2025-12-09T13:30:30,142 Created temporary directory: /tmp/pip-ephem-wheel-cache-8nx7z6_v 2025-12-09T13:30:30,144 Created temporary directory: /tmp/pip-build-tracker-b1jlnca_ 2025-12-09T13:30:30,144 Initialized build tracking at /tmp/pip-build-tracker-b1jlnca_ 2025-12-09T13:30:30,145 Created build tracker: /tmp/pip-build-tracker-b1jlnca_ 2025-12-09T13:30:30,145 Entered build tracker: /tmp/pip-build-tracker-b1jlnca_ 2025-12-09T13:30:30,146 Created temporary directory: /tmp/pip-wheel-5z08wdxm 2025-12-09T13:30:30,149 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-09T13:30:30,152 Created temporary directory: /tmp/pip-ephem-wheel-cache-6xrvil_a 2025-12-09T13:30:30,173 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-09T13:30:30,177 2 location(s) to search for versions of py-semtools: 2025-12-09T13:30:30,177 * https://pypi.org/simple/py-semtools/ 2025-12-09T13:30:30,177 * https://www.piwheels.org/simple/py-semtools/ 2025-12-09T13:30:30,178 Fetching project page and analyzing links: https://pypi.org/simple/py-semtools/ 2025-12-09T13:30:30,178 Getting page https://pypi.org/simple/py-semtools/ 2025-12-09T13:30:30,180 Found index url https://pypi.org/simple 2025-12-09T13:30:30,393 Fetched page https://pypi.org/simple/py-semtools/ as application/vnd.pypi.simple.v1+json 2025-12-09T13:30:30,396 Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/9e/91/d3dcbccb20de4901a7c17a89e484805f6eb931fd94997ee4a6371274ad54/py_semtools-1.0.0-py3-none-any.whl (from https://pypi.org/simple/py-semtools/) 2025-12-09T13:30:30,397 Found link https://files.pythonhosted.org/packages/92/99/7c7b949ff077f199d9860c6e18208898730c91a5ed4067648d59803660c9/py_semtools-1.0.0.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.0.0 2025-12-09T13:30:30,398 Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/03/91/07795e2c37bf072331b1929b1e5d9f3efda5c6ad9b681646a57db3d877c3/py_semtools-1.0.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/) 2025-12-09T13:30:30,398 Found link https://files.pythonhosted.org/packages/20/5a/cd42c5bce40fe864eee951abea020789308e4c918cf468e8be8b9efdfb9b/py_semtools-1.0.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.0.1 2025-12-09T13:30:30,399 Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/ae/8a/5ba9e4b8670a8d925f8ee52ccf997f87c53d2d6a69b27c4ad76392ac17c1/py_semtools-1.2.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/) 2025-12-09T13:30:30,400 Found link https://files.pythonhosted.org/packages/b4/84/87d081d03ef3e4a62528ae0926e2a34f8ca7cd10e1f578d5c4bf49e6ee45/py_semtools-1.2.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.2.1 2025-12-09T13:30:30,400 Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/95/60/c813d5bd83c47fb4626f08d560fe56a7d1dd814494cfddf8c3e5ed0a0fe0/py_semtools-1.3-py3-none-any.whl (from https://pypi.org/simple/py-semtools/) 2025-12-09T13:30:30,401 Found link https://files.pythonhosted.org/packages/11/4a/e1302ebdac699b7160f04425568ab11f0a54d87f4eaf0ccc09eb5c62f571/py_semtools-1.3.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3 2025-12-09T13:30:30,401 Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/66/ea/bb985794a40893bb870945504ca73f1713d9b559d2eb795430f39dea83eb/py_semtools-1.3.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/) 2025-12-09T13:30:30,402 Found link https://files.pythonhosted.org/packages/fc/b7/2e452149be5ed3c3dfbf578ce73ffa29e020138e3210c7775118faeb2b93/py_semtools-1.3.