2025-12-09T17:01:51,610 Created temporary directory: /tmp/pip-ephem-wheel-cache-7fgh7w8a 2025-12-09T17:01:51,612 Created temporary directory: /tmp/pip-build-tracker-s_4bmjtu 2025-12-09T17:01:51,613 Initialized build tracking at /tmp/pip-build-tracker-s_4bmjtu 2025-12-09T17:01:51,613 Created build tracker: /tmp/pip-build-tracker-s_4bmjtu 2025-12-09T17:01:51,614 Entered build tracker: /tmp/pip-build-tracker-s_4bmjtu 2025-12-09T17:01:51,615 Created temporary directory: /tmp/pip-wheel-723wuv3a 2025-12-09T17:01:51,618 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-09T17:01:51,620 Created temporary directory: /tmp/pip-ephem-wheel-cache-foej5kc6 2025-12-09T17:01:51,642 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-09T17:01:51,645 2 location(s) to search for versions of multiqc: 2025-12-09T17:01:51,645 * https://pypi.org/simple/multiqc/ 2025-12-09T17:01:51,645 * https://www.piwheels.org/simple/multiqc/ 2025-12-09T17:01:51,646 Fetching project page and analyzing links: https://pypi.org/simple/multiqc/ 2025-12-09T17:01:51,647 Getting page https://pypi.org/simple/multiqc/ 2025-12-09T17:01:51,648 Found index url https://pypi.org/simple 2025-12-09T17:01:51,877 Fetched page https://pypi.org/simple/multiqc/ as application/vnd.pypi.simple.v1+json 2025-12-09T17:01:51,892 Found link https://files.pythonhosted.org/packages/44/ae/59e74780d4c66afbbac9053d2b6b0f12aaef94e4ce92cb00b71a20025098/multiqc-0.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.1 2025-12-09T17:01:51,893 Found link https://files.pythonhosted.org/packages/e9/7c/14ca085189df0aaba25054bf42fe3ceb74bcbee5c271d4c6f9c9c39bf1c0/multiqc-0.2.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.2.0 2025-12-09T17:01:51,894 Found link https://files.pythonhosted.org/packages/5d/cd/08627e78e84acc038dcab2ee6403af9eca73b1203fe505645a2c33c316b0/multiqc-0.3.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.0 2025-12-09T17:01:51,895 Found link https://files.pythonhosted.org/packages/47/bb/3339d0a27891c241de1bcc76122e779b67efad072140224a02e8700e5199/multiqc-0.3.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.1 2025-12-09T17:01:51,895 Found link https://files.pythonhosted.org/packages/e5/56/76229fca10700a78fe4a51baf2de7385509a48c7d281f42d9d311a547d76/multiqc-0.3.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.3.2 2025-12-09T17:01:51,896 Found link https://files.pythonhosted.org/packages/1c/e0/1e14407025dd461f1917354af543dcd912b669729ce77e0e0d29879d146e/multiqc-0.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.4 2025-12-09T17:01:51,897 Found link https://files.pythonhosted.org/packages/08/1c/d9833670aee1303332713f456140730a7a8335cc97bc7aa3c67f37a3b0e1/multiqc-0.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.5 2025-12-09T17:01:51,898 Found link https://files.pythonhosted.org/packages/23/d9/95a5e62eea95f220007d7a6683d0da1ee1d9f99e6932bcff793b6601ef15/multiqc-0.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.6 2025-12-09T17:01:51,899 Found link https://files.pythonhosted.org/packages/6b/b7/839b0c84448856bd3b2e8c381c4778c4b9c22ded890881d1cd12f9e686fa/multiqc-0.7.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.7 2025-12-09T17:01:51,899 Found link https://files.pythonhosted.org/packages/ab/e4/9a9eea1facbc3dcb7c90e38d3719eea43d4877aa54a887726982f1ba1671/multiqc-0.8.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.8 2025-12-09T17:01:51,900 Found link https://files.pythonhosted.org/packages/ca/7b/b65089cad82caa2618298482c6c80967bb22aca5f64a50df91f0a2888172/multiqc-0.9.tar.gz (from https://pypi.org/simple/multiqc/), version: 0.9 2025-12-09T17:01:51,901 Found link https://files.pythonhosted.org/packages/61/79/92c1b7d04f87bf70405cbcd24ae059abd509b19b13b469934125311dbf9f/multiqc-1.0.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.0 2025-12-09T17:01:51,902 Found link https://files.pythonhosted.org/packages/a0/7c/bb475d750a39917218d48fd592be147bbe47f76f6afaeda84e350bd973fb/multiqc-1.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.1 2025-12-09T17:01:51,903 Found link https://files.pythonhosted.org/packages/7e/c5/5b7e713b892ceadfdb23afe74acd9f246298f880fa96a304276a235422b4/multiqc-1.2.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.2 2025-12-09T17:01:51,903 Found link https://files.pythonhosted.org/packages/2c/af/1183857d4f2ade150fb2e22282ff11e6f5355419d129ca4ee7200022177f/multiqc-1.3.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.3 2025-12-09T17:01:51,904 Found link https://files.pythonhosted.org/packages/af/a1/5c5702c4b0ce9ee6fb7d1c982cc6f20832a85bfce184dcb8178f0bdcb5df/multiqc-1.4.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.4 2025-12-09T17:01:51,904 Found link https://files.pythonhosted.org/packages/fa/3e/fbdcbaebadad2110eed3b4212ced58617cbd9badbfc728c5eabc53916b84/multiqc-1.5.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.5 2025-12-09T17:01:51,905 Found link https://files.pythonhosted.org/packages/0c/00/1fd8c0cc80531bf51a1a2b15928a408b0e8a442a6e59236edc2a76371284/multiqc-1.6.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.6 2025-12-09T17:01:51,905 Found link https://files.pythonhosted.org/packages/6b/c7/817d8ef024866e00625d94bbfa26e7a4131eedc166b3d65d7f54ebc90ed6/multiqc-1.7.tar.gz (from 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permitted for multiqc: https://files.pythonhosted.org/packages/87/80/2e648984b8080fd65cb7c8eaa948a90ce74e8391828e6f7bdd4d0d137242/multiqc-1.10.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,910 Found link https://files.pythonhosted.org/packages/ca/e7/549a185924157e427b951ac741c1312ee4b324be9585ad323617bb3077a4/multiqc-1.10.1.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.10.1 2025-12-09T17:01:51,910 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/2e/2a/4332775300481391ea5a7a1f35406f83f5812a2734eff5987c462c7e1ec7/multiqc-1.11-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,911 Found link https://files.pythonhosted.org/packages/22/23/3f94ffb423762201bcccf0e0cbf821fccf75673a9fedfb3e7c7ea491024d/multiqc-1.11.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.11 2025-12-09T17:01:51,912 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/08/74/23d79b7df154d5742e5b25b9cdf3cc352445290d90c7cc5fb770ba9911a4/multiqc-1.12-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,912 Found link https://files.pythonhosted.org/packages/6a/f0/122025f4521fd085c07d7a706f08819b4c6bed9e62cfe99453f8c5968ab9/multiqc-1.12.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.12 2025-12-09T17:01:51,913 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/1a/37/35f769e2be82ba3760a62a1cb39af42beee5334efa40cc7e151626e03c91/multiqc-1.13-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,914 Found link https://files.pythonhosted.org/packages/7b/cd/cbd2df3bf899f79ec4b20d5807262dfd3b6ce02245e852ece8dcdad250b1/multiqc-1.13.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.13 2025-12-09T17:01:51,915 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/11/4c/0f85a278cd37406f195115e38281478e9933c50f389b7c4d989af42cb9d1/multiqc-1.14-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,915 Found link https://files.pythonhosted.org/packages/ae/bb/3cb9d23ba28eb96a479161230626e3a11a04fc99899ac341ec949bc38bcb/multiqc-1.14.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.14 2025-12-09T17:01:51,916 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/cd/ef0884f0abb38c9662b11f212f463cdb022ef504c512719ccf13d4c728eb/multiqc-1.15-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,916 Found link https://files.pythonhosted.org/packages/ff/96/4ea623b57fef48f6b6c0a89757d53f7b4482b1ab950501617177d5c4a979/multiqc-1.15.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.15 2025-12-09T17:01:51,917 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/e0/6b/f6b8380c75a069c079c7b60b17d1cc0ec1c67a3c9623cfe4ee41a73fa9b4/multiqc-1.16-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,917 Found link https://files.pythonhosted.org/packages/36/3d/cc530c0cdd5c9dfd4e197c8147efa69c7da18023e8ef23d6daba4ac4e13c/multiqc-1.16.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.16 2025-12-09T17:01:51,918 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/a1/a5/2ee5d2546f04ef6addd930de9b772a6ee32151d4632319cde64aef822d50/multiqc-1.17-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,918 Found link https://files.pythonhosted.org/packages/e9/0d/2fc684e101ec6ce82ea5c1eaad1a0ab202fd08f50bee5847ef9e8168b7ad/multiqc-1.17.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.17 2025-12-09T17:01:51,919 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/ec/28/0e526e176fde109e06f0409e940e10893bc2e6e7d5cf91a44a3cf8ea214e/multiqc-1.18-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,920 Found link https://files.pythonhosted.org/packages/a5/17/6ed4268d6bc06489add671e5acbb7d429c97b99391b20d964689044cda77/multiqc-1.18.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.18 2025-12-09T17:01:51,921 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/d6/89/c164b49532afaf3308f809de48c519108592d0b204e368dca2a93b1b956b/multiqc-1.19-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,921 Found link https://files.pythonhosted.org/packages/1d/7c/0b3882a0916151b7877faef0f80ca403e1a7f4fc82b875b2dca32cdb8b89/multiqc-1.19.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.19 2025-12-09T17:01:51,922 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/6e/38/ec1edb7d5337c1bf4763e7ef0bb167ce14802742dff618a2fad3f251fb84/multiqc-1.20-py3-none-any.whl (from https://pypi.org/simple/multiqc/) 2025-12-09T17:01:51,922 Found link https://files.pythonhosted.org/packages/8c/c2/6016a7cb33e904a2637da26065a45198f8ed88bc9461d30a177c130360f8/multiqc-1.20.tar.gz (from https://pypi.org/simple/multiqc/), version: 1.20 2025-12-09T17:01:51,923 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/05/93/f3d9efa1c949050e73a504e350a2f399bcc6c7db30e132e7469ce30cc36c/multiqc-1.21-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2025-12-09T17:01:51,924 Found link https://files.pythonhosted.org/packages/d7/4a/69fa3d76fb71a50c3f0f22a5b4d3fd6db3956f631862804f6524b66122d6/multiqc-1.21.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.21 2025-12-09T17:01:51,925 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/81/bc/5780dd13065676e4b1befca4345e18734a71ebc4f11db0cc1b4b3f325c36/multiqc-1.22-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2025-12-09T17:01:51,926 Found link https://files.pythonhosted.org/packages/b4/60/ed18675ca283a2c7469308399789240f31f2f6f340ed192f264993361a83/multiqc-1.22.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22 2025-12-09T17:01:51,927 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f6/12/f2dc24575e39d559e759aa02b4fb63d5e1e1a025420d08c497346b229e9c/multiqc-1.22.1-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2025-12-09T17:01:51,928 Found link https://files.pythonhosted.org/packages/6e/fa/2f25f892aaa7ef113f18c546ecdf3439fddd1ab1bfbc2bcd113b9ed2e3b6/multiqc-1.22.1.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.1 2025-12-09T17:01:51,928 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/65/b7/e3d91164ae9c94ffea6b66db2cf831a6cdde01880a834449eaaa8dc10e75/multiqc-1.22.2-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2025-12-09T17:01:51,929 Found link https://files.pythonhosted.org/packages/66/cb/0231ed0141cdd68b1dde84027232c0d4aaf4f8ef79187a2de2246e1d83e9/multiqc-1.22.2.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.2 2025-12-09T17:01:51,930 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/7f/ac/ab3d945b8b3baf29336797b0e42cead352af0750b793ccb6ac03e0ca5442/multiqc-1.22.3-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2025-12-09T17:01:51,931 Found link https://files.pythonhosted.org/packages/5d/fd/c56e8f84adc8f33f141a21523a2d23f6e4fce5720937e0eef9d11723eb80/multiqc-1.22.3.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.22.3 2025-12-09T17:01:51,931 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/f2/ca/5f71192b9c9e1db785f17be34cfacfbf398ad1d93f0d88c3a7640586db1e/multiqc-1.23-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2025-12-09T17:01:51,933 Found link https://files.pythonhosted.org/packages/56/07/06d03641b939dbcc938241fbe7086064aa230615777604e01d8fd2577800/multiqc-1.23.tar.gz (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8), version: 1.23 2025-12-09T17:01:51,933 Skipping link: No binaries permitted for multiqc: https://files.pythonhosted.org/packages/70/47/ba71ed113c96221ce33113baaeac9d75a21e1dd0b5c76eb378ab6a61f87b/multiqc-1.24-py3-none-any.whl (from https://pypi.org/simple/multiqc/) (requires-python:>=3.8) 2025-12-09T17:01:51,934 Found link https://files.pythonhosted.org/packages/11/03/990e857673088ee1f15f846a51a3eeca2fc72d50c9ccde44c0469e9a8ef0/multiqc-1.24.tar.gz (from 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2025-12-09T17:01:52,145 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.2-py3-none-any.whl#sha256=a2d3ab5bfec00fcaeb2b6b02477683cb026b7e803238094f6ba5706e9911e5db (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,145 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.1-py3-none-any.whl#sha256=17b18b185ba21595f7b6ab85364b590b11f5b90666bedd3fef8779d986b8783b (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,146 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-1.0-py3-none-any.whl#sha256=24119737c52e447f7913e17ef08e0a0e7218dd10ac535aa8eddb5181906eca44 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,146 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.9-py3-none-any.whl#sha256=8e08076a99a715a117ba6a56d8d23be94585467dff12235fde06aa32894f3588 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,147 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.8-py3-none-any.whl#sha256=24d31f7b916c4c11cb816a515f858d222d26027a5938cef4f0c3f52ad37e3329 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,147 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.7-py3-none-any.whl#sha256=27df9fe1e307b2b16f157f3a1548b69b44f18346fdd66794327008ade6ab90db (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,148 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.6-py3-none-any.whl#sha256=14044c5aa5f26ae68a9f1c47423f113e7a0d3e95d5b16dd4dcad1df4f7621982 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,148 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.5-py3-none-any.whl#sha256=5528eef1c13487a576717815ce7548964978e93f4668d414eb835d0267cd84ff (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,149 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.4-py3-none-any.whl#sha256=f67c3af42d83144411f956e962f736ef90b3e1946dd279ae47720a5142dd9a23 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,150 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.2-py3-none-any.whl#sha256=ca3e9c65ab5f1290d0e5ce999ac078ec0b75633ac8b64bc38f79d41a442f0147 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,150 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.1-py3-none-any.whl#sha256=e3fcc96c755277a57d0e7b1b8fac3256ff45b164d7a77655e169f54983470565 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,151 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.3.0-py3-none-any.whl#sha256=d1c8d281f8a75ded36ccdafbc131072a3ee9a5ddd896d32dd22f9945141a6b12 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,151 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.2.0-py3-none-any.whl#sha256=1ec95a9f8508ed8aee9eb0c6f7f3f77f6d477bf1405395854a1e2a1d2b5ea053 (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,152 Skipping link: No binaries permitted for multiqc: https://archive1.piwheels.org/simple/multiqc/multiqc-0.1-py3-none-any.whl#sha256=aadbe1a0321716289d4557925ecb20ef7bb769a99c42ac213284f8c0af4eb0ea (from https://www.piwheels.org/simple/multiqc/) 2025-12-09T17:01:52,153 Skipping link: not a file: https://www.piwheels.org/simple/multiqc/ 2025-12-09T17:01:52,153 Skipping link: not a file: https://pypi.org/simple/multiqc/ 2025-12-09T17:01:52,178 Given no hashes to check 1 links for project 'multiqc': discarding no candidates 2025-12-09T17:01:52,196 Collecting multiqc==1.33 2025-12-09T17:01:52,199 Created temporary directory: /tmp/pip-unpack-br1is89f 2025-12-09T17:01:52,334 Downloading multiqc-1.33.tar.gz (5.4 MB) 2025-12-09T17:01:55,510 Added multiqc==1.33 from https://files.pythonhosted.org/packages/26/b0/be000ab5acbcd14e7f4d402cebd2235c34cc7753008a11a115dc4175d4fb/multiqc-1.33.tar.gz to build tracker '/tmp/pip-build-tracker-s_4bmjtu' 2025-12-09T17:01:55,522 Created temporary directory: /tmp/pip-build-env-2nafgrvo 2025-12-09T17:01:55,526 Installing build dependencies: started 2025-12-09T17:01:55,527 Running command pip subprocess to install build dependencies 2025-12-09T17:01:56,664 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-09T17:01:57,297 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-09T17:01:57,319 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-09T17:01:59,020 Collecting setuptools 2025-12-09T17:01:59,106 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-09T17:02:02,014 Installing collected packages: setuptools 2025-12-09T17:02:05,952 Successfully installed setuptools-80.9.0 2025-12-09T17:02:06,215 Installing build dependencies: finished with status 'done' 2025-12-09T17:02:06,222 Getting requirements to build wheel: started 2025-12-09T17:02:06,224 Running command Getting requirements to build wheel 2025-12-09T17:02:06,905 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-09T17:02:06,906 !! 2025-12-09T17:02:06,907 ******************************************************************************** 2025-12-09T17:02:06,907 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-09T17:02:06,908 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-09T17:02:06,909 or your builds will no longer be supported. 2025-12-09T17:02:06,910 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:06,911 ******************************************************************************** 2025-12-09T17:02:06,912 !! 2025-12-09T17:02:06,912 corresp(dist, value, root_dir) 2025-12-09T17:02:07,005 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-09T17:02:07,006 !! 2025-12-09T17:02:07,007 ******************************************************************************** 2025-12-09T17:02:07,008 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-09T17:02:07,009 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-12-09T17:02:07,010 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:07,010 ******************************************************************************** 2025-12-09T17:02:07,011 !! 2025-12-09T17:02:07,011 dist._finalize_license_expression() 2025-12-09T17:02:07,014 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-09T17:02:07,014 !! 2025-12-09T17:02:07,015 ******************************************************************************** 2025-12-09T17:02:07,015 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-09T17:02:07,016 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-12-09T17:02:07,017 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:07,017 ******************************************************************************** 2025-12-09T17:02:07,018 !! 2025-12-09T17:02:07,019 self._finalize_license_expression() 2025-12-09T17:02:07,025 running egg_info 2025-12-09T17:02:07,033 writing multiqc.egg-info/PKG-INFO 2025-12-09T17:02:07,045 writing dependency_links to multiqc.egg-info/dependency_links.txt 2025-12-09T17:02:07,053 writing entry points to multiqc.egg-info/entry_points.txt 2025-12-09T17:02:07,059 writing requirements to multiqc.egg-info/requires.txt 2025-12-09T17:02:07,061 writing top-level names to multiqc.egg-info/top_level.txt 2025-12-09T17:02:07,085 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2025-12-09T17:02:07,269 reading manifest template 'MANIFEST.in' 2025-12-09T17:02:07,678 adding license file 'LICENSE' 2025-12-09T17:02:07,716 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2025-12-09T17:02:07,815 Getting requirements to build wheel: finished with status 'done' 2025-12-09T17:02:07,819 Created temporary directory: /tmp/pip-modern-metadata-sq1jd_ad 2025-12-09T17:02:07,821 Preparing metadata (pyproject.toml): started 2025-12-09T17:02:07,822 Running command Preparing metadata (pyproject.toml) 2025-12-09T17:02:08,399 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-09T17:02:08,400 !! 2025-12-09T17:02:08,401 ******************************************************************************** 2025-12-09T17:02:08,402 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-09T17:02:08,403 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-09T17:02:08,403 or your builds will no longer be supported. 2025-12-09T17:02:08,405 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:08,405 ******************************************************************************** 2025-12-09T17:02:08,406 !! 2025-12-09T17:02:08,407 corresp(dist, value, root_dir) 2025-12-09T17:02:08,488 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-09T17:02:08,489 !! 2025-12-09T17:02:08,490 ******************************************************************************** 2025-12-09T17:02:08,490 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-09T17:02:08,492 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-12-09T17:02:08,493 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:08,494 ******************************************************************************** 2025-12-09T17:02:08,495 !! 2025-12-09T17:02:08,496 dist._finalize_license_expression() 2025-12-09T17:02:08,496 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-09T17:02:08,497 !! 2025-12-09T17:02:08,498 ******************************************************************************** 2025-12-09T17:02:08,498 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-09T17:02:08,499 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-12-09T17:02:08,500 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:08,500 ******************************************************************************** 2025-12-09T17:02:08,501 !! 2025-12-09T17:02:08,502 self._finalize_license_expression() 2025-12-09T17:02:08,502 running dist_info 2025-12-09T17:02:08,514 creating /tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info 2025-12-09T17:02:08,515 writing /tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/PKG-INFO 2025-12-09T17:02:08,526 writing dependency_links to /tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/dependency_links.txt 2025-12-09T17:02:08,534 writing entry points to /tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/entry_points.txt 2025-12-09T17:02:08,539 writing requirements to /tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/requires.txt 2025-12-09T17:02:08,540 writing top-level names to /tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/top_level.txt 2025-12-09T17:02:08,542 writing manifest file '/tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/SOURCES.txt' 2025-12-09T17:02:08,561 reading manifest file '/tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/SOURCES.txt' 2025-12-09T17:02:08,564 reading manifest template 'MANIFEST.in' 2025-12-09T17:02:08,912 adding license file 'LICENSE' 2025-12-09T17:02:08,939 writing manifest file '/tmp/pip-modern-metadata-sq1jd_ad/multiqc.egg-info/SOURCES.txt' 2025-12-09T17:02:08,941 creating '/tmp/pip-modern-metadata-sq1jd_ad/multiqc-1.33.dist-info' 2025-12-09T17:02:09,073 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-09T17:02:09,086 Source in /tmp/pip-wheel-723wuv3a/multiqc_7f1952a0f9d94dc89d46d04ed27f6379 has version 1.33, which satisfies requirement multiqc==1.33 from https://files.pythonhosted.org/packages/26/b0/be000ab5acbcd14e7f4d402cebd2235c34cc7753008a11a115dc4175d4fb/multiqc-1.33.tar.gz 2025-12-09T17:02:09,087 Removed multiqc==1.33 from https://files.pythonhosted.org/packages/26/b0/be000ab5acbcd14e7f4d402cebd2235c34cc7753008a11a115dc4175d4fb/multiqc-1.33.tar.gz from build tracker '/tmp/pip-build-tracker-s_4bmjtu' 2025-12-09T17:02:09,106 Created temporary directory: /tmp/pip-unpack-u6u4aw6f 2025-12-09T17:02:09,107 Building wheels for collected packages: multiqc 2025-12-09T17:02:09,111 Created temporary directory: /tmp/pip-wheel-3qgwoad5 2025-12-09T17:02:09,112 Destination directory: /tmp/pip-wheel-3qgwoad5 2025-12-09T17:02:09,114 Building wheel for multiqc (pyproject.toml): started 2025-12-09T17:02:09,115 Running command Building wheel for multiqc (pyproject.toml) 2025-12-09T17:02:09,676 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-09T17:02:09,676 !! 2025-12-09T17:02:09,678 ******************************************************************************** 2025-12-09T17:02:09,678 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-09T17:02:09,680 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-09T17:02:09,680 or your builds will no longer be supported. 2025-12-09T17:02:09,681 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:09,682 ******************************************************************************** 2025-12-09T17:02:09,683 !! 2025-12-09T17:02:09,683 corresp(dist, value, root_dir) 2025-12-09T17:02:09,760 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-09T17:02:09,760 !! 2025-12-09T17:02:09,761 ******************************************************************************** 2025-12-09T17:02:09,762 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-09T17:02:09,763 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-12-09T17:02:09,764 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:09,764 ******************************************************************************** 2025-12-09T17:02:09,765 !! 2025-12-09T17:02:09,765 dist._finalize_license_expression() 2025-12-09T17:02:09,766 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-09T17:02:09,767 !! 2025-12-09T17:02:09,768 ******************************************************************************** 2025-12-09T17:02:09,768 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-09T17:02:09,769 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2025-12-09T17:02:09,771 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-09T17:02:09,771 ******************************************************************************** 2025-12-09T17:02:09,773 !! 2025-12-09T17:02:09,773 self._finalize_license_expression() 2025-12-09T17:02:09,774 running bdist_wheel 2025-12-09T17:02:09,789 running build 2025-12-09T17:02:09,790 running build_py 2025-12-09T17:02:09,797 creating build/lib/multiqc 2025-12-09T17:02:09,799 copying multiqc/config.py -> build/lib/multiqc 2025-12-09T17:02:09,802 copying multiqc/multiqc.py -> build/lib/multiqc 2025-12-09T17:02:09,805 copying multiqc/validation.py -> build/lib/multiqc 2025-12-09T17:02:09,807 copying multiqc/__init__.py -> build/lib/multiqc 2025-12-09T17:02:09,809 copying multiqc/__main__.py -> build/lib/multiqc 2025-12-09T17:02:09,811 copying multiqc/report.py -> build/lib/multiqc 2025-12-09T17:02:09,816 copying multiqc/base_module.py -> build/lib/multiqc 2025-12-09T17:02:09,819 copying multiqc/interactive.py -> build/lib/multiqc 2025-12-09T17:02:09,822 copying multiqc/types.py -> build/lib/multiqc 2025-12-09T17:02:09,824 running egg_info 2025-12-09T17:02:09,835 writing multiqc.egg-info/PKG-INFO 2025-12-09T17:02:09,846 writing dependency_links to multiqc.egg-info/dependency_links.txt 2025-12-09T17:02:09,854 writing entry points to multiqc.egg-info/entry_points.txt 2025-12-09T17:02:09,859 writing requirements to multiqc.egg-info/requires.txt 2025-12-09T17:02:09,860 writing top-level names to multiqc.egg-info/top_level.txt 2025-12-09T17:02:09,870 reading manifest file 'multiqc.egg-info/SOURCES.txt' 2025-12-09T17:02:09,914 reading manifest template 'MANIFEST.in' 2025-12-09T17:02:10,281 adding license file 'LICENSE' 2025-12-09T17:02:10,317 writing manifest file 'multiqc.egg-info/SOURCES.txt' 2025-12-09T17:02:10,320 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.core' is absent from the `packages` configuration. 2025-12-09T17:02:10,321 !! 2025-12-09T17:02:10,322 ******************************************************************************** 2025-12-09T17:02:10,323 ############################ 2025-12-09T17:02:10,323 # Package would be ignored # 2025-12-09T17:02:10,324 ############################ 2025-12-09T17:02:10,324 Python recognizes 'multiqc.core' as an importable package[^1], 2025-12-09T17:02:10,325 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,326 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,326 package, please make sure that 'multiqc.core' is explicitly added 2025-12-09T17:02:10,326 to the `packages` configuration field. 2025-12-09T17:02:10,327 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,328 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,328 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,329 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,330 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,331 If you don't want 'multiqc.core' to be distributed and are 2025-12-09T17:02:10,331 already explicitly excluding 'multiqc.core' via 2025-12-09T17:02:10,332 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,333 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,334 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,335 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,336 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,337 even if it does not contain any `.py` files. 2025-12-09T17:02:10,337 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,338 directory, all directories are treated like packages. 2025-12-09T17:02:10,338 ******************************************************************************** 2025-12-09T17:02:10,339 !! 2025-12-09T17:02:10,340 check.warn(importable) 2025-12-09T17:02:10,340 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.core.special_case_modules' is absent from the `packages` configuration. 2025-12-09T17:02:10,341 !! 2025-12-09T17:02:10,342 ******************************************************************************** 2025-12-09T17:02:10,343 ############################ 2025-12-09T17:02:10,343 # Package would be ignored # 2025-12-09T17:02:10,344 ############################ 2025-12-09T17:02:10,344 Python recognizes 'multiqc.core.special_case_modules' as an importable package[^1], 2025-12-09T17:02:10,345 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,345 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,346 package, please make sure that 'multiqc.core.special_case_modules' is explicitly added 2025-12-09T17:02:10,346 to the `packages` configuration field. 2025-12-09T17:02:10,348 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,348 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,349 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,350 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,351 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,352 If you don't want 'multiqc.core.special_case_modules' to be distributed and are 2025-12-09T17:02:10,352 already explicitly excluding 'multiqc.core.special_case_modules' via 2025-12-09T17:02:10,353 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,353 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,353 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,354 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,355 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,356 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,356 even if it does not contain any `.py` files. 2025-12-09T17:02:10,357 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,357 directory, all directories are treated like packages. 2025-12-09T17:02:10,357 ******************************************************************************** 2025-12-09T17:02:10,358 !! 2025-12-09T17:02:10,358 check.warn(importable) 2025-12-09T17:02:10,359 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules' is absent from the `packages` configuration. 2025-12-09T17:02:10,359 !! 2025-12-09T17:02:10,360 ******************************************************************************** 2025-12-09T17:02:10,360 ############################ 2025-12-09T17:02:10,361 # Package would be ignored # 2025-12-09T17:02:10,361 ############################ 2025-12-09T17:02:10,362 Python recognizes 'multiqc.modules' as an importable package[^1], 2025-12-09T17:02:10,362 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,363 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,364 package, please make sure that 'multiqc.modules' is explicitly added 2025-12-09T17:02:10,364 to the `packages` configuration field. 2025-12-09T17:02:10,366 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,366 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,366 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,368 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,369 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,369 If you don't want 'multiqc.modules' to be distributed and are 2025-12-09T17:02:10,370 already explicitly excluding 'multiqc.modules' via 2025-12-09T17:02:10,370 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,371 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,372 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,373 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,374 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,375 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,376 even if it does not contain any `.py` files. 2025-12-09T17:02:10,376 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,377 directory, all directories are treated like packages. 2025-12-09T17:02:10,377 ******************************************************************************** 2025-12-09T17:02:10,378 !! 2025-12-09T17:02:10,379 check.warn(importable) 2025-12-09T17:02:10,379 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.adapterremoval' is absent from the `packages` configuration. 2025-12-09T17:02:10,380 !! 2025-12-09T17:02:10,380 ******************************************************************************** 2025-12-09T17:02:10,381 ############################ 2025-12-09T17:02:10,381 # Package would be ignored # 2025-12-09T17:02:10,381 ############################ 2025-12-09T17:02:10,382 Python recognizes 'multiqc.modules.adapterremoval' as an importable package[^1], 2025-12-09T17:02:10,382 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,383 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,383 package, please make sure that 'multiqc.modules.adapterremoval' is explicitly added 2025-12-09T17:02:10,384 to the `packages` configuration field. 2025-12-09T17:02:10,384 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,385 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,386 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,387 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,388 If you don't want 'multiqc.modules.adapterremoval' to be distributed and are 2025-12-09T17:02:10,389 already explicitly excluding 'multiqc.modules.adapterremoval' via 2025-12-09T17:02:10,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,390 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,390 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,392 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,393 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,394 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,395 even if it does not contain any `.py` files. 2025-12-09T17:02:10,395 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,396 directory, all directories are treated like packages. 2025-12-09T17:02:10,396 ******************************************************************************** 2025-12-09T17:02:10,397 !! 2025-12-09T17:02:10,398 check.warn(importable) 2025-12-09T17:02:10,398 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.afterqc' is absent from the `packages` configuration. 2025-12-09T17:02:10,399 !! 2025-12-09T17:02:10,400 ******************************************************************************** 2025-12-09T17:02:10,400 ############################ 2025-12-09T17:02:10,401 # Package would be ignored # 2025-12-09T17:02:10,401 ############################ 2025-12-09T17:02:10,402 Python recognizes 'multiqc.modules.afterqc' as an importable package[^1], 2025-12-09T17:02:10,402 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,403 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,404 package, please make sure that 'multiqc.modules.afterqc' is explicitly added 2025-12-09T17:02:10,404 to the `packages` configuration field. 2025-12-09T17:02:10,405 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,406 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,406 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,407 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,408 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,408 If you don't want 'multiqc.modules.afterqc' to be distributed and are 2025-12-09T17:02:10,409 already explicitly excluding 'multiqc.modules.afterqc' via 2025-12-09T17:02:10,409 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,409 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,410 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,410 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,412 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,412 even if it does not contain any `.py` files. 2025-12-09T17:02:10,413 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,413 directory, all directories are treated like packages. 2025-12-09T17:02:10,414 ******************************************************************************** 2025-12-09T17:02:10,415 !! 2025-12-09T17:02:10,415 check.warn(importable) 2025-12-09T17:02:10,416 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.anglerfish' is absent from the `packages` configuration. 2025-12-09T17:02:10,417 !! 2025-12-09T17:02:10,418 ******************************************************************************** 2025-12-09T17:02:10,418 ############################ 2025-12-09T17:02:10,419 # Package would be ignored # 2025-12-09T17:02:10,419 ############################ 2025-12-09T17:02:10,420 Python recognizes 'multiqc.modules.anglerfish' as an importable package[^1], 2025-12-09T17:02:10,420 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,421 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,422 package, please make sure that 'multiqc.modules.anglerfish' is explicitly added 2025-12-09T17:02:10,422 to the `packages` configuration field. 2025-12-09T17:02:10,423 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,424 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,425 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,426 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,427 If you don't want 'multiqc.modules.anglerfish' to be distributed and are 2025-12-09T17:02:10,427 already explicitly excluding 'multiqc.modules.anglerfish' via 2025-12-09T17:02:10,428 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,428 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,429 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,430 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,431 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,432 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,432 even if it does not contain any `.py` files. 2025-12-09T17:02:10,433 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,433 directory, all directories are treated like packages. 2025-12-09T17:02:10,433 ******************************************************************************** 2025-12-09T17:02:10,434 !! 2025-12-09T17:02:10,434 check.warn(importable) 2025-12-09T17:02:10,435 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ataqv' is absent from the `packages` configuration. 2025-12-09T17:02:10,435 !! 2025-12-09T17:02:10,436 ******************************************************************************** 2025-12-09T17:02:10,436 ############################ 2025-12-09T17:02:10,436 # Package would be ignored # 2025-12-09T17:02:10,437 ############################ 2025-12-09T17:02:10,437 Python recognizes 'multiqc.modules.ataqv' as an importable package[^1], 2025-12-09T17:02:10,437 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,438 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,438 package, please make sure that 'multiqc.modules.ataqv' is explicitly added 2025-12-09T17:02:10,439 to the `packages` configuration field. 2025-12-09T17:02:10,440 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,441 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,442 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,443 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,444 If you don't want 'multiqc.modules.ataqv' to be distributed and are 2025-12-09T17:02:10,445 already explicitly excluding 'multiqc.modules.ataqv' via 2025-12-09T17:02:10,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,446 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,446 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,447 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,448 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,450 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,450 even if it does not contain any `.py` files. 2025-12-09T17:02:10,450 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,451 directory, all directories are treated like packages. 2025-12-09T17:02:10,451 ******************************************************************************** 2025-12-09T17:02:10,452 !! 2025-12-09T17:02:10,453 check.warn(importable) 2025-12-09T17:02:10,453 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bakta' is absent from the `packages` configuration. 2025-12-09T17:02:10,454 !! 2025-12-09T17:02:10,455 ******************************************************************************** 2025-12-09T17:02:10,455 ############################ 2025-12-09T17:02:10,456 # Package would be ignored # 2025-12-09T17:02:10,456 ############################ 2025-12-09T17:02:10,457 Python recognizes 'multiqc.modules.bakta' as an importable package[^1], 2025-12-09T17:02:10,457 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,458 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,459 package, please make sure that 'multiqc.modules.bakta' is explicitly added 2025-12-09T17:02:10,459 to the `packages` configuration field. 2025-12-09T17:02:10,460 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,460 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,460 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,461 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,462 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,463 If you don't want 'multiqc.modules.bakta' to be distributed and are 2025-12-09T17:02:10,463 already explicitly excluding 'multiqc.modules.bakta' via 2025-12-09T17:02:10,463 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,464 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,464 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,465 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,468 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,468 even if it does not contain any `.py` files. 2025-12-09T17:02:10,469 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,469 directory, all directories are treated like packages. 2025-12-09T17:02:10,470 ******************************************************************************** 2025-12-09T17:02:10,471 !! 2025-12-09T17:02:10,472 check.warn(importable) 2025-12-09T17:02:10,472 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bamdst' is absent from the `packages` configuration. 2025-12-09T17:02:10,473 !! 2025-12-09T17:02:10,474 ******************************************************************************** 2025-12-09T17:02:10,474 ############################ 2025-12-09T17:02:10,475 # Package would be ignored # 2025-12-09T17:02:10,475 ############################ 2025-12-09T17:02:10,476 Python recognizes 'multiqc.modules.bamdst' as an importable package[^1], 2025-12-09T17:02:10,476 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,477 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,478 package, please make sure that 'multiqc.modules.bamdst' is explicitly added 2025-12-09T17:02:10,478 to the `packages` configuration field. 2025-12-09T17:02:10,479 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,479 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,480 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,481 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,482 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,483 If you don't want 'multiqc.modules.bamdst' to be distributed and are 2025-12-09T17:02:10,484 already explicitly excluding 'multiqc.modules.bamdst' via 2025-12-09T17:02:10,484 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,485 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,485 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,486 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,487 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,488 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,488 even if it does not contain any `.py` files. 2025-12-09T17:02:10,489 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,489 directory, all directories are treated like packages. 2025-12-09T17:02:10,490 ******************************************************************************** 2025-12-09T17:02:10,490 !! 2025-12-09T17:02:10,491 check.warn(importable) 2025-12-09T17:02:10,491 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bamtools' is absent from the `packages` configuration. 2025-12-09T17:02:10,491 !! 2025-12-09T17:02:10,492 ******************************************************************************** 2025-12-09T17:02:10,493 ############################ 2025-12-09T17:02:10,493 # Package would be ignored # 2025-12-09T17:02:10,493 ############################ 2025-12-09T17:02:10,494 Python recognizes 'multiqc.modules.bamtools' as an importable package[^1], 2025-12-09T17:02:10,494 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,495 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,496 package, please make sure that 'multiqc.modules.bamtools' is explicitly added 2025-12-09T17:02:10,496 to the `packages` configuration field. 2025-12-09T17:02:10,497 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,498 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,498 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,499 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,500 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,502 If you don't want 'multiqc.modules.bamtools' to be distributed and are 2025-12-09T17:02:10,502 already explicitly excluding 'multiqc.modules.bamtools' via 2025-12-09T17:02:10,503 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,503 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,504 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,505 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,506 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,507 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,507 even if it does not contain any `.py` files. 2025-12-09T17:02:10,508 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,509 directory, all directories are treated like packages. 2025-12-09T17:02:10,509 ******************************************************************************** 2025-12-09T17:02:10,510 !! 2025-12-09T17:02:10,511 check.warn(importable) 2025-12-09T17:02:10,511 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bases2fastq' is absent from the `packages` configuration. 2025-12-09T17:02:10,512 !! 2025-12-09T17:02:10,513 ******************************************************************************** 2025-12-09T17:02:10,513 ############################ 2025-12-09T17:02:10,514 # Package would be ignored # 2025-12-09T17:02:10,514 ############################ 2025-12-09T17:02:10,515 Python recognizes 'multiqc.modules.bases2fastq' as an importable package[^1], 2025-12-09T17:02:10,515 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,516 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,516 package, please make sure that 'multiqc.modules.bases2fastq' is explicitly added 2025-12-09T17:02:10,516 to the `packages` configuration field. 2025-12-09T17:02:10,517 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,517 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,518 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,518 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,519 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,520 If you don't want 'multiqc.modules.bases2fastq' to be distributed and are 2025-12-09T17:02:10,520 already explicitly excluding 'multiqc.modules.bases2fastq' via 2025-12-09T17:02:10,521 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,521 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,522 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,523 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,526 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,526 even if it does not contain any `.py` files. 2025-12-09T17:02:10,526 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,527 directory, all directories are treated like packages. 2025-12-09T17:02:10,528 ******************************************************************************** 2025-12-09T17:02:10,529 !! 2025-12-09T17:02:10,529 check.warn(importable) 2025-12-09T17:02:10,530 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bbduk' is absent from the `packages` configuration. 2025-12-09T17:02:10,530 !! 2025-12-09T17:02:10,531 ******************************************************************************** 2025-12-09T17:02:10,532 ############################ 2025-12-09T17:02:10,532 # Package would be ignored # 2025-12-09T17:02:10,533 ############################ 2025-12-09T17:02:10,533 Python recognizes 'multiqc.modules.bbduk' as an importable package[^1], 2025-12-09T17:02:10,534 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,535 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,535 package, please make sure that 'multiqc.modules.bbduk' is explicitly added 2025-12-09T17:02:10,536 to the `packages` configuration field. 2025-12-09T17:02:10,537 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,537 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,538 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,539 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,540 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,540 If you don't want 'multiqc.modules.bbduk' to be distributed and are 2025-12-09T17:02:10,541 already explicitly excluding 'multiqc.modules.bbduk' via 2025-12-09T17:02:10,541 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,541 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,542 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,542 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,543 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,545 even if it does not contain any `.py` files. 2025-12-09T17:02:10,545 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,545 directory, all directories are treated like packages. 2025-12-09T17:02:10,546 ******************************************************************************** 2025-12-09T17:02:10,546 !! 2025-12-09T17:02:10,547 check.warn(importable) 2025-12-09T17:02:10,547 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bbmap' is absent from the `packages` configuration. 2025-12-09T17:02:10,548 !! 2025-12-09T17:02:10,548 ******************************************************************************** 2025-12-09T17:02:10,549 ############################ 2025-12-09T17:02:10,549 # Package would be ignored # 2025-12-09T17:02:10,550 ############################ 2025-12-09T17:02:10,550 Python recognizes 'multiqc.modules.bbmap' as an importable package[^1], 2025-12-09T17:02:10,551 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,553 package, please make sure that 'multiqc.modules.bbmap' is explicitly added 2025-12-09T17:02:10,553 to the `packages` configuration field. 2025-12-09T17:02:10,554 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,555 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,555 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,556 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,558 If you don't want 'multiqc.modules.bbmap' to be distributed and are 2025-12-09T17:02:10,558 already explicitly excluding 'multiqc.modules.bbmap' via 2025-12-09T17:02:10,559 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,559 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,560 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,561 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,562 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,565 even if it does not contain any `.py` files. 2025-12-09T17:02:10,565 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,566 directory, all directories are treated like packages. 2025-12-09T17:02:10,566 ******************************************************************************** 2025-12-09T17:02:10,567 !! 2025-12-09T17:02:10,568 check.warn(importable) 2025-12-09T17:02:10,568 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bcftools' is absent from the `packages` configuration. 2025-12-09T17:02:10,568 !! 2025-12-09T17:02:10,569 ******************************************************************************** 2025-12-09T17:02:10,569 ############################ 2025-12-09T17:02:10,570 # Package would be ignored # 2025-12-09T17:02:10,570 ############################ 2025-12-09T17:02:10,570 Python recognizes 'multiqc.modules.bcftools' as an importable package[^1], 2025-12-09T17:02:10,571 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,571 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,572 package, please make sure that 'multiqc.modules.bcftools' is explicitly added 2025-12-09T17:02:10,572 to the `packages` configuration field. 2025-12-09T17:02:10,573 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,574 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,575 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,576 If you don't want 'multiqc.modules.bcftools' to be distributed and are 2025-12-09T17:02:10,577 already explicitly excluding 'multiqc.modules.bcftools' via 2025-12-09T17:02:10,577 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,578 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,579 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,580 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,582 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,583 even if it does not contain any `.py` files. 2025-12-09T17:02:10,583 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,584 directory, all directories are treated like packages. 2025-12-09T17:02:10,584 ******************************************************************************** 2025-12-09T17:02:10,585 !! 2025-12-09T17:02:10,586 check.warn(importable) 2025-12-09T17:02:10,586 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bcl2fastq' is absent from the `packages` configuration. 2025-12-09T17:02:10,587 !! 2025-12-09T17:02:10,588 ******************************************************************************** 2025-12-09T17:02:10,588 ############################ 2025-12-09T17:02:10,589 # Package would be ignored # 2025-12-09T17:02:10,589 ############################ 2025-12-09T17:02:10,590 Python recognizes 'multiqc.modules.bcl2fastq' as an importable package[^1], 2025-12-09T17:02:10,590 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,592 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,592 package, please make sure that 'multiqc.modules.bcl2fastq' is explicitly added 2025-12-09T17:02:10,593 to the `packages` configuration field. 2025-12-09T17:02:10,594 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,594 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,594 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,595 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,596 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,597 If you don't want 'multiqc.modules.bcl2fastq' to be distributed and are 2025-12-09T17:02:10,597 already explicitly excluding 'multiqc.modules.bcl2fastq' via 2025-12-09T17:02:10,597 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,598 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,598 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,599 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,600 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,601 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,601 even if it does not contain any `.py` files. 2025-12-09T17:02:10,602 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,602 directory, all directories are treated like packages. 2025-12-09T17:02:10,603 ******************************************************************************** 2025-12-09T17:02:10,604 !! 2025-12-09T17:02:10,604 check.warn(importable) 2025-12-09T17:02:10,605 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bclconvert' is absent from the `packages` configuration. 2025-12-09T17:02:10,605 !! 2025-12-09T17:02:10,607 ******************************************************************************** 2025-12-09T17:02:10,607 ############################ 2025-12-09T17:02:10,608 # Package would be ignored # 2025-12-09T17:02:10,608 ############################ 2025-12-09T17:02:10,609 Python recognizes 'multiqc.modules.bclconvert' as an importable package[^1], 2025-12-09T17:02:10,609 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,611 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,611 package, please make sure that 'multiqc.modules.bclconvert' is explicitly added 2025-12-09T17:02:10,612 to the `packages` configuration field. 2025-12-09T17:02:10,613 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,613 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,613 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,614 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,615 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,616 If you don't want 'multiqc.modules.bclconvert' to be distributed and are 2025-12-09T17:02:10,617 already explicitly excluding 'multiqc.modules.bclconvert' via 2025-12-09T17:02:10,617 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,618 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,618 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,619 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,620 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,621 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,621 even if it does not contain any `.py` files. 2025-12-09T17:02:10,622 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,622 directory, all directories are treated like packages. 2025-12-09T17:02:10,622 ******************************************************************************** 2025-12-09T17:02:10,623 !! 2025-12-09T17:02:10,623 check.warn(importable) 2025-12-09T17:02:10,624 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.biobambam2' is absent from the `packages` configuration. 2025-12-09T17:02:10,624 !! 2025-12-09T17:02:10,625 ******************************************************************************** 2025-12-09T17:02:10,625 ############################ 2025-12-09T17:02:10,625 # Package would be ignored # 2025-12-09T17:02:10,626 ############################ 2025-12-09T17:02:10,626 Python recognizes 'multiqc.modules.biobambam2' as an importable package[^1], 2025-12-09T17:02:10,627 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,627 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,628 package, please make sure that 'multiqc.modules.biobambam2' is explicitly added 2025-12-09T17:02:10,628 to the `packages` configuration field. 2025-12-09T17:02:10,629 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,630 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,630 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,631 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,633 If you don't want 'multiqc.modules.biobambam2' to be distributed and are 2025-12-09T17:02:10,634 already explicitly excluding 'multiqc.modules.biobambam2' via 2025-12-09T17:02:10,635 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,635 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,636 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,637 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,639 even if it does not contain any `.py` files. 2025-12-09T17:02:10,640 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,640 directory, all directories are treated like packages. 2025-12-09T17:02:10,641 ******************************************************************************** 2025-12-09T17:02:10,642 !! 2025-12-09T17:02:10,642 check.warn(importable) 2025-12-09T17:02:10,643 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.biobloomtools' is absent from the `packages` configuration. 2025-12-09T17:02:10,643 !! 2025-12-09T17:02:10,644 ******************************************************************************** 2025-12-09T17:02:10,645 ############################ 2025-12-09T17:02:10,646 # Package would be ignored # 2025-12-09T17:02:10,646 ############################ 2025-12-09T17:02:10,646 Python recognizes 'multiqc.modules.biobloomtools' as an importable package[^1], 2025-12-09T17:02:10,647 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,647 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,648 package, please make sure that 'multiqc.modules.biobloomtools' is explicitly added 2025-12-09T17:02:10,648 to the `packages` configuration field. 2025-12-09T17:02:10,649 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,649 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,650 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,652 If you don't want 'multiqc.modules.biobloomtools' to be distributed and are 2025-12-09T17:02:10,652 already explicitly excluding 'multiqc.modules.biobloomtools' via 2025-12-09T17:02:10,652 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,653 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,653 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,654 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,655 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,656 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,657 even if it does not contain any `.py` files. 2025-12-09T17:02:10,657 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,658 directory, all directories are treated like packages. 2025-12-09T17:02:10,658 ******************************************************************************** 2025-12-09T17:02:10,659 !! 2025-12-09T17:02:10,660 check.warn(importable) 2025-12-09T17:02:10,660 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.biscuit' is absent from the `packages` configuration. 2025-12-09T17:02:10,661 !! 2025-12-09T17:02:10,662 ******************************************************************************** 2025-12-09T17:02:10,662 ############################ 2025-12-09T17:02:10,663 # Package would be ignored # 2025-12-09T17:02:10,663 ############################ 2025-12-09T17:02:10,664 Python recognizes 'multiqc.modules.biscuit' as an importable package[^1], 2025-12-09T17:02:10,664 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,665 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,666 package, please make sure that 'multiqc.modules.biscuit' is explicitly added 2025-12-09T17:02:10,666 to the `packages` configuration field. 2025-12-09T17:02:10,667 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,668 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,669 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,671 If you don't want 'multiqc.modules.biscuit' to be distributed and are 2025-12-09T17:02:10,671 already explicitly excluding 'multiqc.modules.biscuit' via 2025-12-09T17:02:10,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,672 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,673 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,674 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,675 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,675 even if it does not contain any `.py` files. 2025-12-09T17:02:10,676 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,676 directory, all directories are treated like packages. 2025-12-09T17:02:10,676 ******************************************************************************** 2025-12-09T17:02:10,677 !! 2025-12-09T17:02:10,678 check.warn(importable) 2025-12-09T17:02:10,678 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.biscuit.tests' is absent from the `packages` configuration. 2025-12-09T17:02:10,678 !! 2025-12-09T17:02:10,679 ******************************************************************************** 2025-12-09T17:02:10,680 ############################ 2025-12-09T17:02:10,680 # Package would be ignored # 2025-12-09T17:02:10,681 ############################ 2025-12-09T17:02:10,682 Python recognizes 'multiqc.modules.biscuit.tests' as an importable package[^1], 2025-12-09T17:02:10,682 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,683 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,684 package, please make sure that 'multiqc.modules.biscuit.tests' is explicitly added 2025-12-09T17:02:10,684 to the `packages` configuration field. 2025-12-09T17:02:10,686 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,686 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,687 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,688 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,689 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,690 If you don't want 'multiqc.modules.biscuit.tests' to be distributed and are 2025-12-09T17:02:10,690 already explicitly excluding 'multiqc.modules.biscuit.tests' via 2025-12-09T17:02:10,691 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,691 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,692 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,693 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,694 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,695 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,696 even if it does not contain any `.py` files. 2025-12-09T17:02:10,697 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,697 directory, all directories are treated like packages. 2025-12-09T17:02:10,698 ******************************************************************************** 2025-12-09T17:02:10,699 !! 2025-12-09T17:02:10,699 check.warn(importable) 2025-12-09T17:02:10,700 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bismark' is absent from the `packages` configuration. 2025-12-09T17:02:10,700 !! 2025-12-09T17:02:10,701 ******************************************************************************** 2025-12-09T17:02:10,701 ############################ 2025-12-09T17:02:10,701 # Package would be ignored # 2025-12-09T17:02:10,702 ############################ 2025-12-09T17:02:10,702 Python recognizes 'multiqc.modules.bismark' as an importable package[^1], 2025-12-09T17:02:10,702 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,703 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,703 package, please make sure that 'multiqc.modules.bismark' is explicitly added 2025-12-09T17:02:10,704 to the `packages` configuration field. 2025-12-09T17:02:10,705 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,705 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,706 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,707 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,708 If you don't want 'multiqc.modules.bismark' to be distributed and are 2025-12-09T17:02:10,708 already explicitly excluding 'multiqc.modules.bismark' via 2025-12-09T17:02:10,709 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,709 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,710 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,711 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,712 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,714 even if it does not contain any `.py` files. 