(self, options, args) 2025-12-08T19:41:11,578 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 194, in run 2025-12-08T19:41:11,578 raise CommandError( 2025-12-08T19:41:11,578 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-12-08T19:41:11,586 Removed build tracker: '/tmp/pip-req-tracker-23g2a_ew'