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.1 2025-12-09T13:30:30,403 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-semtools/ 2025-12-09T13:30:30,404 Getting page https://www.piwheels.org/simple/py-semtools/ 2025-12-09T13:30:30,405 Found index url https://www.piwheels.org/simple 2025-12-09T13:30:30,567 Fetched page https://www.piwheels.org/simple/py-semtools/ as text/html 2025-12-09T13:30:30,569 Skipping link: No binaries permitted for py-semtools: https://www.piwheels.org/simple/py-semtools/py_semtools-1.3-py3-none-any.whl#sha256=23f122980bf343c095689e7a3941bc0985138294de2ddfd688259690f1f69945 (from https://www.piwheels.org/simple/py-semtools/) 2025-12-09T13:30:30,570 Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.2.1-py3-none-any.whl#sha256=213013f51320994c82556ab69f10781b631dac00db9ee0cbfa9089bc6545eb75 (from https://www.piwheels.org/simple/py-semtools/) 2025-12-09T13:30:30,570 Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.0.1-py3-none-any.whl#sha256=b8d9c0404cf4d9ecff5ccd2a401fcd13b9a6d8c82e8bddb2a4d816d1b5a84b53 (from https://www.piwheels.org/simple/py-semtools/) 2025-12-09T13:30:30,571 Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.0.0-py3-none-any.whl#sha256=ac317638b1ee685f80cf79ff3cf9fba3766e6b6cd754a6575d5bb634d446d14c (from https://www.piwheels.org/simple/py-semtools/) 2025-12-09T13:30:30,571 Skipping link: not a file: https://www.piwheels.org/simple/py-semtools/ 2025-12-09T13:30:30,572 Skipping link: not a file: https://pypi.org/simple/py-semtools/ 2025-12-09T13:30:30,591 Given no hashes to check 1 links for project 'py-semtools': discarding no candidates 2025-12-09T13:30:30,609 Collecting py-semtools==1.3.1 2025-12-09T13:30:30,611 Created temporary directory: /tmp/pip-unpack-0m0vyoqf 2025-12-09T13:30:30,748 Downloading py_semtools-1.3.1.tar.gz (7.9 MB) 2025-12-09T13:30:32,824 Added py-semtools==1.3.1 from https://files.pythonhosted.org/packages/fc/b7/2e452149be5ed3c3dfbf578ce73ffa29e020138e3210c7775118faeb2b93/py_semtools-1.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-b1jlnca_' 2025-12-09T13:30:32,828 Created temporary directory: /tmp/pip-build-env-xqeeqtig 2025-12-09T13:30:32,833 Installing build dependencies: started 2025-12-09T13:30:32,834 Running command pip subprocess to install build dependencies 2025-12-09T13:30:33,948 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-09T13:30:34,565 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-09T13:30:34,588 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-09T13:30:36,326 Collecting setuptools>=46.1.0 2025-12-09T13:30:36,418 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-09T13:30:36,795 Collecting setuptools_scm[toml]>=5 2025-12-09T13:30:36,812 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-12-09T13:30:36,997 Collecting packaging>=20 2025-12-09T13:30:37,013 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-09T13:30:39,953 Installing collected packages: setuptools, packaging, setuptools_scm 2025-12-09T13:30:43,881 Creating /tmp/pip-build-env-xqeeqtig/overlay/local/bin 2025-12-09T13:30:43,883 changing mode of /tmp/pip-build-env-xqeeqtig/overlay/local/bin/setuptools-scm to 755 2025-12-09T13:30:43,906 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 2025-12-09T13:30:44,183 Installing build dependencies: finished with status 'done' 2025-12-09T13:30:44,189 Getting requirements to build wheel: started 2025-12-09T13:30:44,190 Running command Getting requirements to build wheel 2025-12-09T13:30:44,929 running egg_info 2025-12-09T13:30:44,937 writing src/py_semtools.egg-info/PKG-INFO 2025-12-09T13:30:44,942 writing dependency_links to src/py_semtools.egg-info/dependency_links.txt 2025-12-09T13:30:44,944 writing entry points to src/py_semtools.egg-info/entry_points.txt 2025-12-09T13:30:44,946 writing requirements to src/py_semtools.egg-info/requires.txt 2025-12-09T13:30:44,948 writing top-level names to src/py_semtools.egg-info/top_level.txt 2025-12-09T13:30:45,016 listing git files failed - pretending there aren't any 2025-12-09T13:30:45,021 reading manifest file 'src/py_semtools.egg-info/SOURCES.txt' 2025-12-09T13:30:45,043 