2025-12-09T17:02:10,715 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,715 directory, all directories are treated like packages. 2025-12-09T17:02:10,716 ******************************************************************************** 2025-12-09T17:02:10,717 !! 2025-12-09T17:02:10,717 check.warn(importable) 2025-12-09T17:02:10,718 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bowtie1' is absent from the `packages` configuration. 2025-12-09T17:02:10,718 !! 2025-12-09T17:02:10,719 ******************************************************************************** 2025-12-09T17:02:10,720 ############################ 2025-12-09T17:02:10,720 # Package would be ignored # 2025-12-09T17:02:10,721 ############################ 2025-12-09T17:02:10,721 Python recognizes 'multiqc.modules.bowtie1' as an importable package[^1], 2025-12-09T17:02:10,722 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,723 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,723 package, please make sure that 'multiqc.modules.bowtie1' is explicitly added 2025-12-09T17:02:10,724 to the `packages` configuration field. 2025-12-09T17:02:10,725 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,726 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,726 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,727 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,727 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,728 If you don't want 'multiqc.modules.bowtie1' to be distributed and are 2025-12-09T17:02:10,729 already explicitly excluding 'multiqc.modules.bowtie1' via 2025-12-09T17:02:10,729 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,729 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,730 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,731 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,731 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,732 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,733 even if it does not contain any `.py` files. 2025-12-09T17:02:10,733 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,733 directory, all directories are treated like packages. 2025-12-09T17:02:10,734 ******************************************************************************** 2025-12-09T17:02:10,735 !! 2025-12-09T17:02:10,735 check.warn(importable) 2025-12-09T17:02:10,735 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bowtie2' is absent from the `packages` configuration. 2025-12-09T17:02:10,736 !! 2025-12-09T17:02:10,737 ******************************************************************************** 2025-12-09T17:02:10,737 ############################ 2025-12-09T17:02:10,738 # Package would be ignored # 2025-12-09T17:02:10,739 ############################ 2025-12-09T17:02:10,739 Python recognizes 'multiqc.modules.bowtie2' as an importable package[^1], 2025-12-09T17:02:10,740 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,741 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,741 package, please make sure that 'multiqc.modules.bowtie2' is explicitly added 2025-12-09T17:02:10,742 to the `packages` configuration field. 2025-12-09T17:02:10,743 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,743 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,744 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,745 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,746 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,747 If you don't want 'multiqc.modules.bowtie2' to be distributed and are 2025-12-09T17:02:10,747 already explicitly excluding 'multiqc.modules.bowtie2' via 2025-12-09T17:02:10,748 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,748 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,749 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,750 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,752 even if it does not contain any `.py` files. 2025-12-09T17:02:10,753 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,753 directory, all directories are treated like packages. 2025-12-09T17:02:10,753 ******************************************************************************** 2025-12-09T17:02:10,754 !! 2025-12-09T17:02:10,754 check.warn(importable) 2025-12-09T17:02:10,755 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.busco' is absent from the `packages` configuration. 2025-12-09T17:02:10,755 !! 2025-12-09T17:02:10,756 ******************************************************************************** 2025-12-09T17:02:10,756 ############################ 2025-12-09T17:02:10,757 # Package would be ignored # 2025-12-09T17:02:10,757 ############################ 2025-12-09T17:02:10,757 Python recognizes 'multiqc.modules.busco' as an importable package[^1], 2025-12-09T17:02:10,758 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,758 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,759 package, please make sure that 'multiqc.modules.busco' is explicitly added 2025-12-09T17:02:10,759 to the `packages` configuration field. 2025-12-09T17:02:10,760 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,761 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,761 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,762 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,763 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,764 If you don't want 'multiqc.modules.busco' to be distributed and are 2025-12-09T17:02:10,765 already explicitly excluding 'multiqc.modules.busco' via 2025-12-09T17:02:10,765 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,766 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,767 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,768 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,768 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,770 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,770 even if it does not contain any `.py` files. 2025-12-09T17:02:10,771 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,771 directory, all directories are treated like packages. 2025-12-09T17:02:10,772 ******************************************************************************** 2025-12-09T17:02:10,773 !! 2025-12-09T17:02:10,773 check.warn(importable) 2025-12-09T17:02:10,773 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.bustools' is absent from the `packages` configuration. 2025-12-09T17:02:10,774 !! 2025-12-09T17:02:10,775 ******************************************************************************** 2025-12-09T17:02:10,775 ############################ 2025-12-09T17:02:10,776 # Package would be ignored # 2025-12-09T17:02:10,777 ############################ 2025-12-09T17:02:10,777 Python recognizes 'multiqc.modules.bustools' as an importable package[^1], 2025-12-09T17:02:10,778 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,779 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,779 package, please make sure that 'multiqc.modules.bustools' is explicitly added 2025-12-09T17:02:10,779 to the `packages` configuration field. 2025-12-09T17:02:10,780 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,781 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,783 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,783 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,784 If you don't want 'multiqc.modules.bustools' to be distributed and are 2025-12-09T17:02:10,784 already explicitly excluding 'multiqc.modules.bustools' via 2025-12-09T17:02:10,785 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,785 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,786 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,786 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,787 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,788 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,789 even if it does not contain any `.py` files. 2025-12-09T17:02:10,789 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,790 directory, all directories are treated like packages. 2025-12-09T17:02:10,790 ******************************************************************************** 2025-12-09T17:02:10,791 !! 2025-12-09T17:02:10,792 check.warn(importable) 2025-12-09T17:02:10,792 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ccs' is absent from the `packages` configuration. 2025-12-09T17:02:10,792 !! 2025-12-09T17:02:10,793 ******************************************************************************** 2025-12-09T17:02:10,794 ############################ 2025-12-09T17:02:10,794 # Package would be ignored # 2025-12-09T17:02:10,795 ############################ 2025-12-09T17:02:10,795 Python recognizes 'multiqc.modules.ccs' as an importable package[^1], 2025-12-09T17:02:10,796 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,796 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,797 package, please make sure that 'multiqc.modules.ccs' is explicitly added 2025-12-09T17:02:10,797 to the `packages` configuration field. 2025-12-09T17:02:10,798 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,799 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,799 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,800 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,801 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,802 If you don't want 'multiqc.modules.ccs' to be distributed and are 2025-12-09T17:02:10,803 already explicitly excluding 'multiqc.modules.ccs' via 2025-12-09T17:02:10,803 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,804 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,804 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,805 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,806 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,807 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,807 even if it does not contain any `.py` files. 2025-12-09T17:02:10,808 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,808 directory, all directories are treated like packages. 2025-12-09T17:02:10,808 ******************************************************************************** 2025-12-09T17:02:10,809 !! 2025-12-09T17:02:10,809 check.warn(importable) 2025-12-09T17:02:10,810 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ccs.tests' is absent from the `packages` configuration. 2025-12-09T17:02:10,810 !! 2025-12-09T17:02:10,811 ******************************************************************************** 2025-12-09T17:02:10,811 ############################ 2025-12-09T17:02:10,812 # Package would be ignored # 2025-12-09T17:02:10,812 ############################ 2025-12-09T17:02:10,813 Python recognizes 'multiqc.modules.ccs.tests' as an importable package[^1], 2025-12-09T17:02:10,813 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,814 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,814 package, please make sure that 'multiqc.modules.ccs.tests' is explicitly added 2025-12-09T17:02:10,815 to the `packages` configuration field. 2025-12-09T17:02:10,816 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,816 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,817 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,818 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,819 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,819 If you don't want 'multiqc.modules.ccs.tests' to be distributed and are 2025-12-09T17:02:10,820 already explicitly excluding 'multiqc.modules.ccs.tests' via 2025-12-09T17:02:10,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,821 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,822 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,825 even if it does not contain any `.py` files. 2025-12-09T17:02:10,825 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,826 directory, all directories are treated like packages. 2025-12-09T17:02:10,826 ******************************************************************************** 2025-12-09T17:02:10,827 !! 2025-12-09T17:02:10,828 check.warn(importable) 2025-12-09T17:02:10,828 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.cellranger' is absent from the `packages` configuration. 2025-12-09T17:02:10,829 !! 2025-12-09T17:02:10,830 ******************************************************************************** 2025-12-09T17:02:10,830 ############################ 2025-12-09T17:02:10,830 # Package would be ignored # 2025-12-09T17:02:10,831 ############################ 2025-12-09T17:02:10,831 Python recognizes 'multiqc.modules.cellranger' as an importable package[^1], 2025-12-09T17:02:10,832 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,832 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,833 package, please make sure that 'multiqc.modules.cellranger' is explicitly added 2025-12-09T17:02:10,833 to the `packages` configuration field. 2025-12-09T17:02:10,834 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,834 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,835 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,836 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,837 If you don't want 'multiqc.modules.cellranger' to be distributed and are 2025-12-09T17:02:10,837 already explicitly excluding 'multiqc.modules.cellranger' via 2025-12-09T17:02:10,837 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,838 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,838 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,839 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,840 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,842 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,842 even if it does not contain any `.py` files. 2025-12-09T17:02:10,842 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,843 directory, all directories are treated like packages. 2025-12-09T17:02:10,843 ******************************************************************************** 2025-12-09T17:02:10,844 !! 2025-12-09T17:02:10,845 check.warn(importable) 2025-12-09T17:02:10,845 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.cellranger_arc' is absent from the `packages` configuration. 2025-12-09T17:02:10,846 !! 2025-12-09T17:02:10,846 ******************************************************************************** 2025-12-09T17:02:10,847 ############################ 2025-12-09T17:02:10,847 # Package would be ignored # 2025-12-09T17:02:10,848 ############################ 2025-12-09T17:02:10,848 Python recognizes 'multiqc.modules.cellranger_arc' as an importable package[^1], 2025-12-09T17:02:10,849 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,850 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,851 package, please make sure that 'multiqc.modules.cellranger_arc' is explicitly added 2025-12-09T17:02:10,851 to the `packages` configuration field. 2025-12-09T17:02:10,852 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,853 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,853 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,854 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,855 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,856 If you don't want 'multiqc.modules.cellranger_arc' to be distributed and are 2025-12-09T17:02:10,856 already explicitly excluding 'multiqc.modules.cellranger_arc' via 2025-12-09T17:02:10,856 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,857 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,858 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,859 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,860 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,860 even if it does not contain any `.py` files. 2025-12-09T17:02:10,860 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,861 directory, all directories are treated like packages. 2025-12-09T17:02:10,861 ******************************************************************************** 2025-12-09T17:02:10,862 !! 2025-12-09T17:02:10,862 check.warn(importable) 2025-12-09T17:02:10,863 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.cellranger_arc.tests' is absent from the `packages` configuration. 2025-12-09T17:02:10,863 !! 2025-12-09T17:02:10,864 ******************************************************************************** 2025-12-09T17:02:10,864 ############################ 2025-12-09T17:02:10,865 # Package would be ignored # 2025-12-09T17:02:10,865 ############################ 2025-12-09T17:02:10,866 Python recognizes 'multiqc.modules.cellranger_arc.tests' as an importable package[^1], 2025-12-09T17:02:10,866 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,867 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,868 package, please make sure that 'multiqc.modules.cellranger_arc.tests' is explicitly added 2025-12-09T17:02:10,868 to the `packages` configuration field. 2025-12-09T17:02:10,869 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,870 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,870 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,871 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,872 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,873 If you don't want 'multiqc.modules.cellranger_arc.tests' to be distributed and are 2025-12-09T17:02:10,873 already explicitly excluding 'multiqc.modules.cellranger_arc.tests' via 2025-12-09T17:02:10,874 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,874 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,875 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,876 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,877 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,878 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,879 even if it does not contain any `.py` files. 2025-12-09T17:02:10,880 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,880 directory, all directories are treated like packages. 2025-12-09T17:02:10,880 ******************************************************************************** 2025-12-09T17:02:10,881 !! 2025-12-09T17:02:10,881 check.warn(importable) 2025-12-09T17:02:10,882 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.cells2stats' is absent from the `packages` configuration. 2025-12-09T17:02:10,882 !! 2025-12-09T17:02:10,883 ******************************************************************************** 2025-12-09T17:02:10,883 ############################ 2025-12-09T17:02:10,883 # Package would be ignored # 2025-12-09T17:02:10,884 ############################ 2025-12-09T17:02:10,884 Python recognizes 'multiqc.modules.cells2stats' as an importable package[^1], 2025-12-09T17:02:10,884 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,885 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,885 package, please make sure that 'multiqc.modules.cells2stats' is explicitly added 2025-12-09T17:02:10,886 to the `packages` configuration field. 2025-12-09T17:02:10,887 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,887 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,888 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,889 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,889 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,891 If you don't want 'multiqc.modules.cells2stats' to be distributed and are 2025-12-09T17:02:10,891 already explicitly excluding 'multiqc.modules.cells2stats' via 2025-12-09T17:02:10,892 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,892 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,892 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,893 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,895 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,896 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,896 even if it does not contain any `.py` files. 2025-12-09T17:02:10,897 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,897 directory, all directories are treated like packages. 2025-12-09T17:02:10,898 ******************************************************************************** 2025-12-09T17:02:10,899 !! 2025-12-09T17:02:10,899 check.warn(importable) 2025-12-09T17:02:10,899 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.checkm' is absent from the `packages` configuration. 2025-12-09T17:02:10,900 !! 2025-12-09T17:02:10,901 ******************************************************************************** 2025-12-09T17:02:10,901 ############################ 2025-12-09T17:02:10,902 # Package would be ignored # 2025-12-09T17:02:10,902 ############################ 2025-12-09T17:02:10,903 Python recognizes 'multiqc.modules.checkm' as an importable package[^1], 2025-12-09T17:02:10,903 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,905 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,905 package, please make sure that 'multiqc.modules.checkm' is explicitly added 2025-12-09T17:02:10,905 to the `packages` configuration field. 2025-12-09T17:02:10,906 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,906 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,907 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,907 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,908 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,909 If you don't want 'multiqc.modules.checkm' to be distributed and are 2025-12-09T17:02:10,909 already explicitly excluding 'multiqc.modules.checkm' via 2025-12-09T17:02:10,909 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,910 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,910 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,911 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,913 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,913 even if it does not contain any `.py` files. 2025-12-09T17:02:10,914 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,914 directory, all directories are treated like packages. 2025-12-09T17:02:10,914 ******************************************************************************** 2025-12-09T17:02:10,916 !! 2025-12-09T17:02:10,916 check.warn(importable) 2025-12-09T17:02:10,917 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.checkm2' is absent from the `packages` configuration. 2025-12-09T17:02:10,917 !! 2025-12-09T17:02:10,919 ******************************************************************************** 2025-12-09T17:02:10,919 ############################ 2025-12-09T17:02:10,920 # Package would be ignored # 2025-12-09T17:02:10,920 ############################ 2025-12-09T17:02:10,921 Python recognizes 'multiqc.modules.checkm2' as an importable package[^1], 2025-12-09T17:02:10,921 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,923 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,923 package, please make sure that 'multiqc.modules.checkm2' is explicitly added 2025-12-09T17:02:10,924 to the `packages` configuration field. 2025-12-09T17:02:10,924 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,925 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,925 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,926 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,927 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,928 If you don't want 'multiqc.modules.checkm2' to be distributed and are 2025-12-09T17:02:10,929 already explicitly excluding 'multiqc.modules.checkm2' via 2025-12-09T17:02:10,929 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,930 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,930 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,932 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,932 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,933 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,934 even if it does not contain any `.py` files. 2025-12-09T17:02:10,934 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,934 directory, all directories are treated like packages. 2025-12-09T17:02:10,935 ******************************************************************************** 2025-12-09T17:02:10,935 !! 2025-12-09T17:02:10,936 check.warn(importable) 2025-12-09T17:02:10,936 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.checkqc' is absent from the `packages` configuration. 2025-12-09T17:02:10,936 !! 2025-12-09T17:02:10,937 ******************************************************************************** 2025-12-09T17:02:10,937 ############################ 2025-12-09T17:02:10,938 # Package would be ignored # 2025-12-09T17:02:10,938 ############################ 2025-12-09T17:02:10,938 Python recognizes 'multiqc.modules.checkqc' as an importable package[^1], 2025-12-09T17:02:10,939 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,940 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,940 package, please make sure that 'multiqc.modules.checkqc' is explicitly added 2025-12-09T17:02:10,940 to the `packages` configuration field. 2025-12-09T17:02:10,941 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,942 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,943 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,945 If you don't want 'multiqc.modules.checkqc' to be distributed and are 2025-12-09T17:02:10,945 already explicitly excluding 'multiqc.modules.checkqc' via 2025-12-09T17:02:10,946 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,946 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,947 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,948 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,949 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,950 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,950 even if it does not contain any `.py` files. 2025-12-09T17:02:10,951 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,951 directory, all directories are treated like packages. 2025-12-09T17:02:10,952 ******************************************************************************** 2025-12-09T17:02:10,953 !! 2025-12-09T17:02:10,953 check.warn(importable) 2025-12-09T17:02:10,954 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.clipandmerge' is absent from the `packages` configuration. 2025-12-09T17:02:10,954 !! 2025-12-09T17:02:10,955 ******************************************************************************** 2025-12-09T17:02:10,956 ############################ 2025-12-09T17:02:10,957 # Package would be ignored # 2025-12-09T17:02:10,957 ############################ 2025-12-09T17:02:10,958 Python recognizes 'multiqc.modules.clipandmerge' as an importable package[^1], 2025-12-09T17:02:10,958 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,959 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,959 package, please make sure that 'multiqc.modules.clipandmerge' is explicitly added 2025-12-09T17:02:10,959 to the `packages` configuration field. 2025-12-09T17:02:10,960 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,961 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,962 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,963 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,963 If you don't want 'multiqc.modules.clipandmerge' to be distributed and are 2025-12-09T17:02:10,964 already explicitly excluding 'multiqc.modules.clipandmerge' via 2025-12-09T17:02:10,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,965 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,966 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,967 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,968 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,969 even if it does not contain any `.py` files. 2025-12-09T17:02:10,969 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,970 directory, all directories are treated like packages. 2025-12-09T17:02:10,970 ******************************************************************************** 2025-12-09T17:02:10,971 !! 2025-12-09T17:02:10,972 check.warn(importable) 2025-12-09T17:02:10,972 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.clusterflow' is absent from the `packages` configuration. 2025-12-09T17:02:10,973 !! 2025-12-09T17:02:10,974 ******************************************************************************** 2025-12-09T17:02:10,974 ############################ 2025-12-09T17:02:10,975 # Package would be ignored # 2025-12-09T17:02:10,975 ############################ 2025-12-09T17:02:10,976 Python recognizes 'multiqc.modules.clusterflow' as an importable package[^1], 2025-12-09T17:02:10,976 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,977 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,978 package, please make sure that 'multiqc.modules.clusterflow' is explicitly added 2025-12-09T17:02:10,978 to the `packages` configuration field. 2025-12-09T17:02:10,979 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,980 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,981 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:10,982 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:10,983 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:10,984 If you don't want 'multiqc.modules.clusterflow' to be distributed and are 2025-12-09T17:02:10,984 already explicitly excluding 'multiqc.modules.clusterflow' via 2025-12-09T17:02:10,984 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:10,985 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:10,985 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:10,986 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:10,987 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:10,988 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:10,988 even if it does not contain any `.py` files. 2025-12-09T17:02:10,988 On the other hand, currently there is no concept of package data 2025-12-09T17:02:10,989 directory, all directories are treated like packages. 2025-12-09T17:02:10,989 ******************************************************************************** 2025-12-09T17:02:10,990 !! 2025-12-09T17:02:10,991 check.warn(importable) 2025-12-09T17:02:10,991 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.conpair' is absent from the `packages` configuration. 2025-12-09T17:02:10,992 !! 2025-12-09T17:02:10,993 ******************************************************************************** 2025-12-09T17:02:10,993 ############################ 2025-12-09T17:02:10,994 # Package would be ignored # 2025-12-09T17:02:10,994 ############################ 2025-12-09T17:02:10,994 Python recognizes 'multiqc.modules.conpair' as an importable package[^1], 2025-12-09T17:02:10,995 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:10,996 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:10,996 package, please make sure that 'multiqc.modules.conpair' is explicitly added 2025-12-09T17:02:10,997 to the `packages` configuration field. 2025-12-09T17:02:10,998 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:10,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:10,999 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,000 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,001 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,002 If you don't want 'multiqc.modules.conpair' to be distributed and are 2025-12-09T17:02:11,002 already explicitly excluding 'multiqc.modules.conpair' via 2025-12-09T17:02:11,003 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,003 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,004 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,005 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,008 even if it does not contain any `.py` files. 2025-12-09T17:02:11,008 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,009 directory, all directories are treated like packages. 2025-12-09T17:02:11,009 ******************************************************************************** 2025-12-09T17:02:11,011 !! 2025-12-09T17:02:11,011 check.warn(importable) 2025-12-09T17:02:11,011 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.cutadapt' is absent from the `packages` configuration. 2025-12-09T17:02:11,012 !! 2025-12-09T17:02:11,012 ******************************************************************************** 2025-12-09T17:02:11,013 ############################ 2025-12-09T17:02:11,013 # Package would be ignored # 2025-12-09T17:02:11,014 ############################ 2025-12-09T17:02:11,014 Python recognizes 'multiqc.modules.cutadapt' as an importable package[^1], 2025-12-09T17:02:11,014 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,015 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,015 package, please make sure that 'multiqc.modules.cutadapt' is explicitly added 2025-12-09T17:02:11,016 to the `packages` configuration field. 2025-12-09T17:02:11,017 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,017 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,018 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,019 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,020 If you don't want 'multiqc.modules.cutadapt' to be distributed and are 2025-12-09T17:02:11,020 already explicitly excluding 'multiqc.modules.cutadapt' via 2025-12-09T17:02:11,021 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,021 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,021 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,022 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,023 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,025 even if it does not contain any `.py` files. 2025-12-09T17:02:11,026 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,026 directory, all directories are treated like packages. 2025-12-09T17:02:11,027 ******************************************************************************** 2025-12-09T17:02:11,028 !! 2025-12-09T17:02:11,028 check.warn(importable) 2025-12-09T17:02:11,029 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.damageprofiler' is absent from the `packages` configuration. 2025-12-09T17:02:11,029 !! 2025-12-09T17:02:11,030 ******************************************************************************** 2025-12-09T17:02:11,030 ############################ 2025-12-09T17:02:11,031 # Package would be ignored # 2025-12-09T17:02:11,031 ############################ 2025-12-09T17:02:11,032 Python recognizes 'multiqc.modules.damageprofiler' as an importable package[^1], 2025-12-09T17:02:11,032 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,033 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,034 package, please make sure that 'multiqc.modules.damageprofiler' is explicitly added 2025-12-09T17:02:11,034 to the `packages` configuration field. 2025-12-09T17:02:11,035 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,036 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,036 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,037 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,038 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,038 If you don't want 'multiqc.modules.damageprofiler' to be distributed and are 2025-12-09T17:02:11,039 already explicitly excluding 'multiqc.modules.damageprofiler' via 2025-12-09T17:02:11,039 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,039 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,040 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,040 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,041 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,042 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,043 even if it does not contain any `.py` files. 2025-12-09T17:02:11,043 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,043 directory, all directories are treated like packages. 2025-12-09T17:02:11,044 ******************************************************************************** 2025-12-09T17:02:11,045 !! 2025-12-09T17:02:11,045 check.warn(importable) 2025-12-09T17:02:11,046 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.dedup' is absent from the `packages` configuration. 2025-12-09T17:02:11,046 !! 2025-12-09T17:02:11,047 ******************************************************************************** 2025-12-09T17:02:11,048 ############################ 2025-12-09T17:02:11,048 # Package would be ignored # 2025-12-09T17:02:11,048 ############################ 2025-12-09T17:02:11,049 Python recognizes 'multiqc.modules.dedup' as an importable package[^1], 2025-12-09T17:02:11,049 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,050 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,051 package, please make sure that 'multiqc.modules.dedup' is explicitly added 2025-12-09T17:02:11,052 to the `packages` configuration field. 2025-12-09T17:02:11,052 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,053 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,053 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,054 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,055 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,056 If you don't want 'multiqc.modules.dedup' to be distributed and are 2025-12-09T17:02:11,056 already explicitly excluding 'multiqc.modules.dedup' via 2025-12-09T17:02:11,057 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,057 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,058 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,059 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,061 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,062 even if it does not contain any `.py` files. 2025-12-09T17:02:11,062 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,062 directory, all directories are treated like packages. 2025-12-09T17:02:11,063 ******************************************************************************** 2025-12-09T17:02:11,064 !! 2025-12-09T17:02:11,064 check.warn(importable) 2025-12-09T17:02:11,064 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.deeptools' is absent from the `packages` configuration. 2025-12-09T17:02:11,065 !! 2025-12-09T17:02:11,065 ******************************************************************************** 2025-12-09T17:02:11,066 ############################ 2025-12-09T17:02:11,066 # Package would be ignored # 2025-12-09T17:02:11,066 ############################ 2025-12-09T17:02:11,067 Python recognizes 'multiqc.modules.deeptools' as an importable package[^1], 2025-12-09T17:02:11,067 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,068 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,068 package, please make sure that 'multiqc.modules.deeptools' is explicitly added 2025-12-09T17:02:11,069 to the `packages` configuration field. 2025-12-09T17:02:11,070 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,070 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,070 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,071 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,072 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,073 If you don't want 'multiqc.modules.deeptools' to be distributed and are 2025-12-09T17:02:11,073 already explicitly excluding 'multiqc.modules.deeptools' via 2025-12-09T17:02:11,074 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,075 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,075 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,076 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,077 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,078 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,078 even if it does not contain any `.py` files. 2025-12-09T17:02:11,079 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,079 directory, all directories are treated like packages. 2025-12-09T17:02:11,080 ******************************************************************************** 2025-12-09T17:02:11,081 !! 2025-12-09T17:02:11,081 check.warn(importable) 2025-12-09T17:02:11,082 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.diamond' is absent from the `packages` configuration. 2025-12-09T17:02:11,082 !! 2025-12-09T17:02:11,083 ******************************************************************************** 2025-12-09T17:02:11,084 ############################ 2025-12-09T17:02:11,084 # Package would be ignored # 2025-12-09T17:02:11,085 ############################ 2025-12-09T17:02:11,086 Python recognizes 'multiqc.modules.diamond' as an importable package[^1], 2025-12-09T17:02:11,086 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,087 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,087 package, please make sure that 'multiqc.modules.diamond' is explicitly added 2025-12-09T17:02:11,087 to the `packages` configuration field. 2025-12-09T17:02:11,088 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,088 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,089 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,089 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,090 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,091 If you don't want 'multiqc.modules.diamond' to be distributed and are 2025-12-09T17:02:11,091 already explicitly excluding 'multiqc.modules.diamond' via 2025-12-09T17:02:11,092 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,092 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,092 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,093 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,094 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,095 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,096 even if it does not contain any `.py` files. 2025-12-09T17:02:11,097 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,097 directory, all directories are treated like packages. 2025-12-09T17:02:11,098 ******************************************************************************** 2025-12-09T17:02:11,099 !! 2025-12-09T17:02:11,099 check.warn(importable) 2025-12-09T17:02:11,100 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.disambiguate' is absent from the `packages` configuration. 2025-12-09T17:02:11,101 !! 2025-12-09T17:02:11,102 ******************************************************************************** 2025-12-09T17:02:11,102 ############################ 2025-12-09T17:02:11,103 # Package would be ignored # 2025-12-09T17:02:11,104 ############################ 2025-12-09T17:02:11,104 Python recognizes 'multiqc.modules.disambiguate' as an importable package[^1], 2025-12-09T17:02:11,105 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,106 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,106 package, please make sure that 'multiqc.modules.disambiguate' is explicitly added 2025-12-09T17:02:11,107 to the `packages` configuration field. 2025-12-09T17:02:11,108 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,108 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,108 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,110 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,111 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,112 If you don't want 'multiqc.modules.disambiguate' to be distributed and are 2025-12-09T17:02:11,112 already explicitly excluding 'multiqc.modules.disambiguate' via 2025-12-09T17:02:11,113 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,113 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,114 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,114 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,116 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,117 even if it does not contain any `.py` files. 2025-12-09T17:02:11,117 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,118 directory, all directories are treated like packages. 2025-12-09T17:02:11,118 ******************************************************************************** 2025-12-09T17:02:11,119 !! 2025-12-09T17:02:11,119 check.warn(importable) 2025-12-09T17:02:11,120 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.dragen' is absent from the `packages` configuration. 2025-12-09T17:02:11,120 !! 2025-12-09T17:02:11,121 ******************************************************************************** 2025-12-09T17:02:11,121 ############################ 2025-12-09T17:02:11,122 # Package would be ignored # 2025-12-09T17:02:11,122 ############################ 2025-12-09T17:02:11,122 Python recognizes 'multiqc.modules.dragen' as an importable package[^1], 2025-12-09T17:02:11,123 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,124 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,125 package, please make sure that 'multiqc.modules.dragen' is explicitly added 2025-12-09T17:02:11,126 to the `packages` configuration field. 2025-12-09T17:02:11,127 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,128 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,130 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,132 If you don't want 'multiqc.modules.dragen' to be distributed and are 2025-12-09T17:02:11,133 already explicitly excluding 'multiqc.modules.dragen' via 2025-12-09T17:02:11,133 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,135 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,136 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,138 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,139 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,140 even if it does not contain any `.py` files. 2025-12-09T17:02:11,141 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,141 directory, all directories are treated like packages. 2025-12-09T17:02:11,142 ******************************************************************************** 2025-12-09T17:02:11,143 !! 2025-12-09T17:02:11,144 check.warn(importable) 2025-12-09T17:02:11,145 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.dragen.tests' is absent from the `packages` configuration. 2025-12-09T17:02:11,145 !! 2025-12-09T17:02:11,147 ******************************************************************************** 2025-12-09T17:02:11,147 ############################ 2025-12-09T17:02:11,148 # Package would be ignored # 2025-12-09T17:02:11,148 ############################ 2025-12-09T17:02:11,149 Python recognizes 'multiqc.modules.dragen.tests' as an importable package[^1], 2025-12-09T17:02:11,149 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,150 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,151 package, please make sure that 'multiqc.modules.dragen.tests' is explicitly added 2025-12-09T17:02:11,151 to the `packages` configuration field. 2025-12-09T17:02:11,152 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,152 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,153 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,154 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,155 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,156 If you don't want 'multiqc.modules.dragen.tests' to be distributed and are 2025-12-09T17:02:11,156 already explicitly excluding 'multiqc.modules.dragen.tests' via 2025-12-09T17:02:11,157 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,157 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,158 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,159 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,161 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,163 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,164 even if it does not contain any `.py` files. 2025-12-09T17:02:11,164 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,165 directory, all directories are treated like packages. 2025-12-09T17:02:11,166 ******************************************************************************** 2025-12-09T17:02:11,167 !! 2025-12-09T17:02:11,168 check.warn(importable) 2025-12-09T17:02:11,168 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.dragen_fastqc' is absent from the `packages` configuration. 2025-12-09T17:02:11,169 !! 2025-12-09T17:02:11,170 ******************************************************************************** 2025-12-09T17:02:11,170 ############################ 2025-12-09T17:02:11,171 # Package would be ignored # 2025-12-09T17:02:11,172 ############################ 2025-12-09T17:02:11,172 Python recognizes 'multiqc.modules.dragen_fastqc' as an importable package[^1], 2025-12-09T17:02:11,173 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,174 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,175 package, please make sure that 'multiqc.modules.dragen_fastqc' is explicitly added 2025-12-09T17:02:11,175 to the `packages` configuration field. 2025-12-09T17:02:11,177 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,177 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,178 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,180 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,180 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,181 If you don't want 'multiqc.modules.dragen_fastqc' to be distributed and are 2025-12-09T17:02:11,182 already explicitly excluding 'multiqc.modules.dragen_fastqc' via 2025-12-09T17:02:11,182 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,183 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,183 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,184 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,185 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,186 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,187 even if it does not contain any `.py` files. 2025-12-09T17:02:11,187 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,188 directory, all directories are treated like packages. 2025-12-09T17:02:11,188 ******************************************************************************** 2025-12-09T17:02:11,189 !! 2025-12-09T17:02:11,190 check.warn(importable) 2025-12-09T17:02:11,191 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.dragen_fastqc.assets.js' is absent from the `packages` configuration. 2025-12-09T17:02:11,191 !! 2025-12-09T17:02:11,193 ******************************************************************************** 2025-12-09T17:02:11,193 ############################ 2025-12-09T17:02:11,194 # Package would be ignored # 2025-12-09T17:02:11,194 ############################ 2025-12-09T17:02:11,195 Python recognizes 'multiqc.modules.dragen_fastqc.assets.js' as an importable package[^1], 2025-12-09T17:02:11,195 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,197 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,197 package, please make sure that 'multiqc.modules.dragen_fastqc.assets.js' is explicitly added 2025-12-09T17:02:11,198 to the `packages` configuration field. 2025-12-09T17:02:11,199 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,200 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,200 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,201 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,203 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,204 If you don't want 'multiqc.modules.dragen_fastqc.assets.js' to be distributed and are 2025-12-09T17:02:11,204 already explicitly excluding 'multiqc.modules.dragen_fastqc.assets.js' via 2025-12-09T17:02:11,205 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,205 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,206 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,207 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,208 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,211 even if it does not contain any `.py` files. 2025-12-09T17:02:11,212 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,213 directory, all directories are treated like packages. 2025-12-09T17:02:11,213 ******************************************************************************** 2025-12-09T17:02:11,214 !! 2025-12-09T17:02:11,214 check.warn(importable) 2025-12-09T17:02:11,215 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.eigenstratdatabasetools' is absent from the `packages` configuration. 2025-12-09T17:02:11,215 !! 2025-12-09T17:02:11,216 ******************************************************************************** 2025-12-09T17:02:11,217 ############################ 2025-12-09T17:02:11,217 # Package would be ignored # 2025-12-09T17:02:11,218 ############################ 2025-12-09T17:02:11,218 Python recognizes 'multiqc.modules.eigenstratdatabasetools' as an importable package[^1], 2025-12-09T17:02:11,219 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,220 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,220 package, please make sure that 'multiqc.modules.eigenstratdatabasetools' is explicitly added 2025-12-09T17:02:11,221 to the `packages` configuration field. 2025-12-09T17:02:11,222 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,223 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,224 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,225 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,227 If you don't want 'multiqc.modules.eigenstratdatabasetools' to be distributed and are 2025-12-09T17:02:11,227 already explicitly excluding 'multiqc.modules.eigenstratdatabasetools' via 2025-12-09T17:02:11,228 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,228 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,229 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,230 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,231 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,233 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,233 even if it does not contain any `.py` files. 2025-12-09T17:02:11,234 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,234 directory, all directories are treated like packages. 2025-12-09T17:02:11,235 ******************************************************************************** 2025-12-09T17:02:11,235 !! 2025-12-09T17:02:11,236 check.warn(importable) 2025-12-09T17:02:11,236 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.fastp' is absent from the `packages` configuration. 2025-12-09T17:02:11,237 !! 2025-12-09T17:02:11,238 ******************************************************************************** 2025-12-09T17:02:11,238 ############################ 2025-12-09T17:02:11,239 # Package would be ignored # 2025-12-09T17:02:11,239 ############################ 2025-12-09T17:02:11,240 Python recognizes 'multiqc.modules.fastp' as an importable package[^1], 2025-12-09T17:02:11,240 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,242 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,242 package, please make sure that 'multiqc.modules.fastp' is explicitly added 2025-12-09T17:02:11,242 to the `packages` configuration field. 2025-12-09T17:02:11,243 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,243 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,244 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,244 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,245 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,246 If you don't want 'multiqc.modules.fastp' to be distributed and are 2025-12-09T17:02:11,246 already explicitly excluding 'multiqc.modules.fastp' via 2025-12-09T17:02:11,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,247 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,247 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,248 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,250 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,250 even if it does not contain any `.py` files. 2025-12-09T17:02:11,251 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,251 directory, all directories are treated like packages. 2025-12-09T17:02:11,252 ******************************************************************************** 2025-12-09T17:02:11,253 !! 2025-12-09T17:02:11,253 check.warn(importable) 2025-12-09T17:02:11,254 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.fastq_screen' is absent from the `packages` configuration. 2025-12-09T17:02:11,254 !! 2025-12-09T17:02:11,255 ******************************************************************************** 2025-12-09T17:02:11,255 ############################ 2025-12-09T17:02:11,256 # Package would be ignored # 2025-12-09T17:02:11,256 ############################ 2025-12-09T17:02:11,257 Python recognizes 'multiqc.modules.fastq_screen' as an importable package[^1], 2025-12-09T17:02:11,257 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,258 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,259 package, please make sure that 'multiqc.modules.fastq_screen' is explicitly added 2025-12-09T17:02:11,259 to the `packages` configuration field. 2025-12-09T17:02:11,260 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,261 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,262 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,263 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,264 If you don't want 'multiqc.modules.fastq_screen' to be distributed and are 2025-12-09T17:02:11,264 already explicitly excluding 'multiqc.modules.fastq_screen' via 2025-12-09T17:02:11,265 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,266 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,266 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,267 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,267 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,268 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,269 even if it does not contain any `.py` files. 2025-12-09T17:02:11,269 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,269 directory, all directories are treated like packages. 2025-12-09T17:02:11,270 ******************************************************************************** 2025-12-09T17:02:11,270 !! 2025-12-09T17:02:11,271 check.warn(importable) 2025-12-09T17:02:11,271 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.fastqc' is absent from the `packages` configuration. 2025-12-09T17:02:11,272 !! 2025-12-09T17:02:11,272 ******************************************************************************** 2025-12-09T17:02:11,273 ############################ 2025-12-09T17:02:11,273 # Package would be ignored # 2025-12-09T17:02:11,273 ############################ 2025-12-09T17:02:11,274 Python recognizes 'multiqc.modules.fastqc' as an importable package[^1], 2025-12-09T17:02:11,274 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,275 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,276 package, please make sure that 'multiqc.modules.fastqc' is explicitly added 2025-12-09T17:02:11,276 to the `packages` configuration field. 2025-12-09T17:02:11,277 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,278 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,279 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,280 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,281 If you don't want 'multiqc.modules.fastqc' to be distributed and are 2025-12-09T17:02:11,281 already explicitly excluding 'multiqc.modules.fastqc' via 2025-12-09T17:02:11,282 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,282 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,283 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,284 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,285 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,286 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,287 even if it does not contain any `.py` files. 2025-12-09T17:02:11,287 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,288 directory, all directories are treated like packages. 2025-12-09T17:02:11,288 ******************************************************************************** 2025-12-09T17:02:11,289 !! 2025-12-09T17:02:11,290 check.warn(importable) 2025-12-09T17:02:11,290 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.fastqc.assets.css' is absent from the `packages` configuration. 2025-12-09T17:02:11,291 !! 2025-12-09T17:02:11,292 ******************************************************************************** 2025-12-09T17:02:11,292 ############################ 2025-12-09T17:02:11,292 # Package would be ignored # 2025-12-09T17:02:11,293 ############################ 2025-12-09T17:02:11,293 Python recognizes 'multiqc.modules.fastqc.assets.css' as an importable package[^1], 2025-12-09T17:02:11,293 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,294 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,294 package, please make sure that 'multiqc.modules.fastqc.assets.css' is explicitly added 2025-12-09T17:02:11,295 to the `packages` configuration field. 2025-12-09T17:02:11,296 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,297 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,297 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,298 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,299 If you don't want 'multiqc.modules.fastqc.assets.css' to be distributed and are 2025-12-09T17:02:11,299 already explicitly excluding 'multiqc.modules.fastqc.assets.css' via 2025-12-09T17:02:11,300 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,300 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,301 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,302 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,304 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,304 even if it does not contain any `.py` files. 2025-12-09T17:02:11,305 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,305 directory, all directories are treated like packages. 2025-12-09T17:02:11,306 ******************************************************************************** 2025-12-09T17:02:11,307 !! 2025-12-09T17:02:11,307 check.warn(importable) 2025-12-09T17:02:11,308 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.fastqc.assets.js' is absent from the `packages` configuration. 2025-12-09T17:02:11,308 !! 2025-12-09T17:02:11,309 ******************************************************************************** 2025-12-09T17:02:11,310 ############################ 2025-12-09T17:02:11,310 # Package would be ignored # 2025-12-09T17:02:11,311 ############################ 2025-12-09T17:02:11,311 Python recognizes 'multiqc.modules.fastqc.assets.js' as an importable package[^1], 2025-12-09T17:02:11,312 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,312 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,313 package, please make sure that 'multiqc.modules.fastqc.assets.js' is explicitly added 2025-12-09T17:02:11,313 to the `packages` configuration field. 2025-12-09T17:02:11,315 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,315 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,316 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,317 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,317 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,318 If you don't want 'multiqc.modules.fastqc.assets.js' to be distributed and are 2025-12-09T17:02:11,319 already explicitly excluding 'multiqc.modules.fastqc.assets.js' via 2025-12-09T17:02:11,319 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,319 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,320 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,320 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,321 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,322 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,323 even if it does not contain any `.py` files. 2025-12-09T17:02:11,323 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,323 directory, all directories are treated like packages. 2025-12-09T17:02:11,324 ******************************************************************************** 2025-12-09T17:02:11,325 !! 2025-12-09T17:02:11,325 check.warn(importable) 2025-12-09T17:02:11,325 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.fastqc.fastqc_theoretical_gc' is absent from the `packages` configuration. 2025-12-09T17:02:11,326 !! 2025-12-09T17:02:11,327 ******************************************************************************** 2025-12-09T17:02:11,327 ############################ 2025-12-09T17:02:11,328 # Package would be ignored # 2025-12-09T17:02:11,328 ############################ 2025-12-09T17:02:11,329 Python recognizes 'multiqc.modules.fastqc.fastqc_theoretical_gc' as an importable package[^1], 2025-12-09T17:02:11,329 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,330 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,331 package, please make sure that 'multiqc.modules.fastqc.fastqc_theoretical_gc' is explicitly added 2025-12-09T17:02:11,331 to the `packages` configuration field. 2025-12-09T17:02:11,332 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,332 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,333 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,334 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,335 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,335 If you don't want 'multiqc.modules.fastqc.fastqc_theoretical_gc' to be distributed and are 2025-12-09T17:02:11,336 already explicitly excluding 'multiqc.modules.fastqc.fastqc_theoretical_gc' via 2025-12-09T17:02:11,336 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,337 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,337 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,338 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,339 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,340 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,341 even if it does not contain any `.py` files. 2025-12-09T17:02:11,341 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,342 directory, all directories are treated like packages. 2025-12-09T17:02:11,342 ******************************************************************************** 2025-12-09T17:02:11,343 !! 2025-12-09T17:02:11,343 check.warn(importable) 2025-12-09T17:02:11,344 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.featurecounts' is absent from the `packages` configuration. 2025-12-09T17:02:11,344 !! 2025-12-09T17:02:11,345 ******************************************************************************** 2025-12-09T17:02:11,345 ############################ 2025-12-09T17:02:11,345 # Package would be ignored # 2025-12-09T17:02:11,346 ############################ 2025-12-09T17:02:11,346 Python recognizes 'multiqc.modules.featurecounts' as an importable package[^1], 2025-12-09T17:02:11,346 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,347 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,347 package, please make sure that 'multiqc.modules.featurecounts' is explicitly added 2025-12-09T17:02:11,348 to the `packages` configuration field. 2025-12-09T17:02:11,348 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,349 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,349 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,350 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,351 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,352 If you don't want 'multiqc.modules.featurecounts' to be distributed and are 2025-12-09T17:02:11,352 already explicitly excluding 'multiqc.modules.featurecounts' via 2025-12-09T17:02:11,353 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,353 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,354 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,355 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,356 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,357 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,357 even if it does not contain any `.py` files. 2025-12-09T17:02:11,358 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,358 directory, all directories are treated like packages. 2025-12-09T17:02:11,359 ******************************************************************************** 2025-12-09T17:02:11,360 !! 2025-12-09T17:02:11,360 check.warn(importable) 2025-12-09T17:02:11,360 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.fgbio' is absent from the `packages` configuration. 2025-12-09T17:02:11,361 !! 2025-12-09T17:02:11,362 ******************************************************************************** 2025-12-09T17:02:11,362 ############################ 2025-12-09T17:02:11,363 # Package would be ignored # 2025-12-09T17:02:11,363 ############################ 2025-12-09T17:02:11,364 Python recognizes 'multiqc.modules.fgbio' as an importable package[^1], 2025-12-09T17:02:11,365 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,366 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,366 package, please make sure that 'multiqc.modules.fgbio' is explicitly added 2025-12-09T17:02:11,366 to the `packages` configuration field. 2025-12-09T17:02:11,367 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,368 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,369 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,369 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,370 If you don't want 'multiqc.modules.fgbio' to be distributed and are 2025-12-09T17:02:11,370 already explicitly excluding 'multiqc.modules.fgbio' via 2025-12-09T17:02:11,371 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,371 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,371 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,372 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,373 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,374 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,375 even if it does not contain any `.py` files. 2025-12-09T17:02:11,375 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,376 directory, all directories are treated like packages. 2025-12-09T17:02:11,376 ******************************************************************************** 2025-12-09T17:02:11,377 !! 2025-12-09T17:02:11,377 check.warn(importable) 2025-12-09T17:02:11,378 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.filtlong' is absent from the `packages` configuration. 2025-12-09T17:02:11,378 !! 2025-12-09T17:02:11,379 ******************************************************************************** 2025-12-09T17:02:11,380 ############################ 2025-12-09T17:02:11,380 # Package would be ignored # 2025-12-09T17:02:11,381 ############################ 2025-12-09T17:02:11,381 Python recognizes 'multiqc.modules.filtlong' as an importable package[^1], 2025-12-09T17:02:11,381 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,382 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,383 package, please make sure that 'multiqc.modules.filtlong' is explicitly added 2025-12-09T17:02:11,383 to the `packages` configuration field. 2025-12-09T17:02:11,384 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,385 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,386 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,387 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,388 If you don't want 'multiqc.modules.filtlong' to be distributed and are 2025-12-09T17:02:11,389 already explicitly excluding 'multiqc.modules.filtlong' via 2025-12-09T17:02:11,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,390 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,390 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,391 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,392 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,393 even if it does not contain any `.py` files. 2025-12-09T17:02:11,394 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,394 directory, all directories are treated like packages. 2025-12-09T17:02:11,394 ******************************************************************************** 2025-12-09T17:02:11,395 !! 2025-12-09T17:02:11,395 check.warn(importable) 2025-12-09T17:02:11,396 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.flash' is absent from the `packages` configuration. 2025-12-09T17:02:11,396 !! 2025-12-09T17:02:11,397 ******************************************************************************** 2025-12-09T17:02:11,398 ############################ 2025-12-09T17:02:11,398 # Package would be ignored # 2025-12-09T17:02:11,398 ############################ 2025-12-09T17:02:11,399 Python recognizes 'multiqc.modules.flash' as an importable package[^1], 2025-12-09T17:02:11,399 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,400 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,401 package, please make sure that 'multiqc.modules.flash' is explicitly added 2025-12-09T17:02:11,401 to the `packages` configuration field. 2025-12-09T17:02:11,402 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,403 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,404 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,406 If you don't want 'multiqc.modules.flash' to be distributed and are 2025-12-09T17:02:11,406 already explicitly excluding 'multiqc.modules.flash' via 2025-12-09T17:02:11,407 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,408 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,409 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,410 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,412 even if it does not contain any `.py` files. 2025-12-09T17:02:11,412 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,412 directory, all directories are treated like packages. 2025-12-09T17:02:11,413 ******************************************************************************** 2025-12-09T17:02:11,414 !! 2025-12-09T17:02:11,414 check.warn(importable) 2025-12-09T17:02:11,415 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.flexbar' is absent from the `packages` configuration. 2025-12-09T17:02:11,416 !! 2025-12-09T17:02:11,417 ******************************************************************************** 2025-12-09T17:02:11,417 ############################ 2025-12-09T17:02:11,417 # Package would be ignored # 2025-12-09T17:02:11,418 ############################ 2025-12-09T17:02:11,418 Python recognizes 'multiqc.modules.flexbar' as an importable package[^1], 2025-12-09T17:02:11,418 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,419 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,419 package, please make sure that 'multiqc.modules.flexbar' is explicitly added 2025-12-09T17:02:11,420 to the `packages` configuration field. 2025-12-09T17:02:11,420 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,421 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,421 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,422 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,423 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,423 If you don't want 'multiqc.modules.flexbar' to be distributed and are 2025-12-09T17:02:11,424 already explicitly excluding 'multiqc.modules.flexbar' via 2025-12-09T17:02:11,424 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,425 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,425 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,426 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,427 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,428 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,428 even if it does not contain any `.py` files. 2025-12-09T17:02:11,429 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,429 directory, all directories are treated like packages. 2025-12-09T17:02:11,430 ******************************************************************************** 2025-12-09T17:02:11,431 !! 2025-12-09T17:02:11,431 check.warn(importable) 2025-12-09T17:02:11,432 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.freyja' is absent from the `packages` configuration. 2025-12-09T17:02:11,433 !! 2025-12-09T17:02:11,434 ******************************************************************************** 2025-12-09T17:02:11,434 ############################ 2025-12-09T17:02:11,435 # Package would be ignored # 2025-12-09T17:02:11,435 ############################ 2025-12-09T17:02:11,436 Python recognizes 'multiqc.modules.freyja' as an importable package[^1], 2025-12-09T17:02:11,436 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,437 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,438 package, please make sure that 'multiqc.modules.freyja' is explicitly added 2025-12-09T17:02:11,438 to the `packages` configuration field. 2025-12-09T17:02:11,439 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,440 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,441 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,443 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,444 If you don't want 'multiqc.modules.freyja' to be distributed and are 2025-12-09T17:02:11,444 already explicitly excluding 'multiqc.modules.freyja' via 2025-12-09T17:02:11,444 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,445 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,446 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,448 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,448 even if it does not contain any `.py` files. 2025-12-09T17:02:11,448 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,449 directory, all directories are treated like packages. 2025-12-09T17:02:11,449 ******************************************************************************** 2025-12-09T17:02:11,450 !! 2025-12-09T17:02:11,450 check.warn(importable) 2025-12-09T17:02:11,451 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ganon' is absent from the `packages` configuration. 2025-12-09T17:02:11,451 !! 2025-12-09T17:02:11,452 ******************************************************************************** 2025-12-09T17:02:11,452 ############################ 2025-12-09T17:02:11,453 # Package would be ignored # 2025-12-09T17:02:11,453 ############################ 2025-12-09T17:02:11,453 Python recognizes 'multiqc.modules.ganon' as an importable package[^1], 2025-12-09T17:02:11,454 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,455 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,455 package, please make sure that 'multiqc.modules.ganon' is explicitly added 2025-12-09T17:02:11,456 to the `packages` configuration field. 2025-12-09T17:02:11,456 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,458 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,459 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,460 If you don't want 'multiqc.modules.ganon' to be distributed and are 2025-12-09T17:02:11,461 already explicitly excluding 'multiqc.modules.ganon' via 2025-12-09T17:02:11,461 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,462 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,463 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,464 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,466 even if it does not contain any `.py` files. 2025-12-09T17:02:11,466 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,467 directory, all directories are treated like packages. 2025-12-09T17:02:11,467 ******************************************************************************** 2025-12-09T17:02:11,468 !! 2025-12-09T17:02:11,469 check.warn(importable) 2025-12-09T17:02:11,469 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.gatk' is absent from the `packages` configuration. 2025-12-09T17:02:11,469 !! 2025-12-09T17:02:11,470 ******************************************************************************** 2025-12-09T17:02:11,470 ############################ 2025-12-09T17:02:11,471 # Package would be ignored # 2025-12-09T17:02:11,471 ############################ 2025-12-09T17:02:11,471 Python recognizes 'multiqc.modules.gatk' as an importable package[^1], 2025-12-09T17:02:11,472 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,473 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,473 package, please make sure that 'multiqc.modules.gatk' is explicitly added 2025-12-09T17:02:11,473 to the `packages` configuration field. 2025-12-09T17:02:11,474 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,474 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,475 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,476 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,476 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,478 If you don't want 'multiqc.modules.gatk' to be distributed and are 2025-12-09T17:02:11,478 already explicitly excluding 'multiqc.modules.gatk' via 2025-12-09T17:02:11,478 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,479 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,479 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,480 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,481 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,483 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,483 even if it does not contain any `.py` files. 2025-12-09T17:02:11,484 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,484 directory, all directories are treated like packages. 2025-12-09T17:02:11,485 ******************************************************************************** 2025-12-09T17:02:11,486 !! 2025-12-09T17:02:11,486 check.warn(importable) 2025-12-09T17:02:11,487 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.gffcompare' is absent from the `packages` configuration. 2025-12-09T17:02:11,487 !! 2025-12-09T17:02:11,488 ******************************************************************************** 2025-12-09T17:02:11,489 ############################ 2025-12-09T17:02:11,489 # Package would be ignored # 2025-12-09T17:02:11,490 ############################ 2025-12-09T17:02:11,490 Python recognizes 'multiqc.modules.gffcompare' as an importable package[^1], 2025-12-09T17:02:11,491 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,491 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,492 package, please make sure that 'multiqc.modules.gffcompare' is explicitly added 2025-12-09T17:02:11,492 to the `packages` configuration field. 2025-12-09T17:02:11,493 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,494 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,495 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,496 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,496 If you don't want 'multiqc.modules.gffcompare' to be distributed and are 2025-12-09T17:02:11,497 already explicitly excluding 'multiqc.modules.gffcompare' via 2025-12-09T17:02:11,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,498 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,498 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,499 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,499 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,501 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,501 even if it does not contain any `.py` files. 2025-12-09T17:02:11,502 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,502 directory, all directories are treated like packages. 2025-12-09T17:02:11,503 ******************************************************************************** 2025-12-09T17:02:11,504 !! 2025-12-09T17:02:11,504 check.warn(importable) 2025-12-09T17:02:11,505 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.glimpse' is absent from the `packages` configuration. 2025-12-09T17:02:11,505 !! 2025-12-09T17:02:11,506 ******************************************************************************** 2025-12-09T17:02:11,507 ############################ 2025-12-09T17:02:11,507 # Package would be ignored # 2025-12-09T17:02:11,508 ############################ 2025-12-09T17:02:11,508 Python recognizes 'multiqc.modules.glimpse' as an importable package[^1], 2025-12-09T17:02:11,509 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,510 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,510 package, please make sure that 'multiqc.modules.glimpse' is explicitly added 2025-12-09T17:02:11,511 to the `packages` configuration field. 2025-12-09T17:02:11,512 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,512 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,513 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,514 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,516 If you don't want 'multiqc.modules.glimpse' to be distributed and are 2025-12-09T17:02:11,516 already explicitly excluding 'multiqc.modules.glimpse' via 2025-12-09T17:02:11,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,518 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,519 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,522 even if it does not contain any `.py` files. 2025-12-09T17:02:11,522 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,522 directory, all directories are treated like packages. 2025-12-09T17:02:11,523 ******************************************************************************** 2025-12-09T17:02:11,523 !! 2025-12-09T17:02:11,524 check.warn(importable) 2025-12-09T17:02:11,524 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.goleft_indexcov' is absent from the `packages` configuration. 2025-12-09T17:02:11,525 !! 2025-12-09T17:02:11,525 ******************************************************************************** 2025-12-09T17:02:11,526 ############################ 2025-12-09T17:02:11,526 # Package would be ignored # 2025-12-09T17:02:11,526 ############################ 2025-12-09T17:02:11,527 Python recognizes 'multiqc.modules.goleft_indexcov' as an importable package[^1], 2025-12-09T17:02:11,527 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,528 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,528 package, please make sure that 'multiqc.modules.goleft_indexcov' is explicitly added 2025-12-09T17:02:11,529 to the `packages` configuration field. 2025-12-09T17:02:11,529 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,530 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,530 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,531 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,532 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,533 If you don't want 'multiqc.modules.goleft_indexcov' to be distributed and are 2025-12-09T17:02:11,534 already explicitly excluding 'multiqc.modules.goleft_indexcov' via 2025-12-09T17:02:11,534 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,535 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,535 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,536 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,537 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,539 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,539 even if it does not contain any `.py` files. 2025-12-09T17:02:11,540 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,540 directory, all directories are treated like packages. 2025-12-09T17:02:11,541 ******************************************************************************** 2025-12-09T17:02:11,542 !! 2025-12-09T17:02:11,542 check.warn(importable) 2025-12-09T17:02:11,543 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.gopeaks' is absent from the `packages` configuration. 2025-12-09T17:02:11,543 !! 2025-12-09T17:02:11,544 ******************************************************************************** 2025-12-09T17:02:11,545 ############################ 2025-12-09T17:02:11,545 # Package would be ignored # 2025-12-09T17:02:11,546 ############################ 2025-12-09T17:02:11,547 Python recognizes 'multiqc.modules.gopeaks' as an importable package[^1], 2025-12-09T17:02:11,547 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,548 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,548 package, please make sure that 'multiqc.modules.gopeaks' is explicitly added 2025-12-09T17:02:11,549 to the `packages` configuration field. 2025-12-09T17:02:11,549 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,550 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,550 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,551 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,551 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,552 If you don't want 'multiqc.modules.gopeaks' to be distributed and are 2025-12-09T17:02:11,552 already explicitly excluding 'multiqc.modules.gopeaks' via 2025-12-09T17:02:11,553 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,553 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,554 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,554 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,555 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,556 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,557 even if it does not contain any `.py` files. 2025-12-09T17:02:11,557 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,558 directory, all directories are treated like packages. 2025-12-09T17:02:11,558 ******************************************************************************** 2025-12-09T17:02:11,559 !! 2025-12-09T17:02:11,560 check.warn(importable) 2025-12-09T17:02:11,560 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.gtdbtk' is absent from the `packages` configuration. 2025-12-09T17:02:11,561 !! 2025-12-09T17:02:11,561 ******************************************************************************** 2025-12-09T17:02:11,562 ############################ 2025-12-09T17:02:11,562 # Package would be ignored # 2025-12-09T17:02:11,563 ############################ 2025-12-09T17:02:11,563 Python recognizes 'multiqc.modules.gtdbtk' as an importable package[^1], 2025-12-09T17:02:11,564 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,565 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,565 package, please make sure that 'multiqc.modules.gtdbtk' is explicitly added 2025-12-09T17:02:11,565 to the `packages` configuration field. 2025-12-09T17:02:11,566 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,567 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,567 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,568 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,569 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,570 If you don't want 'multiqc.modules.gtdbtk' to be distributed and are 2025-12-09T17:02:11,571 already explicitly excluding 'multiqc.modules.gtdbtk' via 2025-12-09T17:02:11,571 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,572 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,572 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,573 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,574 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,575 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,575 even if it does not contain any `.py` files. 2025-12-09T17:02:11,576 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,576 directory, all directories are treated like packages. 2025-12-09T17:02:11,577 ******************************************************************************** 2025-12-09T17:02:11,578 !! 2025-12-09T17:02:11,578 check.warn(importable) 2025-12-09T17:02:11,579 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.haplocheck' is absent from the `packages` configuration. 2025-12-09T17:02:11,579 !! 2025-12-09T17:02:11,580 ******************************************************************************** 2025-12-09T17:02:11,580 ############################ 2025-12-09T17:02:11,581 # Package would be ignored # 2025-12-09T17:02:11,581 ############################ 2025-12-09T17:02:11,582 Python recognizes 'multiqc.modules.haplocheck' as an importable package[^1], 2025-12-09T17:02:11,582 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,583 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,583 package, please make sure that 'multiqc.modules.haplocheck' is explicitly added 2025-12-09T17:02:11,584 to the `packages` configuration field. 2025-12-09T17:02:11,585 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,585 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,586 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,587 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,589 If you don't want 'multiqc.modules.haplocheck' to be distributed and are 2025-12-09T17:02:11,589 already explicitly excluding 'multiqc.modules.haplocheck' via 2025-12-09T17:02:11,590 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,590 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,590 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,591 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,592 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,594 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,594 even if it does not contain any `.py` files. 2025-12-09T17:02:11,595 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,595 directory, all directories are treated like packages. 2025-12-09T17:02:11,595 ******************************************************************************** 2025-12-09T17:02:11,596 !! 2025-12-09T17:02:11,597 check.warn(importable) 2025-12-09T17:02:11,597 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.happy' is absent from the `packages` configuration. 2025-12-09T17:02:11,598 !! 2025-12-09T17:02:11,599 ******************************************************************************** 2025-12-09T17:02:11,599 ############################ 2025-12-09T17:02:11,599 # Package would be ignored # 2025-12-09T17:02:11,600 ############################ 2025-12-09T17:02:11,600 Python recognizes 'multiqc.modules.happy' as an importable package[^1], 2025-12-09T17:02:11,600 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,601 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,601 package, please make sure that 'multiqc.modules.happy' is explicitly added 2025-12-09T17:02:11,602 to the `packages` configuration field. 2025-12-09T17:02:11,602 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,603 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,604 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,605 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,606 If you don't want 'multiqc.modules.happy' to be distributed and are 2025-12-09T17:02:11,606 already explicitly excluding 'multiqc.modules.happy' via 2025-12-09T17:02:11,606 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,607 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,607 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,608 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,610 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,611 even if it does not contain any `.py` files. 2025-12-09T17:02:11,611 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,612 directory, all directories are treated like packages. 2025-12-09T17:02:11,612 ******************************************************************************** 2025-12-09T17:02:11,613 !! 2025-12-09T17:02:11,613 check.warn(importable) 2025-12-09T17:02:11,614 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.hicexplorer' is absent from the `packages` configuration. 2025-12-09T17:02:11,614 !! 2025-12-09T17:02:11,615 ******************************************************************************** 2025-12-09T17:02:11,616 ############################ 2025-12-09T17:02:11,616 # Package would be ignored # 2025-12-09T17:02:11,616 ############################ 2025-12-09T17:02:11,617 Python recognizes 'multiqc.modules.hicexplorer' as an importable package[^1], 2025-12-09T17:02:11,617 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,618 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,619 package, please make sure that 'multiqc.modules.hicexplorer' is explicitly added 2025-12-09T17:02:11,619 to the `packages` configuration field. 2025-12-09T17:02:11,620 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,621 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,621 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,622 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,623 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,624 If you don't want 'multiqc.modules.hicexplorer' to be distributed and are 2025-12-09T17:02:11,624 already explicitly excluding 'multiqc.modules.hicexplorer' via 2025-12-09T17:02:11,624 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,625 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,625 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,626 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,627 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,628 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,628 even if it does not contain any `.py` files. 2025-12-09T17:02:11,629 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,629 directory, all directories are treated like packages. 2025-12-09T17:02:11,629 ******************************************************************************** 2025-12-09T17:02:11,630 !! 2025-12-09T17:02:11,631 check.warn(importable) 2025-12-09T17:02:11,631 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.hicpro' is absent from the `packages` configuration. 2025-12-09T17:02:11,632 !! 2025-12-09T17:02:11,632 ******************************************************************************** 2025-12-09T17:02:11,633 ############################ 2025-12-09T17:02:11,633 # Package would be ignored # 2025-12-09T17:02:11,634 ############################ 2025-12-09T17:02:11,634 Python recognizes 'multiqc.modules.hicpro' as an importable package[^1], 2025-12-09T17:02:11,635 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,636 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,636 package, please make sure that 'multiqc.modules.hicpro' is explicitly added 2025-12-09T17:02:11,637 to the `packages` configuration field. 2025-12-09T17:02:11,638 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,638 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,639 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,640 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,640 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,641 If you don't want 'multiqc.modules.hicpro' to be distributed and are 2025-12-09T17:02:11,642 already explicitly excluding 'multiqc.modules.hicpro' via 2025-12-09T17:02:11,642 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,643 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,643 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,644 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,645 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,647 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,647 even if it does not contain any `.py` files. 2025-12-09T17:02:11,648 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,649 directory, all directories are treated like packages. 2025-12-09T17:02:11,649 ******************************************************************************** 2025-12-09T17:02:11,650 !! 2025-12-09T17:02:11,650 check.warn(importable) 2025-12-09T17:02:11,651 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.hicup' is absent from the `packages` configuration. 2025-12-09T17:02:11,651 !! 2025-12-09T17:02:11,652 ******************************************************************************** 2025-12-09T17:02:11,652 ############################ 2025-12-09T17:02:11,652 # Package would be ignored # 2025-12-09T17:02:11,653 ############################ 2025-12-09T17:02:11,653 Python recognizes 'multiqc.modules.hicup' as an importable package[^1], 2025-12-09T17:02:11,654 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,654 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,655 package, please make sure that 'multiqc.modules.hicup' is explicitly added 2025-12-09T17:02:11,655 to the `packages` configuration field. 2025-12-09T17:02:11,656 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,657 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,658 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,659 If you don't want 'multiqc.modules.hicup' to be distributed and are 2025-12-09T17:02:11,660 already explicitly excluding 'multiqc.modules.hicup' via 2025-12-09T17:02:11,660 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,661 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,661 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,662 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,663 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,664 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,665 even if it does not contain any `.py` files. 2025-12-09T17:02:11,666 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,666 directory, all directories are treated like packages. 2025-12-09T17:02:11,666 ******************************************************************************** 2025-12-09T17:02:11,667 !! 2025-12-09T17:02:11,668 check.warn(importable) 2025-12-09T17:02:11,668 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.hifiasm' is absent from the `packages` configuration. 2025-12-09T17:02:11,669 !! 2025-12-09T17:02:11,670 ******************************************************************************** 2025-12-09T17:02:11,670 ############################ 2025-12-09T17:02:11,671 # Package would be ignored # 2025-12-09T17:02:11,671 ############################ 2025-12-09T17:02:11,672 Python recognizes 'multiqc.modules.hifiasm' as an importable package[^1], 2025-12-09T17:02:11,672 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,673 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,674 package, please make sure that 'multiqc.modules.hifiasm' is explicitly added 2025-12-09T17:02:11,674 to the `packages` configuration field. 2025-12-09T17:02:11,675 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,676 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,676 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,677 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,678 If you don't want 'multiqc.modules.hifiasm' to be distributed and are 2025-12-09T17:02:11,678 already explicitly excluding 'multiqc.modules.hifiasm' via 2025-12-09T17:02:11,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,679 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,680 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,681 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,682 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,682 even if it does not contain any `.py` files. 2025-12-09T17:02:11,683 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,683 directory, all directories are treated like packages. 2025-12-09T17:02:11,683 ******************************************************************************** 2025-12-09T17:02:11,684 !! 2025-12-09T17:02:11,685 check.warn(importable) 2025-12-09T17:02:11,685 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.hisat2' is absent from the `packages` configuration. 2025-12-09T17:02:11,685 !! 2025-12-09T17:02:11,686 ******************************************************************************** 2025-12-09T17:02:11,687 ############################ 2025-12-09T17:02:11,687 # Package would be ignored # 2025-12-09T17:02:11,687 ############################ 2025-12-09T17:02:11,688 Python recognizes 'multiqc.modules.hisat2' as an importable package[^1], 2025-12-09T17:02:11,688 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,689 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,690 package, please make sure that 'multiqc.modules.hisat2' is explicitly added 2025-12-09T17:02:11,690 to the `packages` configuration field. 2025-12-09T17:02:11,691 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,691 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,692 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,693 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,693 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,694 If you don't want 'multiqc.modules.hisat2' to be distributed and are 2025-12-09T17:02:11,695 already explicitly excluding 'multiqc.modules.hisat2' via 2025-12-09T17:02:11,695 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,696 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,696 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,697 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,698 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,699 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,699 even if it does not contain any `.py` files. 2025-12-09T17:02:11,699 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,700 directory, all directories are treated like packages. 2025-12-09T17:02:11,700 ******************************************************************************** 2025-12-09T17:02:11,701 !! 2025-12-09T17:02:11,701 check.warn(importable) 2025-12-09T17:02:11,702 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.homer' is absent from the `packages` configuration. 2025-12-09T17:02:11,702 !! 2025-12-09T17:02:11,703 ******************************************************************************** 2025-12-09T17:02:11,703 ############################ 2025-12-09T17:02:11,704 # Package would be ignored # 2025-12-09T17:02:11,704 ############################ 2025-12-09T17:02:11,704 Python recognizes 'multiqc.modules.homer' as an importable package[^1], 2025-12-09T17:02:11,705 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,706 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,706 package, please make sure that 'multiqc.modules.homer' is explicitly added 2025-12-09T17:02:11,706 to the `packages` configuration field. 2025-12-09T17:02:11,707 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,708 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,709 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,710 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,711 If you don't want 'multiqc.modules.homer' to be distributed and are 2025-12-09T17:02:11,711 already explicitly excluding 'multiqc.modules.homer' via 2025-12-09T17:02:11,711 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,713 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,714 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,715 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,716 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,716 even if it does not contain any `.py` files. 2025-12-09T17:02:11,717 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,717 directory, all directories are treated like packages. 2025-12-09T17:02:11,718 ******************************************************************************** 2025-12-09T17:02:11,718 !! 2025-12-09T17:02:11,719 check.warn(importable) 2025-12-09T17:02:11,719 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.hops' is absent from the `packages` configuration. 2025-12-09T17:02:11,720 !! 2025-12-09T17:02:11,721 ******************************************************************************** 2025-12-09T17:02:11,721 ############################ 2025-12-09T17:02:11,722 # Package would be ignored # 2025-12-09T17:02:11,722 ############################ 2025-12-09T17:02:11,722 Python recognizes 'multiqc.modules.hops' as an importable package[^1], 2025-12-09T17:02:11,723 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,723 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,724 package, please make sure that 'multiqc.modules.hops' is explicitly added 2025-12-09T17:02:11,724 to the `packages` configuration field. 2025-12-09T17:02:11,725 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,725 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,726 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,726 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,727 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,728 If you don't want 'multiqc.modules.hops' to be distributed and are 2025-12-09T17:02:11,728 already explicitly excluding 'multiqc.modules.hops' via 2025-12-09T17:02:11,729 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,729 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,729 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,731 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,732 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,733 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,734 even if it does not contain any `.py` files. 2025-12-09T17:02:11,734 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,735 directory, all directories are treated like packages. 2025-12-09T17:02:11,735 ******************************************************************************** 2025-12-09T17:02:11,736 !! 2025-12-09T17:02:11,737 check.warn(importable) 2025-12-09T17:02:11,737 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.hostile' is absent from the `packages` configuration. 2025-12-09T17:02:11,738 !! 2025-12-09T17:02:11,739 ******************************************************************************** 2025-12-09T17:02:11,740 ############################ 2025-12-09T17:02:11,740 # Package would be ignored # 2025-12-09T17:02:11,741 ############################ 2025-12-09T17:02:11,741 Python recognizes 'multiqc.modules.hostile' as an importable package[^1], 2025-12-09T17:02:11,742 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,742 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,743 package, please make sure that 'multiqc.modules.hostile' is explicitly added 2025-12-09T17:02:11,743 to the `packages` configuration field. 2025-12-09T17:02:11,744 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,745 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,745 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,746 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,747 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,749 If you don't want 'multiqc.modules.hostile' to be distributed and are 2025-12-09T17:02:11,749 already explicitly excluding 'multiqc.modules.hostile' via 2025-12-09T17:02:11,749 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,750 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,750 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,751 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,752 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,753 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,753 even if it does not contain any `.py` files. 2025-12-09T17:02:11,753 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,754 directory, all directories are treated like packages. 2025-12-09T17:02:11,754 ******************************************************************************** 2025-12-09T17:02:11,755 !! 2025-12-09T17:02:11,755 check.warn(importable) 2025-12-09T17:02:11,756 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.htseq' is absent from the `packages` configuration. 2025-12-09T17:02:11,756 !! 2025-12-09T17:02:11,757 ******************************************************************************** 2025-12-09T17:02:11,757 ############################ 2025-12-09T17:02:11,758 # Package would be ignored # 2025-12-09T17:02:11,758 ############################ 2025-12-09T17:02:11,758 Python recognizes 'multiqc.modules.htseq' as an importable package[^1], 2025-12-09T17:02:11,759 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,760 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,760 package, please make sure that 'multiqc.modules.htseq' is explicitly added 2025-12-09T17:02:11,761 to the `packages` configuration field. 2025-12-09T17:02:11,762 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,762 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,763 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,764 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,765 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,766 If you don't want 'multiqc.modules.htseq' to be distributed and are 2025-12-09T17:02:11,766 already explicitly excluding 'multiqc.modules.htseq' via 2025-12-09T17:02:11,767 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,767 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,768 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,769 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,769 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,771 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,771 even if it does not contain any `.py` files. 2025-12-09T17:02:11,772 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,772 directory, all directories are treated like packages. 2025-12-09T17:02:11,773 ******************************************************************************** 2025-12-09T17:02:11,774 !! 2025-12-09T17:02:11,775 check.warn(importable) 2025-12-09T17:02:11,775 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.humid' is absent from the `packages` configuration. 2025-12-09T17:02:11,775 !! 2025-12-09T17:02:11,776 ******************************************************************************** 2025-12-09T17:02:11,776 ############################ 2025-12-09T17:02:11,777 # Package would be ignored # 2025-12-09T17:02:11,777 ############################ 2025-12-09T17:02:11,778 Python recognizes 'multiqc.modules.humid' as an importable package[^1], 2025-12-09T17:02:11,778 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,779 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,779 package, please make sure that 'multiqc.modules.humid' is explicitly added 2025-12-09T17:02:11,779 to the `packages` configuration field. 2025-12-09T17:02:11,780 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,781 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,782 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,783 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,783 If you don't want 'multiqc.modules.humid' to be distributed and are 2025-12-09T17:02:11,784 already explicitly excluding 'multiqc.modules.humid' via 2025-12-09T17:02:11,784 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,785 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,785 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,786 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,787 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,788 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,789 even if it does not contain any `.py` files. 2025-12-09T17:02:11,790 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,790 directory, all directories are treated like packages. 2025-12-09T17:02:11,791 ******************************************************************************** 2025-12-09T17:02:11,792 !! 2025-12-09T17:02:11,792 check.warn(importable) 2025-12-09T17:02:11,793 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.interop' is absent from the `packages` configuration. 2025-12-09T17:02:11,793 !! 2025-12-09T17:02:11,794 ******************************************************************************** 2025-12-09T17:02:11,794 ############################ 2025-12-09T17:02:11,795 # Package would be ignored # 2025-12-09T17:02:11,795 ############################ 2025-12-09T17:02:11,796 Python recognizes 'multiqc.modules.interop' as an importable package[^1], 2025-12-09T17:02:11,796 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,797 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,798 package, please make sure that 'multiqc.modules.interop' is explicitly added 2025-12-09T17:02:11,798 to the `packages` configuration field. 2025-12-09T17:02:11,799 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,800 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,801 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,801 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,802 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,803 If you don't want 'multiqc.modules.interop' to be distributed and are 2025-12-09T17:02:11,803 already explicitly excluding 'multiqc.modules.interop' via 2025-12-09T17:02:11,803 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,804 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,804 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,805 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,806 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,807 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,807 even if it does not contain any `.py` files. 2025-12-09T17:02:11,807 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,808 directory, all directories are treated like packages. 2025-12-09T17:02:11,808 ******************************************************************************** 2025-12-09T17:02:11,809 !! 2025-12-09T17:02:11,810 check.warn(importable) 2025-12-09T17:02:11,810 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.isoseq' is absent from the `packages` configuration. 2025-12-09T17:02:11,810 !! 2025-12-09T17:02:11,811 ******************************************************************************** 2025-12-09T17:02:11,812 ############################ 2025-12-09T17:02:11,812 # Package would be ignored # 2025-12-09T17:02:11,813 ############################ 2025-12-09T17:02:11,813 Python recognizes 'multiqc.modules.isoseq' as an importable package[^1], 2025-12-09T17:02:11,814 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,815 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,815 package, please make sure that 'multiqc.modules.isoseq' is explicitly added 2025-12-09T17:02:11,816 to the `packages` configuration field. 2025-12-09T17:02:11,817 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,818 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,819 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,821 If you don't want 'multiqc.modules.isoseq' to be distributed and are 2025-12-09T17:02:11,821 already explicitly excluding 'multiqc.modules.isoseq' via 2025-12-09T17:02:11,822 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,822 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,822 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,824 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,825 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,827 even if it does not contain any `.py` files. 2025-12-09T17:02:11,827 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,828 directory, all directories are treated like packages. 2025-12-09T17:02:11,828 ******************************************************************************** 2025-12-09T17:02:11,829 !! 2025-12-09T17:02:11,829 check.warn(importable) 2025-12-09T17:02:11,829 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ivar' is absent from the `packages` configuration. 2025-12-09T17:02:11,830 !! 2025-12-09T17:02:11,831 ******************************************************************************** 2025-12-09T17:02:11,831 ############################ 2025-12-09T17:02:11,831 # Package would be ignored # 2025-12-09T17:02:11,832 ############################ 2025-12-09T17:02:11,832 Python recognizes 'multiqc.modules.ivar' as an importable package[^1], 2025-12-09T17:02:11,832 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,833 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,834 package, please make sure that 'multiqc.modules.ivar' is explicitly added 2025-12-09T17:02:11,834 to the `packages` configuration field. 2025-12-09T17:02:11,835 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,836 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,837 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,838 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,839 If you don't want 'multiqc.modules.ivar' to be distributed and are 2025-12-09T17:02:11,839 already explicitly excluding 'multiqc.modules.ivar' via 2025-12-09T17:02:11,840 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,841 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,842 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,843 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,845 even if it does not contain any `.py` files. 2025-12-09T17:02:11,846 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,846 directory, all directories are treated like packages. 2025-12-09T17:02:11,847 ******************************************************************************** 2025-12-09T17:02:11,848 !! 2025-12-09T17:02:11,848 check.warn(importable) 2025-12-09T17:02:11,849 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.jcvi' is absent from the `packages` configuration. 2025-12-09T17:02:11,849 !! 2025-12-09T17:02:11,850 ******************************************************************************** 2025-12-09T17:02:11,851 ############################ 2025-12-09T17:02:11,851 # Package would be ignored # 2025-12-09T17:02:11,852 ############################ 2025-12-09T17:02:11,852 Python recognizes 'multiqc.modules.jcvi' as an importable package[^1], 2025-12-09T17:02:11,853 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,854 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,854 package, please make sure that 'multiqc.modules.jcvi' is explicitly added 2025-12-09T17:02:11,855 to the `packages` configuration field. 2025-12-09T17:02:11,855 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,856 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,856 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,857 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,858 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,859 If you don't want 'multiqc.modules.jcvi' to be distributed and are 2025-12-09T17:02:11,859 already explicitly excluding 'multiqc.modules.jcvi' via 2025-12-09T17:02:11,859 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,860 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,860 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,861 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,862 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,863 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,863 even if it does not contain any `.py` files. 2025-12-09T17:02:11,864 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,864 directory, all directories are treated like packages. 2025-12-09T17:02:11,865 ******************************************************************************** 2025-12-09T17:02:11,866 !! 2025-12-09T17:02:11,866 check.warn(importable) 2025-12-09T17:02:11,867 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.jellyfish' is absent from the `packages` configuration. 2025-12-09T17:02:11,867 !! 2025-12-09T17:02:11,868 ******************************************************************************** 2025-12-09T17:02:11,869 ############################ 2025-12-09T17:02:11,870 # Package would be ignored # 2025-12-09T17:02:11,870 ############################ 2025-12-09T17:02:11,871 Python recognizes 'multiqc.modules.jellyfish' as an importable package[^1], 2025-12-09T17:02:11,871 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,872 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,873 package, please make sure that 'multiqc.modules.jellyfish' is explicitly added 2025-12-09T17:02:11,873 to the `packages` configuration field. 2025-12-09T17:02:11,874 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,875 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,875 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,876 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,877 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,878 If you don't want 'multiqc.modules.jellyfish' to be distributed and are 2025-12-09T17:02:11,878 already explicitly excluding 'multiqc.modules.jellyfish' via 2025-12-09T17:02:11,879 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,880 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,880 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,881 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,882 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,883 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,883 even if it does not contain any `.py` files. 2025-12-09T17:02:11,884 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,884 directory, all directories are treated like packages. 2025-12-09T17:02:11,884 ******************************************************************************** 2025-12-09T17:02:11,885 !! 2025-12-09T17:02:11,885 check.warn(importable) 2025-12-09T17:02:11,886 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.kaiju' is absent from the `packages` configuration. 2025-12-09T17:02:11,886 !! 2025-12-09T17:02:11,887 ******************************************************************************** 2025-12-09T17:02:11,887 ############################ 2025-12-09T17:02:11,888 # Package would be ignored # 2025-12-09T17:02:11,888 ############################ 2025-12-09T17:02:11,888 Python recognizes 'multiqc.modules.kaiju' as an importable package[^1], 2025-12-09T17:02:11,889 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,889 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,890 package, please make sure that 'multiqc.modules.kaiju' is explicitly added 2025-12-09T17:02:11,890 to the `packages` configuration field. 2025-12-09T17:02:11,891 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,892 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,892 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,893 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,894 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,896 If you don't want 'multiqc.modules.kaiju' to be distributed and are 2025-12-09T17:02:11,896 already explicitly excluding 'multiqc.modules.kaiju' via 2025-12-09T17:02:11,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,897 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,898 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,899 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,900 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,901 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,901 even if it does not contain any `.py` files. 2025-12-09T17:02:11,902 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,902 directory, all directories are treated like packages. 2025-12-09T17:02:11,903 ******************************************************************************** 2025-12-09T17:02:11,904 !! 2025-12-09T17:02:11,904 check.warn(importable) 2025-12-09T17:02:11,905 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.kallisto' is absent from the `packages` configuration. 2025-12-09T17:02:11,906 !! 2025-12-09T17:02:11,907 ******************************************************************************** 2025-12-09T17:02:11,907 ############################ 2025-12-09T17:02:11,908 # Package would be ignored # 2025-12-09T17:02:11,908 ############################ 2025-12-09T17:02:11,908 Python recognizes 'multiqc.modules.kallisto' as an importable package[^1], 2025-12-09T17:02:11,909 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,909 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,910 package, please make sure that 'multiqc.modules.kallisto' is explicitly added 2025-12-09T17:02:11,910 to the `packages` configuration field. 2025-12-09T17:02:11,911 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,911 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,911 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,912 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,913 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,913 If you don't want 'multiqc.modules.kallisto' to be distributed and are 2025-12-09T17:02:11,914 already explicitly excluding 'multiqc.modules.kallisto' via 2025-12-09T17:02:11,914 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,915 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,915 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,916 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,917 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,919 even if it does not contain any `.py` files. 2025-12-09T17:02:11,920 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,920 directory, all directories are treated like packages. 2025-12-09T17:02:11,921 ******************************************************************************** 2025-12-09T17:02:11,922 !! 2025-12-09T17:02:11,922 check.warn(importable) 2025-12-09T17:02:11,923 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.kat' is absent from the `packages` configuration. 2025-12-09T17:02:11,924 !! 2025-12-09T17:02:11,925 ******************************************************************************** 2025-12-09T17:02:11,925 ############################ 2025-12-09T17:02:11,925 # Package would be ignored # 2025-12-09T17:02:11,926 ############################ 2025-12-09T17:02:11,926 Python recognizes 'multiqc.modules.kat' as an importable package[^1], 2025-12-09T17:02:11,927 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,928 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,928 package, please make sure that 'multiqc.modules.kat' is explicitly added 2025-12-09T17:02:11,929 to the `packages` configuration field. 2025-12-09T17:02:11,930 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,931 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,933 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,936 If you don't want 'multiqc.modules.kat' to be distributed and are 2025-12-09T17:02:11,936 already explicitly excluding 'multiqc.modules.kat' via 2025-12-09T17:02:11,936 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,937 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,937 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,938 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,939 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,941 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,941 even if it does not contain any `.py` files. 2025-12-09T17:02:11,942 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,942 directory, all directories are treated like packages. 2025-12-09T17:02:11,942 ******************************************************************************** 2025-12-09T17:02:11,943 !! 2025-12-09T17:02:11,944 check.warn(importable) 2025-12-09T17:02:11,944 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.kraken' is absent from the `packages` configuration. 2025-12-09T17:02:11,945 !! 2025-12-09T17:02:11,946 ******************************************************************************** 2025-12-09T17:02:11,946 ############################ 2025-12-09T17:02:11,947 # Package would be ignored # 2025-12-09T17:02:11,947 ############################ 2025-12-09T17:02:11,948 Python recognizes 'multiqc.modules.kraken' as an importable package[^1], 2025-12-09T17:02:11,948 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,949 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,950 package, please make sure that 'multiqc.modules.kraken' is explicitly added 2025-12-09T17:02:11,950 to the `packages` configuration field. 2025-12-09T17:02:11,951 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,952 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,953 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,954 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,955 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,956 If you don't want 'multiqc.modules.kraken' to be distributed and are 2025-12-09T17:02:11,957 already explicitly excluding 'multiqc.modules.kraken' via 2025-12-09T17:02:11,957 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,958 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,958 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,960 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,961 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,963 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,963 even if it does not contain any `.py` files. 2025-12-09T17:02:11,964 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,965 directory, all directories are treated like packages. 2025-12-09T17:02:11,965 ******************************************************************************** 2025-12-09T17:02:11,967 !! 2025-12-09T17:02:11,967 check.warn(importable) 2025-12-09T17:02:11,968 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.leehom' is absent from the `packages` configuration. 2025-12-09T17:02:11,968 !! 2025-12-09T17:02:11,969 ******************************************************************************** 2025-12-09T17:02:11,969 ############################ 2025-12-09T17:02:11,970 # Package would be ignored # 2025-12-09T17:02:11,970 ############################ 2025-12-09T17:02:11,971 Python recognizes 'multiqc.modules.leehom' as an importable package[^1], 2025-12-09T17:02:11,971 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,972 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,973 package, please make sure that 'multiqc.modules.leehom' is explicitly added 2025-12-09T17:02:11,973 to the `packages` configuration field. 2025-12-09T17:02:11,974 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,975 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:11,975 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:11,976 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:11,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:11,978 If you don't want 'multiqc.modules.leehom' to be distributed and are 2025-12-09T17:02:11,979 already explicitly excluding 'multiqc.modules.leehom' via 2025-12-09T17:02:11,979 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:11,980 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:11,981 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:11,982 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:11,983 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:11,985 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:11,986 even if it does not contain any `.py` files. 2025-12-09T17:02:11,987 On the other hand, currently there is no concept of package data 2025-12-09T17:02:11,987 directory, all directories are treated like packages. 2025-12-09T17:02:11,988 ******************************************************************************** 2025-12-09T17:02:11,989 !! 2025-12-09T17:02:11,990 check.warn(importable) 2025-12-09T17:02:11,990 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.librarian' is absent from the `packages` configuration. 2025-12-09T17:02:11,991 !! 2025-12-09T17:02:11,992 ******************************************************************************** 2025-12-09T17:02:11,992 ############################ 2025-12-09T17:02:11,993 # Package would be ignored # 2025-12-09T17:02:11,994 ############################ 2025-12-09T17:02:11,994 Python recognizes 'multiqc.modules.librarian' as an importable package[^1], 2025-12-09T17:02:11,995 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:11,996 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:11,997 package, please make sure that 'multiqc.modules.librarian' is explicitly added 2025-12-09T17:02:11,997 to the `packages` configuration field. 2025-12-09T17:02:11,999 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:11,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,000 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,001 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,002 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,003 If you don't want 'multiqc.modules.librarian' to be distributed and are 2025-12-09T17:02:12,003 already explicitly excluding 'multiqc.modules.librarian' via 2025-12-09T17:02:12,004 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,004 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,004 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,005 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,008 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,008 even if it does not contain any `.py` files. 2025-12-09T17:02:12,009 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,009 directory, all directories are treated like packages. 2025-12-09T17:02:12,010 ******************************************************************************** 2025-12-09T17:02:12,011 !! 2025-12-09T17:02:12,012 check.warn(importable) 2025-12-09T17:02:12,012 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.lima' is absent from the `packages` configuration. 2025-12-09T17:02:12,013 !! 2025-12-09T17:02:12,014 ******************************************************************************** 2025-12-09T17:02:12,015 ############################ 2025-12-09T17:02:12,015 # Package would be ignored # 2025-12-09T17:02:12,016 ############################ 2025-12-09T17:02:12,017 Python recognizes 'multiqc.modules.lima' as an importable package[^1], 2025-12-09T17:02:12,017 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,018 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,019 package, please make sure that 'multiqc.modules.lima' is explicitly added 2025-12-09T17:02:12,020 to the `packages` configuration field. 