reading manifest template 'MANIFEST.in' 2025-12-09T13:30:45,044 warning: no files found matching 'py_semtools/external_data/ontologies.txt' 2025-12-09T13:30:45,045 adding license file 'LICENSE.txt' 2025-12-09T13:30:45,052 writing manifest file 'src/py_semtools.egg-info/SOURCES.txt' 2025-12-09T13:30:45,145 Getting requirements to build wheel: finished with status 'done' 2025-12-09T13:30:45,148 Created temporary directory: /tmp/pip-modern-metadata-l580bbj0 2025-12-09T13:30:45,150 Preparing metadata (pyproject.toml): started 2025-12-09T13:30:45,152 Running command Preparing metadata (pyproject.toml) 2025-12-09T13:30:45,807 running dist_info 2025-12-09T13:30:45,822 creating /tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info 2025-12-09T13:30:45,823 writing /tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/PKG-INFO 2025-12-09T13:30:45,828 writing dependency_links to /tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/dependency_links.txt 2025-12-09T13:30:45,830 writing entry points to /tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/entry_points.txt 2025-12-09T13:30:45,833 writing requirements to /tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/requires.txt 2025-12-09T13:30:45,834 writing top-level names to /tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/top_level.txt 2025-12-09T13:30:45,835 writing manifest file '/tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/SOURCES.txt' 2025-12-09T13:30:45,897 listing git files failed - pretending there aren't any 2025-12-09T13:30:45,901 reading manifest file '/tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/SOURCES.txt' 2025-12-09T13:30:45,903 reading manifest template 'MANIFEST.in' 2025-12-09T13:30:45,904 warning: no files found matching 'py_semtools/external_data/ontologies.txt' 2025-12-09T13:30:45,905 adding license file 'LICENSE.txt' 2025-12-09T13:30:45,908 writing manifest file '/tmp/pip-modern-metadata-l580bbj0/py_semtools.egg-info/SOURCES.txt' 2025-12-09T13:30:45,909 creating '/tmp/pip-modern-metadata-l580bbj0/py_semtools-1.3.1.dist-info' 2025-12-09T13:30:46,046 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-09T13:30:46,051 Source in /tmp/pip-wheel-5z08wdxm/py-semtools_c2a8380a129a4ebdb512bbe7ba5bd795 has version 1.3.1, which satisfies requirement py-semtools==1.3.1 from https://files.pythonhosted.org/packages/fc/b7/2e452149be5ed3c3dfbf578ce73ffa29e020138e3210c7775118faeb2b93/py_semtools-1.3.1.tar.gz 2025-12-09T13:30:46,052 Removed py-semtools==1.3.1 from https://files.pythonhosted.org/packages/fc/b7/2e452149be5ed3c3dfbf578ce73ffa29e020138e3210c7775118faeb2b93/py_semtools-1.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-b1jlnca_' 2025-12-09T13:30:46,056 Created temporary directory: /tmp/pip-unpack-owujsb7t 2025-12-09T13:30:46,057 Building wheels for collected packages: py-semtools 2025-12-09T13:30:46,061 Created temporary directory: /tmp/pip-wheel-ial4v8c2 2025-12-09T13:30:46,062 Destination directory: /tmp/pip-wheel-ial4v8c2 2025-12-09T13:30:46,064 Building wheel for py-semtools (pyproject.toml): started 2025-12-09T13:30:46,065 Running command Building wheel for py-semtools (pyproject.toml) 2025-12-09T13:30:46,710 running bdist_wheel 2025-12-09T13:30:46,744 running build 2025-12-09T13:30:46,745 running build_py 2025-12-09T13:30:46,756 creating build/lib/py_semtools 2025-12-09T13:30:46,758 copying src/py_semtools/ontology.py -> build/lib/py_semtools 2025-12-09T13:30:46,762 copying src/py_semtools/sim_handler.py -> build/lib/py_semtools 2025-12-09T13:30:46,764 copying src/py_semtools/__init__.py -> build/lib/py_semtools 2025-12-09T13:30:46,766 copying src/py_semtools/stEngine.py -> build/lib/py_semtools 2025-12-09T13:30:46,769 copying src/py_semtools/cli_manager.py -> build/lib/py_semtools 