2025-12-09T17:02:12,022 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,023 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,024 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,025 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,026 If you don't want 'multiqc.modules.lima' to be distributed and are 2025-12-09T17:02:12,027 already explicitly excluding 'multiqc.modules.lima' via 2025-12-09T17:02:12,027 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,028 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,028 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,030 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,031 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,033 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,034 even if it does not contain any `.py` files. 2025-12-09T17:02:12,034 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,035 directory, all directories are treated like packages. 2025-12-09T17:02:12,035 ******************************************************************************** 2025-12-09T17:02:12,036 !! 2025-12-09T17:02:12,036 check.warn(importable) 2025-12-09T17:02:12,037 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.longranger' is absent from the `packages` configuration. 2025-12-09T17:02:12,037 !! 2025-12-09T17:02:12,038 ******************************************************************************** 2025-12-09T17:02:12,039 ############################ 2025-12-09T17:02:12,039 # Package would be ignored # 2025-12-09T17:02:12,040 ############################ 2025-12-09T17:02:12,040 Python recognizes 'multiqc.modules.longranger' as an importable package[^1], 2025-12-09T17:02:12,041 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,042 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,042 package, please make sure that 'multiqc.modules.longranger' is explicitly added 2025-12-09T17:02:12,042 to the `packages` configuration field. 2025-12-09T17:02:12,043 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,044 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,046 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,047 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,048 If you don't want 'multiqc.modules.longranger' to be distributed and are 2025-12-09T17:02:12,048 already explicitly excluding 'multiqc.modules.longranger' via 2025-12-09T17:02:12,049 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,049 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,050 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,051 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,052 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,054 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,054 even if it does not contain any `.py` files. 2025-12-09T17:02:12,055 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,056 directory, all directories are treated like packages. 2025-12-09T17:02:12,057 ******************************************************************************** 2025-12-09T17:02:12,058 !! 2025-12-09T17:02:12,058 check.warn(importable) 2025-12-09T17:02:12,059 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.macs2' is absent from the `packages` configuration. 2025-12-09T17:02:12,059 !! 2025-12-09T17:02:12,061 ******************************************************************************** 2025-12-09T17:02:12,061 ############################ 2025-12-09T17:02:12,062 # Package would be ignored # 2025-12-09T17:02:12,063 ############################ 2025-12-09T17:02:12,063 Python recognizes 'multiqc.modules.macs2' as an importable package[^1], 2025-12-09T17:02:12,064 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,065 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,066 package, please make sure that 'multiqc.modules.macs2' is explicitly added 2025-12-09T17:02:12,066 to the `packages` configuration field. 2025-12-09T17:02:12,067 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,068 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,069 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,070 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,071 If you don't want 'multiqc.modules.macs2' to be distributed and are 2025-12-09T17:02:12,071 already explicitly excluding 'multiqc.modules.macs2' via 2025-12-09T17:02:12,072 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,072 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,073 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,074 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,075 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,076 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,077 even if it does not contain any `.py` files. 2025-12-09T17:02:12,077 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,078 directory, all directories are treated like packages. 2025-12-09T17:02:12,078 ******************************************************************************** 2025-12-09T17:02:12,080 !! 2025-12-09T17:02:12,080 check.warn(importable) 2025-12-09T17:02:12,081 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.malt' is absent from the `packages` configuration. 2025-12-09T17:02:12,082 !! 2025-12-09T17:02:12,083 ******************************************************************************** 2025-12-09T17:02:12,084 ############################ 2025-12-09T17:02:12,084 # Package would be ignored # 2025-12-09T17:02:12,085 ############################ 2025-12-09T17:02:12,086 Python recognizes 'multiqc.modules.malt' as an importable package[^1], 2025-12-09T17:02:12,086 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,087 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,088 package, please make sure that 'multiqc.modules.malt' is explicitly added 2025-12-09T17:02:12,088 to the `packages` configuration field. 2025-12-09T17:02:12,089 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,091 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,092 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,094 If you don't want 'multiqc.modules.malt' to be distributed and are 2025-12-09T17:02:12,095 already explicitly excluding 'multiqc.modules.malt' via 2025-12-09T17:02:12,096 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,096 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,097 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,098 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,099 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,100 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,101 even if it does not contain any `.py` files. 2025-12-09T17:02:12,101 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,102 directory, all directories are treated like packages. 2025-12-09T17:02:12,102 ******************************************************************************** 2025-12-09T17:02:12,103 !! 2025-12-09T17:02:12,104 check.warn(importable) 2025-12-09T17:02:12,104 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.mapdamage' is absent from the `packages` configuration. 2025-12-09T17:02:12,104 !! 2025-12-09T17:02:12,105 ******************************************************************************** 2025-12-09T17:02:12,106 ############################ 2025-12-09T17:02:12,106 # Package would be ignored # 2025-12-09T17:02:12,107 ############################ 2025-12-09T17:02:12,107 Python recognizes 'multiqc.modules.mapdamage' as an importable package[^1], 2025-12-09T17:02:12,108 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,109 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,110 package, please make sure that 'multiqc.modules.mapdamage' is explicitly added 2025-12-09T17:02:12,111 to the `packages` configuration field. 2025-12-09T17:02:12,112 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,113 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,113 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,115 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,116 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,117 If you don't want 'multiqc.modules.mapdamage' to be distributed and are 2025-12-09T17:02:12,118 already explicitly excluding 'multiqc.modules.mapdamage' via 2025-12-09T17:02:12,119 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,120 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,121 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,122 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,124 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,125 even if it does not contain any `.py` files. 2025-12-09T17:02:12,125 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,126 directory, all directories are treated like packages. 2025-12-09T17:02:12,126 ******************************************************************************** 2025-12-09T17:02:12,128 !! 2025-12-09T17:02:12,128 check.warn(importable) 2025-12-09T17:02:12,129 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.megahit' is absent from the `packages` configuration. 2025-12-09T17:02:12,130 !! 2025-12-09T17:02:12,131 ******************************************************************************** 2025-12-09T17:02:12,131 ############################ 2025-12-09T17:02:12,132 # Package would be ignored # 2025-12-09T17:02:12,132 ############################ 2025-12-09T17:02:12,133 Python recognizes 'multiqc.modules.megahit' as an importable package[^1], 2025-12-09T17:02:12,133 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,134 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,134 package, please make sure that 'multiqc.modules.megahit' is explicitly added 2025-12-09T17:02:12,135 to the `packages` configuration field. 2025-12-09T17:02:12,136 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,136 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,137 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,138 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,138 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,139 If you don't want 'multiqc.modules.megahit' to be distributed and are 2025-12-09T17:02:12,140 already explicitly excluding 'multiqc.modules.megahit' via 2025-12-09T17:02:12,140 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,141 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,142 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,146 even if it does not contain any `.py` files. 2025-12-09T17:02:12,147 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,147 directory, all directories are treated like packages. 2025-12-09T17:02:12,148 ******************************************************************************** 2025-12-09T17:02:12,149 !! 2025-12-09T17:02:12,150 check.warn(importable) 2025-12-09T17:02:12,150 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.metaphlan' is absent from the `packages` configuration. 2025-12-09T17:02:12,151 !! 2025-12-09T17:02:12,152 ******************************************************************************** 2025-12-09T17:02:12,153 ############################ 2025-12-09T17:02:12,153 # Package would be ignored # 2025-12-09T17:02:12,154 ############################ 2025-12-09T17:02:12,154 Python recognizes 'multiqc.modules.metaphlan' as an importable package[^1], 2025-12-09T17:02:12,155 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,156 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,157 package, please make sure that 'multiqc.modules.metaphlan' is explicitly added 2025-12-09T17:02:12,157 to the `packages` configuration field. 2025-12-09T17:02:12,158 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,159 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,161 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,162 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,162 If you don't want 'multiqc.modules.metaphlan' to be distributed and are 2025-12-09T17:02:12,163 already explicitly excluding 'multiqc.modules.metaphlan' via 2025-12-09T17:02:12,163 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,164 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,164 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,165 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,166 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,167 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,168 even if it does not contain any `.py` files. 2025-12-09T17:02:12,168 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,169 directory, all directories are treated like packages. 2025-12-09T17:02:12,169 ******************************************************************************** 2025-12-09T17:02:12,170 !! 2025-12-09T17:02:12,170 check.warn(importable) 2025-12-09T17:02:12,171 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.methylqa' is absent from the `packages` configuration. 2025-12-09T17:02:12,171 !! 2025-12-09T17:02:12,173 ******************************************************************************** 2025-12-09T17:02:12,173 ############################ 2025-12-09T17:02:12,174 # Package would be ignored # 2025-12-09T17:02:12,175 ############################ 2025-12-09T17:02:12,175 Python recognizes 'multiqc.modules.methylqa' as an importable package[^1], 2025-12-09T17:02:12,176 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,177 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,178 package, please make sure that 'multiqc.modules.methylqa' is explicitly added 2025-12-09T17:02:12,178 to the `packages` configuration field. 2025-12-09T17:02:12,180 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,180 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,181 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,182 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,183 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,186 If you don't want 'multiqc.modules.methylqa' to be distributed and are 2025-12-09T17:02:12,187 already explicitly excluding 'multiqc.modules.methylqa' via 2025-12-09T17:02:12,187 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,188 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,188 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,189 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,191 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,192 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,193 even if it does not contain any `.py` files. 2025-12-09T17:02:12,194 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,194 directory, all directories are treated like packages. 2025-12-09T17:02:12,195 ******************************************************************************** 2025-12-09T17:02:12,196 !! 2025-12-09T17:02:12,197 check.warn(importable) 2025-12-09T17:02:12,197 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.mgikit' is absent from the `packages` configuration. 2025-12-09T17:02:12,198 !! 2025-12-09T17:02:12,199 ******************************************************************************** 2025-12-09T17:02:12,200 ############################ 2025-12-09T17:02:12,200 # Package would be ignored # 2025-12-09T17:02:12,201 ############################ 2025-12-09T17:02:12,201 Python recognizes 'multiqc.modules.mgikit' as an importable package[^1], 2025-12-09T17:02:12,201 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,202 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,203 package, please make sure that 'multiqc.modules.mgikit' is explicitly added 2025-12-09T17:02:12,203 to the `packages` configuration field. 2025-12-09T17:02:12,204 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,205 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,206 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,208 If you don't want 'multiqc.modules.mgikit' to be distributed and are 2025-12-09T17:02:12,209 already explicitly excluding 'multiqc.modules.mgikit' via 2025-12-09T17:02:12,210 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,211 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,211 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,213 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,217 even if it does not contain any `.py` files. 2025-12-09T17:02:12,217 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,218 directory, all directories are treated like packages. 2025-12-09T17:02:12,218 ******************************************************************************** 2025-12-09T17:02:12,220 !! 2025-12-09T17:02:12,220 check.warn(importable) 2025-12-09T17:02:12,221 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.minionqc' is absent from the `packages` configuration. 2025-12-09T17:02:12,221 !! 2025-12-09T17:02:12,222 ******************************************************************************** 2025-12-09T17:02:12,223 ############################ 2025-12-09T17:02:12,224 # Package would be ignored # 2025-12-09T17:02:12,224 ############################ 2025-12-09T17:02:12,225 Python recognizes 'multiqc.modules.minionqc' as an importable package[^1], 2025-12-09T17:02:12,225 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,227 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,227 package, please make sure that 'multiqc.modules.minionqc' is explicitly added 2025-12-09T17:02:12,228 to the `packages` configuration field. 2025-12-09T17:02:12,229 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,230 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,231 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,233 If you don't want 'multiqc.modules.minionqc' to be distributed and are 2025-12-09T17:02:12,233 already explicitly excluding 'multiqc.modules.minionqc' via 2025-12-09T17:02:12,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,235 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,236 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,237 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,238 even if it does not contain any `.py` files. 2025-12-09T17:02:12,239 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,240 directory, all directories are treated like packages. 2025-12-09T17:02:12,240 ******************************************************************************** 2025-12-09T17:02:12,241 !! 2025-12-09T17:02:12,242 check.warn(importable) 2025-12-09T17:02:12,243 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.mirtop' is absent from the `packages` configuration. 2025-12-09T17:02:12,243 !! 2025-12-09T17:02:12,245 ******************************************************************************** 2025-12-09T17:02:12,245 ############################ 2025-12-09T17:02:12,246 # Package would be ignored # 2025-12-09T17:02:12,247 ############################ 2025-12-09T17:02:12,247 Python recognizes 'multiqc.modules.mirtop' as an importable package[^1], 2025-12-09T17:02:12,248 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,249 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,250 package, please make sure that 'multiqc.modules.mirtop' is explicitly added 2025-12-09T17:02:12,250 to the `packages` configuration field. 2025-12-09T17:02:12,252 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,252 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,253 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,254 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,255 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,256 If you don't want 'multiqc.modules.mirtop' to be distributed and are 2025-12-09T17:02:12,257 already explicitly excluding 'multiqc.modules.mirtop' via 2025-12-09T17:02:12,257 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,258 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,259 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,260 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,261 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,263 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,263 even if it does not contain any `.py` files. 2025-12-09T17:02:12,264 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,264 directory, all directories are treated like packages. 2025-12-09T17:02:12,265 ******************************************************************************** 2025-12-09T17:02:12,265 !! 2025-12-09T17:02:12,266 check.warn(importable) 2025-12-09T17:02:12,266 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.mirtrace' is absent from the `packages` configuration. 2025-12-09T17:02:12,267 !! 2025-12-09T17:02:12,268 ******************************************************************************** 2025-12-09T17:02:12,268 ############################ 2025-12-09T17:02:12,269 # Package would be ignored # 2025-12-09T17:02:12,269 ############################ 2025-12-09T17:02:12,269 Python recognizes 'multiqc.modules.mirtrace' as an importable package[^1], 2025-12-09T17:02:12,270 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,271 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,271 package, please make sure that 'multiqc.modules.mirtrace' is explicitly added 2025-12-09T17:02:12,272 to the `packages` configuration field. 2025-12-09T17:02:12,273 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,274 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,275 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,277 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,278 If you don't want 'multiqc.modules.mirtrace' to be distributed and are 2025-12-09T17:02:12,278 already explicitly excluding 'multiqc.modules.mirtrace' via 2025-12-09T17:02:12,279 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,280 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,280 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,282 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,283 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,284 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,285 even if it does not contain any `.py` files. 2025-12-09T17:02:12,285 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,286 directory, all directories are treated like packages. 2025-12-09T17:02:12,287 ******************************************************************************** 2025-12-09T17:02:12,290 !! 2025-12-09T17:02:12,291 check.warn(importable) 2025-12-09T17:02:12,292 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.mosaicatcher' is absent from the `packages` configuration. 2025-12-09T17:02:12,292 !! 2025-12-09T17:02:12,293 ******************************************************************************** 2025-12-09T17:02:12,294 ############################ 2025-12-09T17:02:12,295 # Package would be ignored # 2025-12-09T17:02:12,296 ############################ 2025-12-09T17:02:12,296 Python recognizes 'multiqc.modules.mosaicatcher' as an importable package[^1], 2025-12-09T17:02:12,297 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,297 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,298 package, please make sure that 'multiqc.modules.mosaicatcher' is explicitly added 2025-12-09T17:02:12,298 to the `packages` configuration field. 2025-12-09T17:02:12,299 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,300 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,301 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,302 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,303 If you don't want 'multiqc.modules.mosaicatcher' to be distributed and are 2025-12-09T17:02:12,303 already explicitly excluding 'multiqc.modules.mosaicatcher' via 2025-12-09T17:02:12,304 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,304 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,305 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,306 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,307 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,309 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,309 even if it does not contain any `.py` files. 2025-12-09T17:02:12,310 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,311 directory, all directories are treated like packages. 2025-12-09T17:02:12,311 ******************************************************************************** 2025-12-09T17:02:12,313 !! 2025-12-09T17:02:12,313 check.warn(importable) 2025-12-09T17:02:12,314 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.mosdepth' is absent from the `packages` configuration. 2025-12-09T17:02:12,315 !! 2025-12-09T17:02:12,316 ******************************************************************************** 2025-12-09T17:02:12,316 ############################ 2025-12-09T17:02:12,317 # Package would be ignored # 2025-12-09T17:02:12,318 ############################ 2025-12-09T17:02:12,318 Python recognizes 'multiqc.modules.mosdepth' as an importable package[^1], 2025-12-09T17:02:12,319 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,320 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,320 package, please make sure that 'multiqc.modules.mosdepth' is explicitly added 2025-12-09T17:02:12,321 to the `packages` configuration field. 2025-12-09T17:02:12,322 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,323 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,323 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,325 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,326 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,327 If you don't want 'multiqc.modules.mosdepth' to be distributed and are 2025-12-09T17:02:12,328 already explicitly excluding 'multiqc.modules.mosdepth' via 2025-12-09T17:02:12,329 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,329 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,330 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,331 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,332 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,333 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,333 even if it does not contain any `.py` files. 2025-12-09T17:02:12,334 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,334 directory, all directories are treated like packages. 2025-12-09T17:02:12,335 ******************************************************************************** 2025-12-09T17:02:12,336 !! 2025-12-09T17:02:12,336 check.warn(importable) 2025-12-09T17:02:12,337 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.motus' is absent from the `packages` configuration. 2025-12-09T17:02:12,337 !! 2025-12-09T17:02:12,338 ******************************************************************************** 2025-12-09T17:02:12,338 ############################ 2025-12-09T17:02:12,339 # Package would be ignored # 2025-12-09T17:02:12,340 ############################ 2025-12-09T17:02:12,340 Python recognizes 'multiqc.modules.motus' as an importable package[^1], 2025-12-09T17:02:12,341 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,342 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,343 package, please make sure that 'multiqc.modules.motus' is explicitly added 2025-12-09T17:02:12,343 to the `packages` configuration field. 2025-12-09T17:02:12,344 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,345 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,346 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,347 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,348 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,350 If you don't want 'multiqc.modules.motus' to be distributed and are 2025-12-09T17:02:12,350 already explicitly excluding 'multiqc.modules.motus' via 2025-12-09T17:02:12,351 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,351 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,352 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,353 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,354 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,356 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,356 even if it does not contain any `.py` files. 2025-12-09T17:02:12,357 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,357 directory, all directories are treated like packages. 2025-12-09T17:02:12,358 ******************************************************************************** 2025-12-09T17:02:12,359 !! 2025-12-09T17:02:12,360 check.warn(importable) 2025-12-09T17:02:12,361 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.mtnucratio' is absent from the `packages` configuration. 2025-12-09T17:02:12,361 !! 2025-12-09T17:02:12,362 ******************************************************************************** 2025-12-09T17:02:12,363 ############################ 2025-12-09T17:02:12,363 # Package would be ignored # 2025-12-09T17:02:12,364 ############################ 2025-12-09T17:02:12,364 Python recognizes 'multiqc.modules.mtnucratio' as an importable package[^1], 2025-12-09T17:02:12,364 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,365 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,366 package, please make sure that 'multiqc.modules.mtnucratio' is explicitly added 2025-12-09T17:02:12,366 to the `packages` configuration field. 2025-12-09T17:02:12,367 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,368 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,369 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,370 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,371 If you don't want 'multiqc.modules.mtnucratio' to be distributed and are 2025-12-09T17:02:12,371 already explicitly excluding 'multiqc.modules.mtnucratio' via 2025-12-09T17:02:12,372 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,373 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,373 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,375 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,376 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,378 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,379 even if it does not contain any `.py` files. 2025-12-09T17:02:12,380 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,381 directory, all directories are treated like packages. 2025-12-09T17:02:12,382 ******************************************************************************** 2025-12-09T17:02:12,383 !! 2025-12-09T17:02:12,384 check.warn(importable) 2025-12-09T17:02:12,385 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.multivcfanalyzer' is absent from the `packages` configuration. 2025-12-09T17:02:12,385 !! 2025-12-09T17:02:12,386 ******************************************************************************** 2025-12-09T17:02:12,387 ############################ 2025-12-09T17:02:12,387 # Package would be ignored # 2025-12-09T17:02:12,388 ############################ 2025-12-09T17:02:12,388 Python recognizes 'multiqc.modules.multivcfanalyzer' as an importable package[^1], 2025-12-09T17:02:12,389 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,390 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,391 package, please make sure that 'multiqc.modules.multivcfanalyzer' is explicitly added 2025-12-09T17:02:12,394 to the `packages` configuration field. 2025-12-09T17:02:12,395 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,396 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,397 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,397 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,398 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,399 If you don't want 'multiqc.modules.multivcfanalyzer' to be distributed and are 2025-12-09T17:02:12,400 already explicitly excluding 'multiqc.modules.multivcfanalyzer' via 2025-12-09T17:02:12,400 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,401 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,401 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,402 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,403 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,404 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,405 even if it does not contain any `.py` files. 2025-12-09T17:02:12,405 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,406 directory, all directories are treated like packages. 2025-12-09T17:02:12,406 ******************************************************************************** 2025-12-09T17:02:12,407 !! 2025-12-09T17:02:12,408 check.warn(importable) 2025-12-09T17:02:12,408 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.nanoq' is absent from the `packages` configuration. 2025-12-09T17:02:12,409 !! 2025-12-09T17:02:12,410 ******************************************************************************** 2025-12-09T17:02:12,411 ############################ 2025-12-09T17:02:12,412 # Package would be ignored # 2025-12-09T17:02:12,412 ############################ 2025-12-09T17:02:12,413 Python recognizes 'multiqc.modules.nanoq' as an importable package[^1], 2025-12-09T17:02:12,414 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,415 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,416 package, please make sure that 'multiqc.modules.nanoq' is explicitly added 2025-12-09T17:02:12,416 to the `packages` configuration field. 2025-12-09T17:02:12,418 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,418 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,419 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,420 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,421 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,422 If you don't want 'multiqc.modules.nanoq' to be distributed and are 2025-12-09T17:02:12,423 already explicitly excluding 'multiqc.modules.nanoq' via 2025-12-09T17:02:12,423 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,425 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,426 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,427 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,429 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,429 even if it does not contain any `.py` files. 2025-12-09T17:02:12,431 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,431 directory, all directories are treated like packages. 2025-12-09T17:02:12,432 ******************************************************************************** 2025-12-09T17:02:12,432 !! 2025-12-09T17:02:12,433 check.warn(importable) 2025-12-09T17:02:12,433 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.nanostat' is absent from the `packages` configuration. 2025-12-09T17:02:12,434 !! 2025-12-09T17:02:12,435 ******************************************************************************** 2025-12-09T17:02:12,435 ############################ 2025-12-09T17:02:12,436 # Package would be ignored # 2025-12-09T17:02:12,436 ############################ 2025-12-09T17:02:12,437 Python recognizes 'multiqc.modules.nanostat' as an importable package[^1], 2025-12-09T17:02:12,437 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,438 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,438 package, please make sure that 'multiqc.modules.nanostat' is explicitly added 2025-12-09T17:02:12,439 to the `packages` configuration field. 2025-12-09T17:02:12,440 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,441 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,442 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,444 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,445 If you don't want 'multiqc.modules.nanostat' to be distributed and are 2025-12-09T17:02:12,446 already explicitly excluding 'multiqc.modules.nanostat' via 2025-12-09T17:02:12,446 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,447 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,448 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,449 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,450 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,452 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,453 even if it does not contain any `.py` files. 2025-12-09T17:02:12,453 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,454 directory, all directories are treated like packages. 2025-12-09T17:02:12,454 ******************************************************************************** 2025-12-09T17:02:12,456 !! 2025-12-09T17:02:12,456 check.warn(importable) 2025-12-09T17:02:12,457 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.nextclade' is absent from the `packages` configuration. 2025-12-09T17:02:12,457 !! 2025-12-09T17:02:12,459 ******************************************************************************** 2025-12-09T17:02:12,459 ############################ 2025-12-09T17:02:12,460 # Package would be ignored # 2025-12-09T17:02:12,460 ############################ 2025-12-09T17:02:12,461 Python recognizes 'multiqc.modules.nextclade' as an importable package[^1], 2025-12-09T17:02:12,462 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,463 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,464 package, please make sure that 'multiqc.modules.nextclade' is explicitly added 2025-12-09T17:02:12,464 to the `packages` configuration field. 2025-12-09T17:02:12,465 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,466 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,466 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,467 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,468 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,469 If you don't want 'multiqc.modules.nextclade' to be distributed and are 2025-12-09T17:02:12,469 already explicitly excluding 'multiqc.modules.nextclade' via 2025-12-09T17:02:12,470 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,470 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,471 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,472 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,473 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,475 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,475 even if it does not contain any `.py` files. 2025-12-09T17:02:12,476 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,477 directory, all directories are treated like packages. 2025-12-09T17:02:12,477 ******************************************************************************** 2025-12-09T17:02:12,479 !! 2025-12-09T17:02:12,479 check.warn(importable) 2025-12-09T17:02:12,480 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ngsbits' is absent from the `packages` configuration. 2025-12-09T17:02:12,481 !! 2025-12-09T17:02:12,482 ******************************************************************************** 2025-12-09T17:02:12,483 ############################ 2025-12-09T17:02:12,483 # Package would be ignored # 2025-12-09T17:02:12,484 ############################ 2025-12-09T17:02:12,485 Python recognizes 'multiqc.modules.ngsbits' as an importable package[^1], 2025-12-09T17:02:12,485 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,486 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,487 package, please make sure that 'multiqc.modules.ngsbits' is explicitly added 2025-12-09T17:02:12,487 to the `packages` configuration field. 2025-12-09T17:02:12,489 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,489 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,490 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,491 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,492 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,493 If you don't want 'multiqc.modules.ngsbits' to be distributed and are 2025-12-09T17:02:12,494 already explicitly excluding 'multiqc.modules.ngsbits' via 2025-12-09T17:02:12,495 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,495 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,496 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,497 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,498 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,499 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,500 even if it does not contain any `.py` files. 2025-12-09T17:02:12,500 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,501 directory, all directories are treated like packages. 2025-12-09T17:02:12,501 ******************************************************************************** 2025-12-09T17:02:12,502 !! 2025-12-09T17:02:12,503 check.warn(importable) 2025-12-09T17:02:12,503 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ngsderive' is absent from the `packages` configuration. 2025-12-09T17:02:12,504 !! 2025-12-09T17:02:12,505 ******************************************************************************** 2025-12-09T17:02:12,505 ############################ 2025-12-09T17:02:12,506 # Package would be ignored # 2025-12-09T17:02:12,506 ############################ 2025-12-09T17:02:12,507 Python recognizes 'multiqc.modules.ngsderive' as an importable package[^1], 2025-12-09T17:02:12,507 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,508 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,509 package, please make sure that 'multiqc.modules.ngsderive' is explicitly added 2025-12-09T17:02:12,509 to the `packages` configuration field. 2025-12-09T17:02:12,511 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,511 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,512 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,513 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,514 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,516 If you don't want 'multiqc.modules.ngsderive' to be distributed and are 2025-12-09T17:02:12,516 already explicitly excluding 'multiqc.modules.ngsderive' via 2025-12-09T17:02:12,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,518 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,519 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,523 even if it does not contain any `.py` files. 2025-12-09T17:02:12,523 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,524 directory, all directories are treated like packages. 2025-12-09T17:02:12,524 ******************************************************************************** 2025-12-09T17:02:12,526 !! 2025-12-09T17:02:12,526 check.warn(importable) 2025-12-09T17:02:12,527 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.nonpareil' is absent from the `packages` configuration. 2025-12-09T17:02:12,528 !! 2025-12-09T17:02:12,529 ******************************************************************************** 2025-12-09T17:02:12,529 ############################ 2025-12-09T17:02:12,530 # Package would be ignored # 2025-12-09T17:02:12,530 ############################ 2025-12-09T17:02:12,531 Python recognizes 'multiqc.modules.nonpareil' as an importable package[^1], 2025-12-09T17:02:12,531 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,532 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,533 package, please make sure that 'multiqc.modules.nonpareil' is explicitly added 2025-12-09T17:02:12,533 to the `packages` configuration field. 2025-12-09T17:02:12,534 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,535 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,535 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,536 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,537 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,538 If you don't want 'multiqc.modules.nonpareil' to be distributed and are 2025-12-09T17:02:12,539 already explicitly excluding 'multiqc.modules.nonpareil' via 2025-12-09T17:02:12,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,540 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,541 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,545 even if it does not contain any `.py` files. 2025-12-09T17:02:12,545 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,546 directory, all directories are treated like packages. 2025-12-09T17:02:12,547 ******************************************************************************** 2025-12-09T17:02:12,548 !! 2025-12-09T17:02:12,549 check.warn(importable) 2025-12-09T17:02:12,549 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.odgi' is absent from the `packages` configuration. 2025-12-09T17:02:12,550 !! 2025-12-09T17:02:12,551 ******************************************************************************** 2025-12-09T17:02:12,552 ############################ 2025-12-09T17:02:12,552 # Package would be ignored # 2025-12-09T17:02:12,553 ############################ 2025-12-09T17:02:12,554 Python recognizes 'multiqc.modules.odgi' as an importable package[^1], 2025-12-09T17:02:12,554 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,555 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,556 package, please make sure that 'multiqc.modules.odgi' is explicitly added 2025-12-09T17:02:12,557 to the `packages` configuration field. 2025-12-09T17:02:12,558 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,558 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,559 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,561 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,563 If you don't want 'multiqc.modules.odgi' to be distributed and are 2025-12-09T17:02:12,564 already explicitly excluding 'multiqc.modules.odgi' via 2025-12-09T17:02:12,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,565 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,565 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,566 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,568 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,569 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,569 even if it does not contain any `.py` files. 2025-12-09T17:02:12,570 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,570 directory, all directories are treated like packages. 2025-12-09T17:02:12,571 ******************************************************************************** 2025-12-09T17:02:12,572 !! 2025-12-09T17:02:12,572 check.warn(importable) 2025-12-09T17:02:12,573 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.optitype' is absent from the `packages` configuration. 2025-12-09T17:02:12,573 !! 2025-12-09T17:02:12,574 ******************************************************************************** 2025-12-09T17:02:12,575 ############################ 2025-12-09T17:02:12,575 # Package would be ignored # 2025-12-09T17:02:12,576 ############################ 2025-12-09T17:02:12,576 Python recognizes 'multiqc.modules.optitype' as an importable package[^1], 2025-12-09T17:02:12,577 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,578 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,578 package, please make sure that 'multiqc.modules.optitype' is explicitly added 2025-12-09T17:02:12,579 to the `packages` configuration field. 2025-12-09T17:02:12,580 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,581 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,582 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,583 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,584 If you don't want 'multiqc.modules.optitype' to be distributed and are 2025-12-09T17:02:12,585 already explicitly excluding 'multiqc.modules.optitype' via 2025-12-09T17:02:12,585 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,586 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,586 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,587 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,589 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,591 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,591 even if it does not contain any `.py` files. 2025-12-09T17:02:12,592 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,593 directory, all directories are treated like packages. 2025-12-09T17:02:12,593 ******************************************************************************** 2025-12-09T17:02:12,595 !! 2025-12-09T17:02:12,595 check.warn(importable) 2025-12-09T17:02:12,596 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.pairtools' is absent from the `packages` configuration. 2025-12-09T17:02:12,596 !! 2025-12-09T17:02:12,597 ******************************************************************************** 2025-12-09T17:02:12,598 ############################ 2025-12-09T17:02:12,598 # Package would be ignored # 2025-12-09T17:02:12,599 ############################ 2025-12-09T17:02:12,599 Python recognizes 'multiqc.modules.pairtools' as an importable package[^1], 2025-12-09T17:02:12,600 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,601 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,601 package, please make sure that 'multiqc.modules.pairtools' is explicitly added 2025-12-09T17:02:12,602 to the `packages` configuration field. 2025-12-09T17:02:12,603 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,603 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,604 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,605 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,606 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,607 If you don't want 'multiqc.modules.pairtools' to be distributed and are 2025-12-09T17:02:12,608 already explicitly excluding 'multiqc.modules.pairtools' via 2025-12-09T17:02:12,608 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,609 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,609 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,610 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,612 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,614 even if it does not contain any `.py` files. 2025-12-09T17:02:12,615 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,615 directory, all directories are treated like packages. 2025-12-09T17:02:12,616 ******************************************************************************** 2025-12-09T17:02:12,617 !! 2025-12-09T17:02:12,618 check.warn(importable) 2025-12-09T17:02:12,618 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.pangolin' is absent from the `packages` configuration. 2025-12-09T17:02:12,619 !! 2025-12-09T17:02:12,620 ******************************************************************************** 2025-12-09T17:02:12,620 ############################ 2025-12-09T17:02:12,621 # Package would be ignored # 2025-12-09T17:02:12,622 ############################ 2025-12-09T17:02:12,622 Python recognizes 'multiqc.modules.pangolin' as an importable package[^1], 2025-12-09T17:02:12,623 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,624 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,625 package, please make sure that 'multiqc.modules.pangolin' is explicitly added 2025-12-09T17:02:12,625 to the `packages` configuration field. 2025-12-09T17:02:12,627 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,627 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,628 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,629 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,630 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,631 If you don't want 'multiqc.modules.pangolin' to be distributed and are 2025-12-09T17:02:12,631 already explicitly excluding 'multiqc.modules.pangolin' via 2025-12-09T17:02:12,632 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,632 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,632 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,633 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,634 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,636 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,636 even if it does not contain any `.py` files. 2025-12-09T17:02:12,637 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,637 directory, all directories are treated like packages. 2025-12-09T17:02:12,638 ******************************************************************************** 2025-12-09T17:02:12,639 !! 2025-12-09T17:02:12,640 check.warn(importable) 2025-12-09T17:02:12,640 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.pbmarkdup' is absent from the `packages` configuration. 2025-12-09T17:02:12,641 !! 2025-12-09T17:02:12,642 ******************************************************************************** 2025-12-09T17:02:12,643 ############################ 2025-12-09T17:02:12,643 # Package would be ignored # 2025-12-09T17:02:12,644 ############################ 2025-12-09T17:02:12,645 Python recognizes 'multiqc.modules.pbmarkdup' as an importable package[^1], 2025-12-09T17:02:12,645 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,647 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,647 package, please make sure that 'multiqc.modules.pbmarkdup' is explicitly added 2025-12-09T17:02:12,648 to the `packages` configuration field. 2025-12-09T17:02:12,649 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,650 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,652 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,653 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,654 If you don't want 'multiqc.modules.pbmarkdup' to be distributed and are 2025-12-09T17:02:12,655 already explicitly excluding 'multiqc.modules.pbmarkdup' via 2025-12-09T17:02:12,655 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,656 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,657 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,658 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,660 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,661 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,661 even if it does not contain any `.py` files. 2025-12-09T17:02:12,662 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,662 directory, all directories are treated like packages. 2025-12-09T17:02:12,663 ******************************************************************************** 2025-12-09T17:02:12,664 !! 2025-12-09T17:02:12,664 check.warn(importable) 2025-12-09T17:02:12,665 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.peddy' is absent from the `packages` configuration. 2025-12-09T17:02:12,665 !! 2025-12-09T17:02:12,666 ******************************************************************************** 2025-12-09T17:02:12,666 ############################ 2025-12-09T17:02:12,667 # Package would be ignored # 2025-12-09T17:02:12,667 ############################ 2025-12-09T17:02:12,668 Python recognizes 'multiqc.modules.peddy' as an importable package[^1], 2025-12-09T17:02:12,668 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,669 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,670 package, please make sure that 'multiqc.modules.peddy' is explicitly added 2025-12-09T17:02:12,670 to the `packages` configuration field. 2025-12-09T17:02:12,672 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,673 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,674 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,676 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,677 If you don't want 'multiqc.modules.peddy' to be distributed and are 2025-12-09T17:02:12,678 already explicitly excluding 'multiqc.modules.peddy' via 2025-12-09T17:02:12,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,680 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,681 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,682 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,684 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,685 even if it does not contain any `.py` files. 2025-12-09T17:02:12,685 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,686 directory, all directories are treated like packages. 2025-12-09T17:02:12,687 ******************************************************************************** 2025-12-09T17:02:12,688 !! 2025-12-09T17:02:12,688 check.warn(importable) 2025-12-09T17:02:12,689 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.percolator' is absent from the `packages` configuration. 2025-12-09T17:02:12,690 !! 2025-12-09T17:02:12,691 ******************************************************************************** 2025-12-09T17:02:12,692 ############################ 2025-12-09T17:02:12,692 # Package would be ignored # 2025-12-09T17:02:12,693 ############################ 2025-12-09T17:02:12,694 Python recognizes 'multiqc.modules.percolator' as an importable package[^1], 2025-12-09T17:02:12,694 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,695 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,696 package, please make sure that 'multiqc.modules.percolator' is explicitly added 2025-12-09T17:02:12,696 to the `packages` configuration field. 2025-12-09T17:02:12,697 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,698 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,699 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,700 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,701 If you don't want 'multiqc.modules.percolator' to be distributed and are 2025-12-09T17:02:12,701 already explicitly excluding 'multiqc.modules.percolator' via 2025-12-09T17:02:12,702 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,702 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,703 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,704 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,707 even if it does not contain any `.py` files. 2025-12-09T17:02:12,708 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,708 directory, all directories are treated like packages. 2025-12-09T17:02:12,709 ******************************************************************************** 2025-12-09T17:02:12,710 !! 2025-12-09T17:02:12,711 check.warn(importable) 2025-12-09T17:02:12,712 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.phantompeakqualtools' is absent from the `packages` configuration. 2025-12-09T17:02:12,712 !! 2025-12-09T17:02:12,713 ******************************************************************************** 2025-12-09T17:02:12,714 ############################ 2025-12-09T17:02:12,715 # Package would be ignored # 2025-12-09T17:02:12,715 ############################ 2025-12-09T17:02:12,716 Python recognizes 'multiqc.modules.phantompeakqualtools' as an importable package[^1], 2025-12-09T17:02:12,716 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,718 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,718 package, please make sure that 'multiqc.modules.phantompeakqualtools' is explicitly added 2025-12-09T17:02:12,719 to the `packages` configuration field. 2025-12-09T17:02:12,720 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,720 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,721 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,722 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,725 If you don't want 'multiqc.modules.phantompeakqualtools' to be distributed and are 2025-12-09T17:02:12,726 already explicitly excluding 'multiqc.modules.phantompeakqualtools' via 2025-12-09T17:02:12,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,728 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,728 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,729 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,731 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,731 even if it does not contain any `.py` files. 2025-12-09T17:02:12,732 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,732 directory, all directories are treated like packages. 2025-12-09T17:02:12,733 ******************************************************************************** 2025-12-09T17:02:12,734 !! 2025-12-09T17:02:12,734 check.warn(importable) 2025-12-09T17:02:12,735 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.picard' is absent from the `packages` configuration. 2025-12-09T17:02:12,735 !! 2025-12-09T17:02:12,736 ******************************************************************************** 2025-12-09T17:02:12,736 ############################ 2025-12-09T17:02:12,737 # Package would be ignored # 2025-12-09T17:02:12,737 ############################ 2025-12-09T17:02:12,738 Python recognizes 'multiqc.modules.picard' as an importable package[^1], 2025-12-09T17:02:12,738 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,740 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,741 package, please make sure that 'multiqc.modules.picard' is explicitly added 2025-12-09T17:02:12,741 to the `packages` configuration field. 2025-12-09T17:02:12,743 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,744 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,745 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,746 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,748 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,749 If you don't want 'multiqc.modules.picard' to be distributed and are 2025-12-09T17:02:12,750 already explicitly excluding 'multiqc.modules.picard' via 2025-12-09T17:02:12,750 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,751 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,751 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,753 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,754 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,756 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,756 even if it does not contain any `.py` files. 2025-12-09T17:02:12,757 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,757 directory, all directories are treated like packages. 2025-12-09T17:02:12,758 ******************************************************************************** 2025-12-09T17:02:12,759 !! 2025-12-09T17:02:12,760 check.warn(importable) 2025-12-09T17:02:12,761 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.picard.tests' is absent from the `packages` configuration. 2025-12-09T17:02:12,761 !! 2025-12-09T17:02:12,762 ******************************************************************************** 2025-12-09T17:02:12,763 ############################ 2025-12-09T17:02:12,763 # Package would be ignored # 2025-12-09T17:02:12,764 ############################ 2025-12-09T17:02:12,764 Python recognizes 'multiqc.modules.picard.tests' as an importable package[^1], 2025-12-09T17:02:12,765 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,765 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,766 package, please make sure that 'multiqc.modules.picard.tests' is explicitly added 2025-12-09T17:02:12,766 to the `packages` configuration field. 2025-12-09T17:02:12,767 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,768 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,768 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,769 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,771 If you don't want 'multiqc.modules.picard.tests' to be distributed and are 2025-12-09T17:02:12,772 already explicitly excluding 'multiqc.modules.picard.tests' via 2025-12-09T17:02:12,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,773 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,773 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,775 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,776 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,777 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,778 even if it does not contain any `.py` files. 2025-12-09T17:02:12,779 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,779 directory, all directories are treated like packages. 2025-12-09T17:02:12,780 ******************************************************************************** 2025-12-09T17:02:12,781 !! 2025-12-09T17:02:12,781 check.warn(importable) 2025-12-09T17:02:12,782 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.porechop' is absent from the `packages` configuration. 2025-12-09T17:02:12,783 !! 2025-12-09T17:02:12,784 ******************************************************************************** 2025-12-09T17:02:12,784 ############################ 2025-12-09T17:02:12,785 # Package would be ignored # 2025-12-09T17:02:12,785 ############################ 2025-12-09T17:02:12,786 Python recognizes 'multiqc.modules.porechop' as an importable package[^1], 2025-12-09T17:02:12,787 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,788 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,788 package, please make sure that 'multiqc.modules.porechop' is explicitly added 2025-12-09T17:02:12,789 to the `packages` configuration field. 2025-12-09T17:02:12,790 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,792 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,793 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,794 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,795 If you don't want 'multiqc.modules.porechop' to be distributed and are 2025-12-09T17:02:12,795 already explicitly excluding 'multiqc.modules.porechop' via 2025-12-09T17:02:12,795 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,796 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,796 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,797 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,798 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,800 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,800 even if it does not contain any `.py` files. 2025-12-09T17:02:12,801 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,801 directory, all directories are treated like packages. 2025-12-09T17:02:12,802 ******************************************************************************** 2025-12-09T17:02:12,802 !! 2025-12-09T17:02:12,803 check.warn(importable) 2025-12-09T17:02:12,804 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.preseq' is absent from the `packages` configuration. 2025-12-09T17:02:12,804 !! 2025-12-09T17:02:12,805 ******************************************************************************** 2025-12-09T17:02:12,806 ############################ 2025-12-09T17:02:12,806 # Package would be ignored # 2025-12-09T17:02:12,807 ############################ 2025-12-09T17:02:12,808 Python recognizes 'multiqc.modules.preseq' as an importable package[^1], 2025-12-09T17:02:12,808 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,809 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,810 package, please make sure that 'multiqc.modules.preseq' is explicitly added 2025-12-09T17:02:12,810 to the `packages` configuration field. 2025-12-09T17:02:12,812 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,812 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,813 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,814 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,815 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,816 If you don't want 'multiqc.modules.preseq' to be distributed and are 2025-12-09T17:02:12,817 already explicitly excluding 'multiqc.modules.preseq' via 2025-12-09T17:02:12,817 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,818 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,818 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,820 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,821 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,823 even if it does not contain any `.py` files. 2025-12-09T17:02:12,824 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,825 directory, all directories are treated like packages. 2025-12-09T17:02:12,825 ******************************************************************************** 2025-12-09T17:02:12,826 !! 2025-12-09T17:02:12,826 check.warn(importable) 2025-12-09T17:02:12,827 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.prinseqplusplus' is absent from the `packages` configuration. 2025-12-09T17:02:12,827 !! 2025-12-09T17:02:12,828 ******************************************************************************** 2025-12-09T17:02:12,829 ############################ 2025-12-09T17:02:12,829 # Package would be ignored # 2025-12-09T17:02:12,830 ############################ 2025-12-09T17:02:12,830 Python recognizes 'multiqc.modules.prinseqplusplus' as an importable package[^1], 2025-12-09T17:02:12,831 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,832 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,832 package, please make sure that 'multiqc.modules.prinseqplusplus' is explicitly added 2025-12-09T17:02:12,833 to the `packages` configuration field. 2025-12-09T17:02:12,834 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,835 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,836 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,839 If you don't want 'multiqc.modules.prinseqplusplus' to be distributed and are 2025-12-09T17:02:12,839 already explicitly excluding 'multiqc.modules.prinseqplusplus' via 2025-12-09T17:02:12,840 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,841 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,842 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,844 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,846 even if it does not contain any `.py` files. 2025-12-09T17:02:12,846 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,847 directory, all directories are treated like packages. 2025-12-09T17:02:12,848 ******************************************************************************** 2025-12-09T17:02:12,849 !! 2025-12-09T17:02:12,849 check.warn(importable) 2025-12-09T17:02:12,850 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.prokka' is absent from the `packages` configuration. 2025-12-09T17:02:12,850 !! 2025-12-09T17:02:12,852 ******************************************************************************** 2025-12-09T17:02:12,852 ############################ 2025-12-09T17:02:12,853 # Package would be ignored # 2025-12-09T17:02:12,854 ############################ 2025-12-09T17:02:12,854 Python recognizes 'multiqc.modules.prokka' as an importable package[^1], 2025-12-09T17:02:12,855 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,856 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,857 package, please make sure that 'multiqc.modules.prokka' is explicitly added 2025-12-09T17:02:12,857 to the `packages` configuration field. 2025-12-09T17:02:12,858 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,859 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,859 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,860 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,861 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,862 If you don't want 'multiqc.modules.prokka' to be distributed and are 2025-12-09T17:02:12,862 already explicitly excluding 'multiqc.modules.prokka' via 2025-12-09T17:02:12,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,863 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,864 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,865 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,866 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,867 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,868 even if it does not contain any `.py` files. 2025-12-09T17:02:12,868 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,869 directory, all directories are treated like packages. 2025-12-09T17:02:12,870 ******************************************************************************** 2025-12-09T17:02:12,871 !! 2025-12-09T17:02:12,872 check.warn(importable) 2025-12-09T17:02:12,872 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.purple' is absent from the `packages` configuration. 2025-12-09T17:02:12,873 !! 2025-12-09T17:02:12,874 ******************************************************************************** 2025-12-09T17:02:12,875 ############################ 2025-12-09T17:02:12,875 # Package would be ignored # 2025-12-09T17:02:12,876 ############################ 2025-12-09T17:02:12,877 Python recognizes 'multiqc.modules.purple' as an importable package[^1], 2025-12-09T17:02:12,877 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,878 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,879 package, please make sure that 'multiqc.modules.purple' is explicitly added 2025-12-09T17:02:12,880 to the `packages` configuration field. 2025-12-09T17:02:12,881 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,881 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,882 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,883 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,884 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,886 If you don't want 'multiqc.modules.purple' to be distributed and are 2025-12-09T17:02:12,886 already explicitly excluding 'multiqc.modules.purple' via 2025-12-09T17:02:12,887 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,888 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,889 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,890 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,891 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,892 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,892 even if it does not contain any `.py` files. 2025-12-09T17:02:12,893 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,893 directory, all directories are treated like packages. 2025-12-09T17:02:12,894 ******************************************************************************** 2025-12-09T17:02:12,894 !! 2025-12-09T17:02:12,895 check.warn(importable) 2025-12-09T17:02:12,895 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.pychopper' is absent from the `packages` configuration. 2025-12-09T17:02:12,896 !! 2025-12-09T17:02:12,897 ******************************************************************************** 2025-12-09T17:02:12,897 ############################ 2025-12-09T17:02:12,898 # Package would be ignored # 2025-12-09T17:02:12,898 ############################ 2025-12-09T17:02:12,899 Python recognizes 'multiqc.modules.pychopper' as an importable package[^1], 2025-12-09T17:02:12,899 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,900 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,901 package, please make sure that 'multiqc.modules.pychopper' is explicitly added 2025-12-09T17:02:12,901 to the `packages` configuration field. 2025-12-09T17:02:12,903 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,903 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,904 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,905 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,906 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,908 If you don't want 'multiqc.modules.pychopper' to be distributed and are 2025-12-09T17:02:12,908 already explicitly excluding 'multiqc.modules.pychopper' via 2025-12-09T17:02:12,909 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,910 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,910 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,911 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,914 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,915 even if it does not contain any `.py` files. 2025-12-09T17:02:12,915 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,916 directory, all directories are treated like packages. 2025-12-09T17:02:12,916 ******************************************************************************** 2025-12-09T17:02:12,917 !! 2025-12-09T17:02:12,918 check.warn(importable) 2025-12-09T17:02:12,919 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.pycoqc' is absent from the `packages` configuration. 2025-12-09T17:02:12,919 !! 2025-12-09T17:02:12,921 ******************************************************************************** 2025-12-09T17:02:12,921 ############################ 2025-12-09T17:02:12,922 # Package would be ignored # 2025-12-09T17:02:12,922 ############################ 2025-12-09T17:02:12,923 Python recognizes 'multiqc.modules.pycoqc' as an importable package[^1], 2025-12-09T17:02:12,924 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,925 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,925 package, please make sure that 'multiqc.modules.pycoqc' is explicitly added 2025-12-09T17:02:12,925 to the `packages` configuration field. 2025-12-09T17:02:12,926 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,927 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,927 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,928 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,929 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,930 If you don't want 'multiqc.modules.pycoqc' to be distributed and are 2025-12-09T17:02:12,931 already explicitly excluding 'multiqc.modules.pycoqc' via 2025-12-09T17:02:12,931 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,932 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,933 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,934 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,935 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,937 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,937 even if it does not contain any `.py` files. 2025-12-09T17:02:12,938 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,938 directory, all directories are treated like packages. 2025-12-09T17:02:12,939 ******************************************************************************** 2025-12-09T17:02:12,941 !! 2025-12-09T17:02:12,941 check.warn(importable) 2025-12-09T17:02:12,942 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.qc3C' is absent from the `packages` configuration. 2025-12-09T17:02:12,942 !! 2025-12-09T17:02:12,944 ******************************************************************************** 2025-12-09T17:02:12,944 ############################ 2025-12-09T17:02:12,945 # Package would be ignored # 2025-12-09T17:02:12,945 ############################ 2025-12-09T17:02:12,946 Python recognizes 'multiqc.modules.qc3C' as an importable package[^1], 2025-12-09T17:02:12,947 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,948 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,949 package, please make sure that 'multiqc.modules.qc3C' is explicitly added 2025-12-09T17:02:12,949 to the `packages` configuration field. 2025-12-09T17:02:12,951 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,951 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,952 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,953 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,955 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,956 If you don't want 'multiqc.modules.qc3C' to be distributed and are 2025-12-09T17:02:12,956 already explicitly excluding 'multiqc.modules.qc3C' via 2025-12-09T17:02:12,956 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,957 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,957 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,958 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,959 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,961 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,961 even if it does not contain any `.py` files. 2025-12-09T17:02:12,962 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,962 directory, all directories are treated like packages. 2025-12-09T17:02:12,963 ******************************************************************************** 2025-12-09T17:02:12,964 !! 2025-12-09T17:02:12,964 check.warn(importable) 2025-12-09T17:02:12,964 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.qorts' is absent from the `packages` configuration. 2025-12-09T17:02:12,965 !! 2025-12-09T17:02:12,966 ******************************************************************************** 2025-12-09T17:02:12,967 ############################ 2025-12-09T17:02:12,967 # Package would be ignored # 2025-12-09T17:02:12,968 ############################ 2025-12-09T17:02:12,969 Python recognizes 'multiqc.modules.qorts' as an importable package[^1], 2025-12-09T17:02:12,969 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,971 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,971 package, please make sure that 'multiqc.modules.qorts' is explicitly added 2025-12-09T17:02:12,972 to the `packages` configuration field. 2025-12-09T17:02:12,973 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,974 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,975 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,978 If you don't want 'multiqc.modules.qorts' to be distributed and are 2025-12-09T17:02:12,978 already explicitly excluding 'multiqc.modules.qorts' via 2025-12-09T17:02:12,979 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:12,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:12,980 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:12,981 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:12,982 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:12,984 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:12,985 even if it does not contain any `.py` files. 2025-12-09T17:02:12,985 On the other hand, currently there is no concept of package data 2025-12-09T17:02:12,986 directory, all directories are treated like packages. 2025-12-09T17:02:12,987 ******************************************************************************** 2025-12-09T17:02:12,988 !! 2025-12-09T17:02:12,988 check.warn(importable) 2025-12-09T17:02:12,989 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.qualimap' is absent from the `packages` configuration. 2025-12-09T17:02:12,989 !! 2025-12-09T17:02:12,990 ******************************************************************************** 2025-12-09T17:02:12,991 ############################ 2025-12-09T17:02:12,991 # Package would be ignored # 2025-12-09T17:02:12,992 ############################ 2025-12-09T17:02:12,992 Python recognizes 'multiqc.modules.qualimap' as an importable package[^1], 2025-12-09T17:02:12,992 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:12,993 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:12,994 package, please make sure that 'multiqc.modules.qualimap' is explicitly added 2025-12-09T17:02:12,994 to the `packages` configuration field. 2025-12-09T17:02:12,995 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:12,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:12,996 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:12,997 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:12,998 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:12,999 If you don't want 'multiqc.modules.qualimap' to be distributed and are 2025-12-09T17:02:13,000 already explicitly excluding 'multiqc.modules.qualimap' via 2025-12-09T17:02:13,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,001 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,002 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,003 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,007 even if it does not contain any `.py` files. 2025-12-09T17:02:13,008 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,009 directory, all directories are treated like packages. 2025-12-09T17:02:13,009 ******************************************************************************** 2025-12-09T17:02:13,010 !! 2025-12-09T17:02:13,011 check.warn(importable) 2025-12-09T17:02:13,012 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.quast' is absent from the `packages` configuration. 2025-12-09T17:02:13,012 !! 2025-12-09T17:02:13,014 ******************************************************************************** 2025-12-09T17:02:13,014 ############################ 2025-12-09T17:02:13,015 # Package would be ignored # 2025-12-09T17:02:13,015 ############################ 2025-12-09T17:02:13,016 Python recognizes 'multiqc.modules.quast' as an importable package[^1], 2025-12-09T17:02:13,017 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,018 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,018 package, please make sure that 'multiqc.modules.quast' is explicitly added 2025-12-09T17:02:13,019 to the `packages` configuration field. 2025-12-09T17:02:13,021 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,021 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,022 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,023 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,024 If you don't want 'multiqc.modules.quast' to be distributed and are 2025-12-09T17:02:13,024 already explicitly excluding 'multiqc.modules.quast' via 2025-12-09T17:02:13,025 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,025 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,026 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,027 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,028 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,029 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,030 even if it does not contain any `.py` files. 2025-12-09T17:02:13,030 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,031 directory, all directories are treated like packages. 2025-12-09T17:02:13,031 ******************************************************************************** 2025-12-09T17:02:13,032 !! 2025-12-09T17:02:13,033 check.warn(importable) 2025-12-09T17:02:13,033 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ribotish' is absent from the `packages` configuration. 2025-12-09T17:02:13,034 !! 2025-12-09T17:02:13,035 ******************************************************************************** 2025-12-09T17:02:13,036 ############################ 2025-12-09T17:02:13,036 # Package would be ignored # 2025-12-09T17:02:13,037 ############################ 2025-12-09T17:02:13,037 Python recognizes 'multiqc.modules.ribotish' as an importable package[^1], 2025-12-09T17:02:13,038 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,039 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,040 package, please make sure that 'multiqc.modules.ribotish' is explicitly added 2025-12-09T17:02:13,040 to the `packages` configuration field. 2025-12-09T17:02:13,041 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,042 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,042 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,043 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,045 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,046 If you don't want 'multiqc.modules.ribotish' to be distributed and are 2025-12-09T17:02:13,046 already explicitly excluding 'multiqc.modules.ribotish' via 2025-12-09T17:02:13,047 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,047 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,048 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,049 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,051 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,052 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,053 even if it does not contain any `.py` files. 2025-12-09T17:02:13,053 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,053 directory, all directories are treated like packages. 2025-12-09T17:02:13,054 ******************************************************************************** 2025-12-09T17:02:13,055 !! 2025-12-09T17:02:13,055 check.warn(importable) 2025-12-09T17:02:13,056 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.ribotish.tests' is absent from the `packages` configuration. 2025-12-09T17:02:13,056 !! 2025-12-09T17:02:13,057 ******************************************************************************** 2025-12-09T17:02:13,057 ############################ 2025-12-09T17:02:13,058 # Package would be ignored # 2025-12-09T17:02:13,058 ############################ 2025-12-09T17:02:13,059 Python recognizes 'multiqc.modules.ribotish.tests' as an importable package[^1], 2025-12-09T17:02:13,059 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,060 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,061 package, please make sure that 'multiqc.modules.ribotish.tests' is explicitly added 2025-12-09T17:02:13,061 to the `packages` configuration field. 2025-12-09T17:02:13,062 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,063 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,064 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,065 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,067 If you don't want 'multiqc.modules.ribotish.tests' to be distributed and are 2025-12-09T17:02:13,068 already explicitly excluding 'multiqc.modules.ribotish.tests' via 2025-12-09T17:02:13,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,070 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,071 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,072 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,074 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,075 even if it does not contain any `.py` files. 2025-12-09T17:02:13,075 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,076 directory, all directories are treated like packages. 2025-12-09T17:02:13,076 ******************************************************************************** 2025-12-09T17:02:13,077 !! 2025-12-09T17:02:13,078 check.warn(importable) 2025-12-09T17:02:13,078 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.rna_seqc' is absent from the `packages` configuration. 2025-12-09T17:02:13,079 !! 2025-12-09T17:02:13,080 ******************************************************************************** 2025-12-09T17:02:13,081 ############################ 2025-12-09T17:02:13,082 # Package would be ignored # 2025-12-09T17:02:13,082 ############################ 2025-12-09T17:02:13,083 Python recognizes 'multiqc.modules.rna_seqc' as an importable package[^1], 2025-12-09T17:02:13,084 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,085 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,085 package, please make sure that 'multiqc.modules.rna_seqc' is explicitly added 2025-12-09T17:02:13,085 to the `packages` configuration field. 2025-12-09T17:02:13,086 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,087 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,087 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,088 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,089 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,090 If you don't want 'multiqc.modules.rna_seqc' to be distributed and are 2025-12-09T17:02:13,090 already explicitly excluding 'multiqc.modules.rna_seqc' via 2025-12-09T17:02:13,091 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,091 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,092 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,093 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,094 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,096 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,096 even if it does not contain any `.py` files. 2025-12-09T17:02:13,097 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,097 directory, all directories are treated like packages. 2025-12-09T17:02:13,098 ******************************************************************************** 2025-12-09T17:02:13,100 !! 2025-12-09T17:02:13,100 check.warn(importable) 2025-12-09T17:02:13,101 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.rockhopper' is absent from the `packages` configuration. 2025-12-09T17:02:13,102 !! 2025-12-09T17:02:13,103 ******************************************************************************** 2025-12-09T17:02:13,104 ############################ 2025-12-09T17:02:13,104 # Package would be ignored # 2025-12-09T17:02:13,105 ############################ 2025-12-09T17:02:13,105 Python recognizes 'multiqc.modules.rockhopper' as an importable package[^1], 2025-12-09T17:02:13,106 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,107 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,108 package, please make sure that 'multiqc.modules.rockhopper' is explicitly added 2025-12-09T17:02:13,108 to the `packages` configuration field. 2025-12-09T17:02:13,109 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,110 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,110 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,112 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,113 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,114 If you don't want 'multiqc.modules.rockhopper' to be distributed and are 2025-12-09T17:02:13,115 already explicitly excluding 'multiqc.modules.rockhopper' via 2025-12-09T17:02:13,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,116 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,117 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,118 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,119 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,120 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,120 even if it does not contain any `.py` files. 2025-12-09T17:02:13,121 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,121 directory, all directories are treated like packages. 2025-12-09T17:02:13,122 ******************************************************************************** 2025-12-09T17:02:13,123 !! 2025-12-09T17:02:13,123 check.warn(importable) 2025-12-09T17:02:13,123 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.rsem' is absent from the `packages` configuration. 2025-12-09T17:02:13,124 !! 2025-12-09T17:02:13,125 ******************************************************************************** 2025-12-09T17:02:13,125 ############################ 2025-12-09T17:02:13,126 # Package would be ignored # 2025-12-09T17:02:13,126 ############################ 2025-12-09T17:02:13,127 Python recognizes 'multiqc.modules.rsem' as an importable package[^1], 2025-12-09T17:02:13,128 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,129 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,129 package, please make sure that 'multiqc.modules.rsem' is explicitly added 2025-12-09T17:02:13,130 to the `packages` configuration field. 2025-12-09T17:02:13,131 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,133 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,134 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,135 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,137 If you don't want 'multiqc.modules.rsem' to be distributed and are 2025-12-09T17:02:13,137 already explicitly excluding 'multiqc.modules.rsem' via 2025-12-09T17:02:13,138 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,139 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,139 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,140 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,141 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,143 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,144 even if it does not contain any `.py` files. 2025-12-09T17:02:13,144 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,145 directory, all directories are treated like packages. 2025-12-09T17:02:13,145 ******************************************************************************** 2025-12-09T17:02:13,147 !! 2025-12-09T17:02:13,147 check.warn(importable) 2025-12-09T17:02:13,148 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.rseqc' is absent from the `packages` configuration. 2025-12-09T17:02:13,149 !! 2025-12-09T17:02:13,150 ******************************************************************************** 2025-12-09T17:02:13,150 ############################ 2025-12-09T17:02:13,151 # Package would be ignored # 2025-12-09T17:02:13,151 ############################ 2025-12-09T17:02:13,152 Python recognizes 'multiqc.modules.rseqc' as an importable package[^1], 2025-12-09T17:02:13,152 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,153 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,154 package, please make sure that 'multiqc.modules.rseqc' is explicitly added 2025-12-09T17:02:13,154 to the `packages` configuration field. 2025-12-09T17:02:13,155 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,156 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,157 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,158 If you don't want 'multiqc.modules.rseqc' to be distributed and are 2025-12-09T17:02:13,159 already explicitly excluding 'multiqc.modules.rseqc' via 2025-12-09T17:02:13,159 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,160 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,162 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,165 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,166 even if it does not contain any `.py` files. 2025-12-09T17:02:13,166 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,167 directory, all directories are treated like packages. 2025-12-09T17:02:13,168 ******************************************************************************** 2025-12-09T17:02:13,169 !! 2025-12-09T17:02:13,170 check.warn(importable) 2025-12-09T17:02:13,171 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.salmon' is absent from the `packages` configuration. 2025-12-09T17:02:13,171 !! 2025-12-09T17:02:13,172 ******************************************************************************** 2025-12-09T17:02:13,173 ############################ 2025-12-09T17:02:13,173 # Package would be ignored # 2025-12-09T17:02:13,174 ############################ 2025-12-09T17:02:13,174 Python recognizes 'multiqc.modules.salmon' as an importable package[^1], 2025-12-09T17:02:13,175 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,176 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,177 package, please make sure that 'multiqc.modules.salmon' is explicitly added 2025-12-09T17:02:13,178 to the `packages` configuration field. 2025-12-09T17:02:13,179 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,180 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,180 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,182 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,183 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,184 If you don't want 'multiqc.modules.salmon' to be distributed and are 2025-12-09T17:02:13,184 already explicitly excluding 'multiqc.modules.salmon' via 2025-12-09T17:02:13,185 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,185 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,185 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,186 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,187 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,189 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,191 even if it does not contain any `.py` files. 2025-12-09T17:02:13,191 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,192 directory, all directories are treated like packages. 2025-12-09T17:02:13,192 ******************************************************************************** 2025-12-09T17:02:13,193 !! 2025-12-09T17:02:13,194 check.warn(importable) 2025-12-09T17:02:13,194 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sambamba' is absent from the `packages` configuration. 2025-12-09T17:02:13,195 !! 2025-12-09T17:02:13,196 ******************************************************************************** 2025-12-09T17:02:13,197 ############################ 2025-12-09T17:02:13,197 # Package would be ignored # 2025-12-09T17:02:13,198 ############################ 2025-12-09T17:02:13,198 Python recognizes 'multiqc.modules.sambamba' as an importable package[^1], 2025-12-09T17:02:13,199 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,200 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,201 package, please make sure that 'multiqc.modules.sambamba' is explicitly added 2025-12-09T17:02:13,202 to the `packages` configuration field. 2025-12-09T17:02:13,203 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,204 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,204 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,206 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,207 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,208 If you don't want 'multiqc.modules.sambamba' to be distributed and are 2025-12-09T17:02:13,208 already explicitly excluding 'multiqc.modules.sambamba' via 2025-12-09T17:02:13,209 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,210 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,210 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,211 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,213 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,215 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,215 even if it does not contain any `.py` files. 2025-12-09T17:02:13,216 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,217 directory, all directories are treated like packages. 2025-12-09T17:02:13,217 ******************************************************************************** 2025-12-09T17:02:13,218 !! 2025-12-09T17:02:13,219 check.warn(importable) 2025-12-09T17:02:13,219 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.samblaster' is absent from the `packages` configuration. 2025-12-09T17:02:13,220 !! 2025-12-09T17:02:13,221 ******************************************************************************** 2025-12-09T17:02:13,221 ############################ 2025-12-09T17:02:13,222 # Package would be ignored # 2025-12-09T17:02:13,222 ############################ 2025-12-09T17:02:13,222 Python recognizes 'multiqc.modules.samblaster' as an importable package[^1], 2025-12-09T17:02:13,223 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,224 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,224 package, please make sure that 'multiqc.modules.samblaster' is explicitly added 2025-12-09T17:02:13,225 to the `packages` configuration field. 2025-12-09T17:02:13,226 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,226 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,227 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,228 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,230 If you don't want 'multiqc.modules.samblaster' to be distributed and are 2025-12-09T17:02:13,231 already explicitly excluding 'multiqc.modules.samblaster' via 2025-12-09T17:02:13,231 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,232 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,233 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,234 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,237 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,238 even if it does not contain any `.py` files. 2025-12-09T17:02:13,239 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,239 directory, all directories are treated like packages. 2025-12-09T17:02:13,240 ******************************************************************************** 2025-12-09T17:02:13,241 !! 2025-12-09T17:02:13,242 check.warn(importable) 2025-12-09T17:02:13,242 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.samtools' is absent from the `packages` configuration. 2025-12-09T17:02:13,243 !! 2025-12-09T17:02:13,244 ******************************************************************************** 2025-12-09T17:02:13,245 ############################ 2025-12-09T17:02:13,245 # Package would be ignored # 2025-12-09T17:02:13,246 ############################ 2025-12-09T17:02:13,246 Python recognizes 'multiqc.modules.samtools' as an importable package[^1], 2025-12-09T17:02:13,247 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,248 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,249 package, please make sure that 'multiqc.modules.samtools' is explicitly added 2025-12-09T17:02:13,250 to the `packages` configuration field. 2025-12-09T17:02:13,251 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,251 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,252 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,253 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,255 If you don't want 'multiqc.modules.samtools' to be distributed and are 2025-12-09T17:02:13,255 already explicitly excluding 'multiqc.modules.samtools' via 2025-12-09T17:02:13,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,256 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,257 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,257 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,258 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,260 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,260 even if it does not contain any `.py` files. 2025-12-09T17:02:13,261 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,261 directory, all directories are treated like packages. 2025-12-09T17:02:13,262 ******************************************************************************** 2025-12-09T17:02:13,263 !! 2025-12-09T17:02:13,264 check.warn(importable) 2025-12-09T17:02:13,264 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.samtools.tests' is absent from the `packages` configuration. 2025-12-09T17:02:13,265 !! 2025-12-09T17:02:13,266 ******************************************************************************** 2025-12-09T17:02:13,267 ############################ 2025-12-09T17:02:13,267 # Package would be ignored # 2025-12-09T17:02:13,268 ############################ 2025-12-09T17:02:13,268 Python recognizes 'multiqc.modules.samtools.tests' as an importable package[^1], 2025-12-09T17:02:13,269 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,270 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,270 package, please make sure that 'multiqc.modules.samtools.tests' is explicitly added 2025-12-09T17:02:13,271 to the `packages` configuration field. 2025-12-09T17:02:13,272 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,274 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,275 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,276 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,277 If you don't want 'multiqc.modules.samtools.tests' to be distributed and are 2025-12-09T17:02:13,278 already explicitly excluding 'multiqc.modules.samtools.tests' via 2025-12-09T17:02:13,279 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,279 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,280 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,281 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,282 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,284 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,284 even if it does not contain any `.py` files. 2025-12-09T17:02:13,285 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,285 directory, all directories are treated like packages. 2025-12-09T17:02:13,286 ******************************************************************************** 2025-12-09T17:02:13,287 !! 2025-12-09T17:02:13,287 check.warn(importable) 2025-12-09T17:02:13,287 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sargasso' is absent from the `packages` configuration. 2025-12-09T17:02:13,288 !! 2025-12-09T17:02:13,289 ******************************************************************************** 2025-12-09T17:02:13,289 ############################ 2025-12-09T17:02:13,290 # Package would be ignored # 2025-12-09T17:02:13,290 ############################ 2025-12-09T17:02:13,291 Python recognizes 'multiqc.modules.sargasso' as an importable package[^1], 2025-12-09T17:02:13,291 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,292 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,293 package, please make sure that 'multiqc.modules.sargasso' is explicitly added 2025-12-09T17:02:13,294 to the `packages` configuration field. 2025-12-09T17:02:13,295 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,296 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,296 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,298 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,300 If you don't want 'multiqc.modules.sargasso' to be distributed and are 2025-12-09T17:02:13,301 already explicitly excluding 'multiqc.modules.sargasso' via 2025-12-09T17:02:13,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,302 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,303 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,304 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,307 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,308 even if it does not contain any `.py` files. 2025-12-09T17:02:13,308 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,309 directory, all directories are treated like packages. 2025-12-09T17:02:13,309 ******************************************************************************** 2025-12-09T17:02:13,311 !! 2025-12-09T17:02:13,311 check.warn(importable) 2025-12-09T17:02:13,312 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.seqera_cli' is absent from the `packages` configuration. 2025-12-09T17:02:13,313 !! 2025-12-09T17:02:13,314 ******************************************************************************** 2025-12-09T17:02:13,315 ############################ 2025-12-09T17:02:13,316 # Package would be ignored # 2025-12-09T17:02:13,316 ############################ 2025-12-09T17:02:13,317 Python recognizes 'multiqc.modules.seqera_cli' as an importable package[^1], 2025-12-09T17:02:13,317 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,318 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,319 package, please make sure that 'multiqc.modules.seqera_cli' is explicitly added 2025-12-09T17:02:13,319 to the `packages` configuration field. 2025-12-09T17:02:13,320 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,321 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,321 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,322 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,323 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,324 If you don't want 'multiqc.modules.seqera_cli' to be distributed and are 2025-12-09T17:02:13,324 already explicitly excluding 'multiqc.modules.seqera_cli' via 2025-12-09T17:02:13,325 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,325 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,326 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,327 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,328 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,330 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,331 even if it does not contain any `.py` files. 2025-12-09T17:02:13,331 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,332 directory, all directories are treated like packages. 2025-12-09T17:02:13,333 ******************************************************************************** 2025-12-09T17:02:13,334 !! 2025-12-09T17:02:13,335 check.warn(importable) 2025-12-09T17:02:13,335 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.seqfu' is absent from the `packages` configuration. 2025-12-09T17:02:13,336 !! 2025-12-09T17:02:13,337 ******************************************************************************** 2025-12-09T17:02:13,338 ############################ 2025-12-09T17:02:13,338 # Package would be ignored # 2025-12-09T17:02:13,339 ############################ 2025-12-09T17:02:13,340 Python recognizes 'multiqc.modules.seqfu' as an importable package[^1], 2025-12-09T17:02:13,340 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,341 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,342 package, please make sure that 'multiqc.modules.seqfu' is explicitly added 2025-12-09T17:02:13,343 to the `packages` configuration field. 2025-12-09T17:02:13,344 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,344 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,345 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,347 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,348 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,349 If you don't want 'multiqc.modules.seqfu' to be distributed and are 2025-12-09T17:02:13,350 already explicitly excluding 'multiqc.modules.seqfu' via 2025-12-09T17:02:13,350 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,351 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,351 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,352 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,353 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,355 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,355 even if it does not contain any `.py` files. 2025-12-09T17:02:13,355 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,356 directory, all directories are treated like packages. 2025-12-09T17:02:13,356 ******************************************************************************** 2025-12-09T17:02:13,357 !! 2025-12-09T17:02:13,358 check.warn(importable) 2025-12-09T17:02:13,358 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.seqfu.test' is absent from the `packages` configuration. 2025-12-09T17:02:13,359 !! 2025-12-09T17:02:13,360 ******************************************************************************** 2025-12-09T17:02:13,361 ############################ 2025-12-09T17:02:13,361 # Package would be ignored # 2025-12-09T17:02:13,362 ############################ 2025-12-09T17:02:13,362 Python recognizes 'multiqc.modules.seqfu.test' as an importable package[^1], 2025-12-09T17:02:13,363 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,364 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,364 package, please make sure that 'multiqc.modules.seqfu.test' is explicitly added 2025-12-09T17:02:13,365 to the `packages` configuration field. 2025-12-09T17:02:13,366 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,368 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,369 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,370 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,371 If you don't want 'multiqc.modules.seqfu.test' to be distributed and are 2025-12-09T17:02:13,372 already explicitly excluding 'multiqc.modules.seqfu.test' via 2025-12-09T17:02:13,373 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,373 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,374 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,375 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,377 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,379 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,379 even if it does not contain any `.py` files. 2025-12-09T17:02:13,380 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,380 directory, all directories are treated like packages. 2025-12-09T17:02:13,381 ******************************************************************************** 2025-12-09T17:02:13,383 !! 2025-12-09T17:02:13,383 check.warn(importable) 2025-12-09T17:02:13,384 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.seqkit' is absent from the `packages` configuration. 2025-12-09T17:02:13,384 !! 2025-12-09T17:02:13,385 ******************************************************************************** 2025-12-09T17:02:13,386 ############################ 2025-12-09T17:02:13,386 # Package would be ignored # 2025-12-09T17:02:13,386 ############################ 2025-12-09T17:02:13,387 Python recognizes 'multiqc.modules.seqkit' as an importable package[^1], 2025-12-09T17:02:13,387 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,388 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,389 package, please make sure that 'multiqc.modules.seqkit' is explicitly added 2025-12-09T17:02:13,389 to the `packages` configuration field. 2025-12-09T17:02:13,390 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,391 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,391 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,392 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,393 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,394 If you don't want 'multiqc.modules.seqkit' to be distributed and are 2025-12-09T17:02:13,395 already explicitly excluding 'multiqc.modules.seqkit' via 2025-12-09T17:02:13,396 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,396 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,397 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,398 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,399 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,401 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,402 even if it does not contain any `.py` files. 2025-12-09T17:02:13,402 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,403 directory, all directories are treated like packages. 2025-12-09T17:02:13,404 ******************************************************************************** 2025-12-09T17:02:13,405 !! 2025-12-09T17:02:13,406 check.warn(importable) 2025-12-09T17:02:13,406 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.seqkit.tests' is absent from the `packages` configuration. 2025-12-09T17:02:13,407 !! 2025-12-09T17:02:13,408 ******************************************************************************** 2025-12-09T17:02:13,408 ############################ 2025-12-09T17:02:13,409 # Package would be ignored # 2025-12-09T17:02:13,410 ############################ 2025-12-09T17:02:13,410 Python recognizes 'multiqc.modules.seqkit.tests' as an importable package[^1], 2025-12-09T17:02:13,411 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,412 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,413 package, please make sure that 'multiqc.modules.seqkit.tests' is explicitly added 2025-12-09T17:02:13,413 to the `packages` configuration field. 2025-12-09T17:02:13,415 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,415 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,416 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,416 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,417 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,418 If you don't want 'multiqc.modules.seqkit.tests' to be distributed and are 2025-12-09T17:02:13,419 already explicitly excluding 'multiqc.modules.seqkit.tests' via 2025-12-09T17:02:13,419 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,420 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,420 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,421 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,422 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,423 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,424 even if it does not contain any `.py` files. 2025-12-09T17:02:13,424 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,425 directory, all directories are treated like packages. 2025-12-09T17:02:13,425 ******************************************************************************** 2025-12-09T17:02:13,426 !! 2025-12-09T17:02:13,427 check.warn(importable) 2025-12-09T17:02:13,428 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sequali' is absent from the `packages` configuration. 2025-12-09T17:02:13,428 !! 2025-12-09T17:02:13,429 ******************************************************************************** 2025-12-09T17:02:13,430 ############################ 2025-12-09T17:02:13,431 # Package would be ignored # 2025-12-09T17:02:13,431 ############################ 2025-12-09T17:02:13,432 Python recognizes 'multiqc.modules.sequali' as an importable package[^1], 2025-12-09T17:02:13,433 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,434 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,435 package, please make sure that 'multiqc.modules.sequali' is explicitly added 2025-12-09T17:02:13,435 to the `packages` configuration field. 2025-12-09T17:02:13,437 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,438 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,439 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,440 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,441 If you don't want 'multiqc.modules.sequali' to be distributed and are 2025-12-09T17:02:13,442 already explicitly excluding 'multiqc.modules.sequali' via 2025-12-09T17:02:13,442 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,443 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,443 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,445 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,448 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,448 even if it does not contain any `.py` files. 2025-12-09T17:02:13,449 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,449 directory, all directories are treated like packages. 2025-12-09T17:02:13,450 ******************************************************************************** 2025-12-09T17:02:13,450 !! 2025-12-09T17:02:13,451 check.warn(importable) 2025-12-09T17:02:13,451 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.seqwho' is absent from the `packages` configuration. 2025-12-09T17:02:13,452 !! 2025-12-09T17:02:13,453 ******************************************************************************** 2025-12-09T17:02:13,453 ############################ 2025-12-09T17:02:13,454 # Package would be ignored # 2025-12-09T17:02:13,454 ############################ 2025-12-09T17:02:13,455 Python recognizes 'multiqc.modules.seqwho' as an importable package[^1], 2025-12-09T17:02:13,455 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,456 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,456 package, please make sure that 'multiqc.modules.seqwho' is explicitly added 2025-12-09T17:02:13,457 to the `packages` configuration field. 2025-12-09T17:02:13,458 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,459 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,459 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,461 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,462 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,464 If you don't want 'multiqc.modules.seqwho' to be distributed and are 2025-12-09T17:02:13,465 already explicitly excluding 'multiqc.modules.seqwho' via 2025-12-09T17:02:13,465 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,466 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,467 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,468 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,471 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,472 even if it does not contain any `.py` files. 2025-12-09T17:02:13,472 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,473 directory, all directories are treated like packages. 2025-12-09T17:02:13,474 ******************************************************************************** 2025-12-09T17:02:13,475 !! 2025-12-09T17:02:13,475 check.warn(importable) 2025-12-09T17:02:13,476 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.seqyclean' is absent from the `packages` configuration. 2025-12-09T17:02:13,477 !! 2025-12-09T17:02:13,478 ******************************************************************************** 2025-12-09T17:02:13,478 ############################ 2025-12-09T17:02:13,479 # Package would be ignored # 2025-12-09T17:02:13,480 ############################ 2025-12-09T17:02:13,480 Python recognizes 'multiqc.modules.seqyclean' as an importable package[^1], 2025-12-09T17:02:13,482 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,482 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,483 package, please make sure that 'multiqc.modules.seqyclean' is explicitly added 2025-12-09T17:02:13,484 to the `packages` configuration field. 2025-12-09T17:02:13,484 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,485 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,485 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,486 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,487 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,488 If you don't want 'multiqc.modules.seqyclean' to be distributed and are 2025-12-09T17:02:13,489 already explicitly excluding 'multiqc.modules.seqyclean' via 2025-12-09T17:02:13,489 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,489 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,490 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,491 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,492 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,494 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,494 even if it does not contain any `.py` files. 2025-12-09T17:02:13,495 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,496 directory, all directories are treated like packages. 2025-12-09T17:02:13,496 ******************************************************************************** 2025-12-09T17:02:13,497 !! 2025-12-09T17:02:13,498 check.warn(importable) 2025-12-09T17:02:13,499 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sexdeterrmine' is absent from the `packages` configuration. 2025-12-09T17:02:13,499 !! 2025-12-09T17:02:13,500 ******************************************************************************** 2025-12-09T17:02:13,501 ############################ 2025-12-09T17:02:13,502 # Package would be ignored # 2025-12-09T17:02:13,502 ############################ 2025-12-09T17:02:13,503 Python recognizes 'multiqc.modules.sexdeterrmine' as an importable package[^1], 2025-12-09T17:02:13,503 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,505 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,505 package, please make sure that 'multiqc.modules.sexdeterrmine' is explicitly added 2025-12-09T17:02:13,506 to the `packages` configuration field. 2025-12-09T17:02:13,507 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,507 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,508 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,509 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,510 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,512 If you don't want 'multiqc.modules.sexdeterrmine' to be distributed and are 2025-12-09T17:02:13,512 already explicitly excluding 'multiqc.modules.sexdeterrmine' via 2025-12-09T17:02:13,513 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,514 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,515 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,515 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,516 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,518 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,518 even if it does not contain any `.py` files. 2025-12-09T17:02:13,518 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,519 directory, all directories are treated like packages. 2025-12-09T17:02:13,519 ******************************************************************************** 2025-12-09T17:02:13,520 !! 2025-12-09T17:02:13,521 check.warn(importable) 2025-12-09T17:02:13,521 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sickle' is absent from the `packages` configuration. 2025-12-09T17:02:13,522 !! 2025-12-09T17:02:13,523 ******************************************************************************** 2025-12-09T17:02:13,523 ############################ 2025-12-09T17:02:13,524 # Package would be ignored # 2025-12-09T17:02:13,524 ############################ 2025-12-09T17:02:13,525 Python recognizes 'multiqc.modules.sickle' as an importable package[^1], 2025-12-09T17:02:13,525 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,526 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,527 package, please make sure that 'multiqc.modules.sickle' is explicitly added 2025-12-09T17:02:13,528 to the `packages` configuration field. 2025-12-09T17:02:13,529 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,530 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,530 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,532 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,533 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,535 If you don't want 'multiqc.modules.sickle' to be distributed and are 2025-12-09T17:02:13,535 already explicitly excluding 'multiqc.modules.sickle' via 2025-12-09T17:02:13,536 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,536 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,537 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,538 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,539 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,541 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,542 even if it does not contain any `.py` files. 2025-12-09T17:02:13,542 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,543 directory, all directories are treated like packages. 2025-12-09T17:02:13,544 ******************************************************************************** 2025-12-09T17:02:13,545 !! 2025-12-09T17:02:13,546 check.warn(importable) 2025-12-09T17:02:13,546 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.skewer' is absent from the `packages` configuration. 2025-12-09T17:02:13,547 !! 2025-12-09T17:02:13,548 ******************************************************************************** 2025-12-09T17:02:13,549 ############################ 2025-12-09T17:02:13,549 # Package would be ignored # 2025-12-09T17:02:13,550 ############################ 2025-12-09T17:02:13,550 Python recognizes 'multiqc.modules.skewer' as an importable package[^1], 2025-12-09T17:02:13,551 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,553 package, please make sure that 'multiqc.modules.skewer' is explicitly added 2025-12-09T17:02:13,553 to the `packages` configuration field. 2025-12-09T17:02:13,554 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,555 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,556 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,557 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,558 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,559 If you don't want 'multiqc.modules.skewer' to be distributed and are 2025-12-09T17:02:13,559 already explicitly excluding 'multiqc.modules.skewer' via 2025-12-09T17:02:13,560 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,560 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,561 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,562 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,563 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,566 even if it does not contain any `.py` files. 2025-12-09T17:02:13,566 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,567 directory, all directories are treated like packages. 2025-12-09T17:02:13,568 ******************************************************************************** 2025-12-09T17:02:13,569 !! 2025-12-09T17:02:13,570 check.warn(importable) 2025-12-09T17:02:13,570 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.slamdunk' is absent from the `packages` configuration. 2025-12-09T17:02:13,571 !! 2025-12-09T17:02:13,572 ******************************************************************************** 2025-12-09T17:02:13,573 ############################ 2025-12-09T17:02:13,573 # Package would be ignored # 2025-12-09T17:02:13,574 ############################ 2025-12-09T17:02:13,574 Python recognizes 'multiqc.modules.slamdunk' as an importable package[^1], 2025-12-09T17:02:13,575 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,576 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,577 package, please make sure that 'multiqc.modules.slamdunk' is explicitly added 2025-12-09T17:02:13,578 to the `packages` configuration field. 2025-12-09T17:02:13,579 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,580 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,580 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,582 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,583 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,584 If you don't want 'multiqc.modules.slamdunk' to be distributed and are 2025-12-09T17:02:13,584 already explicitly excluding 'multiqc.modules.slamdunk' via 2025-12-09T17:02:13,585 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,585 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,586 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,587 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,587 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,589 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,589 even if it does not contain any `.py` files. 2025-12-09T17:02:13,590 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,590 directory, all directories are treated like packages. 2025-12-09T17:02:13,591 ******************************************************************************** 2025-12-09T17:02:13,592 !! 2025-12-09T17:02:13,592 check.warn(importable) 2025-12-09T17:02:13,593 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.snippy' is absent from the `packages` configuration. 2025-12-09T17:02:13,593 !! 2025-12-09T17:02:13,594 ******************************************************************************** 2025-12-09T17:02:13,595 ############################ 2025-12-09T17:02:13,596 # Package would be ignored # 2025-12-09T17:02:13,596 ############################ 2025-12-09T17:02:13,597 Python recognizes 'multiqc.modules.snippy' as an importable package[^1], 2025-12-09T17:02:13,597 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,599 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,599 package, please make sure that 'multiqc.modules.snippy' is explicitly added 2025-12-09T17:02:13,600 to the `packages` configuration field. 2025-12-09T17:02:13,601 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,602 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,603 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,604 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,605 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,606 If you don't want 'multiqc.modules.snippy' to be distributed and are 2025-12-09T17:02:13,607 already explicitly excluding 'multiqc.modules.snippy' via 2025-12-09T17:02:13,607 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,608 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,609 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,610 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,611 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,613 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,614 even if it does not contain any `.py` files. 2025-12-09T17:02:13,614 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,615 directory, all directories are treated like packages. 2025-12-09T17:02:13,616 ******************************************************************************** 2025-12-09T17:02:13,617 !! 2025-12-09T17:02:13,617 check.warn(importable) 2025-12-09T17:02:13,618 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.snpeff' is absent from the `packages` configuration. 2025-12-09T17:02:13,618 !! 2025-12-09T17:02:13,619 ******************************************************************************** 2025-12-09T17:02:13,620 ############################ 2025-12-09T17:02:13,620 # Package would be ignored # 2025-12-09T17:02:13,621 ############################ 2025-12-09T17:02:13,621 Python recognizes 'multiqc.modules.snpeff' as an importable package[^1], 2025-12-09T17:02:13,622 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,622 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,623 package, please make sure that 'multiqc.modules.snpeff' is explicitly added 2025-12-09T17:02:13,623 to the `packages` configuration field. 2025-12-09T17:02:13,624 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,625 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,625 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,627 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,628 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,629 If you don't want 'multiqc.modules.snpeff' to be distributed and are 2025-12-09T17:02:13,630 already explicitly excluding 'multiqc.modules.snpeff' via 2025-12-09T17:02:13,631 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,632 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,633 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,635 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,637 even if it does not contain any `.py` files. 2025-12-09T17:02:13,638 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,638 directory, all directories are treated like packages. 2025-12-09T17:02:13,639 ******************************************************************************** 2025-12-09T17:02:13,640 !! 2025-12-09T17:02:13,641 check.warn(importable) 2025-12-09T17:02:13,641 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.snpsplit' is absent from the `packages` configuration. 2025-12-09T17:02:13,642 !! 2025-12-09T17:02:13,643 ******************************************************************************** 2025-12-09T17:02:13,644 ############################ 2025-12-09T17:02:13,644 # Package would be ignored # 2025-12-09T17:02:13,645 ############################ 2025-12-09T17:02:13,645 Python recognizes 'multiqc.modules.snpsplit' as an importable package[^1], 2025-12-09T17:02:13,646 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,648 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,649 package, please make sure that 'multiqc.modules.snpsplit' is explicitly added 2025-12-09T17:02:13,650 to the `packages` configuration field. 