2025-12-09T13:30:46,771 copying src/py_semtools/main_modules.py -> build/lib/py_semtools 2025-12-09T13:30:46,774 copying src/py_semtools/report_ont.py -> build/lib/py_semtools 2025-12-09T13:30:46,777 copying src/py_semtools/parallelizer.py -> build/lib/py_semtools 2025-12-09T13:30:46,781 creating build/lib/py_semtools/indexers 2025-12-09T13:30:46,782 copying src/py_semtools/indexers/text_indexer.py -> build/lib/py_semtools/indexers 2025-12-09T13:30:46,785 creating build/lib/py_semtools/parsers/text 2025-12-09T13:30:46,787 copying src/py_semtools/parsers/text/text_pubmed_parser.py -> build/lib/py_semtools/parsers/text 2025-12-09T13:30:46,789 copying src/py_semtools/parsers/text/text_basic_parser.py -> build/lib/py_semtools/parsers/text 2025-12-09T13:30:46,791 copying src/py_semtools/parsers/text/text_pubmed_abstract_parser.py -> build/lib/py_semtools/parsers/text 2025-12-09T13:30:46,793 copying src/py_semtools/parsers/text/text_pubmed_paper_parser.py -> build/lib/py_semtools/parsers/text 2025-12-09T13:30:46,796 creating build/lib/py_semtools/parsers/ont 2025-12-09T13:30:46,797 copying src/py_semtools/parsers/ont/file_parser.py -> build/lib/py_semtools/parsers/ont 2025-12-09T13:30:46,799 copying src/py_semtools/parsers/ont/oboparser.py -> build/lib/py_semtools/parsers/ont 2025-12-09T13:30:46,801 copying src/py_semtools/parsers/ont/json_parser.py -> build/lib/py_semtools/parsers/ont 2025-12-09T13:30:46,803 running egg_info 2025-12-09T13:30:46,817 writing src/py_semtools.egg-info/PKG-INFO 2025-12-09T13:30:46,821 writing dependency_links to src/py_semtools.egg-info/dependency_links.txt 2025-12-09T13:30:46,823 writing entry points to src/py_semtools.egg-info/entry_points.txt 2025-12-09T13:30:46,825 writing requirements to src/py_semtools.egg-info/requires.txt 2025-12-09T13:30:46,826 writing top-level names to src/py_semtools.egg-info/top_level.txt 2025-12-09T13:30:46,869 listing git files failed - pretending there aren't any 2025-12-09T13:30:46,873 reading manifest file 'src/py_semtools.egg-info/SOURCES.txt' 2025-12-09T13:30:46,883 reading manifest template 'MANIFEST.in' 2025-12-09T13:30:46,884 warning: no files found matching 'py_semtools/external_data/ontologies.txt' 2025-12-09T13:30:46,884 adding license file 'LICENSE.txt' 2025-12-09T13:30:46,891 writing manifest file 'src/py_semtools.egg-info/SOURCES.txt' 2025-12-09T13:30:46,902 creating build/lib/py_semtools/templates 2025-12-09T13:30:46,903 copying src/py_semtools/templates/comorb_sugg.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,906 copying src/py_semtools/templates/makeTermFreqTable.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,908 copying src/py_semtools/templates/ontoICdist.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,910 copying src/py_semtools/templates/ontodist.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,912 copying src/py_semtools/templates/ontoplot.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,915 copying src/py_semtools/templates/plotClust.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,917 copying src/py_semtools/templates/plotProfRed.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,919 copying src/py_semtools/templates/report.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,922 copying src/py_semtools/templates/similarity_heatmap.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,924 copying src/py_semtools/templates/similarity_matrix.