2025-12-09T17:02:13,651 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,651 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,651 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,652 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,653 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,654 If you don't want 'multiqc.modules.snpsplit' to be distributed and are 2025-12-09T17:02:13,655 already explicitly excluding 'multiqc.modules.snpsplit' via 2025-12-09T17:02:13,655 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,656 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,656 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,657 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,658 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,660 even if it does not contain any `.py` files. 2025-12-09T17:02:13,660 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,661 directory, all directories are treated like packages. 2025-12-09T17:02:13,661 ******************************************************************************** 2025-12-09T17:02:13,663 !! 2025-12-09T17:02:13,663 check.warn(importable) 2025-12-09T17:02:13,664 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.somalier' is absent from the `packages` configuration. 2025-12-09T17:02:13,664 !! 2025-12-09T17:02:13,666 ******************************************************************************** 2025-12-09T17:02:13,666 ############################ 2025-12-09T17:02:13,667 # Package would be ignored # 2025-12-09T17:02:13,668 ############################ 2025-12-09T17:02:13,668 Python recognizes 'multiqc.modules.somalier' as an importable package[^1], 2025-12-09T17:02:13,669 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,670 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,671 package, please make sure that 'multiqc.modules.somalier' is explicitly added 2025-12-09T17:02:13,672 to the `packages` configuration field. 2025-12-09T17:02:13,673 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,673 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,674 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,675 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,676 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,677 If you don't want 'multiqc.modules.somalier' to be distributed and are 2025-12-09T17:02:13,678 already explicitly excluding 'multiqc.modules.somalier' via 2025-12-09T17:02:13,679 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,680 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,682 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,683 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,684 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,684 even if it does not contain any `.py` files. 2025-12-09T17:02:13,685 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,685 directory, all directories are treated like packages. 2025-12-09T17:02:13,686 ******************************************************************************** 2025-12-09T17:02:13,687 !! 2025-12-09T17:02:13,687 check.warn(importable) 2025-12-09T17:02:13,687 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sompy' is absent from the `packages` configuration. 2025-12-09T17:02:13,688 !! 2025-12-09T17:02:13,689 ******************************************************************************** 2025-12-09T17:02:13,690 ############################ 2025-12-09T17:02:13,690 # Package would be ignored # 2025-12-09T17:02:13,691 ############################ 2025-12-09T17:02:13,691 Python recognizes 'multiqc.modules.sompy' as an importable package[^1], 2025-12-09T17:02:13,692 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,693 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,694 package, please make sure that 'multiqc.modules.sompy' is explicitly added 2025-12-09T17:02:13,694 to the `packages` configuration field. 2025-12-09T17:02:13,695 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,696 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,697 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,700 If you don't want 'multiqc.modules.sompy' to be distributed and are 2025-12-09T17:02:13,701 already explicitly excluding 'multiqc.modules.sompy' via 2025-12-09T17:02:13,701 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,702 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,703 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,704 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,705 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,707 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,707 even if it does not contain any `.py` files. 2025-12-09T17:02:13,708 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,709 directory, all directories are treated like packages. 2025-12-09T17:02:13,709 ******************************************************************************** 2025-12-09T17:02:13,710 !! 2025-12-09T17:02:13,711 check.warn(importable) 2025-12-09T17:02:13,712 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sortmerna' is absent from the `packages` configuration. 2025-12-09T17:02:13,712 !! 2025-12-09T17:02:13,714 ******************************************************************************** 2025-12-09T17:02:13,714 ############################ 2025-12-09T17:02:13,715 # Package would be ignored # 2025-12-09T17:02:13,716 ############################ 2025-12-09T17:02:13,717 Python recognizes 'multiqc.modules.sortmerna' as an importable package[^1], 2025-12-09T17:02:13,717 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,718 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,718 package, please make sure that 'multiqc.modules.sortmerna' is explicitly added 2025-12-09T17:02:13,719 to the `packages` configuration field. 2025-12-09T17:02:13,720 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,720 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,721 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,722 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,723 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,724 If you don't want 'multiqc.modules.sortmerna' to be distributed and are 2025-12-09T17:02:13,724 already explicitly excluding 'multiqc.modules.sortmerna' via 2025-12-09T17:02:13,725 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,725 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,726 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,727 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,728 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,730 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,731 even if it does not contain any `.py` files. 2025-12-09T17:02:13,731 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,732 directory, all directories are treated like packages. 2025-12-09T17:02:13,733 ******************************************************************************** 2025-12-09T17:02:13,734 !! 2025-12-09T17:02:13,735 check.warn(importable) 2025-12-09T17:02:13,735 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sourmash' is absent from the `packages` configuration. 2025-12-09T17:02:13,736 !! 2025-12-09T17:02:13,737 ******************************************************************************** 2025-12-09T17:02:13,738 ############################ 2025-12-09T17:02:13,739 # Package would be ignored # 2025-12-09T17:02:13,739 ############################ 2025-12-09T17:02:13,740 Python recognizes 'multiqc.modules.sourmash' as an importable package[^1], 2025-12-09T17:02:13,740 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,741 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,742 package, please make sure that 'multiqc.modules.sourmash' is explicitly added 2025-12-09T17:02:13,742 to the `packages` configuration field. 2025-12-09T17:02:13,743 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,744 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,744 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,745 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,747 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,748 If you don't want 'multiqc.modules.sourmash' to be distributed and are 2025-12-09T17:02:13,748 already explicitly excluding 'multiqc.modules.sourmash' via 2025-12-09T17:02:13,749 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,749 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,750 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,751 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,751 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,752 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,753 even if it does not contain any `.py` files. 2025-12-09T17:02:13,753 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,753 directory, all directories are treated like packages. 2025-12-09T17:02:13,754 ******************************************************************************** 2025-12-09T17:02:13,755 !! 2025-12-09T17:02:13,755 check.warn(importable) 2025-12-09T17:02:13,755 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.spaceranger' is absent from the `packages` configuration. 2025-12-09T17:02:13,756 !! 2025-12-09T17:02:13,757 ******************************************************************************** 2025-12-09T17:02:13,757 ############################ 2025-12-09T17:02:13,757 # Package would be ignored # 2025-12-09T17:02:13,758 ############################ 2025-12-09T17:02:13,758 Python recognizes 'multiqc.modules.spaceranger' as an importable package[^1], 2025-12-09T17:02:13,759 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,760 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,761 package, please make sure that 'multiqc.modules.spaceranger' is explicitly added 2025-12-09T17:02:13,761 to the `packages` configuration field. 2025-12-09T17:02:13,762 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,763 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,763 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,764 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,766 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,767 If you don't want 'multiqc.modules.spaceranger' to be distributed and are 2025-12-09T17:02:13,767 already explicitly excluding 'multiqc.modules.spaceranger' via 2025-12-09T17:02:13,768 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,768 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,768 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,769 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,770 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,772 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,772 even if it does not contain any `.py` files. 2025-12-09T17:02:13,773 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,773 directory, all directories are treated like packages. 2025-12-09T17:02:13,774 ******************************************************************************** 2025-12-09T17:02:13,775 !! 2025-12-09T17:02:13,776 check.warn(importable) 2025-12-09T17:02:13,776 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.stacks' is absent from the `packages` configuration. 2025-12-09T17:02:13,776 !! 2025-12-09T17:02:13,777 ******************************************************************************** 2025-12-09T17:02:13,777 ############################ 2025-12-09T17:02:13,778 # Package would be ignored # 2025-12-09T17:02:13,778 ############################ 2025-12-09T17:02:13,778 Python recognizes 'multiqc.modules.stacks' as an importable package[^1], 2025-12-09T17:02:13,779 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,779 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,780 package, please make sure that 'multiqc.modules.stacks' is explicitly added 2025-12-09T17:02:13,780 to the `packages` configuration field. 2025-12-09T17:02:13,781 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,782 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,782 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,783 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,784 If you don't want 'multiqc.modules.stacks' to be distributed and are 2025-12-09T17:02:13,785 already explicitly excluding 'multiqc.modules.stacks' via 2025-12-09T17:02:13,785 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,786 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,786 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,787 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,788 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,790 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,790 even if it does not contain any `.py` files. 2025-12-09T17:02:13,791 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,791 directory, all directories are treated like packages. 2025-12-09T17:02:13,792 ******************************************************************************** 2025-12-09T17:02:13,793 !! 2025-12-09T17:02:13,794 check.warn(importable) 2025-12-09T17:02:13,794 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.star' is absent from the `packages` configuration. 2025-12-09T17:02:13,795 !! 2025-12-09T17:02:13,795 ******************************************************************************** 2025-12-09T17:02:13,796 ############################ 2025-12-09T17:02:13,796 # Package would be ignored # 2025-12-09T17:02:13,797 ############################ 2025-12-09T17:02:13,797 Python recognizes 'multiqc.modules.star' as an importable package[^1], 2025-12-09T17:02:13,798 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,799 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,799 package, please make sure that 'multiqc.modules.star' is explicitly added 2025-12-09T17:02:13,800 to the `packages` configuration field. 2025-12-09T17:02:13,801 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,801 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,802 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,803 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,804 If you don't want 'multiqc.modules.star' to be distributed and are 2025-12-09T17:02:13,805 already explicitly excluding 'multiqc.modules.star' via 2025-12-09T17:02:13,805 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,805 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,806 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,806 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,808 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,809 even if it does not contain any `.py` files. 2025-12-09T17:02:13,809 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,810 directory, all directories are treated like packages. 2025-12-09T17:02:13,810 ******************************************************************************** 2025-12-09T17:02:13,811 !! 2025-12-09T17:02:13,811 check.warn(importable) 2025-12-09T17:02:13,812 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.supernova' is absent from the `packages` configuration. 2025-12-09T17:02:13,812 !! 2025-12-09T17:02:13,814 ******************************************************************************** 2025-12-09T17:02:13,814 ############################ 2025-12-09T17:02:13,815 # Package would be ignored # 2025-12-09T17:02:13,815 ############################ 2025-12-09T17:02:13,816 Python recognizes 'multiqc.modules.supernova' as an importable package[^1], 2025-12-09T17:02:13,816 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,818 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,818 package, please make sure that 'multiqc.modules.supernova' is explicitly added 2025-12-09T17:02:13,819 to the `packages` configuration field. 2025-12-09T17:02:13,820 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,820 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,821 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,822 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,823 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,824 If you don't want 'multiqc.modules.supernova' to be distributed and are 2025-12-09T17:02:13,825 already explicitly excluding 'multiqc.modules.supernova' via 2025-12-09T17:02:13,825 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,825 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,826 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,827 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,828 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,830 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,831 even if it does not contain any `.py` files. 2025-12-09T17:02:13,831 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,832 directory, all directories are treated like packages. 2025-12-09T17:02:13,832 ******************************************************************************** 2025-12-09T17:02:13,833 !! 2025-12-09T17:02:13,833 check.warn(importable) 2025-12-09T17:02:13,834 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.sylphtax' is absent from the `packages` configuration. 2025-12-09T17:02:13,834 !! 2025-12-09T17:02:13,835 ******************************************************************************** 2025-12-09T17:02:13,835 ############################ 2025-12-09T17:02:13,835 # Package would be ignored # 2025-12-09T17:02:13,836 ############################ 2025-12-09T17:02:13,836 Python recognizes 'multiqc.modules.sylphtax' as an importable package[^1], 2025-12-09T17:02:13,836 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,837 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,838 package, please make sure that 'multiqc.modules.sylphtax' is explicitly added 2025-12-09T17:02:13,838 to the `packages` configuration field. 2025-12-09T17:02:13,839 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,840 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,840 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,842 If you don't want 'multiqc.modules.sylphtax' to be distributed and are 2025-12-09T17:02:13,843 already explicitly excluding 'multiqc.modules.sylphtax' via 2025-12-09T17:02:13,843 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,844 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,844 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,845 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,848 even if it does not contain any `.py` files. 2025-12-09T17:02:13,849 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,849 directory, all directories are treated like packages. 2025-12-09T17:02:13,850 ******************************************************************************** 2025-12-09T17:02:13,851 !! 2025-12-09T17:02:13,851 check.warn(importable) 2025-12-09T17:02:13,852 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.telseq' is absent from the `packages` configuration. 2025-12-09T17:02:13,852 !! 2025-12-09T17:02:13,853 ******************************************************************************** 2025-12-09T17:02:13,854 ############################ 2025-12-09T17:02:13,855 # Package would be ignored # 2025-12-09T17:02:13,855 ############################ 2025-12-09T17:02:13,856 Python recognizes 'multiqc.modules.telseq' as an importable package[^1], 2025-12-09T17:02:13,856 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,857 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,858 package, please make sure that 'multiqc.modules.telseq' is explicitly added 2025-12-09T17:02:13,858 to the `packages` configuration field. 2025-12-09T17:02:13,859 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,859 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,859 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,860 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,861 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,862 If you don't want 'multiqc.modules.telseq' to be distributed and are 2025-12-09T17:02:13,862 already explicitly excluding 'multiqc.modules.telseq' via 2025-12-09T17:02:13,862 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,863 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,863 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,864 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,865 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,866 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,867 even if it does not contain any `.py` files. 2025-12-09T17:02:13,867 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,868 directory, all directories are treated like packages. 2025-12-09T17:02:13,869 ******************************************************************************** 2025-12-09T17:02:13,870 !! 2025-12-09T17:02:13,871 check.warn(importable) 2025-12-09T17:02:13,871 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.theta2' is absent from the `packages` configuration. 2025-12-09T17:02:13,872 !! 2025-12-09T17:02:13,873 ******************************************************************************** 2025-12-09T17:02:13,874 ############################ 2025-12-09T17:02:13,874 # Package would be ignored # 2025-12-09T17:02:13,875 ############################ 2025-12-09T17:02:13,876 Python recognizes 'multiqc.modules.theta2' as an importable package[^1], 2025-12-09T17:02:13,876 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,878 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,878 package, please make sure that 'multiqc.modules.theta2' is explicitly added 2025-12-09T17:02:13,878 to the `packages` configuration field. 2025-12-09T17:02:13,879 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,880 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,880 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,881 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,882 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,883 If you don't want 'multiqc.modules.theta2' to be distributed and are 2025-12-09T17:02:13,884 already explicitly excluding 'multiqc.modules.theta2' via 2025-12-09T17:02:13,884 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,885 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,886 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,887 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,887 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,888 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,889 even if it does not contain any `.py` files. 2025-12-09T17:02:13,889 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,889 directory, all directories are treated like packages. 2025-12-09T17:02:13,890 ******************************************************************************** 2025-12-09T17:02:13,891 !! 2025-12-09T17:02:13,891 check.warn(importable) 2025-12-09T17:02:13,892 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.tophat' is absent from the `packages` configuration. 2025-12-09T17:02:13,892 !! 2025-12-09T17:02:13,893 ******************************************************************************** 2025-12-09T17:02:13,893 ############################ 2025-12-09T17:02:13,894 # Package would be ignored # 2025-12-09T17:02:13,894 ############################ 2025-12-09T17:02:13,894 Python recognizes 'multiqc.modules.tophat' as an importable package[^1], 2025-12-09T17:02:13,895 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,896 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,896 package, please make sure that 'multiqc.modules.tophat' is explicitly added 2025-12-09T17:02:13,897 to the `packages` configuration field. 2025-12-09T17:02:13,898 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,898 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,899 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,900 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,902 If you don't want 'multiqc.modules.tophat' to be distributed and are 2025-12-09T17:02:13,903 already explicitly excluding 'multiqc.modules.tophat' via 2025-12-09T17:02:13,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,904 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,905 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,905 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,908 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,908 even if it does not contain any `.py` files. 2025-12-09T17:02:13,908 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,909 directory, all directories are treated like packages. 2025-12-09T17:02:13,909 ******************************************************************************** 2025-12-09T17:02:13,910 !! 2025-12-09T17:02:13,911 check.warn(importable) 2025-12-09T17:02:13,911 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.trimmomatic' is absent from the `packages` configuration. 2025-12-09T17:02:13,912 !! 2025-12-09T17:02:13,913 ******************************************************************************** 2025-12-09T17:02:13,913 ############################ 2025-12-09T17:02:13,914 # Package would be ignored # 2025-12-09T17:02:13,914 ############################ 2025-12-09T17:02:13,914 Python recognizes 'multiqc.modules.trimmomatic' as an importable package[^1], 2025-12-09T17:02:13,915 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,915 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,916 package, please make sure that 'multiqc.modules.trimmomatic' is explicitly added 2025-12-09T17:02:13,916 to the `packages` configuration field. 2025-12-09T17:02:13,917 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,917 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,917 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,918 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,919 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,920 If you don't want 'multiqc.modules.trimmomatic' to be distributed and are 2025-12-09T17:02:13,920 already explicitly excluding 'multiqc.modules.trimmomatic' via 2025-12-09T17:02:13,921 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,921 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,922 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,923 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,924 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,925 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,925 even if it does not contain any `.py` files. 2025-12-09T17:02:13,926 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,926 directory, all directories are treated like packages. 2025-12-09T17:02:13,927 ******************************************************************************** 2025-12-09T17:02:13,928 !! 2025-12-09T17:02:13,928 check.warn(importable) 2025-12-09T17:02:13,929 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.truvari' is absent from the `packages` configuration. 2025-12-09T17:02:13,930 !! 2025-12-09T17:02:13,931 ******************************************************************************** 2025-12-09T17:02:13,931 ############################ 2025-12-09T17:02:13,931 # Package would be ignored # 2025-12-09T17:02:13,932 ############################ 2025-12-09T17:02:13,932 Python recognizes 'multiqc.modules.truvari' as an importable package[^1], 2025-12-09T17:02:13,933 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,934 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,934 package, please make sure that 'multiqc.modules.truvari' is explicitly added 2025-12-09T17:02:13,935 to the `packages` configuration field. 2025-12-09T17:02:13,936 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,936 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,937 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,938 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,939 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,939 If you don't want 'multiqc.modules.truvari' to be distributed and are 2025-12-09T17:02:13,940 already explicitly excluding 'multiqc.modules.truvari' via 2025-12-09T17:02:13,940 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,941 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,941 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,942 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,942 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,943 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,944 even if it does not contain any `.py` files. 2025-12-09T17:02:13,944 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,944 directory, all directories are treated like packages. 2025-12-09T17:02:13,945 ******************************************************************************** 2025-12-09T17:02:13,945 !! 2025-12-09T17:02:13,946 check.warn(importable) 2025-12-09T17:02:13,946 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.umicollapse' is absent from the `packages` configuration. 2025-12-09T17:02:13,946 !! 2025-12-09T17:02:13,947 ******************************************************************************** 2025-12-09T17:02:13,948 ############################ 2025-12-09T17:02:13,948 # Package would be ignored # 2025-12-09T17:02:13,949 ############################ 2025-12-09T17:02:13,949 Python recognizes 'multiqc.modules.umicollapse' as an importable package[^1], 2025-12-09T17:02:13,950 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,951 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,951 package, please make sure that 'multiqc.modules.umicollapse' is explicitly added 2025-12-09T17:02:13,952 to the `packages` configuration field. 2025-12-09T17:02:13,953 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,953 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,954 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,954 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,955 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,956 If you don't want 'multiqc.modules.umicollapse' to be distributed and are 2025-12-09T17:02:13,957 already explicitly excluding 'multiqc.modules.umicollapse' via 2025-12-09T17:02:13,957 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,958 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,958 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,959 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,960 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,962 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,965 even if it does not contain any `.py` files. 2025-12-09T17:02:13,965 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,966 directory, all directories are treated like packages. 2025-12-09T17:02:13,966 ******************************************************************************** 2025-12-09T17:02:13,967 !! 2025-12-09T17:02:13,968 check.warn(importable) 2025-12-09T17:02:13,968 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.umicollapse.tests' is absent from the `packages` configuration. 2025-12-09T17:02:13,968 !! 2025-12-09T17:02:13,969 ******************************************************************************** 2025-12-09T17:02:13,969 ############################ 2025-12-09T17:02:13,970 # Package would be ignored # 2025-12-09T17:02:13,970 ############################ 2025-12-09T17:02:13,970 Python recognizes 'multiqc.modules.umicollapse.tests' as an importable package[^1], 2025-12-09T17:02:13,971 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,971 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,972 package, please make sure that 'multiqc.modules.umicollapse.tests' is explicitly added 2025-12-09T17:02:13,972 to the `packages` configuration field. 2025-12-09T17:02:13,973 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,974 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,974 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,975 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,977 If you don't want 'multiqc.modules.umicollapse.tests' to be distributed and are 2025-12-09T17:02:13,977 already explicitly excluding 'multiqc.modules.umicollapse.tests' via 2025-12-09T17:02:13,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,978 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,979 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:13,980 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:13,981 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:13,983 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:13,984 even if it does not contain any `.py` files. 2025-12-09T17:02:13,984 On the other hand, currently there is no concept of package data 2025-12-09T17:02:13,985 directory, all directories are treated like packages. 2025-12-09T17:02:13,985 ******************************************************************************** 2025-12-09T17:02:13,986 !! 2025-12-09T17:02:13,987 check.warn(importable) 2025-12-09T17:02:13,987 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.umitools' is absent from the `packages` configuration. 2025-12-09T17:02:13,988 !! 2025-12-09T17:02:13,988 ******************************************************************************** 2025-12-09T17:02:13,989 ############################ 2025-12-09T17:02:13,989 # Package would be ignored # 2025-12-09T17:02:13,990 ############################ 2025-12-09T17:02:13,991 Python recognizes 'multiqc.modules.umitools' as an importable package[^1], 2025-12-09T17:02:13,991 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:13,992 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:13,993 package, please make sure that 'multiqc.modules.umitools' is explicitly added 2025-12-09T17:02:13,993 to the `packages` configuration field. 2025-12-09T17:02:13,995 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:13,995 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:13,995 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:13,996 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:13,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:13,998 If you don't want 'multiqc.modules.umitools' to be distributed and are 2025-12-09T17:02:13,998 already explicitly excluding 'multiqc.modules.umitools' via 2025-12-09T17:02:13,998 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:13,999 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:13,999 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,000 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,000 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,002 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,002 even if it does not contain any `.py` files. 2025-12-09T17:02:14,002 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,003 directory, all directories are treated like packages. 2025-12-09T17:02:14,003 ******************************************************************************** 2025-12-09T17:02:14,004 !! 2025-12-09T17:02:14,005 check.warn(importable) 2025-12-09T17:02:14,005 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.umitools.tests' is absent from the `packages` configuration. 2025-12-09T17:02:14,006 !! 2025-12-09T17:02:14,007 ******************************************************************************** 2025-12-09T17:02:14,008 ############################ 2025-12-09T17:02:14,008 # Package would be ignored # 2025-12-09T17:02:14,009 ############################ 2025-12-09T17:02:14,009 Python recognizes 'multiqc.modules.umitools.tests' as an importable package[^1], 2025-12-09T17:02:14,010 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,011 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,011 package, please make sure that 'multiqc.modules.umitools.tests' is explicitly added 2025-12-09T17:02:14,012 to the `packages` configuration field. 2025-12-09T17:02:14,013 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,013 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,014 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,015 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,016 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,017 If you don't want 'multiqc.modules.umitools.tests' to be distributed and are 2025-12-09T17:02:14,017 already explicitly excluding 'multiqc.modules.umitools.tests' via 2025-12-09T17:02:14,018 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,018 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,019 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,020 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,021 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,022 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,022 even if it does not contain any `.py` files. 2025-12-09T17:02:14,022 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,023 directory, all directories are treated like packages. 2025-12-09T17:02:14,023 ******************************************************************************** 2025-12-09T17:02:14,024 !! 2025-12-09T17:02:14,024 check.warn(importable) 2025-12-09T17:02:14,025 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.varscan2' is absent from the `packages` configuration. 2025-12-09T17:02:14,025 !! 2025-12-09T17:02:14,026 ******************************************************************************** 2025-12-09T17:02:14,026 ############################ 2025-12-09T17:02:14,026 # Package would be ignored # 2025-12-09T17:02:14,027 ############################ 2025-12-09T17:02:14,027 Python recognizes 'multiqc.modules.varscan2' as an importable package[^1], 2025-12-09T17:02:14,027 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,028 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,029 package, please make sure that 'multiqc.modules.varscan2' is explicitly added 2025-12-09T17:02:14,029 to the `packages` configuration field. 2025-12-09T17:02:14,030 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,031 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,031 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,033 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,034 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,035 If you don't want 'multiqc.modules.varscan2' to be distributed and are 2025-12-09T17:02:14,035 already explicitly excluding 'multiqc.modules.varscan2' via 2025-12-09T17:02:14,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,037 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,037 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,039 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,040 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,041 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,042 even if it does not contain any `.py` files. 2025-12-09T17:02:14,042 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,043 directory, all directories are treated like packages. 2025-12-09T17:02:14,043 ******************************************************************************** 2025-12-09T17:02:14,044 !! 2025-12-09T17:02:14,045 check.warn(importable) 2025-12-09T17:02:14,045 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.vcftools' is absent from the `packages` configuration. 2025-12-09T17:02:14,046 !! 2025-12-09T17:02:14,047 ******************************************************************************** 2025-12-09T17:02:14,047 ############################ 2025-12-09T17:02:14,048 # Package would be ignored # 2025-12-09T17:02:14,049 ############################ 2025-12-09T17:02:14,049 Python recognizes 'multiqc.modules.vcftools' as an importable package[^1], 2025-12-09T17:02:14,049 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,050 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,050 package, please make sure that 'multiqc.modules.vcftools' is explicitly added 2025-12-09T17:02:14,051 to the `packages` configuration field. 2025-12-09T17:02:14,051 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,052 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,052 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,053 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,054 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,054 If you don't want 'multiqc.modules.vcftools' to be distributed and are 2025-12-09T17:02:14,055 already explicitly excluding 'multiqc.modules.vcftools' via 2025-12-09T17:02:14,055 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,055 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,056 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,056 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,057 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,059 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,060 even if it does not contain any `.py` files. 2025-12-09T17:02:14,060 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,061 directory, all directories are treated like packages. 2025-12-09T17:02:14,061 ******************************************************************************** 2025-12-09T17:02:14,062 !! 2025-12-09T17:02:14,063 check.warn(importable) 2025-12-09T17:02:14,063 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.vep' is absent from the `packages` configuration. 2025-12-09T17:02:14,064 !! 2025-12-09T17:02:14,065 ******************************************************************************** 2025-12-09T17:02:14,066 ############################ 2025-12-09T17:02:14,066 # Package would be ignored # 2025-12-09T17:02:14,066 ############################ 2025-12-09T17:02:14,067 Python recognizes 'multiqc.modules.vep' as an importable package[^1], 2025-12-09T17:02:14,067 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,068 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,069 package, please make sure that 'multiqc.modules.vep' is explicitly added 2025-12-09T17:02:14,069 to the `packages` configuration field. 2025-12-09T17:02:14,070 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,071 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,071 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,072 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,074 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,075 If you don't want 'multiqc.modules.vep' to be distributed and are 2025-12-09T17:02:14,075 already explicitly excluding 'multiqc.modules.vep' via 2025-12-09T17:02:14,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,076 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,077 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,077 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,078 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,079 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,079 even if it does not contain any `.py` files. 2025-12-09T17:02:14,080 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,080 directory, all directories are treated like packages. 2025-12-09T17:02:14,081 ******************************************************************************** 2025-12-09T17:02:14,082 !! 2025-12-09T17:02:14,082 check.warn(importable) 2025-12-09T17:02:14,082 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.verifybamid' is absent from the `packages` configuration. 2025-12-09T17:02:14,083 !! 2025-12-09T17:02:14,083 ******************************************************************************** 2025-12-09T17:02:14,084 ############################ 2025-12-09T17:02:14,084 # Package would be ignored # 2025-12-09T17:02:14,084 ############################ 2025-12-09T17:02:14,085 Python recognizes 'multiqc.modules.verifybamid' as an importable package[^1], 2025-12-09T17:02:14,085 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,086 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,087 package, please make sure that 'multiqc.modules.verifybamid' is explicitly added 2025-12-09T17:02:14,087 to the `packages` configuration field. 2025-12-09T17:02:14,088 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,090 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,091 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,092 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,093 If you don't want 'multiqc.modules.verifybamid' to be distributed and are 2025-12-09T17:02:14,093 already explicitly excluding 'multiqc.modules.verifybamid' via 2025-12-09T17:02:14,094 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,094 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,095 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,095 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,098 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,099 even if it does not contain any `.py` files. 2025-12-09T17:02:14,099 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,100 directory, all directories are treated like packages. 2025-12-09T17:02:14,100 ******************************************************************************** 2025-12-09T17:02:14,101 !! 2025-12-09T17:02:14,102 check.warn(importable) 2025-12-09T17:02:14,103 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.vg' is absent from the `packages` configuration. 2025-12-09T17:02:14,103 !! 2025-12-09T17:02:14,104 ******************************************************************************** 2025-12-09T17:02:14,104 ############################ 2025-12-09T17:02:14,104 # Package would be ignored # 2025-12-09T17:02:14,105 ############################ 2025-12-09T17:02:14,105 Python recognizes 'multiqc.modules.vg' as an importable package[^1], 2025-12-09T17:02:14,106 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,106 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,107 package, please make sure that 'multiqc.modules.vg' is explicitly added 2025-12-09T17:02:14,107 to the `packages` configuration field. 2025-12-09T17:02:14,108 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,108 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,108 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,109 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,111 If you don't want 'multiqc.modules.vg' to be distributed and are 2025-12-09T17:02:14,111 already explicitly excluding 'multiqc.modules.vg' via 2025-12-09T17:02:14,112 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,112 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,113 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,114 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,117 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,117 even if it does not contain any `.py` files. 2025-12-09T17:02:14,118 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,118 directory, all directories are treated like packages. 2025-12-09T17:02:14,119 ******************************************************************************** 2025-12-09T17:02:14,120 !! 2025-12-09T17:02:14,121 check.warn(importable) 2025-12-09T17:02:14,121 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.whatshap' is absent from the `packages` configuration. 2025-12-09T17:02:14,122 !! 2025-12-09T17:02:14,123 ******************************************************************************** 2025-12-09T17:02:14,123 ############################ 2025-12-09T17:02:14,124 # Package would be ignored # 2025-12-09T17:02:14,124 ############################ 2025-12-09T17:02:14,125 Python recognizes 'multiqc.modules.whatshap' as an importable package[^1], 2025-12-09T17:02:14,125 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,126 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,127 package, please make sure that 'multiqc.modules.whatshap' is explicitly added 2025-12-09T17:02:14,127 to the `packages` configuration field. 2025-12-09T17:02:14,128 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,129 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,131 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,132 If you don't want 'multiqc.modules.whatshap' to be distributed and are 2025-12-09T17:02:14,132 already explicitly excluding 'multiqc.modules.whatshap' via 2025-12-09T17:02:14,133 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,133 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,133 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,134 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,135 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,136 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,136 even if it does not contain any `.py` files. 2025-12-09T17:02:14,137 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,137 directory, all directories are treated like packages. 2025-12-09T17:02:14,138 ******************************************************************************** 2025-12-09T17:02:14,138 !! 2025-12-09T17:02:14,139 check.warn(importable) 2025-12-09T17:02:14,139 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.xengsort' is absent from the `packages` configuration. 2025-12-09T17:02:14,142 !! 2025-12-09T17:02:14,143 ******************************************************************************** 2025-12-09T17:02:14,143 ############################ 2025-12-09T17:02:14,144 # Package would be ignored # 2025-12-09T17:02:14,144 ############################ 2025-12-09T17:02:14,145 Python recognizes 'multiqc.modules.xengsort' as an importable package[^1], 2025-12-09T17:02:14,145 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,146 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,147 package, please make sure that 'multiqc.modules.xengsort' is explicitly added 2025-12-09T17:02:14,147 to the `packages` configuration field. 2025-12-09T17:02:14,149 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,150 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,150 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,152 If you don't want 'multiqc.modules.xengsort' to be distributed and are 2025-12-09T17:02:14,153 already explicitly excluding 'multiqc.modules.xengsort' via 2025-12-09T17:02:14,153 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,154 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,155 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,158 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,159 even if it does not contain any `.py` files. 2025-12-09T17:02:14,160 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,160 directory, all directories are treated like packages. 2025-12-09T17:02:14,160 ******************************************************************************** 2025-12-09T17:02:14,161 !! 2025-12-09T17:02:14,161 check.warn(importable) 2025-12-09T17:02:14,162 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.xenium' is absent from the `packages` configuration. 2025-12-09T17:02:14,162 !! 2025-12-09T17:02:14,163 ******************************************************************************** 2025-12-09T17:02:14,163 ############################ 2025-12-09T17:02:14,164 # Package would be ignored # 2025-12-09T17:02:14,164 ############################ 2025-12-09T17:02:14,164 Python recognizes 'multiqc.modules.xenium' as an importable package[^1], 2025-12-09T17:02:14,165 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,165 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,166 package, please make sure that 'multiqc.modules.xenium' is explicitly added 2025-12-09T17:02:14,166 to the `packages` configuration field. 2025-12-09T17:02:14,167 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,168 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,169 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,170 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,171 If you don't want 'multiqc.modules.xenium' to be distributed and are 2025-12-09T17:02:14,171 already explicitly excluding 'multiqc.modules.xenium' via 2025-12-09T17:02:14,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,172 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,173 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,174 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,177 even if it does not contain any `.py` files. 2025-12-09T17:02:14,178 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,178 directory, all directories are treated like packages. 2025-12-09T17:02:14,179 ******************************************************************************** 2025-12-09T17:02:14,180 !! 2025-12-09T17:02:14,180 check.warn(importable) 2025-12-09T17:02:14,181 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.modules.xenome' is absent from the `packages` configuration. 2025-12-09T17:02:14,181 !! 2025-12-09T17:02:14,182 ******************************************************************************** 2025-12-09T17:02:14,183 ############################ 2025-12-09T17:02:14,183 # Package would be ignored # 2025-12-09T17:02:14,184 ############################ 2025-12-09T17:02:14,185 Python recognizes 'multiqc.modules.xenome' as an importable package[^1], 2025-12-09T17:02:14,185 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,186 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,187 package, please make sure that 'multiqc.modules.xenome' is explicitly added 2025-12-09T17:02:14,187 to the `packages` configuration field. 2025-12-09T17:02:14,188 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,188 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,188 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,189 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,190 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,191 If you don't want 'multiqc.modules.xenome' to be distributed and are 2025-12-09T17:02:14,191 already explicitly excluding 'multiqc.modules.xenome' via 2025-12-09T17:02:14,192 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,192 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,193 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,193 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,194 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,196 even if it does not contain any `.py` files. 2025-12-09T17:02:14,196 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,197 directory, all directories are treated like packages. 2025-12-09T17:02:14,197 ******************************************************************************** 2025-12-09T17:02:14,198 !! 2025-12-09T17:02:14,199 check.warn(importable) 2025-12-09T17:02:14,199 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.plots' is absent from the `packages` configuration. 2025-12-09T17:02:14,200 !! 2025-12-09T17:02:14,201 ******************************************************************************** 2025-12-09T17:02:14,201 ############################ 2025-12-09T17:02:14,202 # Package would be ignored # 2025-12-09T17:02:14,202 ############################ 2025-12-09T17:02:14,203 Python recognizes 'multiqc.plots' as an importable package[^1], 2025-12-09T17:02:14,204 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,205 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,205 package, please make sure that 'multiqc.plots' is explicitly added 2025-12-09T17:02:14,205 to the `packages` configuration field. 2025-12-09T17:02:14,206 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,207 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,207 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,208 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,210 If you don't want 'multiqc.plots' to be distributed and are 2025-12-09T17:02:14,211 already explicitly excluding 'multiqc.plots' via 2025-12-09T17:02:14,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,212 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,214 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,215 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,216 even if it does not contain any `.py` files. 2025-12-09T17:02:14,216 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,216 directory, all directories are treated like packages. 2025-12-09T17:02:14,217 ******************************************************************************** 2025-12-09T17:02:14,217 !! 2025-12-09T17:02:14,218 check.warn(importable) 2025-12-09T17:02:14,218 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates' is absent from the `packages` configuration. 2025-12-09T17:02:14,218 !! 2025-12-09T17:02:14,219 ******************************************************************************** 2025-12-09T17:02:14,219 ############################ 2025-12-09T17:02:14,220 # Package would be ignored # 2025-12-09T17:02:14,220 ############################ 2025-12-09T17:02:14,221 Python recognizes 'multiqc.templates' as an importable package[^1], 2025-12-09T17:02:14,221 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,222 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,222 package, please make sure that 'multiqc.templates' is explicitly added 2025-12-09T17:02:14,222 to the `packages` configuration field. 2025-12-09T17:02:14,223 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,224 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,224 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,226 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,228 If you don't want 'multiqc.templates' to be distributed and are 2025-12-09T17:02:14,228 already explicitly excluding 'multiqc.templates' via 2025-12-09T17:02:14,228 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,229 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,230 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,231 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,231 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,233 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,233 even if it does not contain any `.py` files. 2025-12-09T17:02:14,234 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,234 directory, all directories are treated like packages. 2025-12-09T17:02:14,234 ******************************************************************************** 2025-12-09T17:02:14,235 !! 2025-12-09T17:02:14,236 check.warn(importable) 2025-12-09T17:02:14,236 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default' is absent from the `packages` configuration. 2025-12-09T17:02:14,237 !! 2025-12-09T17:02:14,238 ******************************************************************************** 2025-12-09T17:02:14,238 ############################ 2025-12-09T17:02:14,239 # Package would be ignored # 2025-12-09T17:02:14,240 ############################ 2025-12-09T17:02:14,240 Python recognizes 'multiqc.templates.default' as an importable package[^1], 2025-12-09T17:02:14,241 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,241 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,242 package, please make sure that 'multiqc.templates.default' is explicitly added 2025-12-09T17:02:14,242 to the `packages` configuration field. 2025-12-09T17:02:14,243 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,243 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,243 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,244 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,245 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,245 If you don't want 'multiqc.templates.default' to be distributed and are 2025-12-09T17:02:14,246 already explicitly excluding 'multiqc.templates.default' via 2025-12-09T17:02:14,246 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,246 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,247 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,248 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,249 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,250 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,251 even if it does not contain any `.py` files. 2025-12-09T17:02:14,251 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,252 directory, all directories are treated like packages. 2025-12-09T17:02:14,252 ******************************************************************************** 2025-12-09T17:02:14,253 !! 2025-12-09T17:02:14,254 check.warn(importable) 2025-12-09T17:02:14,254 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.assets.img' is absent from the `packages` configuration. 2025-12-09T17:02:14,255 !! 2025-12-09T17:02:14,256 ******************************************************************************** 2025-12-09T17:02:14,256 ############################ 2025-12-09T17:02:14,256 # Package would be ignored # 2025-12-09T17:02:14,257 ############################ 2025-12-09T17:02:14,257 Python recognizes 'multiqc.templates.default.assets.img' as an importable package[^1], 2025-12-09T17:02:14,258 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,259 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,259 package, please make sure that 'multiqc.templates.default.assets.img' is explicitly added 2025-12-09T17:02:14,260 to the `packages` configuration field. 2025-12-09T17:02:14,261 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,261 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,262 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,263 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,264 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,266 If you don't want 'multiqc.templates.default.assets.img' to be distributed and are 2025-12-09T17:02:14,266 already explicitly excluding 'multiqc.templates.default.assets.img' via 2025-12-09T17:02:14,266 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,267 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,267 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,268 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,268 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,269 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,270 even if it does not contain any `.py` files. 2025-12-09T17:02:14,270 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,271 directory, all directories are treated like packages. 2025-12-09T17:02:14,271 ******************************************************************************** 2025-12-09T17:02:14,272 !! 2025-12-09T17:02:14,272 check.warn(importable) 2025-12-09T17:02:14,272 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.assets.js.packages' is absent from the `packages` configuration. 2025-12-09T17:02:14,273 !! 2025-12-09T17:02:14,273 ******************************************************************************** 2025-12-09T17:02:14,274 ############################ 2025-12-09T17:02:14,274 # Package would be ignored # 2025-12-09T17:02:14,275 ############################ 2025-12-09T17:02:14,275 Python recognizes 'multiqc.templates.default.assets.js.packages' as an importable package[^1], 2025-12-09T17:02:14,275 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,276 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,277 package, please make sure that 'multiqc.templates.default.assets.js.packages' is explicitly added 2025-12-09T17:02:14,277 to the `packages` configuration field. 2025-12-09T17:02:14,278 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,279 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,279 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,280 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,281 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,282 If you don't want 'multiqc.templates.default.assets.js.packages' to be distributed and are 2025-12-09T17:02:14,283 already explicitly excluding 'multiqc.templates.default.assets.js.packages' via 2025-12-09T17:02:14,283 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,283 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,284 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,285 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,286 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,288 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,288 even if it does not contain any `.py` files. 2025-12-09T17:02:14,289 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,289 directory, all directories are treated like packages. 2025-12-09T17:02:14,290 ******************************************************************************** 2025-12-09T17:02:14,291 !! 2025-12-09T17:02:14,291 check.warn(importable) 2025-12-09T17:02:14,291 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.compiled.css' is absent from the `packages` configuration. 2025-12-09T17:02:14,292 !! 2025-12-09T17:02:14,292 ******************************************************************************** 2025-12-09T17:02:14,293 ############################ 2025-12-09T17:02:14,293 # Package would be ignored # 2025-12-09T17:02:14,293 ############################ 2025-12-09T17:02:14,294 Python recognizes 'multiqc.templates.default.compiled.css' as an importable package[^1], 2025-12-09T17:02:14,294 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,295 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,295 package, please make sure that 'multiqc.templates.default.compiled.css' is explicitly added 2025-12-09T17:02:14,296 to the `packages` configuration field. 2025-12-09T17:02:14,296 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,297 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,297 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,298 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,299 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,300 If you don't want 'multiqc.templates.default.compiled.css' to be distributed and are 2025-12-09T17:02:14,300 already explicitly excluding 'multiqc.templates.default.compiled.css' via 2025-12-09T17:02:14,301 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,301 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,302 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,303 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,304 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,305 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,306 even if it does not contain any `.py` files. 2025-12-09T17:02:14,307 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,307 directory, all directories are treated like packages. 2025-12-09T17:02:14,307 ******************************************************************************** 2025-12-09T17:02:14,308 !! 2025-12-09T17:02:14,309 check.warn(importable) 2025-12-09T17:02:14,309 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.compiled.js' is absent from the `packages` configuration. 2025-12-09T17:02:14,309 !! 2025-12-09T17:02:14,310 ******************************************************************************** 2025-12-09T17:02:14,311 ############################ 2025-12-09T17:02:14,311 # Package would be ignored # 2025-12-09T17:02:14,312 ############################ 2025-12-09T17:02:14,312 Python recognizes 'multiqc.templates.default.compiled.js' as an importable package[^1], 2025-12-09T17:02:14,313 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,314 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,314 package, please make sure that 'multiqc.templates.default.compiled.js' is explicitly added 2025-12-09T17:02:14,315 to the `packages` configuration field. 2025-12-09T17:02:14,316 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,316 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,316 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,317 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,318 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,318 If you don't want 'multiqc.templates.default.compiled.js' to be distributed and are 2025-12-09T17:02:14,319 already explicitly excluding 'multiqc.templates.default.compiled.js' via 2025-12-09T17:02:14,319 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,319 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,320 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,321 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,321 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,323 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,323 even if it does not contain any `.py` files. 2025-12-09T17:02:14,323 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,324 directory, all directories are treated like packages. 2025-12-09T17:02:14,324 ******************************************************************************** 2025-12-09T17:02:14,325 !! 2025-12-09T17:02:14,325 check.warn(importable) 2025-12-09T17:02:14,326 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.src.js' is absent from the `packages` configuration. 2025-12-09T17:02:14,326 !! 2025-12-09T17:02:14,327 ******************************************************************************** 2025-12-09T17:02:14,328 ############################ 2025-12-09T17:02:14,330 # Package would be ignored # 2025-12-09T17:02:14,331 ############################ 2025-12-09T17:02:14,331 Python recognizes 'multiqc.templates.default.src.js' as an importable package[^1], 2025-12-09T17:02:14,332 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,333 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,333 package, please make sure that 'multiqc.templates.default.src.js' is explicitly added 2025-12-09T17:02:14,334 to the `packages` configuration field. 2025-12-09T17:02:14,335 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,336 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,337 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,337 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,339 If you don't want 'multiqc.templates.default.src.js' to be distributed and are 2025-12-09T17:02:14,339 already explicitly excluding 'multiqc.templates.default.src.js' via 2025-12-09T17:02:14,340 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,340 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,341 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,342 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,343 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,344 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,344 even if it does not contain any `.py` files. 2025-12-09T17:02:14,344 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,345 directory, all directories are treated like packages. 2025-12-09T17:02:14,345 ******************************************************************************** 2025-12-09T17:02:14,346 !! 2025-12-09T17:02:14,346 check.warn(importable) 2025-12-09T17:02:14,347 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.src.js.plots' is absent from the `packages` configuration. 2025-12-09T17:02:14,347 !! 2025-12-09T17:02:14,348 ******************************************************************************** 2025-12-09T17:02:14,348 ############################ 2025-12-09T17:02:14,349 # Package would be ignored # 2025-12-09T17:02:14,349 ############################ 2025-12-09T17:02:14,350 Python recognizes 'multiqc.templates.default.src.js.plots' as an importable package[^1], 2025-12-09T17:02:14,350 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,351 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,351 package, please make sure that 'multiqc.templates.default.src.js.plots' is explicitly added 2025-12-09T17:02:14,352 to the `packages` configuration field. 2025-12-09T17:02:14,353 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,353 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,354 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,355 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,356 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,357 If you don't want 'multiqc.templates.default.src.js.plots' to be distributed and are 2025-12-09T17:02:14,357 already explicitly excluding 'multiqc.templates.default.src.js.plots' via 2025-12-09T17:02:14,358 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,358 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,359 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,360 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,361 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,362 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,363 even if it does not contain any `.py` files. 2025-12-09T17:02:14,363 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,364 directory, all directories are treated like packages. 2025-12-09T17:02:14,364 ******************************************************************************** 2025-12-09T17:02:14,365 !! 2025-12-09T17:02:14,366 check.warn(importable) 2025-12-09T17:02:14,366 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.src.js.toolbox' is absent from the `packages` configuration. 2025-12-09T17:02:14,367 !! 2025-12-09T17:02:14,368 ******************************************************************************** 2025-12-09T17:02:14,368 ############################ 2025-12-09T17:02:14,369 # Package would be ignored # 2025-12-09T17:02:14,369 ############################ 2025-12-09T17:02:14,369 Python recognizes 'multiqc.templates.default.src.js.toolbox' as an importable package[^1], 2025-12-09T17:02:14,370 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,370 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,371 package, please make sure that 'multiqc.templates.default.src.js.toolbox' is explicitly added 2025-12-09T17:02:14,371 to the `packages` configuration field. 2025-12-09T17:02:14,372 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,372 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,373 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,373 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,374 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,375 If you don't want 'multiqc.templates.default.src.js.toolbox' to be distributed and are 2025-12-09T17:02:14,375 already explicitly excluding 'multiqc.templates.default.src.js.toolbox' via 2025-12-09T17:02:14,376 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,376 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,377 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,378 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,379 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,381 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,382 even if it does not contain any `.py` files. 2025-12-09T17:02:14,382 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,383 directory, all directories are treated like packages. 2025-12-09T17:02:14,383 ******************************************************************************** 2025-12-09T17:02:14,384 !! 2025-12-09T17:02:14,385 check.warn(importable) 2025-12-09T17:02:14,385 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.src.scss' is absent from the `packages` configuration. 2025-12-09T17:02:14,386 !! 2025-12-09T17:02:14,387 ******************************************************************************** 2025-12-09T17:02:14,387 ############################ 2025-12-09T17:02:14,388 # Package would be ignored # 2025-12-09T17:02:14,388 ############################ 2025-12-09T17:02:14,389 Python recognizes 'multiqc.templates.default.src.scss' as an importable package[^1], 2025-12-09T17:02:14,389 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,390 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,391 package, please make sure that 'multiqc.templates.default.src.scss' is explicitly added 2025-12-09T17:02:14,391 to the `packages` configuration field. 2025-12-09T17:02:14,392 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,393 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,394 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,395 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,396 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,397 If you don't want 'multiqc.templates.default.src.scss' to be distributed and are 2025-12-09T17:02:14,397 already explicitly excluding 'multiqc.templates.default.src.scss' via 2025-12-09T17:02:14,397 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,398 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,398 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,399 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,400 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,401 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,401 even if it does not contain any `.py` files. 2025-12-09T17:02:14,402 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,402 directory, all directories are treated like packages. 2025-12-09T17:02:14,403 ******************************************************************************** 2025-12-09T17:02:14,404 !! 2025-12-09T17:02:14,404 check.warn(importable) 2025-12-09T17:02:14,405 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.src.scss.themes.dark' is absent from the `packages` configuration. 2025-12-09T17:02:14,406 !! 2025-12-09T17:02:14,407 ******************************************************************************** 2025-12-09T17:02:14,408 ############################ 2025-12-09T17:02:14,408 # Package would be ignored # 2025-12-09T17:02:14,409 ############################ 2025-12-09T17:02:14,409 Python recognizes 'multiqc.templates.default.src.scss.themes.dark' as an importable package[^1], 2025-12-09T17:02:14,410 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,411 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,412 package, please make sure that 'multiqc.templates.default.src.scss.themes.dark' is explicitly added 2025-12-09T17:02:14,412 to the `packages` configuration field. 2025-12-09T17:02:14,413 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,414 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,415 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,416 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,417 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,418 If you don't want 'multiqc.templates.default.src.scss.themes.dark' to be distributed and are 2025-12-09T17:02:14,418 already explicitly excluding 'multiqc.templates.default.src.scss.themes.dark' via 2025-12-09T17:02:14,419 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,419 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,420 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,421 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,422 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,424 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,424 even if it does not contain any `.py` files. 2025-12-09T17:02:14,425 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,425 directory, all directories are treated like packages. 2025-12-09T17:02:14,426 ******************************************************************************** 2025-12-09T17:02:14,426 !! 2025-12-09T17:02:14,427 check.warn(importable) 2025-12-09T17:02:14,427 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.default.toolbox' is absent from the `packages` configuration. 2025-12-09T17:02:14,428 !! 2025-12-09T17:02:14,428 ******************************************************************************** 2025-12-09T17:02:14,429 ############################ 2025-12-09T17:02:14,429 # Package would be ignored # 2025-12-09T17:02:14,429 ############################ 2025-12-09T17:02:14,430 Python recognizes 'multiqc.templates.default.toolbox' as an importable package[^1], 2025-12-09T17:02:14,430 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,431 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,431 package, please make sure that 'multiqc.templates.default.toolbox' is explicitly added 2025-12-09T17:02:14,432 to the `packages` configuration field. 2025-12-09T17:02:14,433 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,433 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,434 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,434 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,436 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,437 If you don't want 'multiqc.templates.default.toolbox' to be distributed and are 2025-12-09T17:02:14,437 already explicitly excluding 'multiqc.templates.default.toolbox' via 2025-12-09T17:02:14,438 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,438 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,439 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,440 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,441 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,443 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,443 even if it does not contain any `.py` files. 2025-12-09T17:02:14,444 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,444 directory, all directories are treated like packages. 2025-12-09T17:02:14,445 ******************************************************************************** 2025-12-09T17:02:14,446 !! 2025-12-09T17:02:14,446 check.warn(importable) 2025-12-09T17:02:14,447 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.disco' is absent from the `packages` configuration. 2025-12-09T17:02:14,447 !! 2025-12-09T17:02:14,448 ******************************************************************************** 2025-12-09T17:02:14,449 ############################ 2025-12-09T17:02:14,449 # Package would be ignored # 2025-12-09T17:02:14,450 ############################ 2025-12-09T17:02:14,450 Python recognizes 'multiqc.templates.disco' as an importable package[^1], 2025-12-09T17:02:14,451 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,452 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,452 package, please make sure that 'multiqc.templates.disco' is explicitly added 2025-12-09T17:02:14,453 to the `packages` configuration field. 2025-12-09T17:02:14,453 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,454 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,454 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,455 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,456 If you don't want 'multiqc.templates.disco' to be distributed and are 2025-12-09T17:02:14,457 already explicitly excluding 'multiqc.templates.disco' via 2025-12-09T17:02:14,457 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,458 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,458 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,459 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,460 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,461 even if it does not contain any `.py` files. 2025-12-09T17:02:14,461 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,462 directory, all directories are treated like packages. 2025-12-09T17:02:14,463 ******************************************************************************** 2025-12-09T17:02:14,464 !! 2025-12-09T17:02:14,464 check.warn(importable) 2025-12-09T17:02:14,464 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.disco.compiled.css' is absent from the `packages` configuration. 2025-12-09T17:02:14,465 !! 2025-12-09T17:02:14,466 ******************************************************************************** 2025-12-09T17:02:14,467 ############################ 2025-12-09T17:02:14,467 # Package would be ignored # 2025-12-09T17:02:14,467 ############################ 2025-12-09T17:02:14,468 Python recognizes 'multiqc.templates.disco.compiled.css' as an importable package[^1], 2025-12-09T17:02:14,468 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,470 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,470 package, please make sure that 'multiqc.templates.disco.compiled.css' is explicitly added 2025-12-09T17:02:14,470 to the `packages` configuration field. 2025-12-09T17:02:14,471 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,472 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,472 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,473 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,475 If you don't want 'multiqc.templates.disco.compiled.css' to be distributed and are 2025-12-09T17:02:14,476 already explicitly excluding 'multiqc.templates.disco.compiled.css' via 2025-12-09T17:02:14,477 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,477 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,478 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,479 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,480 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,481 even if it does not contain any `.py` files. 2025-12-09T17:02:14,482 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,482 directory, all directories are treated like packages. 2025-12-09T17:02:14,482 ******************************************************************************** 2025-12-09T17:02:14,483 !! 2025-12-09T17:02:14,484 check.warn(importable) 2025-12-09T17:02:14,484 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.disco.compiled.js' is absent from the `packages` configuration. 2025-12-09T17:02:14,485 !! 2025-12-09T17:02:14,486 ******************************************************************************** 2025-12-09T17:02:14,486 ############################ 2025-12-09T17:02:14,487 # Package would be ignored # 2025-12-09T17:02:14,487 ############################ 2025-12-09T17:02:14,488 Python recognizes 'multiqc.templates.disco.compiled.js' as an importable package[^1], 2025-12-09T17:02:14,488 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,489 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,490 package, please make sure that 'multiqc.templates.disco.compiled.js' is explicitly added 2025-12-09T17:02:14,490 to the `packages` configuration field. 2025-12-09T17:02:14,491 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,493 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,494 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,496 If you don't want 'multiqc.templates.disco.compiled.js' to be distributed and are 2025-12-09T17:02:14,497 already explicitly excluding 'multiqc.templates.disco.compiled.js' via 2025-12-09T17:02:14,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,498 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,498 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,499 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,500 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,502 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,503 even if it does not contain any `.py` files. 2025-12-09T17:02:14,503 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,504 directory, all directories are treated like packages. 2025-12-09T17:02:14,504 ******************************************************************************** 2025-12-09T17:02:14,505 !! 2025-12-09T17:02:14,506 check.warn(importable) 2025-12-09T17:02:14,506 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.disco.src.js' is absent from the `packages` configuration. 2025-12-09T17:02:14,507 !! 2025-12-09T17:02:14,508 ******************************************************************************** 2025-12-09T17:02:14,509 ############################ 2025-12-09T17:02:14,509 # Package would be ignored # 2025-12-09T17:02:14,509 ############################ 2025-12-09T17:02:14,510 Python recognizes 'multiqc.templates.disco.src.js' as an importable package[^1], 2025-12-09T17:02:14,510 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,511 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,511 package, please make sure that 'multiqc.templates.disco.src.js' is explicitly added 2025-12-09T17:02:14,512 to the `packages` configuration field. 2025-12-09T17:02:14,513 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,513 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,514 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,516 If you don't want 'multiqc.templates.disco.src.js' to be distributed and are 2025-12-09T17:02:14,517 already explicitly excluding 'multiqc.templates.disco.src.js' via 2025-12-09T17:02:14,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,518 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,519 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,523 even if it does not contain any `.py` files. 2025-12-09T17:02:14,523 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,524 directory, all directories are treated like packages. 2025-12-09T17:02:14,524 ******************************************************************************** 2025-12-09T17:02:14,526 !! 2025-12-09T17:02:14,526 check.warn(importable) 2025-12-09T17:02:14,527 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.disco.src.scss' is absent from the `packages` configuration. 2025-12-09T17:02:14,527 !! 2025-12-09T17:02:14,529 ******************************************************************************** 2025-12-09T17:02:14,529 ############################ 2025-12-09T17:02:14,530 # Package would be ignored # 2025-12-09T17:02:14,530 ############################ 2025-12-09T17:02:14,531 Python recognizes 'multiqc.templates.disco.src.scss' as an importable package[^1], 2025-12-09T17:02:14,532 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,533 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,533 package, please make sure that 'multiqc.templates.disco.src.scss' is explicitly added 2025-12-09T17:02:14,534 to the `packages` configuration field. 2025-12-09T17:02:14,535 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,536 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,537 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,538 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,539 If you don't want 'multiqc.templates.disco.src.scss' to be distributed and are 2025-12-09T17:02:14,539 already explicitly excluding 'multiqc.templates.disco.src.scss' via 2025-12-09T17:02:14,540 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,540 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,540 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,541 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,544 even if it does not contain any `.py` files. 2025-12-09T17:02:14,544 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,545 directory, all directories are treated like packages. 2025-12-09T17:02:14,545 ******************************************************************************** 2025-12-09T17:02:14,546 !! 2025-12-09T17:02:14,546 check.warn(importable) 2025-12-09T17:02:14,547 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.gathered' is absent from the `packages` configuration. 2025-12-09T17:02:14,547 !! 2025-12-09T17:02:14,548 ******************************************************************************** 2025-12-09T17:02:14,549 ############################ 2025-12-09T17:02:14,549 # Package would be ignored # 2025-12-09T17:02:14,550 ############################ 2025-12-09T17:02:14,550 Python recognizes 'multiqc.templates.gathered' as an importable package[^1], 2025-12-09T17:02:14,551 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,552 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,552 package, please make sure that 'multiqc.templates.gathered' is explicitly added 2025-12-09T17:02:14,553 to the `packages` configuration field. 2025-12-09T17:02:14,553 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,554 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,555 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,556 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,558 If you don't want 'multiqc.templates.gathered' to be distributed and are 2025-12-09T17:02:14,558 already explicitly excluding 'multiqc.templates.gathered' via 2025-12-09T17:02:14,559 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,559 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,560 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,561 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,562 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,563 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,564 even if it does not contain any `.py` files. 2025-12-09T17:02:14,564 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,565 directory, all directories are treated like packages. 2025-12-09T17:02:14,565 ******************************************************************************** 2025-12-09T17:02:14,566 !! 2025-12-09T17:02:14,566 check.warn(importable) 2025-12-09T17:02:14,567 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.geo' is absent from the `packages` configuration. 2025-12-09T17:02:14,567 !! 2025-12-09T17:02:14,568 ******************************************************************************** 2025-12-09T17:02:14,569 ############################ 2025-12-09T17:02:14,569 # Package would be ignored # 2025-12-09T17:02:14,569 ############################ 2025-12-09T17:02:14,570 Python recognizes 'multiqc.templates.geo' as an importable package[^1], 2025-12-09T17:02:14,570 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,571 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,572 package, please make sure that 'multiqc.templates.geo' is explicitly added 2025-12-09T17:02:14,572 to the `packages` configuration field. 2025-12-09T17:02:14,573 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,574 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,574 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,575 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,576 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,577 If you don't want 'multiqc.templates.geo' to be distributed and are 2025-12-09T17:02:14,578 already explicitly excluding 'multiqc.templates.geo' via 2025-12-09T17:02:14,579 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,581 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,582 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,583 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,585 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,586 even if it does not contain any `.py` files. 2025-12-09T17:02:14,587 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,588 directory, all directories are treated like packages. 2025-12-09T17:02:14,589 ******************************************************************************** 2025-12-09T17:02:14,590 !! 2025-12-09T17:02:14,591 check.warn(importable) 2025-12-09T17:02:14,591 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.geo.assets.css' is absent from the `packages` configuration. 2025-12-09T17:02:14,592 !! 2025-12-09T17:02:14,593 ******************************************************************************** 2025-12-09T17:02:14,594 ############################ 2025-12-09T17:02:14,595 # Package would be ignored # 2025-12-09T17:02:14,596 ############################ 2025-12-09T17:02:14,596 Python recognizes 'multiqc.templates.geo.assets.css' as an importable package[^1], 2025-12-09T17:02:14,597 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,599 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,600 package, please make sure that 'multiqc.templates.geo.assets.css' is explicitly added 2025-12-09T17:02:14,600 to the `packages` configuration field. 2025-12-09T17:02:14,601 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,602 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,602 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,603 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,604 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,605 If you don't want 'multiqc.templates.geo.assets.css' to be distributed and are 2025-12-09T17:02:14,606 already explicitly excluding 'multiqc.templates.geo.assets.css' via 2025-12-09T17:02:14,606 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,606 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,607 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,608 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,609 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,611 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,611 even if it does not contain any `.py` files. 2025-12-09T17:02:14,612 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,612 directory, all directories are treated like packages. 2025-12-09T17:02:14,613 ******************************************************************************** 2025-12-09T17:02:14,614 !! 2025-12-09T17:02:14,614 check.warn(importable) 2025-12-09T17:02:14,615 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.geo.assets.img' is absent from the `packages` configuration. 2025-12-09T17:02:14,615 !! 2025-12-09T17:02:14,616 ******************************************************************************** 2025-12-09T17:02:14,617 ############################ 2025-12-09T17:02:14,617 # Package would be ignored # 2025-12-09T17:02:14,618 ############################ 2025-12-09T17:02:14,618 Python recognizes 'multiqc.templates.geo.assets.img' as an importable package[^1], 2025-12-09T17:02:14,619 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,620 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,621 package, please make sure that 'multiqc.templates.geo.assets.img' is explicitly added 2025-12-09T17:02:14,622 to the `packages` configuration field. 2025-12-09T17:02:14,623 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,623 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,624 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,625 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,626 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,627 If you don't want 'multiqc.templates.geo.assets.img' to be distributed and are 2025-12-09T17:02:14,628 already explicitly excluding 'multiqc.templates.geo.assets.img' via 2025-12-09T17:02:14,628 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,629 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,629 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,631 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,632 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,633 even if it does not contain any `.py` files. 2025-12-09T17:02:14,634 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,634 directory, all directories are treated like packages. 2025-12-09T17:02:14,635 ******************************************************************************** 2025-12-09T17:02:14,636 !! 2025-12-09T17:02:14,637 check.warn(importable) 2025-12-09T17:02:14,637 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.original' is absent from the `packages` configuration. 2025-12-09T17:02:14,637 !! 2025-12-09T17:02:14,638 ******************************************************************************** 2025-12-09T17:02:14,639 ############################ 2025-12-09T17:02:14,639 # Package would be ignored # 2025-12-09T17:02:14,640 ############################ 2025-12-09T17:02:14,640 Python recognizes 'multiqc.templates.original' as an importable package[^1], 2025-12-09T17:02:14,641 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,642 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,643 package, please make sure that 'multiqc.templates.original' is explicitly added 2025-12-09T17:02:14,643 to the `packages` configuration field. 2025-12-09T17:02:14,644 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,645 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,645 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,647 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,648 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,649 If you don't want 'multiqc.templates.original' to be distributed and are 2025-12-09T17:02:14,649 already explicitly excluding 'multiqc.templates.original' via 2025-12-09T17:02:14,650 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,650 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,651 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,652 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,653 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,655 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,655 even if it does not contain any `.py` files. 2025-12-09T17:02:14,656 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,656 directory, all directories are treated like packages. 2025-12-09T17:02:14,657 ******************************************************************************** 2025-12-09T17:02:14,658 !! 2025-12-09T17:02:14,659 check.warn(importable) 2025-12-09T17:02:14,660 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.original.assets.css' is absent from the `packages` configuration. 2025-12-09T17:02:14,660 !! 2025-12-09T17:02:14,662 ******************************************************************************** 2025-12-09T17:02:14,662 ############################ 2025-12-09T17:02:14,663 # Package would be ignored # 2025-12-09T17:02:14,663 ############################ 2025-12-09T17:02:14,664 Python recognizes 'multiqc.templates.original.assets.css' as an importable package[^1], 2025-12-09T17:02:14,664 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,665 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,665 package, please make sure that 'multiqc.templates.original.assets.css' is explicitly added 2025-12-09T17:02:14,666 to the `packages` configuration field. 2025-12-09T17:02:14,667 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,668 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,668 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,669 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,671 If you don't want 'multiqc.templates.original.assets.css' to be distributed and are 2025-12-09T17:02:14,672 already explicitly excluding 'multiqc.templates.original.assets.css' via 2025-12-09T17:02:14,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,673 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,673 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,674 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,676 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,678 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,678 even if it does not contain any `.py` files. 2025-12-09T17:02:14,679 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,679 directory, all directories are treated like packages. 2025-12-09T17:02:14,680 ******************************************************************************** 2025-12-09T17:02:14,681 !! 2025-12-09T17:02:14,682 check.warn(importable) 2025-12-09T17:02:14,682 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.original.assets.fonts' is absent from the `packages` configuration. 2025-12-09T17:02:14,683 !! 2025-12-09T17:02:14,684 ******************************************************************************** 2025-12-09T17:02:14,685 ############################ 2025-12-09T17:02:14,685 # Package would be ignored # 2025-12-09T17:02:14,686 ############################ 2025-12-09T17:02:14,686 Python recognizes 'multiqc.templates.original.assets.fonts' as an importable package[^1], 2025-12-09T17:02:14,687 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,688 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,689 package, please make sure that 'multiqc.templates.original.assets.fonts' is explicitly added 2025-12-09T17:02:14,690 to the `packages` configuration field. 2025-12-09T17:02:14,691 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,692 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,693 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,695 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,696 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,697 If you don't want 'multiqc.templates.original.assets.fonts' to be distributed and are 2025-12-09T17:02:14,697 already explicitly excluding 'multiqc.templates.original.assets.fonts' via 2025-12-09T17:02:14,698 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,698 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,699 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,700 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,701 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,702 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,703 even if it does not contain any `.py` files. 2025-12-09T17:02:14,703 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,704 directory, all directories are treated like packages. 2025-12-09T17:02:14,704 ******************************************************************************** 2025-12-09T17:02:14,705 !! 2025-12-09T17:02:14,705 check.warn(importable) 2025-12-09T17:02:14,706 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.original.assets.img' is absent from the `packages` configuration. 2025-12-09T17:02:14,707 !! 2025-12-09T17:02:14,708 ******************************************************************************** 2025-12-09T17:02:14,708 ############################ 2025-12-09T17:02:14,709 # Package would be ignored # 2025-12-09T17:02:14,709 ############################ 2025-12-09T17:02:14,710 Python recognizes 'multiqc.templates.original.assets.img' as an importable package[^1], 2025-12-09T17:02:14,710 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,711 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,712 package, please make sure that 'multiqc.templates.original.assets.img' is explicitly added 2025-12-09T17:02:14,713 to the `packages` configuration field. 2025-12-09T17:02:14,714 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,714 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,715 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,716 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,717 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,718 If you don't want 'multiqc.templates.original.assets.img' to be distributed and are 2025-12-09T17:02:14,719 already explicitly excluding 'multiqc.templates.original.assets.img' via 2025-12-09T17:02:14,720 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,720 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,721 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,722 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,723 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,725 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,726 even if it does not contain any `.py` files. 2025-12-09T17:02:14,726 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,727 directory, all directories are treated like packages. 2025-12-09T17:02:14,727 ******************************************************************************** 2025-12-09T17:02:14,728 !! 2025-12-09T17:02:14,728 check.warn(importable) 2025-12-09T17:02:14,729 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.original.assets.js' is absent from the `packages` configuration. 2025-12-09T17:02:14,729 !! 2025-12-09T17:02:14,730 ******************************************************************************** 2025-12-09T17:02:14,731 ############################ 2025-12-09T17:02:14,731 # Package would be ignored # 2025-12-09T17:02:14,732 ############################ 2025-12-09T17:02:14,732 Python recognizes 'multiqc.templates.original.assets.js' as an importable package[^1], 2025-12-09T17:02:14,733 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,734 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,735 package, please make sure that 'multiqc.templates.original.assets.js' is explicitly added 2025-12-09T17:02:14,735 to the `packages` configuration field. 2025-12-09T17:02:14,736 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,737 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,737 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,738 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,739 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,741 If you don't want 'multiqc.templates.original.assets.js' to be distributed and are 2025-12-09T17:02:14,742 already explicitly excluding 'multiqc.templates.original.assets.js' via 2025-12-09T17:02:14,742 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,743 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,743 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,744 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,745 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,747 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,747 even if it does not contain any `.py` files. 2025-12-09T17:02:14,748 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,748 directory, all directories are treated like packages. 2025-12-09T17:02:14,749 ******************************************************************************** 2025-12-09T17:02:14,750 !! 2025-12-09T17:02:14,750 check.warn(importable) 2025-12-09T17:02:14,751 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.original.assets.js.packages' is absent from the `packages` configuration. 2025-12-09T17:02:14,751 !! 2025-12-09T17:02:14,752 ******************************************************************************** 2025-12-09T17:02:14,753 ############################ 2025-12-09T17:02:14,753 # Package would be ignored # 2025-12-09T17:02:14,754 ############################ 2025-12-09T17:02:14,754 Python recognizes 'multiqc.templates.original.assets.js.packages' as an importable package[^1], 2025-12-09T17:02:14,755 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,756 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,757 package, please make sure that 'multiqc.templates.original.assets.js.packages' is explicitly added 2025-12-09T17:02:14,757 to the `packages` configuration field. 2025-12-09T17:02:14,758 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,759 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,760 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,761 If you don't want 'multiqc.templates.original.assets.js.packages' to be distributed and are 2025-12-09T17:02:14,762 already explicitly excluding 'multiqc.templates.original.assets.js.packages' via 2025-12-09T17:02:14,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,763 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,764 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,767 even if it does not contain any `.py` files. 2025-12-09T17:02:14,767 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,768 directory, all directories are treated like packages. 2025-12-09T17:02:14,768 ******************************************************************************** 2025-12-09T17:02:14,769 !! 2025-12-09T17:02:14,770 check.warn(importable) 2025-12-09T17:02:14,770 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.original.assets.js.plots' is absent from the `packages` configuration. 2025-12-09T17:02:14,771 !! 2025-12-09T17:02:14,772 ******************************************************************************** 2025-12-09T17:02:14,772 ############################ 2025-12-09T17:02:14,773 # Package would be ignored # 2025-12-09T17:02:14,773 ############################ 2025-12-09T17:02:14,774 Python recognizes 'multiqc.templates.original.assets.js.plots' as an importable package[^1], 2025-12-09T17:02:14,774 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,775 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,776 package, please make sure that 'multiqc.templates.original.assets.js.plots' is explicitly added 2025-12-09T17:02:14,776 to the `packages` configuration field. 2025-12-09T17:02:14,777 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,778 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,779 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,780 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,782 If you don't want 'multiqc.templates.original.assets.js.plots' to be distributed and are 2025-12-09T17:02:14,782 already explicitly excluding 'multiqc.templates.original.assets.js.plots' via 2025-12-09T17:02:14,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,784 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,785 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,786 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,787 even if it does not contain any `.py` files. 2025-12-09T17:02:14,788 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,788 directory, all directories are treated like packages. 2025-12-09T17:02:14,788 ******************************************************************************** 2025-12-09T17:02:14,789 !! 2025-12-09T17:02:14,790 check.warn(importable) 2025-12-09T17:02:14,790 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.sections' is absent from the `packages` configuration. 2025-12-09T17:02:14,791 !! 2025-12-09T17:02:14,792 ******************************************************************************** 2025-12-09T17:02:14,792 ############################ 2025-12-09T17:02:14,793 # Package would be ignored # 2025-12-09T17:02:14,793 ############################ 2025-12-09T17:02:14,794 Python recognizes 'multiqc.templates.sections' as an importable package[^1], 2025-12-09T17:02:14,794 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,795 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,796 package, please make sure that 'multiqc.templates.sections' is explicitly added 2025-12-09T17:02:14,796 to the `packages` configuration field. 2025-12-09T17:02:14,797 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,797 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,798 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,799 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,800 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,801 If you don't want 'multiqc.templates.sections' to be distributed and are 2025-12-09T17:02:14,801 already explicitly excluding 'multiqc.templates.sections' via 2025-12-09T17:02:14,802 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,802 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,803 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,804 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,805 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,806 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,807 even if it does not contain any `.py` files. 2025-12-09T17:02:14,807 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,808 directory, all directories are treated like packages. 2025-12-09T17:02:14,808 ******************************************************************************** 2025-12-09T17:02:14,809 !! 2025-12-09T17:02:14,810 check.warn(importable) 2025-12-09T17:02:14,810 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.templates.simple' is absent from the `packages` configuration. 2025-12-09T17:02:14,811 !! 2025-12-09T17:02:14,812 ******************************************************************************** 2025-12-09T17:02:14,812 ############################ 2025-12-09T17:02:14,813 # Package would be ignored # 2025-12-09T17:02:14,813 ############################ 2025-12-09T17:02:14,813 Python recognizes 'multiqc.templates.simple' as an importable package[^1], 2025-12-09T17:02:14,814 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,815 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,815 package, please make sure that 'multiqc.templates.simple' is explicitly added 2025-12-09T17:02:14,816 to the `packages` configuration field. 2025-12-09T17:02:14,816 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,817 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,818 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,819 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,820 If you don't want 'multiqc.templates.simple' to be distributed and are 2025-12-09T17:02:14,820 already explicitly excluding 'multiqc.templates.simple' via 2025-12-09T17:02:14,821 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,822 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,823 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,824 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,825 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,825 even if it does not contain any `.py` files. 2025-12-09T17:02:14,826 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,826 directory, all directories are treated like packages. 2025-12-09T17:02:14,827 ******************************************************************************** 2025-12-09T17:02:14,828 !! 2025-12-09T17:02:14,828 check.warn(importable) 2025-12-09T17:02:14,829 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.utils' is absent from the `packages` configuration. 2025-12-09T17:02:14,829 !! 2025-12-09T17:02:14,830 ******************************************************************************** 2025-12-09T17:02:14,831 ############################ 2025-12-09T17:02:14,831 # Package would be ignored # 2025-12-09T17:02:14,832 ############################ 2025-12-09T17:02:14,832 Python recognizes 'multiqc.utils' as an importable package[^1], 2025-12-09T17:02:14,833 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,834 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,834 package, please make sure that 'multiqc.utils' is explicitly added 2025-12-09T17:02:14,835 to the `packages` configuration field. 2025-12-09T17:02:14,836 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,837 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,838 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,839 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,840 If you don't want 'multiqc.utils' to be distributed and are 2025-12-09T17:02:14,840 already explicitly excluding 'multiqc.utils' via 2025-12-09T17:02:14,841 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,841 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,842 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,843 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,845 even if it does not contain any `.py` files. 2025-12-09T17:02:14,846 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,846 directory, all directories are treated like packages. 2025-12-09T17:02:14,846 ******************************************************************************** 2025-12-09T17:02:14,847 !! 2025-12-09T17:02:14,848 check.warn(importable) 2025-12-09T17:02:14,848 /tmp/pip-build-env-2nafgrvo/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'multiqc.utils.material_icons' is absent from the `packages` configuration. 2025-12-09T17:02:14,849 !! 2025-12-09T17:02:14,850 ******************************************************************************** 2025-12-09T17:02:14,850 ############################ 2025-12-09T17:02:14,850 # Package would be ignored # 2025-12-09T17:02:14,851 ############################ 2025-12-09T17:02:14,851 Python recognizes 'multiqc.utils.material_icons' as an importable package[^1], 2025-12-09T17:02:14,852 but it is absent from setuptools' `packages` configuration. 2025-12-09T17:02:14,853 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-09T17:02:14,853 package, please make sure that 'multiqc.utils.material_icons' is explicitly added 2025-12-09T17:02:14,854 to the `packages` configuration field. 2025-12-09T17:02:14,855 Alternatively, you can also rely on setuptools' discovery methods 2025-12-09T17:02:14,855 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-09T17:02:14,856 instead of `find_packages(...)`/`find:`). 2025-12-09T17:02:14,857 You can read more about "package discovery" on setuptools documentation page: 2025-12-09T17:02:14,858 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-09T17:02:14,859 If you don't want 'multiqc.utils.material_icons' to be distributed and are 2025-12-09T17:02:14,860 already explicitly excluding 'multiqc.utils.material_icons' via 2025-12-09T17:02:14,860 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-09T17:02:14,861 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-09T17:02:14,861 combination with a more fine grained `package-data` configuration. 2025-12-09T17:02:14,862 You can read more about "package data files" on setuptools documentation page: 2025-12-09T17:02:14,863 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-09T17:02:14,865 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-09T17:02:14,866 even if it does not contain any `.py` files. 2025-12-09T17:02:14,866 On the other hand, currently there is no concept of package data 2025-12-09T17:02:14,867 directory, all directories are treated like packages. 2025-12-09T17:02:14,868 ******************************************************************************** 2025-12-09T17:02:14,868 !! 2025-12-09T17:02:14,869 check.warn(importable) 2025-12-09T17:02:14,869 copying multiqc/config_defaults.yaml -> build/lib/multiqc 2025-12-09T17:02:14,870 copying multiqc/py.typed -> build/lib/multiqc 2025-12-09T17:02:14,870 copying multiqc/search_patterns.yaml -> build/lib/multiqc 2025-12-09T17:02:14,871 creating build/lib/multiqc/core 2025-12-09T17:02:14,871 copying multiqc/core/__init__.py -> build/lib/multiqc/core 2025-12-09T17:02:14,872 copying multiqc/core/ai.py -> build/lib/multiqc/core 2025-12-09T17:02:14,872 copying multiqc/core/config_check.py -> build/lib/multiqc/core 2025-12-09T17:02:14,873 copying multiqc/core/exceptions.py -> build/lib/multiqc/core 2025-12-09T17:02:14,873 copying multiqc/core/exec_modules.py -> build/lib/multiqc/core 2025-12-09T17:02:14,874 copying multiqc/core/file_search.py -> build/lib/multiqc/core 2025-12-09T17:02:14,874 copying multiqc/core/log_and_rich.py -> build/lib/multiqc/core 2025-12-09T17:02:14,875 copying multiqc/core/order_modules_and_sections.py -> build/lib/multiqc/core 2025-12-09T17:02:14,875 copying multiqc/core/plot_data_store.py -> build/lib/multiqc/core 2025-12-09T17:02:14,876 copying multiqc/core/plugin_hooks.py -> build/lib/multiqc/core 2025-12-09T17:02:14,877 copying multiqc/core/software_versions.py -> build/lib/multiqc/core 2025-12-09T17:02:14,877 copying multiqc/core/strict_helpers.py -> build/lib/multiqc/core 2025-12-09T17:02:14,878 copying multiqc/core/tmp_dir.py -> build/lib/multiqc/core 2025-12-09T17:02:14,878 copying multiqc/core/update_config.py -> build/lib/multiqc/core 2025-12-09T17:02:14,879 copying multiqc/core/version_check.py -> build/lib/multiqc/core 2025-12-09T17:02:14,879 copying multiqc/core/write_results.py -> build/lib/multiqc/core 2025-12-09T17:02:14,880 creating build/lib/multiqc/core/special_case_modules 2025-12-09T17:02:14,880 copying multiqc/core/special_case_modules/custom_content.py -> build/lib/multiqc/core/special_case_modules 2025-12-09T17:02:14,881 copying multiqc/core/special_case_modules/load_multiqc_data.py -> build/lib/multiqc/core/special_case_modules 2025-12-09T17:02:14,881 copying multiqc/core/special_case_modules/profile_runtime.py -> build/lib/multiqc/core/special_case_modules 2025-12-09T17:02:14,882 copying multiqc/core/special_case_modules/software_versions.py -> build/lib/multiqc/core/special_case_modules 2025-12-09T17:02:14,882 creating build/lib/multiqc/modules 2025-12-09T17:02:14,883 copying multiqc/modules/__init__.py -> build/lib/multiqc/modules 2025-12-09T17:02:14,884 creating build/lib/multiqc/modules/adapterremoval 2025-12-09T17:02:14,884 copying multiqc/modules/adapterremoval/__init__.py -> build/lib/multiqc/modules/adapterremoval 2025-12-09T17:02:14,885 copying multiqc/modules/adapterremoval/adapterremoval.py -> build/lib/multiqc/modules/adapterremoval 2025-12-09T17:02:14,885 creating build/lib/multiqc/modules/afterqc 2025-12-09T17:02:14,886 copying multiqc/modules/afterqc/__init__.py -> build/lib/multiqc/modules/afterqc 2025-12-09T17:02:14,886 copying multiqc/modules/afterqc/afterqc.py -> build/lib/multiqc/modules/afterqc 2025-12-09T17:02:14,887 creating build/lib/multiqc/modules/anglerfish 2025-12-09T17:02:14,887 copying multiqc/modules/anglerfish/__init__.py -> build/lib/multiqc/modules/anglerfish 2025-12-09T17:02:14,888 copying multiqc/modules/anglerfish/anglerfish.py -> build/lib/multiqc/modules/anglerfish 2025-12-09T17:02:14,888 creating build/lib/multiqc/modules/ataqv 2025-12-09T17:02:14,889 copying multiqc/modules/ataqv/__init__.py -> build/lib/multiqc/modules/ataqv 2025-12-09T17:02:14,889 copying multiqc/modules/ataqv/ataqv.py -> build/lib/multiqc/modules/ataqv 2025-12-09T17:02:14,890 creating build/lib/multiqc/modules/bakta 2025-12-09T17:02:14,891 copying multiqc/modules/bakta/__init__.py -> build/lib/multiqc/modules/bakta 2025-12-09T17:02:14,891 copying multiqc/modules/bakta/bakta.py -> build/lib/multiqc/modules/bakta 2025-12-09T17:02:14,891 creating build/lib/multiqc/modules/bamdst 2025-12-09T17:02:14,892 copying multiqc/modules/bamdst/__init__.py -> build/lib/multiqc/modules/bamdst 2025-12-09T17:02:14,892 copying multiqc/modules/bamdst/bamdst.py -> build/lib/multiqc/modules/bamdst 2025-12-09T17:02:14,893 creating build/lib/multiqc/modules/bamtools 2025-12-09T17:02:14,893 copying multiqc/modules/bamtools/__init__.py -> build/lib/multiqc/modules/bamtools 2025-12-09T17:02:14,893 copying multiqc/modules/bamtools/bamtools.py -> build/lib/multiqc/modules/bamtools 2025-12-09T17:02:14,894 copying multiqc/modules/bamtools/stats.py -> build/lib/multiqc/modules/bamtools 2025-12-09T17:02:14,894 creating build/lib/multiqc/modules/bases2fastq 2025-12-09T17:02:14,895 copying multiqc/modules/bases2fastq/__init__.py -> build/lib/multiqc/modules/bases2fastq 2025-12-09T17:02:14,895 copying multiqc/modules/bases2fastq/bases2fastq.py -> build/lib/multiqc/modules/bases2fastq 2025-12-09T17:02:14,895 copying multiqc/modules/bases2fastq/plot_project_runs.py -> build/lib/multiqc/modules/bases2fastq 2025-12-09T17:02:14,896 copying multiqc/modules/bases2fastq/plot_runs.py -> build/lib/multiqc/modules/bases2fastq 2025-12-09T17:02:14,896 copying multiqc/modules/bases2fastq/plot_samples.py -> build/lib/multiqc/modules/bases2fastq 2025-12-09T17:02:14,897 creating build/lib/multiqc/modules/bbduk 2025-12-09T17:02:14,897 copying multiqc/modules/bbduk/__init__.py -> build/lib/multiqc/modules/bbduk 2025-12-09T17:02:14,898 copying multiqc/modules/bbduk/bbduk.py -> build/lib/multiqc/modules/bbduk 2025-12-09T17:02:14,899 creating build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,899 copying multiqc/modules/bbmap/__init__.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,900 copying multiqc/modules/bbmap/bbmap.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,901 copying multiqc/modules/bbmap/bbmap_filetypes.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,901 copying multiqc/modules/bbmap/plot_aqhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,902 copying multiqc/modules/bbmap/plot_basic_hist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,902 copying multiqc/modules/bbmap/plot_bbsplit.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,903 copying multiqc/modules/bbmap/plot_bhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,904 copying multiqc/modules/bbmap/plot_bqhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,904 copying multiqc/modules/bbmap/plot_covhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,905 copying multiqc/modules/bbmap/plot_idhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,905 copying multiqc/modules/bbmap/plot_ihist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,906 copying multiqc/modules/bbmap/plot_indelhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,906 copying multiqc/modules/bbmap/plot_mhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,907 copying multiqc/modules/bbmap/plot_qahist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,907 copying multiqc/modules/bbmap/plot_qchist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,908 copying multiqc/modules/bbmap/plot_qhist.py -> build/lib/multiqc/modules/bbmap 2025-12-09T17:02:14,908 creating build/lib/multiqc/modules/bcftools 2025-12-09T17:02:14,909 copying multiqc/modules/bcftools/__init__.py -> build/lib/multiqc/modules/bcftools 2025-12-09T17:02:14,909 copying multiqc/modules/bcftools/bcftools.py -> build/lib/multiqc/modules/bcftools 2025-12-09T17:02:14,910 copying multiqc/modules/bcftools/stats.py -> build/lib/multiqc/modules/bcftools 2025-12-09T17:02:14,910 creating build/lib/multiqc/modules/bcl2fastq 2025-12-09T17:02:14,911 copying multiqc/modules/bcl2fastq/__init__.py -> build/lib/multiqc/modules/bcl2fastq 2025-12-09T17:02:14,912 copying multiqc/modules/bcl2fastq/bcl2fastq.py -> build/lib/multiqc/modules/bcl2fastq 2025-12-09T17:02:14,912 creating build/lib/multiqc/modules/bclconvert 2025-12-09T17:02:14,912 copying multiqc/modules/bclconvert/__init__.py -> build/lib/multiqc/modules/bclconvert 2025-12-09T17:02:14,913 copying multiqc/modules/bclconvert/bclconvert.py -> build/lib/multiqc/modules/bclconvert 2025-12-09T17:02:14,913 creating build/lib/multiqc/modules/biobambam2 2025-12-09T17:02:14,914 copying multiqc/modules/biobambam2/__init__.py -> build/lib/multiqc/modules/biobambam2 2025-12-09T17:02:14,914 copying multiqc/modules/biobambam2/biobambam2.py -> build/lib/multiqc/modules/biobambam2 2025-12-09T17:02:14,915 creating build/lib/multiqc/modules/biobloomtools 2025-12-09T17:02:14,915 copying multiqc/modules/biobloomtools/__init__.py -> build/lib/multiqc/modules/biobloomtools 2025-12-09T17:02:14,915 copying multiqc/modules/biobloomtools/biobloomtools.py -> build/lib/multiqc/modules/biobloomtools 2025-12-09T17:02:14,916 creating build/lib/multiqc/modules/biscuit 2025-12-09T17:02:14,916 copying multiqc/modules/biscuit/__init__.py -> build/lib/multiqc/modules/biscuit 2025-12-09T17:02:14,917 copying multiqc/modules/biscuit/biscuit.py -> build/lib/multiqc/modules/biscuit 2025-12-09T17:02:14,917 creating build/lib/multiqc/modules/biscuit/tests 2025-12-09T17:02:14,918 copying multiqc/modules/biscuit/tests/__init__.py -> build/lib/multiqc/modules/biscuit/tests 2025-12-09T17:02:14,918 copying multiqc/modules/biscuit/tests/test_biscuit.py -> build/lib/multiqc/modules/biscuit/tests 2025-12-09T17:02:14,918 creating build/lib/multiqc/modules/bismark 2025-12-09T17:02:14,919 copying multiqc/modules/bismark/__init__.py -> build/lib/multiqc/modules/bismark 2025-12-09T17:02:14,919 copying multiqc/modules/bismark/bismark.py -> build/lib/multiqc/modules/bismark 2025-12-09T17:02:14,920 creating build/lib/multiqc/modules/bowtie1 2025-12-09T17:02:14,920 copying multiqc/modules/bowtie1/__init__.py -> build/lib/multiqc/modules/bowtie1 2025-12-09T17:02:14,921 copying multiqc/modules/bowtie1/bowtie1.py -> build/lib/multiqc/modules/bowtie1 2025-12-09T17:02:14,921 creating build/lib/multiqc/modules/bowtie2 2025-12-09T17:02:14,922 copying multiqc/modules/bowtie2/__init__.py -> build/lib/multiqc/modules/bowtie2 2025-12-09T17:02:14,922 copying multiqc/modules/bowtie2/bowtie2.py -> build/lib/multiqc/modules/bowtie2 2025-12-09T17:02:14,923 creating build/lib/multiqc/modules/busco 2025-12-09T17:02:14,923 copying multiqc/modules/busco/__init__.py -> build/lib/multiqc/modules/busco 2025-12-09T17:02:14,924 copying multiqc/modules/busco/busco.py -> build/lib/multiqc/modules/busco 2025-12-09T17:02:14,924 creating build/lib/multiqc/modules/bustools 2025-12-09T17:02:14,925 copying multiqc/modules/bustools/__init__.py -> build/lib/multiqc/modules/bustools 2025-12-09T17:02:14,925 copying multiqc/modules/bustools/bustools.py -> build/lib/multiqc/modules/bustools 2025-12-09T17:02:14,926 creating build/lib/multiqc/modules/ccs 2025-12-09T17:02:14,926 copying multiqc/modules/ccs/__init__.py -> build/lib/multiqc/modules/ccs 2025-12-09T17:02:14,927 copying multiqc/modules/ccs/ccs.py -> build/lib/multiqc/modules/ccs 2025-12-09T17:02:14,927 creating build/lib/multiqc/modules/ccs/tests 2025-12-09T17:02:14,928 copying multiqc/modules/ccs/tests/__init__.py -> build/lib/multiqc/modules/ccs/tests 2025-12-09T17:02:14,928 copying multiqc/modules/ccs/tests/test_ccs.py -> build/lib/multiqc/modules/ccs/tests 2025-12-09T17:02:14,929 creating build/lib/multiqc/modules/cellranger 2025-12-09T17:02:14,930 copying multiqc/modules/cellranger/__init__.py -> build/lib/multiqc/modules/cellranger 2025-12-09T17:02:14,930 copying multiqc/modules/cellranger/cellranger.py -> build/lib/multiqc/modules/cellranger 2025-12-09T17:02:14,931 copying multiqc/modules/cellranger/count.py -> build/lib/multiqc/modules/cellranger 2025-12-09T17:02:14,931 copying multiqc/modules/cellranger/utils.py -> build/lib/multiqc/modules/cellranger 2025-12-09T17:02:14,932 copying multiqc/modules/cellranger/vdj.py -> build/lib/multiqc/modules/cellranger 2025-12-09T17:02:14,932 creating build/lib/multiqc/modules/cellranger_arc 2025-12-09T17:02:14,933 copying multiqc/modules/cellranger_arc/__init__.py -> build/lib/multiqc/modules/cellranger_arc 2025-12-09T17:02:14,934 copying multiqc/modules/cellranger_arc/cellranger_arc.py -> build/lib/multiqc/modules/cellranger_arc 2025-12-09T17:02:14,934 copying multiqc/modules/cellranger_arc/utils.py -> build/lib/multiqc/modules/cellranger_arc 2025-12-09T17:02:14,934 creating build/lib/multiqc/modules/cellranger_arc/tests 2025-12-09T17:02:14,935 copying multiqc/modules/cellranger_arc/tests/__init__.py -> build/lib/multiqc/modules/cellranger_arc/tests 2025-12-09T17:02:14,935 copying multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py -> build/lib/multiqc/modules/cellranger_arc/tests 2025-12-09T17:02:14,936 creating build/lib/multiqc/modules/cells2stats 2025-12-09T17:02:14,936 copying multiqc/modules/cells2stats/__init__.py -> build/lib/multiqc/modules/cells2stats 2025-12-09T17:02:14,937 copying multiqc/modules/cells2stats/cells2stats.py -> build/lib/multiqc/modules/cells2stats 2025-12-09T17:02:14,937 copying multiqc/modules/cells2stats/cells2stats_bar_plots.py -> build/lib/multiqc/modules/cells2stats 2025-12-09T17:02:14,937 copying multiqc/modules/cells2stats/cells2stats_tables.py -> build/lib/multiqc/modules/cells2stats 2025-12-09T17:02:14,938 copying multiqc/modules/cells2stats/queries.py -> build/lib/multiqc/modules/cells2stats 2025-12-09T17:02:14,938 copying multiqc/modules/cells2stats/utils.py -> build/lib/multiqc/modules/cells2stats 2025-12-09T17:02:14,939 creating build/lib/multiqc/modules/checkm 2025-12-09T17:02:14,939 copying multiqc/modules/checkm/__init__.py -> build/lib/multiqc/modules/checkm 2025-12-09T17:02:14,940 copying multiqc/modules/checkm/checkm.py -> build/lib/multiqc/modules/checkm 2025-12-09T17:02:14,940 creating build/lib/multiqc/modules/checkm2 2025-12-09T17:02:14,941 copying multiqc/modules/checkm2/__init__.py -> build/lib/multiqc/modules/checkm2 2025-12-09T17:02:14,941 copying multiqc/modules/checkm2/checkm2.py -> build/lib/multiqc/modules/checkm2 2025-12-09T17:02:14,942 creating build/lib/multiqc/modules/checkqc 2025-12-09T17:02:14,942 copying multiqc/modules/checkqc/__init__.py -> build/lib/multiqc/modules/checkqc 2025-12-09T17:02:14,943 copying multiqc/modules/checkqc/checkqc.py -> build/lib/multiqc/modules/checkqc 2025-12-09T17:02:14,943 creating build/lib/multiqc/modules/clipandmerge 2025-12-09T17:02:14,944 copying multiqc/modules/clipandmerge/__init__.py -> build/lib/multiqc/modules/clipandmerge 2025-12-09T17:02:14,944 copying multiqc/modules/clipandmerge/clipandmerge.py -> build/lib/multiqc/modules/clipandmerge 2025-12-09T17:02:14,945 creating build/lib/multiqc/modules/clusterflow 2025-12-09T17:02:14,945 copying multiqc/modules/clusterflow/__init__.py -> build/lib/multiqc/modules/clusterflow 2025-12-09T17:02:14,946 copying multiqc/modules/clusterflow/clusterflow.py -> build/lib/multiqc/modules/clusterflow 2025-12-09T17:02:14,946 creating build/lib/multiqc/modules/conpair 2025-12-09T17:02:14,947 copying multiqc/modules/conpair/__init__.py -> build/lib/multiqc/modules/conpair 2025-12-09T17:02:14,947 copying multiqc/modules/conpair/conpair.py -> build/lib/multiqc/modules/conpair 2025-12-09T17:02:14,948 creating build/lib/multiqc/modules/cutadapt 2025-12-09T17:02:14,949 copying multiqc/modules/cutadapt/__init__.py -> build/lib/multiqc/modules/cutadapt 2025-12-09T17:02:14,949 copying multiqc/modules/cutadapt/cutadapt.py -> build/lib/multiqc/modules/cutadapt 2025-12-09T17:02:14,950 creating build/lib/multiqc/modules/damageprofiler 2025-12-09T17:02:14,950 copying multiqc/modules/damageprofiler/__init__.py -> build/lib/multiqc/modules/damageprofiler 2025-12-09T17:02:14,951 copying multiqc/modules/damageprofiler/damageprofiler.py -> build/lib/multiqc/modules/damageprofiler 2025-12-09T17:02:14,951 creating build/lib/multiqc/modules/dedup 2025-12-09T17:02:14,952 copying multiqc/modules/dedup/__init__.py -> build/lib/multiqc/modules/dedup 2025-12-09T17:02:14,953 copying multiqc/modules/dedup/dedup.py -> build/lib/multiqc/modules/dedup 2025-12-09T17:02:14,953 creating build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,954 copying multiqc/modules/deeptools/__init__.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,954 copying multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,955 copying multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,955 copying multiqc/modules/deeptools/deeptools.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,956 copying multiqc/modules/deeptools/estimateReadFiltering.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,958 copying multiqc/modules/deeptools/plotCorrelation.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,960 copying multiqc/modules/deeptools/plotCoverage.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,963 copying multiqc/modules/deeptools/plotEnrichment.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,965 copying multiqc/modules/deeptools/plotFingerprint.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,968 copying multiqc/modules/deeptools/plotPCA.