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,926 copying src/py_semtools/templates/stEngine.txt -> build/lib/py_semtools/templates 2025-12-09T13:30:46,928 creating build/lib/py_semtools/external_data 2025-12-09T13:30:46,929 copying src/py_semtools/external_data/ontologies.txt -> build/lib/py_semtools/external_data 2025-12-09T13:30:46,950 installing to build/bdist.linux-armv7l/wheel 2025-12-09T13:30:46,951 running install 2025-12-09T13:30:46,974 running install_lib 2025-12-09T13:30:46,983 creating build/bdist.linux-armv7l/wheel 2025-12-09T13:30:46,985 creating build/bdist.linux-armv7l/wheel/py_semtools 2025-12-09T13:30:46,987 creating build/bdist.linux-armv7l/wheel/py_semtools/parsers 2025-12-09T13:30:46,989 creating build/bdist.linux-armv7l/wheel/py_semtools/parsers/text 2025-12-09T13:30:46,990 copying build/lib/py_semtools/parsers/text/text_pubmed_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text 2025-12-09T13:30:46,993 copying build/lib/py_semtools/parsers/text/text_basic_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text 2025-12-09T13:30:46,995 copying build/lib/py_semtools/parsers/text/text_pubmed_abstract_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text 2025-12-09T13:30:46,997 copying build/lib/py_semtools/parsers/text/text_pubmed_paper_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text 2025-12-09T13:30:47,000 creating build/bdist.linux-armv7l/wheel/py_semtools/parsers/ont 2025-12-09T13:30:47,001 copying build/lib/py_semtools/parsers/ont/file_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont 2025-12-09T13:30:47,003 copying build/lib/py_semtools/parsers/ont/oboparser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont 2025-12-09T13:30:47,006 copying build/lib/py_semtools/parsers/ont/json_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont 2025-12-09T13:30:47,009 creating build/bdist.linux-armv7l/wheel/py_semtools/templates 2025-12-09T13:30:47,010 copying build/lib/py_semtools/templates/stEngine.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,013 copying build/lib/py_semtools/templates/plotClust.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,015 copying build/lib/py_semtools/templates/report.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,017 copying build/lib/py_semtools/templates/plotProfRed.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,019 copying build/lib/py_semtools/templates/similarity_heatmap.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,021 copying build/lib/py_semtools/templates/makeTermFreqTable.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,023 copying build/lib/py_semtools/templates/ontodist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,024 copying build/lib/py_semtools/templates/ontoICdist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,027 copying build/lib/py_semtools/templates/comorb_sugg.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,029 copying build/lib/py_semtools/templates/ontoplot.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,032 copying build/lib/py_semtools/templates/similarity_matrix.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates 2025-12-09T13:30:47,034 copying build/lib/py_semtools/ontology.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,039 creating build/bdist.linux-armv7l/wheel/py_semtools/external_data 2025-12-09T13:30:47,040 copying build/lib/py_semtools/external_data/ontologies.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/external_data 2025-12-09T13:30:47,043 creating build/bdist.linux-armv7l/wheel/py_semtools/indexers 2025-12-09T13:30:47,044 copying build/lib/py_semtools/indexers/text_indexer.py -> build/bdist.linux-armv7l/wheel/./py_semtools/indexers 2025-12-09T13:30:47,047 copying build/lib/py_semtools/sim_handler.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,050 copying build/lib/py_semtools/__init__.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,052 copying build/lib/py_semtools/stEngine.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,054 copying build/lib/py_semtools/cli_manager.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,057 copying build/lib/py_semtools/main_modules.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,060 copying build/lib/py_semtools/report_ont.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,063 copying build/lib/py_semtools/parallelizer.py -> build/bdist.linux-armv7l/wheel/./py_semtools 2025-12-09T13:30:47,065 running install_egg_info 2025-12-09T13:30:47,076 Copying src/py_semtools.egg-info to build/bdist.linux-armv7l/wheel/./py_semtools-1.3.1-py3.11.egg-info 2025-12-09T13:30:47,089 running install_scripts 2025-12-09T13:30:47,101 creating build/bdist.linux-armv7l/wheel/py_semtools-1.3.1.dist-info/WHEEL 2025-12-09T13:30:47,104 creating '/tmp/pip-wheel-ial4v8c2/.tmp-k31fbcv0/py_semtools-1.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-09T13:30:47,106 adding 'py_semtools/__init__.py' 2025-12-09T13:30:47,111 adding 'py_semtools/cli_manager.py' 2025-12-09T13:30:47,117 adding 'py_semtools/main_modules.py' 2025-12-09T13:30:47,128 adding 'py_semtools/ontology.py' 2025-12-09T13:30:47,131 adding 'py_semtools/parallelizer.py' 2025-12-09T13:30:47,134 adding 'py_semtools/report_ont.py' 2025-12-09T13:30:47,136 adding 'py_semtools/sim_handler.py' 2025-12-09T13:30:47,139 adding 'py_semtools/stEngine.py' 2025-12-09T13:30:47,141 adding 'py_semtools/external_data/ontologies.txt' 2025-12-09T13:30:47,144 adding 'py_semtools/indexers/text_indexer.py' 2025-12-09T13:30:47,147 adding 'py_semtools/parsers/ont/file_parser.py' 2025-12-09T13:30:47,149 adding 'py_semtools/parsers/ont/json_parser.py' 2025-12-09T13:30:47,152 adding 'py_semtools/parsers/ont/oboparser.py' 2025-12-09T13:30:47,155 adding 'py_semtools/parsers/text/text_basic_parser.py' 2025-12-09T13:30:47,157 adding 'py_semtools/parsers/text/text_pubmed_abstract_parser.py' 2025-12-09T13:30:47,159 adding 'py_semtools/parsers/text/text_pubmed_paper_parser.py' 2025-12-09T13:30:47,161 adding 'py_semtools/parsers/text/text_pubmed_parser.py' 2025-12-09T13:30:47,163 adding 'py_semtools/templates/comorb_sugg.txt' 2025-12-09T13:30:47,165 adding 'py_semtools/templates/makeTermFreqTable.txt' 2025-12-09T13:30:47,166 adding 'py_semtools/templates/ontoICdist.txt' 2025-12-09T13:30:47,168 adding 'py_semtools/templates/ontodist.txt' 2025-12-09T13:30:47,170 adding 'py_semtools/templates/ontoplot.txt' 2025-12-09T13:30:47,171 adding 'py_semtools/templates/plotClust.txt' 2025-12-09T13:30:47,173 adding 'py_semtools/templates/plotProfRed.txt' 2025-12-09T13:30:47,175 adding 'py_semtools/templates/report.txt' 2025-12-09T13:30:47,176 adding 'py_semtools/templates/similarity_heatmap.txt' 2025-12-09T13:30:47,178 adding 'py_semtools/templates/similarity_matrix.txt' 2025-12-09T13:30:47,179 adding 'py_semtools/templates/stEngine.txt' 2025-12-09T13:30:47,182 adding 'py_semtools-1.3.1.dist-info/licenses/LICENSE.txt' 2025-12-09T13:30:47,184 adding 'py_semtools-1.3.1.dist-info/METADATA' 2025-12-09T13:30:47,186 adding 'py_semtools-1.3.1.dist-info/WHEEL' 2025-12-09T13:30:47,187 adding 'py_semtools-1.3.1.dist-info/entry_points.txt' 2025-12-09T13:30:47,188 adding 'py_semtools-1.3.1.dist-info/top_level.txt' 2025-12-09T13:30:47,190 adding 'py_semtools-1.3.1.dist-info/RECORD' 2025-12-09T13:30:47,193 removing build/bdist.linux-armv7l/wheel 2025-12-09T13:30:47,301 Building wheel for py-semtools (pyproject.toml): finished with status 'done' 2025-12-09T13:30:47,308 Created wheel for py-semtools: filename=py_semtools-1.3.1-py3-none-any.whl size=85052 sha256=c349189ed341192e50e37bc67ada76922201282b3cbf568a4b799c4b4c513629 2025-12-09T13:30:47,309 Stored in directory: /tmp/pip-ephem-wheel-cache-6xrvil_a/wheels/db/6a/98/2226b4c14dc78f3230323d5fcbe6a86348e1c8cb2260a07554 2025-12-09T13:30:47,321 Successfully built py-semtools 2025-12-09T13:30:47,326 Removed build tracker: '/tmp/pip-build-tracker-b1jlnca_'