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,970 copying multiqc/modules/deeptools/plotProfile.py -> build/lib/multiqc/modules/deeptools 2025-12-09T17:02:14,972 creating build/lib/multiqc/modules/diamond 2025-12-09T17:02:14,973 copying multiqc/modules/diamond/__init__.py -> build/lib/multiqc/modules/diamond 2025-12-09T17:02:14,976 copying multiqc/modules/diamond/diamond.py -> build/lib/multiqc/modules/diamond 2025-12-09T17:02:14,978 creating build/lib/multiqc/modules/disambiguate 2025-12-09T17:02:14,979 copying multiqc/modules/disambiguate/__init__.py -> build/lib/multiqc/modules/disambiguate 2025-12-09T17:02:14,982 copying multiqc/modules/disambiguate/disambiguate.py -> build/lib/multiqc/modules/disambiguate 2025-12-09T17:02:14,984 creating build/lib/multiqc/modules/dragen 2025-12-09T17:02:14,985 copying multiqc/modules/dragen/__init__.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:14,987 copying multiqc/modules/dragen/coverage_hist.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:14,990 copying multiqc/modules/dragen/coverage_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:14,994 copying multiqc/modules/dragen/coverage_per_contig.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:14,997 copying multiqc/modules/dragen/dragen.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,000 copying multiqc/modules/dragen/dragen_gc_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,002 copying multiqc/modules/dragen/fragment_length.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,005 copying multiqc/modules/dragen/mapping_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,008 copying multiqc/modules/dragen/overall_mean_cov.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,011 copying multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,013 copying multiqc/modules/dragen/rna_quant_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,016 copying multiqc/modules/dragen/rna_transcript_cov.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,018 copying multiqc/modules/dragen/sc_atac_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,021 copying multiqc/modules/dragen/sc_rna_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,024 copying multiqc/modules/dragen/time_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,026 copying multiqc/modules/dragen/trimmer_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,029 copying multiqc/modules/dragen/utils.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,033 copying multiqc/modules/dragen/vc_metrics.py -> build/lib/multiqc/modules/dragen 2025-12-09T17:02:15,036 creating build/lib/multiqc/modules/dragen/tests 2025-12-09T17:02:15,038 copying multiqc/modules/dragen/tests/__init__.py -> build/lib/multiqc/modules/dragen/tests 2025-12-09T17:02:15,040 copying multiqc/modules/dragen/tests/test_dragen.py -> build/lib/multiqc/modules/dragen/tests 2025-12-09T17:02:15,043 creating build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,045 copying multiqc/modules/dragen_fastqc/__init__.py -> build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,048 copying multiqc/modules/dragen_fastqc/base_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,051 copying multiqc/modules/dragen_fastqc/content_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,053 copying multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,056 copying multiqc/modules/dragen_fastqc/gc_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,059 copying multiqc/modules/dragen_fastqc/read_metrics.py -> build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,061 copying multiqc/modules/dragen_fastqc/util.py -> build/lib/multiqc/modules/dragen_fastqc 2025-12-09T17:02:15,063 creating build/lib/multiqc/modules/dragen_fastqc/assets/js 2025-12-09T17:02:15,065 copying multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/lib/multiqc/modules/dragen_fastqc/assets/js 2025-12-09T17:02:15,068 creating build/lib/multiqc/modules/eigenstratdatabasetools 2025-12-09T17:02:15,069 copying multiqc/modules/eigenstratdatabasetools/__init__.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2025-12-09T17:02:15,071 copying multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/lib/multiqc/modules/eigenstratdatabasetools 2025-12-09T17:02:15,074 creating build/lib/multiqc/modules/fastp 2025-12-09T17:02:15,075 copying multiqc/modules/fastp/__init__.py -> build/lib/multiqc/modules/fastp 2025-12-09T17:02:15,077 copying multiqc/modules/fastp/fastp.py -> build/lib/multiqc/modules/fastp 2025-12-09T17:02:15,081 creating build/lib/multiqc/modules/fastq_screen 2025-12-09T17:02:15,082 copying multiqc/modules/fastq_screen/__init__.py -> build/lib/multiqc/modules/fastq_screen 2025-12-09T17:02:15,086 copying multiqc/modules/fastq_screen/fastq_screen.py -> build/lib/multiqc/modules/fastq_screen 2025-12-09T17:02:15,089 creating build/lib/multiqc/modules/fastqc 2025-12-09T17:02:15,090 copying multiqc/modules/fastqc/__init__.py -> build/lib/multiqc/modules/fastqc 2025-12-09T17:02:15,092 copying multiqc/modules/fastqc/fastqc.py -> build/lib/multiqc/modules/fastqc 2025-12-09T17:02:15,096 creating build/lib/multiqc/modules/fastqc/assets/css 2025-12-09T17:02:15,098 copying multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/lib/multiqc/modules/fastqc/assets/css 2025-12-09T17:02:15,100 creating build/lib/multiqc/modules/fastqc/assets/js 2025-12-09T17:02:15,101 copying multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/lib/multiqc/modules/fastqc/assets/js 2025-12-09T17:02:15,105 creating build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:15,106 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:15,108 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:15,111 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:15,113 copying multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:15,115 creating build/lib/multiqc/modules/featurecounts 2025-12-09T17:02:15,116 copying multiqc/modules/featurecounts/__init__.py -> build/lib/multiqc/modules/featurecounts 2025-12-09T17:02:15,119 copying multiqc/modules/featurecounts/featurecounts.py -> build/lib/multiqc/modules/featurecounts 2025-12-09T17:02:15,122 creating build/lib/multiqc/modules/fgbio 2025-12-09T17:02:15,123 copying multiqc/modules/fgbio/__init__.py -> build/lib/multiqc/modules/fgbio 2025-12-09T17:02:15,125 copying multiqc/modules/fgbio/error_rate_by_read_position.py -> build/lib/multiqc/modules/fgbio 2025-12-09T17:02:15,127 copying multiqc/modules/fgbio/fgbio.py -> build/lib/multiqc/modules/fgbio 2025-12-09T17:02:15,129 copying multiqc/modules/fgbio/group_reads_by_umi.py -> build/lib/multiqc/modules/fgbio 2025-12-09T17:02:15,131 creating build/lib/multiqc/modules/filtlong 2025-12-09T17:02:15,133 copying multiqc/modules/filtlong/__init__.py -> build/lib/multiqc/modules/filtlong 2025-12-09T17:02:15,135 copying multiqc/modules/filtlong/filtlong.py -> build/lib/multiqc/modules/filtlong 2025-12-09T17:02:15,138 creating build/lib/multiqc/modules/flash 2025-12-09T17:02:15,139 copying multiqc/modules/flash/__init__.py -> build/lib/multiqc/modules/flash 2025-12-09T17:02:15,141 copying multiqc/modules/flash/flash.py -> build/lib/multiqc/modules/flash 2025-12-09T17:02:15,144 creating build/lib/multiqc/modules/flexbar 2025-12-09T17:02:15,145 copying multiqc/modules/flexbar/__init__.py -> build/lib/multiqc/modules/flexbar 2025-12-09T17:02:15,147 copying multiqc/modules/flexbar/flexbar.py -> build/lib/multiqc/modules/flexbar 2025-12-09T17:02:15,150 creating build/lib/multiqc/modules/freyja 2025-12-09T17:02:15,151 copying multiqc/modules/freyja/__init__.py -> build/lib/multiqc/modules/freyja 2025-12-09T17:02:15,154 copying multiqc/modules/freyja/freyja.py -> build/lib/multiqc/modules/freyja 2025-12-09T17:02:15,157 creating build/lib/multiqc/modules/ganon 2025-12-09T17:02:15,158 copying multiqc/modules/ganon/__init__.py -> build/lib/multiqc/modules/ganon 2025-12-09T17:02:15,161 copying multiqc/modules/ganon/ganon.py -> build/lib/multiqc/modules/ganon 2025-12-09T17:02:15,164 creating build/lib/multiqc/modules/gatk 2025-12-09T17:02:15,165 copying multiqc/modules/gatk/__init__.py -> build/lib/multiqc/modules/gatk 2025-12-09T17:02:15,169 copying multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/lib/multiqc/modules/gatk 2025-12-09T17:02:15,173 copying multiqc/modules/gatk/base_recalibrator.py -> build/lib/multiqc/modules/gatk 2025-12-09T17:02:15,176 copying multiqc/modules/gatk/gatk.py -> build/lib/multiqc/modules/gatk 2025-12-09T17:02:15,179 copying multiqc/modules/gatk/utils.py -> build/lib/multiqc/modules/gatk 2025-12-09T17:02:15,181 copying multiqc/modules/gatk/varianteval.py -> build/lib/multiqc/modules/gatk 2025-12-09T17:02:15,184 creating build/lib/multiqc/modules/gffcompare 2025-12-09T17:02:15,185 copying multiqc/modules/gffcompare/__init__.py -> build/lib/multiqc/modules/gffcompare 2025-12-09T17:02:15,188 copying multiqc/modules/gffcompare/gffcompare.py -> build/lib/multiqc/modules/gffcompare 2025-12-09T17:02:15,191 creating build/lib/multiqc/modules/glimpse 2025-12-09T17:02:15,193 copying multiqc/modules/glimpse/__init__.py -> build/lib/multiqc/modules/glimpse 2025-12-09T17:02:15,196 copying multiqc/modules/glimpse/err_grp.py -> build/lib/multiqc/modules/glimpse 2025-12-09T17:02:15,201 copying multiqc/modules/glimpse/err_spl.py -> build/lib/multiqc/modules/glimpse 2025-12-09T17:02:15,205 copying multiqc/modules/glimpse/glimpse.py -> build/lib/multiqc/modules/glimpse 2025-12-09T17:02:15,208 creating build/lib/multiqc/modules/goleft_indexcov 2025-12-09T17:02:15,210 copying multiqc/modules/goleft_indexcov/__init__.py -> build/lib/multiqc/modules/goleft_indexcov 2025-12-09T17:02:15,213 copying multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/lib/multiqc/modules/goleft_indexcov 2025-12-09T17:02:15,216 creating build/lib/multiqc/modules/gopeaks 2025-12-09T17:02:15,217 copying multiqc/modules/gopeaks/__init__.py -> build/lib/multiqc/modules/gopeaks 2025-12-09T17:02:15,221 copying multiqc/modules/gopeaks/gopeaks.py -> build/lib/multiqc/modules/gopeaks 2025-12-09T17:02:15,224 creating build/lib/multiqc/modules/gtdbtk 2025-12-09T17:02:15,226 copying multiqc/modules/gtdbtk/__init__.py -> build/lib/multiqc/modules/gtdbtk 2025-12-09T17:02:15,229 copying multiqc/modules/gtdbtk/gtdbtk.py -> build/lib/multiqc/modules/gtdbtk 2025-12-09T17:02:15,233 creating build/lib/multiqc/modules/haplocheck 2025-12-09T17:02:15,234 copying multiqc/modules/haplocheck/__init__.py -> build/lib/multiqc/modules/haplocheck 2025-12-09T17:02:15,237 copying multiqc/modules/haplocheck/haplocheck.py -> build/lib/multiqc/modules/haplocheck 2025-12-09T17:02:15,239 creating build/lib/multiqc/modules/happy 2025-12-09T17:02:15,241 copying multiqc/modules/happy/__init__.py -> build/lib/multiqc/modules/happy 2025-12-09T17:02:15,243 copying multiqc/modules/happy/happy.py -> build/lib/multiqc/modules/happy 2025-12-09T17:02:15,246 creating build/lib/multiqc/modules/hicexplorer 2025-12-09T17:02:15,247 copying multiqc/modules/hicexplorer/__init__.py -> build/lib/multiqc/modules/hicexplorer 2025-12-09T17:02:15,250 copying multiqc/modules/hicexplorer/hicexplorer.py -> build/lib/multiqc/modules/hicexplorer 2025-12-09T17:02:15,253 creating build/lib/multiqc/modules/hicpro 2025-12-09T17:02:15,254 copying multiqc/modules/hicpro/__init__.py -> build/lib/multiqc/modules/hicpro 2025-12-09T17:02:15,256 copying multiqc/modules/hicpro/hicpro.py -> build/lib/multiqc/modules/hicpro 2025-12-09T17:02:15,259 creating build/lib/multiqc/modules/hicup 2025-12-09T17:02:15,260 copying multiqc/modules/hicup/__init__.py -> build/lib/multiqc/modules/hicup 2025-12-09T17:02:15,262 copying multiqc/modules/hicup/hicup.py -> build/lib/multiqc/modules/hicup 2025-12-09T17:02:15,265 creating build/lib/multiqc/modules/hifiasm 2025-12-09T17:02:15,266 copying multiqc/modules/hifiasm/__init__.py -> build/lib/multiqc/modules/hifiasm 2025-12-09T17:02:15,268 copying multiqc/modules/hifiasm/hifiasm.py -> build/lib/multiqc/modules/hifiasm 2025-12-09T17:02:15,270 creating build/lib/multiqc/modules/hisat2 2025-12-09T17:02:15,272 copying multiqc/modules/hisat2/__init__.py -> build/lib/multiqc/modules/hisat2 2025-12-09T17:02:15,274 copying multiqc/modules/hisat2/hisat2.py -> build/lib/multiqc/modules/hisat2 2025-12-09T17:02:15,277 creating build/lib/multiqc/modules/homer 2025-12-09T17:02:15,278 copying multiqc/modules/homer/__init__.py -> build/lib/multiqc/modules/homer 2025-12-09T17:02:15,280 copying multiqc/modules/homer/findpeaks.py -> build/lib/multiqc/modules/homer 2025-12-09T17:02:15,282 copying multiqc/modules/homer/homer.py -> build/lib/multiqc/modules/homer 2025-12-09T17:02:15,285 copying multiqc/modules/homer/tagdirectory.py -> build/lib/multiqc/modules/homer 2025-12-09T17:02:15,287 creating build/lib/multiqc/modules/hops 2025-12-09T17:02:15,288 copying multiqc/modules/hops/__init__.py -> build/lib/multiqc/modules/hops 2025-12-09T17:02:15,291 copying multiqc/modules/hops/hops.py -> build/lib/multiqc/modules/hops 2025-12-09T17:02:15,293 creating build/lib/multiqc/modules/hostile 2025-12-09T17:02:15,294 copying multiqc/modules/hostile/__init__.py -> build/lib/multiqc/modules/hostile 2025-12-09T17:02:15,297 copying multiqc/modules/hostile/hostile.py -> build/lib/multiqc/modules/hostile 2025-12-09T17:02:15,299 creating build/lib/multiqc/modules/htseq 2025-12-09T17:02:15,300 copying multiqc/modules/htseq/__init__.py -> build/lib/multiqc/modules/htseq 2025-12-09T17:02:15,302 copying multiqc/modules/htseq/htseq.py -> build/lib/multiqc/modules/htseq 2025-12-09T17:02:15,305 creating build/lib/multiqc/modules/humid 2025-12-09T17:02:15,306 copying multiqc/modules/humid/__init__.py -> build/lib/multiqc/modules/humid 2025-12-09T17:02:15,308 copying multiqc/modules/humid/clusters.py -> build/lib/multiqc/modules/humid 2025-12-09T17:02:15,311 copying multiqc/modules/humid/counts.py -> build/lib/multiqc/modules/humid 2025-12-09T17:02:15,313 copying multiqc/modules/humid/humid.py -> build/lib/multiqc/modules/humid 2025-12-09T17:02:15,316 copying multiqc/modules/humid/neighbours.py -> build/lib/multiqc/modules/humid 2025-12-09T17:02:15,318 copying multiqc/modules/humid/stats.py -> build/lib/multiqc/modules/humid 2025-12-09T17:02:15,320 creating build/lib/multiqc/modules/interop 2025-12-09T17:02:15,321 copying multiqc/modules/interop/__init__.py -> build/lib/multiqc/modules/interop 2025-12-09T17:02:15,324 copying multiqc/modules/interop/interop.py -> build/lib/multiqc/modules/interop 2025-12-09T17:02:15,327 creating build/lib/multiqc/modules/isoseq 2025-12-09T17:02:15,328 copying multiqc/modules/isoseq/__init__.py -> build/lib/multiqc/modules/isoseq 2025-12-09T17:02:15,330 copying multiqc/modules/isoseq/isoseq.py -> build/lib/multiqc/modules/isoseq 2025-12-09T17:02:15,333 creating build/lib/multiqc/modules/ivar 2025-12-09T17:02:15,334 copying multiqc/modules/ivar/__init__.py -> build/lib/multiqc/modules/ivar 2025-12-09T17:02:15,336 copying multiqc/modules/ivar/ivar.py -> build/lib/multiqc/modules/ivar 2025-12-09T17:02:15,339 creating build/lib/multiqc/modules/jcvi 2025-12-09T17:02:15,340 copying multiqc/modules/jcvi/__init__.py -> build/lib/multiqc/modules/jcvi 2025-12-09T17:02:15,342 copying multiqc/modules/jcvi/jcvi.py -> build/lib/multiqc/modules/jcvi 2025-12-09T17:02:15,345 creating build/lib/multiqc/modules/jellyfish 2025-12-09T17:02:15,346 copying multiqc/modules/jellyfish/__init__.py -> build/lib/multiqc/modules/jellyfish 2025-12-09T17:02:15,348 copying multiqc/modules/jellyfish/jellyfish.py -> build/lib/multiqc/modules/jellyfish 2025-12-09T17:02:15,352 creating build/lib/multiqc/modules/kaiju 2025-12-09T17:02:15,353 copying multiqc/modules/kaiju/__init__.py -> build/lib/multiqc/modules/kaiju 2025-12-09T17:02:15,357 copying multiqc/modules/kaiju/kaiju.py -> build/lib/multiqc/modules/kaiju 2025-12-09T17:02:15,361 creating build/lib/multiqc/modules/kallisto 2025-12-09T17:02:15,362 copying multiqc/modules/kallisto/__init__.py -> build/lib/multiqc/modules/kallisto 2025-12-09T17:02:15,365 copying multiqc/modules/kallisto/kallisto.py -> build/lib/multiqc/modules/kallisto 2025-12-09T17:02:15,369 creating build/lib/multiqc/modules/kat 2025-12-09T17:02:15,370 copying multiqc/modules/kat/__init__.py -> build/lib/multiqc/modules/kat 2025-12-09T17:02:15,372 copying multiqc/modules/kat/kat.py -> build/lib/multiqc/modules/kat 2025-12-09T17:02:15,375 creating build/lib/multiqc/modules/kraken 2025-12-09T17:02:15,377 copying multiqc/modules/kraken/__init__.py -> build/lib/multiqc/modules/kraken 2025-12-09T17:02:15,381 copying multiqc/modules/kraken/kraken.py -> build/lib/multiqc/modules/kraken 2025-12-09T17:02:15,384 creating build/lib/multiqc/modules/leehom 2025-12-09T17:02:15,385 copying multiqc/modules/leehom/__init__.py -> build/lib/multiqc/modules/leehom 2025-12-09T17:02:15,388 copying multiqc/modules/leehom/leehom.py -> build/lib/multiqc/modules/leehom 2025-12-09T17:02:15,390 creating build/lib/multiqc/modules/librarian 2025-12-09T17:02:15,391 copying multiqc/modules/librarian/__init__.py -> build/lib/multiqc/modules/librarian 2025-12-09T17:02:15,393 copying multiqc/modules/librarian/librarian.py -> build/lib/multiqc/modules/librarian 2025-12-09T17:02:15,396 creating build/lib/multiqc/modules/lima 2025-12-09T17:02:15,397 copying multiqc/modules/lima/__init__.py -> build/lib/multiqc/modules/lima 2025-12-09T17:02:15,400 copying multiqc/modules/lima/lima.py -> build/lib/multiqc/modules/lima 2025-12-09T17:02:15,402 creating build/lib/multiqc/modules/longranger 2025-12-09T17:02:15,403 copying multiqc/modules/longranger/__init__.py -> build/lib/multiqc/modules/longranger 2025-12-09T17:02:15,406 copying multiqc/modules/longranger/longranger.py -> build/lib/multiqc/modules/longranger 2025-12-09T17:02:15,409 creating build/lib/multiqc/modules/macs2 2025-12-09T17:02:15,411 copying multiqc/modules/macs2/__init__.py -> build/lib/multiqc/modules/macs2 2025-12-09T17:02:15,413 copying multiqc/modules/macs2/macs2.py -> build/lib/multiqc/modules/macs2 2025-12-09T17:02:15,415 creating build/lib/multiqc/modules/malt 2025-12-09T17:02:15,416 copying multiqc/modules/malt/__init__.py -> build/lib/multiqc/modules/malt 2025-12-09T17:02:15,418 copying multiqc/modules/malt/malt.py -> build/lib/multiqc/modules/malt 2025-12-09T17:02:15,421 creating build/lib/multiqc/modules/mapdamage 2025-12-09T17:02:15,422 copying multiqc/modules/mapdamage/__init__.py -> build/lib/multiqc/modules/mapdamage 2025-12-09T17:02:15,424 copying multiqc/modules/mapdamage/mapdamage.py -> build/lib/multiqc/modules/mapdamage 2025-12-09T17:02:15,427 creating build/lib/multiqc/modules/megahit 2025-12-09T17:02:15,428 copying multiqc/modules/megahit/__init__.py -> build/lib/multiqc/modules/megahit 2025-12-09T17:02:15,431 copying multiqc/modules/megahit/megahit.py -> build/lib/multiqc/modules/megahit 2025-12-09T17:02:15,433 creating build/lib/multiqc/modules/metaphlan 2025-12-09T17:02:15,434 copying multiqc/modules/metaphlan/__init__.py -> build/lib/multiqc/modules/metaphlan 2025-12-09T17:02:15,436 copying multiqc/modules/metaphlan/metaphlan.py -> build/lib/multiqc/modules/metaphlan 2025-12-09T17:02:15,439 creating build/lib/multiqc/modules/methylqa 2025-12-09T17:02:15,440 copying multiqc/modules/methylqa/__init__.py -> build/lib/multiqc/modules/methylqa 2025-12-09T17:02:15,442 copying multiqc/modules/methylqa/methylqa.py -> build/lib/multiqc/modules/methylqa 2025-12-09T17:02:15,445 creating build/lib/multiqc/modules/mgikit 2025-12-09T17:02:15,446 copying multiqc/modules/mgikit/__init__.py -> build/lib/multiqc/modules/mgikit 2025-12-09T17:02:15,448 copying multiqc/modules/mgikit/mgikit.py -> build/lib/multiqc/modules/mgikit 2025-12-09T17:02:15,451 creating build/lib/multiqc/modules/minionqc 2025-12-09T17:02:15,452 copying multiqc/modules/minionqc/__init__.py -> build/lib/multiqc/modules/minionqc 2025-12-09T17:02:15,454 copying multiqc/modules/minionqc/minionqc.py -> build/lib/multiqc/modules/minionqc 2025-12-09T17:02:15,457 creating build/lib/multiqc/modules/mirtop 2025-12-09T17:02:15,458 copying multiqc/modules/mirtop/__init__.py -> build/lib/multiqc/modules/mirtop 2025-12-09T17:02:15,460 copying multiqc/modules/mirtop/mirtop.py -> build/lib/multiqc/modules/mirtop 2025-12-09T17:02:15,463 creating build/lib/multiqc/modules/mirtrace 2025-12-09T17:02:15,464 copying multiqc/modules/mirtrace/__init__.py -> build/lib/multiqc/modules/mirtrace 2025-12-09T17:02:15,467 copying multiqc/modules/mirtrace/mirtrace.py -> build/lib/multiqc/modules/mirtrace 2025-12-09T17:02:15,469 creating build/lib/multiqc/modules/mosaicatcher 2025-12-09T17:02:15,470 copying multiqc/modules/mosaicatcher/__init__.py -> build/lib/multiqc/modules/mosaicatcher 2025-12-09T17:02:15,473 copying multiqc/modules/mosaicatcher/mosaicatcher.py -> build/lib/multiqc/modules/mosaicatcher 2025-12-09T17:02:15,475 creating build/lib/multiqc/modules/mosdepth 2025-12-09T17:02:15,476 copying multiqc/modules/mosdepth/__init__.py -> build/lib/multiqc/modules/mosdepth 2025-12-09T17:02:15,479 copying multiqc/modules/mosdepth/mosdepth.py -> build/lib/multiqc/modules/mosdepth 2025-12-09T17:02:15,483 creating build/lib/multiqc/modules/motus 2025-12-09T17:02:15,484 copying multiqc/modules/motus/__init__.py -> build/lib/multiqc/modules/motus 2025-12-09T17:02:15,486 copying multiqc/modules/motus/motus.py -> build/lib/multiqc/modules/motus 2025-12-09T17:02:15,491 creating build/lib/multiqc/modules/mtnucratio 2025-12-09T17:02:15,492 copying multiqc/modules/mtnucratio/__init__.py -> build/lib/multiqc/modules/mtnucratio 2025-12-09T17:02:15,494 copying multiqc/modules/mtnucratio/mtnucratio.py -> build/lib/multiqc/modules/mtnucratio 2025-12-09T17:02:15,497 creating build/lib/multiqc/modules/multivcfanalyzer 2025-12-09T17:02:15,498 copying multiqc/modules/multivcfanalyzer/__init__.py -> build/lib/multiqc/modules/multivcfanalyzer 2025-12-09T17:02:15,500 copying multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/lib/multiqc/modules/multivcfanalyzer 2025-12-09T17:02:15,503 creating build/lib/multiqc/modules/nanoq 2025-12-09T17:02:15,503 copying multiqc/modules/nanoq/__init__.py -> build/lib/multiqc/modules/nanoq 2025-12-09T17:02:15,506 copying multiqc/modules/nanoq/nanoq.py -> build/lib/multiqc/modules/nanoq 2025-12-09T17:02:15,509 creating build/lib/multiqc/modules/nanostat 2025-12-09T17:02:15,511 copying multiqc/modules/nanostat/__init__.py -> build/lib/multiqc/modules/nanostat 2025-12-09T17:02:15,515 copying multiqc/modules/nanostat/nanostat.py -> build/lib/multiqc/modules/nanostat 2025-12-09T17:02:15,520 creating build/lib/multiqc/modules/nextclade 2025-12-09T17:02:15,522 copying multiqc/modules/nextclade/__init__.py -> build/lib/multiqc/modules/nextclade 2025-12-09T17:02:15,525 copying multiqc/modules/nextclade/nextclade.py -> build/lib/multiqc/modules/nextclade 2025-12-09T17:02:15,529 creating build/lib/multiqc/modules/ngsbits 2025-12-09T17:02:15,531 copying multiqc/modules/ngsbits/__init__.py -> build/lib/multiqc/modules/ngsbits 2025-12-09T17:02:15,534 copying multiqc/modules/ngsbits/mappingqc.py -> build/lib/multiqc/modules/ngsbits 2025-12-09T17:02:15,536 copying multiqc/modules/ngsbits/ngsbits.py -> build/lib/multiqc/modules/ngsbits 2025-12-09T17:02:15,538 copying multiqc/modules/ngsbits/readqc.py -> build/lib/multiqc/modules/ngsbits 2025-12-09T17:02:15,541 copying multiqc/modules/ngsbits/samplegender.py -> build/lib/multiqc/modules/ngsbits 2025-12-09T17:02:15,543 copying multiqc/modules/ngsbits/utils.py -> build/lib/multiqc/modules/ngsbits 2025-12-09T17:02:15,546 creating build/lib/multiqc/modules/ngsderive 2025-12-09T17:02:15,547 copying multiqc/modules/ngsderive/__init__.py -> build/lib/multiqc/modules/ngsderive 2025-12-09T17:02:15,549 copying multiqc/modules/ngsderive/ngsderive.py -> build/lib/multiqc/modules/ngsderive 2025-12-09T17:02:15,552 creating build/lib/multiqc/modules/nonpareil 2025-12-09T17:02:15,554 copying multiqc/modules/nonpareil/__init__.py -> build/lib/multiqc/modules/nonpareil 2025-12-09T17:02:15,556 copying multiqc/modules/nonpareil/nonpareil.py -> build/lib/multiqc/modules/nonpareil 2025-12-09T17:02:15,559 creating build/lib/multiqc/modules/odgi 2025-12-09T17:02:15,560 copying multiqc/modules/odgi/__init__.py -> build/lib/multiqc/modules/odgi 2025-12-09T17:02:15,562 copying multiqc/modules/odgi/odgi.py -> build/lib/multiqc/modules/odgi 2025-12-09T17:02:15,565 creating build/lib/multiqc/modules/optitype 2025-12-09T17:02:15,566 copying multiqc/modules/optitype/__init__.py -> build/lib/multiqc/modules/optitype 2025-12-09T17:02:15,568 copying multiqc/modules/optitype/optitype.py -> build/lib/multiqc/modules/optitype 2025-12-09T17:02:15,572 creating build/lib/multiqc/modules/pairtools 2025-12-09T17:02:15,574 copying multiqc/modules/pairtools/__init__.py -> build/lib/multiqc/modules/pairtools 2025-12-09T17:02:15,578 copying multiqc/modules/pairtools/pairtools.py -> build/lib/multiqc/modules/pairtools 2025-12-09T17:02:15,581 copying multiqc/modules/pairtools/params.yml -> build/lib/multiqc/modules/pairtools 2025-12-09T17:02:15,584 copying multiqc/modules/pairtools/utils.py -> build/lib/multiqc/modules/pairtools 2025-12-09T17:02:15,586 creating build/lib/multiqc/modules/pangolin 2025-12-09T17:02:15,587 copying multiqc/modules/pangolin/__init__.py -> build/lib/multiqc/modules/pangolin 2025-12-09T17:02:15,589 copying multiqc/modules/pangolin/pangolin.py -> build/lib/multiqc/modules/pangolin 2025-12-09T17:02:15,592 creating build/lib/multiqc/modules/pbmarkdup 2025-12-09T17:02:15,593 copying multiqc/modules/pbmarkdup/__init__.py -> build/lib/multiqc/modules/pbmarkdup 2025-12-09T17:02:15,595 copying multiqc/modules/pbmarkdup/pbmarkdup.py -> build/lib/multiqc/modules/pbmarkdup 2025-12-09T17:02:15,598 creating build/lib/multiqc/modules/peddy 2025-12-09T17:02:15,599 copying multiqc/modules/peddy/__init__.py -> build/lib/multiqc/modules/peddy 2025-12-09T17:02:15,601 copying multiqc/modules/peddy/peddy.py -> build/lib/multiqc/modules/peddy 2025-12-09T17:02:15,604 creating build/lib/multiqc/modules/percolator 2025-12-09T17:02:15,605 copying multiqc/modules/percolator/__init__.py -> build/lib/multiqc/modules/percolator 2025-12-09T17:02:15,607 copying multiqc/modules/percolator/percolator.py -> build/lib/multiqc/modules/percolator 2025-12-09T17:02:15,610 creating build/lib/multiqc/modules/phantompeakqualtools 2025-12-09T17:02:15,611 copying multiqc/modules/phantompeakqualtools/__init__.py -> build/lib/multiqc/modules/phantompeakqualtools 2025-12-09T17:02:15,613 copying multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/lib/multiqc/modules/phantompeakqualtools 2025-12-09T17:02:15,616 creating build/lib/multiqc/modules/picard 2025-12-09T17:02:15,617 copying multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,621 copying multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,627 copying multiqc/modules/picard/CrosscheckFingerprints.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,633 copying multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,635 copying multiqc/modules/picard/GcBiasMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,637 copying multiqc/modules/picard/HsMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,640 copying multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,643 copying multiqc/modules/picard/IlluminaLaneMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,645 copying multiqc/modules/picard/InsertSizeMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,648 copying multiqc/modules/picard/MarkDuplicates.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,651 copying multiqc/modules/picard/MarkIlluminaAdapters.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,653 copying multiqc/modules/picard/OxoGMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,657 copying multiqc/modules/picard/QualityByCycleMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,661 copying multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,664 copying multiqc/modules/picard/QualityYieldMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,667 copying multiqc/modules/picard/RnaSeqMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,671 copying multiqc/modules/picard/RrbsSummaryMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,674 copying multiqc/modules/picard/TargetedPcrMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,678 copying multiqc/modules/picard/ValidateSamFile.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,682 copying multiqc/modules/picard/VariantCallingMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,686 copying multiqc/modules/picard/WgsMetrics.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,692 copying multiqc/modules/picard/__init__.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,695 copying multiqc/modules/picard/picard.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,698 copying multiqc/modules/picard/util.py -> build/lib/multiqc/modules/picard 2025-12-09T17:02:15,700 creating build/lib/multiqc/modules/picard/tests 2025-12-09T17:02:15,702 copying multiqc/modules/picard/tests/__init__.py -> build/lib/multiqc/modules/picard/tests 2025-12-09T17:02:15,704 copying multiqc/modules/picard/tests/test_picard.py -> build/lib/multiqc/modules/picard/tests 2025-12-09T17:02:15,706 creating build/lib/multiqc/modules/porechop 2025-12-09T17:02:15,707 copying multiqc/modules/porechop/__init__.py -> build/lib/multiqc/modules/porechop 2025-12-09T17:02:15,709 copying multiqc/modules/porechop/porechop.py -> build/lib/multiqc/modules/porechop 2025-12-09T17:02:15,712 creating build/lib/multiqc/modules/preseq 2025-12-09T17:02:15,713 copying multiqc/modules/preseq/__init__.py -> build/lib/multiqc/modules/preseq 2025-12-09T17:02:15,716 copying multiqc/modules/preseq/preseq.py -> build/lib/multiqc/modules/preseq 2025-12-09T17:02:15,718 creating build/lib/multiqc/modules/prinseqplusplus 2025-12-09T17:02:15,719 copying multiqc/modules/prinseqplusplus/__init__.py -> build/lib/multiqc/modules/prinseqplusplus 2025-12-09T17:02:15,722 copying multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/lib/multiqc/modules/prinseqplusplus 2025-12-09T17:02:15,725 creating build/lib/multiqc/modules/prokka 2025-12-09T17:02:15,726 copying multiqc/modules/prokka/__init__.py -> build/lib/multiqc/modules/prokka 2025-12-09T17:02:15,728 copying multiqc/modules/prokka/prokka.py -> build/lib/multiqc/modules/prokka 2025-12-09T17:02:15,731 creating build/lib/multiqc/modules/purple 2025-12-09T17:02:15,732 copying multiqc/modules/purple/__init__.py -> build/lib/multiqc/modules/purple 2025-12-09T17:02:15,735 copying multiqc/modules/purple/purple.py -> build/lib/multiqc/modules/purple 2025-12-09T17:02:15,738 creating build/lib/multiqc/modules/pychopper 2025-12-09T17:02:15,740 copying multiqc/modules/pychopper/__init__.py -> build/lib/multiqc/modules/pychopper 2025-12-09T17:02:15,742 copying multiqc/modules/pychopper/pychopper.py -> build/lib/multiqc/modules/pychopper 2025-12-09T17:02:15,745 creating build/lib/multiqc/modules/pycoqc 2025-12-09T17:02:15,746 copying multiqc/modules/pycoqc/__init__.py -> build/lib/multiqc/modules/pycoqc 2025-12-09T17:02:15,749 copying multiqc/modules/pycoqc/pycoqc.py -> build/lib/multiqc/modules/pycoqc 2025-12-09T17:02:15,752 creating build/lib/multiqc/modules/qc3C 2025-12-09T17:02:15,753 copying multiqc/modules/qc3C/__init__.py -> build/lib/multiqc/modules/qc3C 2025-12-09T17:02:15,756 copying multiqc/modules/qc3C/qc3C.py -> build/lib/multiqc/modules/qc3C 2025-12-09T17:02:15,760 creating build/lib/multiqc/modules/qorts 2025-12-09T17:02:15,762 copying multiqc/modules/qorts/__init__.py -> build/lib/multiqc/modules/qorts 2025-12-09T17:02:15,764 copying multiqc/modules/qorts/qorts.py -> build/lib/multiqc/modules/qorts 2025-12-09T17:02:15,768 creating build/lib/multiqc/modules/qualimap 2025-12-09T17:02:15,769 copying multiqc/modules/qualimap/QM_BamQC.py -> build/lib/multiqc/modules/qualimap 2025-12-09T17:02:15,773 copying multiqc/modules/qualimap/QM_RNASeq.py -> build/lib/multiqc/modules/qualimap 2025-12-09T17:02:15,776 copying multiqc/modules/qualimap/__init__.py -> build/lib/multiqc/modules/qualimap 2025-12-09T17:02:15,779 copying multiqc/modules/qualimap/qualimap.py -> build/lib/multiqc/modules/qualimap 2025-12-09T17:02:15,782 creating build/lib/multiqc/modules/quast 2025-12-09T17:02:15,783 copying multiqc/modules/quast/__init__.py -> build/lib/multiqc/modules/quast 2025-12-09T17:02:15,786 copying multiqc/modules/quast/quast.py -> build/lib/multiqc/modules/quast 2025-12-09T17:02:15,789 creating build/lib/multiqc/modules/ribotish 2025-12-09T17:02:15,790 copying multiqc/modules/ribotish/__init__.py -> build/lib/multiqc/modules/ribotish 2025-12-09T17:02:15,793 copying multiqc/modules/ribotish/ribotish.py -> build/lib/multiqc/modules/ribotish 2025-12-09T17:02:15,796 creating build/lib/multiqc/modules/ribotish/tests 2025-12-09T17:02:15,797 copying multiqc/modules/ribotish/tests/__init__.py -> build/lib/multiqc/modules/ribotish/tests 2025-12-09T17:02:15,799 copying multiqc/modules/ribotish/tests/test_ribotish.py -> build/lib/multiqc/modules/ribotish/tests 2025-12-09T17:02:15,802 creating build/lib/multiqc/modules/rna_seqc 2025-12-09T17:02:15,803 copying multiqc/modules/rna_seqc/__init__.py -> build/lib/multiqc/modules/rna_seqc 2025-12-09T17:02:15,806 copying multiqc/modules/rna_seqc/rna_seqc.py -> build/lib/multiqc/modules/rna_seqc 2025-12-09T17:02:15,809 creating build/lib/multiqc/modules/rockhopper 2025-12-09T17:02:15,810 copying multiqc/modules/rockhopper/__init__.py -> build/lib/multiqc/modules/rockhopper 2025-12-09T17:02:15,813 copying multiqc/modules/rockhopper/rockhopper.py -> build/lib/multiqc/modules/rockhopper 2025-12-09T17:02:15,816 creating build/lib/multiqc/modules/rsem 2025-12-09T17:02:15,818 copying multiqc/modules/rsem/__init__.py -> build/lib/multiqc/modules/rsem 2025-12-09T17:02:15,821 copying multiqc/modules/rsem/rsem.py -> build/lib/multiqc/modules/rsem 2025-12-09T17:02:15,825 creating build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,826 copying multiqc/modules/rseqc/__init__.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,829 copying multiqc/modules/rseqc/bam_stat.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,832 copying multiqc/modules/rseqc/gene_body_coverage.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,835 copying multiqc/modules/rseqc/infer_experiment.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,838 copying multiqc/modules/rseqc/inner_distance.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,840 copying multiqc/modules/rseqc/junction_annotation.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,843 copying multiqc/modules/rseqc/junction_saturation.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,845 copying multiqc/modules/rseqc/read_distribution.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,848 copying multiqc/modules/rseqc/read_duplication.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,851 copying multiqc/modules/rseqc/read_gc.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,853 copying multiqc/modules/rseqc/rseqc.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,855 copying multiqc/modules/rseqc/tin.py -> build/lib/multiqc/modules/rseqc 2025-12-09T17:02:15,858 creating build/lib/multiqc/modules/salmon 2025-12-09T17:02:15,859 copying multiqc/modules/salmon/__init__.py -> build/lib/multiqc/modules/salmon 2025-12-09T17:02:15,862 copying multiqc/modules/salmon/salmon.py -> build/lib/multiqc/modules/salmon 2025-12-09T17:02:15,865 creating build/lib/multiqc/modules/sambamba 2025-12-09T17:02:15,867 copying multiqc/modules/sambamba/__init__.py -> build/lib/multiqc/modules/sambamba 2025-12-09T17:02:15,869 copying multiqc/modules/sambamba/markdup.py -> build/lib/multiqc/modules/sambamba 2025-12-09T17:02:15,872 copying multiqc/modules/sambamba/sambamba.py -> build/lib/multiqc/modules/sambamba 2025-12-09T17:02:15,875 creating build/lib/multiqc/modules/samblaster 2025-12-09T17:02:15,876 copying multiqc/modules/samblaster/__init__.py -> build/lib/multiqc/modules/samblaster 2025-12-09T17:02:15,879 copying multiqc/modules/samblaster/samblaster.py -> build/lib/multiqc/modules/samblaster 2025-12-09T17:02:15,882 creating build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,884 copying multiqc/modules/samtools/__init__.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,886 copying multiqc/modules/samtools/ampliconclip.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,889 copying multiqc/modules/samtools/coverage.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,892 copying multiqc/modules/samtools/flagstat.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,895 copying multiqc/modules/samtools/idxstats.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,898 copying multiqc/modules/samtools/markdup.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,902 copying multiqc/modules/samtools/rmdup.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,904 copying multiqc/modules/samtools/samtools.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,907 copying multiqc/modules/samtools/stats.py -> build/lib/multiqc/modules/samtools 2025-12-09T17:02:15,910 creating build/lib/multiqc/modules/samtools/tests 2025-12-09T17:02:15,912 copying multiqc/modules/samtools/tests/__init__.py -> build/lib/multiqc/modules/samtools/tests 2025-12-09T17:02:15,914 copying multiqc/modules/samtools/tests/test_coverage.py -> build/lib/multiqc/modules/samtools/tests 2025-12-09T17:02:15,917 copying multiqc/modules/samtools/tests/test_flagstat.py -> build/lib/multiqc/modules/samtools/tests 2025-12-09T17:02:15,919 creating build/lib/multiqc/modules/sargasso 2025-12-09T17:02:15,921 copying multiqc/modules/sargasso/__init__.py -> build/lib/multiqc/modules/sargasso 2025-12-09T17:02:15,924 copying multiqc/modules/sargasso/sargasso.py -> build/lib/multiqc/modules/sargasso 2025-12-09T17:02:15,927 creating build/lib/multiqc/modules/seqera_cli 2025-12-09T17:02:15,928 copying multiqc/modules/seqera_cli/__init__.py -> build/lib/multiqc/modules/seqera_cli 2025-12-09T17:02:15,931 copying multiqc/modules/seqera_cli/seqera_cli.py -> build/lib/multiqc/modules/seqera_cli 2025-12-09T17:02:15,936 creating build/lib/multiqc/modules/seqfu 2025-12-09T17:02:15,937 copying multiqc/modules/seqfu/__init__.py -> build/lib/multiqc/modules/seqfu 2025-12-09T17:02:15,940 copying multiqc/modules/seqfu/seqfu.py -> build/lib/multiqc/modules/seqfu 2025-12-09T17:02:15,942 copying multiqc/modules/seqfu/stats.py -> build/lib/multiqc/modules/seqfu 2025-12-09T17:02:15,945 creating build/lib/multiqc/modules/seqfu/test 2025-12-09T17:02:15,947 copying multiqc/modules/seqfu/test/test_stats.py -> build/lib/multiqc/modules/seqfu/test 2025-12-09T17:02:15,949 creating build/lib/multiqc/modules/seqkit 2025-12-09T17:02:15,951 copying multiqc/modules/seqkit/__init__.py -> build/lib/multiqc/modules/seqkit 2025-12-09T17:02:15,954 copying multiqc/modules/seqkit/seqkit.py -> build/lib/multiqc/modules/seqkit 2025-12-09T17:02:15,958 copying multiqc/modules/seqkit/stats.py -> build/lib/multiqc/modules/seqkit 2025-12-09T17:02:15,962 creating build/lib/multiqc/modules/seqkit/tests 2025-12-09T17:02:15,963 copying multiqc/modules/seqkit/tests/__init__.py -> build/lib/multiqc/modules/seqkit/tests 2025-12-09T17:02:15,967 copying multiqc/modules/seqkit/tests/test_stats.py -> build/lib/multiqc/modules/seqkit/tests 2025-12-09T17:02:15,971 creating build/lib/multiqc/modules/sequali 2025-12-09T17:02:15,973 copying multiqc/modules/sequali/__init__.py -> build/lib/multiqc/modules/sequali 2025-12-09T17:02:15,976 copying multiqc/modules/sequali/sequali.py -> build/lib/multiqc/modules/sequali 2025-12-09T17:02:15,982 creating build/lib/multiqc/modules/seqwho 2025-12-09T17:02:15,984 copying multiqc/modules/seqwho/__init__.py -> build/lib/multiqc/modules/seqwho 2025-12-09T17:02:15,988 copying multiqc/modules/seqwho/seqwho.py -> build/lib/multiqc/modules/seqwho 2025-12-09T17:02:15,992 creating build/lib/multiqc/modules/seqyclean 2025-12-09T17:02:15,993 copying multiqc/modules/seqyclean/__init__.py -> build/lib/multiqc/modules/seqyclean 2025-12-09T17:02:15,996 copying multiqc/modules/seqyclean/seqyclean.py -> build/lib/multiqc/modules/seqyclean 2025-12-09T17:02:16,000 creating build/lib/multiqc/modules/sexdeterrmine 2025-12-09T17:02:16,001 copying multiqc/modules/sexdeterrmine/__init__.py -> build/lib/multiqc/modules/sexdeterrmine 2025-12-09T17:02:16,005 copying multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/lib/multiqc/modules/sexdeterrmine 2025-12-09T17:02:16,008 creating build/lib/multiqc/modules/sickle 2025-12-09T17:02:16,010 copying multiqc/modules/sickle/__init__.py -> build/lib/multiqc/modules/sickle 2025-12-09T17:02:16,013 copying multiqc/modules/sickle/sickle.py -> build/lib/multiqc/modules/sickle 2025-12-09T17:02:16,017 creating build/lib/multiqc/modules/skewer 2025-12-09T17:02:16,019 copying multiqc/modules/skewer/__init__.py -> build/lib/multiqc/modules/skewer 2025-12-09T17:02:16,022 copying multiqc/modules/skewer/skewer.py -> build/lib/multiqc/modules/skewer 2025-12-09T17:02:16,025 creating build/lib/multiqc/modules/slamdunk 2025-12-09T17:02:16,027 copying multiqc/modules/slamdunk/__init__.py -> build/lib/multiqc/modules/slamdunk 2025-12-09T17:02:16,031 copying multiqc/modules/slamdunk/slamdunk.py -> build/lib/multiqc/modules/slamdunk 2025-12-09T17:02:16,035 creating build/lib/multiqc/modules/snippy 2025-12-09T17:02:16,037 copying multiqc/modules/snippy/__init__.py -> build/lib/multiqc/modules/snippy 2025-12-09T17:02:16,040 copying multiqc/modules/snippy/snippy.py -> build/lib/multiqc/modules/snippy 2025-12-09T17:02:16,043 creating build/lib/multiqc/modules/snpeff 2025-12-09T17:02:16,045 copying multiqc/modules/snpeff/__init__.py -> build/lib/multiqc/modules/snpeff 2025-12-09T17:02:16,048 copying multiqc/modules/snpeff/snpeff.py -> build/lib/multiqc/modules/snpeff 2025-12-09T17:02:16,051 creating build/lib/multiqc/modules/snpsplit 2025-12-09T17:02:16,053 copying multiqc/modules/snpsplit/__init__.py -> build/lib/multiqc/modules/snpsplit 2025-12-09T17:02:16,056 copying multiqc/modules/snpsplit/snpsplit.py -> build/lib/multiqc/modules/snpsplit 2025-12-09T17:02:16,060 creating build/lib/multiqc/modules/somalier 2025-12-09T17:02:16,061 copying multiqc/modules/somalier/__init__.py -> build/lib/multiqc/modules/somalier 2025-12-09T17:02:16,064 copying multiqc/modules/somalier/somalier.py -> build/lib/multiqc/modules/somalier 2025-12-09T17:02:16,069 creating build/lib/multiqc/modules/sompy 2025-12-09T17:02:16,070 copying multiqc/modules/sompy/__init__.py -> build/lib/multiqc/modules/sompy 2025-12-09T17:02:16,073 copying multiqc/modules/sompy/sompy.py -> build/lib/multiqc/modules/sompy 2025-12-09T17:02:16,076 creating build/lib/multiqc/modules/sortmerna 2025-12-09T17:02:16,078 copying multiqc/modules/sortmerna/__init__.py -> build/lib/multiqc/modules/sortmerna 2025-12-09T17:02:16,081 copying multiqc/modules/sortmerna/sortmerna.py -> build/lib/multiqc/modules/sortmerna 2025-12-09T17:02:16,084 creating build/lib/multiqc/modules/sourmash 2025-12-09T17:02:16,086 copying multiqc/modules/sourmash/__init__.py -> build/lib/multiqc/modules/sourmash 2025-12-09T17:02:16,089 copying multiqc/modules/sourmash/compare.py -> build/lib/multiqc/modules/sourmash 2025-12-09T17:02:16,092 copying multiqc/modules/sourmash/gather.py -> build/lib/multiqc/modules/sourmash 2025-12-09T17:02:16,097 copying multiqc/modules/sourmash/sourmash.py -> build/lib/multiqc/modules/sourmash 2025-12-09T17:02:16,099 creating build/lib/multiqc/modules/spaceranger 2025-12-09T17:02:16,101 copying multiqc/modules/spaceranger/__init__.py -> build/lib/multiqc/modules/spaceranger 2025-12-09T17:02:16,104 copying multiqc/modules/spaceranger/count.py -> build/lib/multiqc/modules/spaceranger 2025-12-09T17:02:16,108 copying multiqc/modules/spaceranger/spaceranger.py -> build/lib/multiqc/modules/spaceranger 2025-12-09T17:02:16,110 copying multiqc/modules/spaceranger/utils.py -> build/lib/multiqc/modules/spaceranger 2025-12-09T17:02:16,113 creating build/lib/multiqc/modules/stacks 2025-12-09T17:02:16,114 copying multiqc/modules/stacks/__init__.py -> build/lib/multiqc/modules/stacks 2025-12-09T17:02:16,118 copying multiqc/modules/stacks/stacks.py -> build/lib/multiqc/modules/stacks 2025-12-09T17:02:16,121 creating build/lib/multiqc/modules/star 2025-12-09T17:02:16,123 copying multiqc/modules/star/__init__.py -> build/lib/multiqc/modules/star 2025-12-09T17:02:16,126 copying multiqc/modules/star/star.py -> build/lib/multiqc/modules/star 2025-12-09T17:02:16,130 creating build/lib/multiqc/modules/supernova 2025-12-09T17:02:16,132 copying multiqc/modules/supernova/__init__.py -> build/lib/multiqc/modules/supernova 2025-12-09T17:02:16,135 copying multiqc/modules/supernova/supernova.py -> build/lib/multiqc/modules/supernova 2025-12-09T17:02:16,138 creating build/lib/multiqc/modules/sylphtax 2025-12-09T17:02:16,140 copying multiqc/modules/sylphtax/__init__.py -> build/lib/multiqc/modules/sylphtax 2025-12-09T17:02:16,143 copying multiqc/modules/sylphtax/sylphtax.py -> build/lib/multiqc/modules/sylphtax 2025-12-09T17:02:16,146 creating build/lib/multiqc/modules/telseq 2025-12-09T17:02:16,148 copying multiqc/modules/telseq/__init__.py -> build/lib/multiqc/modules/telseq 2025-12-09T17:02:16,151 copying multiqc/modules/telseq/telseq.py -> build/lib/multiqc/modules/telseq 2025-12-09T17:02:16,154 creating build/lib/multiqc/modules/theta2 2025-12-09T17:02:16,155 copying multiqc/modules/theta2/__init__.py -> build/lib/multiqc/modules/theta2 2025-12-09T17:02:16,157 copying multiqc/modules/theta2/theta2.py -> build/lib/multiqc/modules/theta2 2025-12-09T17:02:16,159 creating build/lib/multiqc/modules/tophat 2025-12-09T17:02:16,161 copying multiqc/modules/tophat/__init__.py -> build/lib/multiqc/modules/tophat 2025-12-09T17:02:16,163 copying multiqc/modules/tophat/tophat.py -> build/lib/multiqc/modules/tophat 2025-12-09T17:02:16,166 creating build/lib/multiqc/modules/trimmomatic 2025-12-09T17:02:16,167 copying multiqc/modules/trimmomatic/__init__.py -> build/lib/multiqc/modules/trimmomatic 2025-12-09T17:02:16,169 copying multiqc/modules/trimmomatic/trimmomatic.py -> build/lib/multiqc/modules/trimmomatic 2025-12-09T17:02:16,172 creating build/lib/multiqc/modules/truvari 2025-12-09T17:02:16,173 copying multiqc/modules/truvari/__init__.py -> build/lib/multiqc/modules/truvari 2025-12-09T17:02:16,175 copying multiqc/modules/truvari/truvari.py -> build/lib/multiqc/modules/truvari 2025-12-09T17:02:16,178 creating build/lib/multiqc/modules/umicollapse 2025-12-09T17:02:16,179 copying multiqc/modules/umicollapse/__init__.py -> build/lib/multiqc/modules/umicollapse 2025-12-09T17:02:16,182 copying multiqc/modules/umicollapse/umicollapse.py -> build/lib/multiqc/modules/umicollapse 2025-12-09T17:02:16,185 creating build/lib/multiqc/modules/umicollapse/tests 2025-12-09T17:02:16,186 copying multiqc/modules/umicollapse/tests/__init__.py -> build/lib/multiqc/modules/umicollapse/tests 2025-12-09T17:02:16,188 copying multiqc/modules/umicollapse/tests/test_umicollapse.py -> build/lib/multiqc/modules/umicollapse/tests 2025-12-09T17:02:16,191 creating build/lib/multiqc/modules/umitools 2025-12-09T17:02:16,192 copying multiqc/modules/umitools/__init__.py -> build/lib/multiqc/modules/umitools 2025-12-09T17:02:16,194 copying multiqc/modules/umitools/umitools.py -> build/lib/multiqc/modules/umitools 2025-12-09T17:02:16,198 creating build/lib/multiqc/modules/umitools/tests 2025-12-09T17:02:16,199 copying multiqc/modules/umitools/tests/__init__.py -> build/lib/multiqc/modules/umitools/tests 2025-12-09T17:02:16,202 copying multiqc/modules/umitools/tests/test_umitools.py -> build/lib/multiqc/modules/umitools/tests 2025-12-09T17:02:16,204 creating build/lib/multiqc/modules/varscan2 2025-12-09T17:02:16,205 copying multiqc/modules/varscan2/__init__.py -> build/lib/multiqc/modules/varscan2 2025-12-09T17:02:16,208 copying multiqc/modules/varscan2/varscan2.py -> build/lib/multiqc/modules/varscan2 2025-12-09T17:02:16,210 creating build/lib/multiqc/modules/vcftools 2025-12-09T17:02:16,212 copying multiqc/modules/vcftools/__init__.py -> build/lib/multiqc/modules/vcftools 2025-12-09T17:02:16,214 copying multiqc/modules/vcftools/relatedness2.py -> build/lib/multiqc/modules/vcftools 2025-12-09T17:02:16,217 copying multiqc/modules/vcftools/tstv_by_count.py -> build/lib/multiqc/modules/vcftools 2025-12-09T17:02:16,219 copying multiqc/modules/vcftools/tstv_by_qual.py -> build/lib/multiqc/modules/vcftools 2025-12-09T17:02:16,222 copying multiqc/modules/vcftools/tstv_summary.py -> build/lib/multiqc/modules/vcftools 2025-12-09T17:02:16,225 copying multiqc/modules/vcftools/vcftools.py -> build/lib/multiqc/modules/vcftools 2025-12-09T17:02:16,227 creating build/lib/multiqc/modules/vep 2025-12-09T17:02:16,228 copying multiqc/modules/vep/__init__.py -> build/lib/multiqc/modules/vep 2025-12-09T17:02:16,231 copying multiqc/modules/vep/vep.py -> build/lib/multiqc/modules/vep 2025-12-09T17:02:16,234 creating build/lib/multiqc/modules/verifybamid 2025-12-09T17:02:16,236 copying multiqc/modules/verifybamid/__init__.py -> build/lib/multiqc/modules/verifybamid 2025-12-09T17:02:16,238 copying multiqc/modules/verifybamid/verifybamid.py -> build/lib/multiqc/modules/verifybamid 2025-12-09T17:02:16,241 creating build/lib/multiqc/modules/vg 2025-12-09T17:02:16,243 copying multiqc/modules/vg/__init__.py -> build/lib/multiqc/modules/vg 2025-12-09T17:02:16,245 copying multiqc/modules/vg/vg.py -> build/lib/multiqc/modules/vg 2025-12-09T17:02:16,248 creating build/lib/multiqc/modules/whatshap 2025-12-09T17:02:16,250 copying multiqc/modules/whatshap/__init__.py -> build/lib/multiqc/modules/whatshap 2025-12-09T17:02:16,252 copying multiqc/modules/whatshap/whatshap.py -> build/lib/multiqc/modules/whatshap 2025-12-09T17:02:16,255 creating build/lib/multiqc/modules/xengsort 2025-12-09T17:02:16,256 copying multiqc/modules/xengsort/__init__.py -> build/lib/multiqc/modules/xengsort 2025-12-09T17:02:16,259 copying multiqc/modules/xengsort/xengsort.py -> build/lib/multiqc/modules/xengsort 2025-12-09T17:02:16,261 creating build/lib/multiqc/modules/xenium 2025-12-09T17:02:16,263 copying multiqc/modules/xenium/__init__.py -> build/lib/multiqc/modules/xenium 2025-12-09T17:02:16,265 copying multiqc/modules/xenium/xenium.py -> build/lib/multiqc/modules/xenium 2025-12-09T17:02:16,268 creating build/lib/multiqc/modules/xenome 2025-12-09T17:02:16,269 copying multiqc/modules/xenome/__init__.py -> build/lib/multiqc/modules/xenome 2025-12-09T17:02:16,272 copying multiqc/modules/xenome/xenome.py -> build/lib/multiqc/modules/xenome 2025-12-09T17:02:16,274 creating build/lib/multiqc/plots 2025-12-09T17:02:16,276 copying multiqc/plots/__init__.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,278 copying multiqc/plots/bargraph.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,282 copying multiqc/plots/box.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,285 copying multiqc/plots/heatmap.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,289 copying multiqc/plots/linegraph.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,293 copying multiqc/plots/plot.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,297 copying multiqc/plots/scatter.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,301 copying multiqc/plots/table.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,303 copying multiqc/plots/table_object.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,307 copying multiqc/plots/utils.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,310 copying multiqc/plots/violin.py -> build/lib/multiqc/plots 2025-12-09T17:02:16,313 creating build/lib/multiqc/templates 2025-12-09T17:02:16,314 copying multiqc/templates/__init__.py -> build/lib/multiqc/templates 2025-12-09T17:02:16,317 creating build/lib/multiqc/templates/default 2025-12-09T17:02:16,318 copying multiqc/templates/default/CLAUDE.md -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,321 copying multiqc/templates/default/README.md -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,324 copying multiqc/templates/default/__init__.py -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,326 copying multiqc/templates/default/base.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,329 copying multiqc/templates/default/content.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,332 copying multiqc/templates/default/foot.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,335 copying multiqc/templates/default/footer.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,337 copying multiqc/templates/default/general_stats.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,340 copying multiqc/templates/default/head.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,342 copying multiqc/templates/default/header.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,345 copying multiqc/templates/default/includes.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,348 copying multiqc/templates/default/nav.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,351 copying multiqc/templates/default/package-lock.json -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,355 copying multiqc/templates/default/package.json -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,357 copying multiqc/templates/default/theme_toggle.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,360 copying multiqc/templates/default/toolbox.html -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,363 copying multiqc/templates/default/vite.config.js -> build/lib/multiqc/templates/default 2025-12-09T17:02:16,365 creating build/lib/multiqc/templates/default/assets/img 2025-12-09T17:02:16,367 copying multiqc/templates/default/assets/img/Anthropic_logo.svg -> build/lib/multiqc/templates/default/assets/img 2025-12-09T17:02:16,369 copying multiqc/templates/default/assets/img/MultiQC_icon.svg -> build/lib/multiqc/templates/default/assets/img 2025-12-09T17:02:16,372 copying multiqc/templates/default/assets/img/MultiQC_logo.svg -> build/lib/multiqc/templates/default/assets/img 2025-12-09T17:02:16,374 copying multiqc/templates/default/assets/img/OpenAI_logo.svg -> build/lib/multiqc/templates/default/assets/img 2025-12-09T17:02:16,377 copying multiqc/templates/default/assets/img/Seqera_AI_icon.svg -> build/lib/multiqc/templates/default/assets/img 2025-12-09T17:02:16,379 copying multiqc/templates/default/assets/img/Seqera_logo.svg -> build/lib/multiqc/templates/default/assets/img 2025-12-09T17:02:16,382 creating build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,384 copying multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,387 copying multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,391 copying multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,395 copying multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,399 copying multiqc/templates/default/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,404 copying multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,408 copying multiqc/templates/default/assets/js/packages/plotly-3.1.2.custom.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,436 copying multiqc/templates/default/assets/js/packages/showdown.min.js -> build/lib/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:16,440 creating build/lib/multiqc/templates/default/compiled/css 2025-12-09T17:02:16,442 copying multiqc/templates/default/compiled/css/multiqc.min.css -> build/lib/multiqc/templates/default/compiled/css 2025-12-09T17:02:16,450 creating build/lib/multiqc/templates/default/compiled/js 2025-12-09T17:02:16,451 copying multiqc/templates/default/compiled/js/multiqc.min.js -> build/lib/multiqc/templates/default/compiled/js 2025-12-09T17:02:16,458 creating build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,460 copying multiqc/templates/default/src/js/ai-helpers.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,463 copying multiqc/templates/default/src/js/ai.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,466 copying multiqc/templates/default/src/js/color-mode.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,469 copying multiqc/templates/default/src/js/decompress.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,471 copying multiqc/templates/default/src/js/doi.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,474 copying multiqc/templates/default/src/js/flat.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,476 copying multiqc/templates/default/src/js/main-js.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,479 copying multiqc/templates/default/src/js/main.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,481 copying multiqc/templates/default/src/js/multiqc.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,484 copying multiqc/templates/default/src/js/plotting.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,487 copying multiqc/templates/default/src/js/render.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,489 copying multiqc/templates/default/src/js/statuses.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,492 copying multiqc/templates/default/src/js/tables.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,496 copying multiqc/templates/default/src/js/toolbox.js -> build/lib/multiqc/templates/default/src/js 2025-12-09T17:02:16,498 creating build/lib/multiqc/templates/default/src/js/plots 2025-12-09T17:02:16,499 copying multiqc/templates/default/src/js/plots/bar.js -> build/lib/multiqc/templates/default/src/js/plots 2025-12-09T17:02:16,502 copying multiqc/templates/default/src/js/plots/box.js -> build/lib/multiqc/templates/default/src/js/plots 2025-12-09T17:02:16,505 copying multiqc/templates/default/src/js/plots/heatmap.js -> build/lib/multiqc/templates/default/src/js/plots 2025-12-09T17:02:16,508 copying multiqc/templates/default/src/js/plots/line.js -> build/lib/multiqc/templates/default/src/js/plots 2025-12-09T17:02:16,510 copying multiqc/templates/default/src/js/plots/scatter.js -> build/lib/multiqc/templates/default/src/js/plots 2025-12-09T17:02:16,513 copying multiqc/templates/default/src/js/plots/violin.js -> build/lib/multiqc/templates/default/src/js/plots 2025-12-09T17:02:16,516 creating build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,517 copying multiqc/templates/default/src/js/toolbox/ai.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,520 copying multiqc/templates/default/src/js/toolbox/citations.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,523 copying multiqc/templates/default/src/js/toolbox/constants.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,525 copying multiqc/templates/default/src/js/toolbox/export.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,528 copying multiqc/templates/default/src/js/toolbox/filters.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,531 copying multiqc/templates/default/src/js/toolbox/help.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,534 copying multiqc/templates/default/src/js/toolbox/hide.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,537 copying multiqc/templates/default/src/js/toolbox/highlights.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,540 copying multiqc/templates/default/src/js/toolbox/rename.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,543 copying multiqc/templates/default/src/js/toolbox/save-load.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,546 copying multiqc/templates/default/src/js/toolbox/utils.js -> build/lib/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:16,549 creating build/lib/multiqc/templates/default/src/scss 2025-12-09T17:02:16,551 copying multiqc/templates/default/src/scss/_colors.scss -> build/lib/multiqc/templates/default/src/scss 2025-12-09T17:02:16,554 copying multiqc/templates/default/src/scss/_variables.scss -> build/lib/multiqc/templates/default/src/scss 2025-12-09T17:02:16,556 copying multiqc/templates/default/src/scss/custom.scss -> build/lib/multiqc/templates/default/src/scss 2025-12-09T17:02:16,560 copying multiqc/templates/default/src/scss/main.scss -> build/lib/multiqc/templates/default/src/scss 2025-12-09T17:02:16,563 creating build/lib/multiqc/templates/default/src/scss/themes/dark 2025-12-09T17:02:16,565 copying multiqc/templates/default/src/scss/themes/dark/_colors.scss -> build/lib/multiqc/templates/default/src/scss/themes/dark 2025-12-09T17:02:16,568 copying multiqc/templates/default/src/scss/themes/dark/custom.scss -> build/lib/multiqc/templates/default/src/scss/themes/dark 2025-12-09T17:02:16,570 creating build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,572 copying multiqc/templates/default/toolbox/about.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,575 copying multiqc/templates/default/toolbox/ai.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,579 copying multiqc/templates/default/toolbox/buttons.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,583 copying multiqc/templates/default/toolbox/citations.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,586 copying multiqc/templates/default/toolbox/export.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,589 copying multiqc/templates/default/toolbox/hide.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,592 copying multiqc/templates/default/toolbox/highlight.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,595 copying multiqc/templates/default/toolbox/rename.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,598 copying multiqc/templates/default/toolbox/save.html -> build/lib/multiqc/templates/default/toolbox 2025-12-09T17:02:16,600 creating build/lib/multiqc/templates/disco 2025-12-09T17:02:16,602 copying multiqc/templates/disco/README.md -> build/lib/multiqc/templates/disco 2025-12-09T17:02:16,605 copying multiqc/templates/disco/__init__.py -> build/lib/multiqc/templates/disco 2025-12-09T17:02:16,607 copying multiqc/templates/disco/package-lock.json -> build/lib/multiqc/templates/disco 2025-12-09T17:02:16,611 copying multiqc/templates/disco/package.json -> build/lib/multiqc/templates/disco 2025-12-09T17:02:16,614 copying multiqc/templates/disco/vite.config.js -> build/lib/multiqc/templates/disco 2025-12-09T17:02:16,617 creating build/lib/multiqc/templates/disco/compiled/css 2025-12-09T17:02:16,619 copying multiqc/templates/disco/compiled/css/multiqc.min.css -> build/lib/multiqc/templates/disco/compiled/css 2025-12-09T17:02:16,627 creating build/lib/multiqc/templates/disco/compiled/js 2025-12-09T17:02:16,629 copying multiqc/templates/disco/compiled/js/multiqc.min.js -> build/lib/multiqc/templates/disco/compiled/js 2025-12-09T17:02:16,637 creating build/lib/multiqc/templates/disco/src/js 2025-12-09T17:02:16,639 copying multiqc/templates/disco/src/js/main.js -> build/lib/multiqc/templates/disco/src/js 2025-12-09T17:02:16,642 creating build/lib/multiqc/templates/disco/src/scss 2025-12-09T17:02:16,643 copying multiqc/templates/disco/src/scss/_colors.scss -> build/lib/multiqc/templates/disco/src/scss 2025-12-09T17:02:16,646 copying multiqc/templates/disco/src/scss/custom.scss -> build/lib/multiqc/templates/disco/src/scss 2025-12-09T17:02:16,649 copying multiqc/templates/disco/src/scss/main.scss -> build/lib/multiqc/templates/disco/src/scss 2025-12-09T17:02:16,652 creating build/lib/multiqc/templates/gathered 2025-12-09T17:02:16,653 copying multiqc/templates/gathered/__init__.py -> build/lib/multiqc/templates/gathered 2025-12-09T17:02:16,656 copying multiqc/templates/gathered/content.html -> build/lib/multiqc/templates/gathered 2025-12-09T17:02:16,659 copying multiqc/templates/gathered/nav.html -> build/lib/multiqc/templates/gathered 2025-12-09T17:02:16,662 creating build/lib/multiqc/templates/geo 2025-12-09T17:02:16,664 copying multiqc/templates/geo/__init__.py -> build/lib/multiqc/templates/geo 2025-12-09T17:02:16,667 creating build/lib/multiqc/templates/geo/assets/css 2025-12-09T17:02:16,669 copying multiqc/templates/geo/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/geo/assets/css 2025-12-09T17:02:16,675 creating build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,677 copying multiqc/templates/geo/assets/img/emailme.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,680 copying multiqc/templates/geo/assets/img/flames.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,685 copying multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,688 copying multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,691 copying multiqc/templates/geo/assets/img/hot.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,695 copying multiqc/templates/geo/assets/img/mchammer.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,700 copying multiqc/templates/geo/assets/img/microfab.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,704 copying multiqc/templates/geo/assets/img/new.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,707 copying multiqc/templates/geo/assets/img/new2.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,710 copying multiqc/templates/geo/assets/img/progress.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,713 copying multiqc/templates/geo/assets/img/rainbow.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,716 copying multiqc/templates/geo/assets/img/stars.gif -> build/lib/multiqc/templates/geo/assets/img 2025-12-09T17:02:16,719 creating build/lib/multiqc/templates/original 2025-12-09T17:02:16,721 copying multiqc/templates/original/__init__.py -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,724 copying multiqc/templates/original/base.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,726 copying multiqc/templates/original/content.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,730 copying multiqc/templates/original/foot.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,733 copying multiqc/templates/original/footer.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,736 copying multiqc/templates/original/general_stats.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,739 copying multiqc/templates/original/head.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,743 copying multiqc/templates/original/header.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,746 copying multiqc/templates/original/includes.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,751 copying multiqc/templates/original/nav.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,754 copying multiqc/templates/original/toolbox.html -> build/lib/multiqc/templates/original 2025-12-09T17:02:16,758 creating build/lib/multiqc/templates/original/assets/css 2025-12-09T17:02:16,760 copying multiqc/templates/original/assets/css/bootstrap.min.css -> build/lib/multiqc/templates/original/assets/css 2025-12-09T17:02:16,766 copying multiqc/templates/original/assets/css/default_multiqc.css -> build/lib/multiqc/templates/original/assets/css 2025-12-09T17:02:16,769 copying multiqc/templates/original/assets/css/jquery.toast.css -> build/lib/multiqc/templates/original/assets/css 2025-12-09T17:02:16,773 creating build/lib/multiqc/templates/original/assets/fonts 2025-12-09T17:02:16,774 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.eot -> build/lib/multiqc/templates/original/assets/fonts 2025-12-09T17:02:16,778 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.svg -> build/lib/multiqc/templates/original/assets/fonts 2025-12-09T17:02:16,783 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.ttf -> build/lib/multiqc/templates/original/assets/fonts 2025-12-09T17:02:16,787 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff -> build/lib/multiqc/templates/original/assets/fonts 2025-12-09T17:02:16,790 copying multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff2 -> build/lib/multiqc/templates/original/assets/fonts 2025-12-09T17:02:16,793 creating build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,794 copying multiqc/templates/original/assets/img/MultiQC_logo.png -> build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,798 copying multiqc/templates/original/assets/img/MultiQC_logo_dark.svg -> build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,801 copying multiqc/templates/original/assets/img/favicon-16x16.png -> build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,803 copying multiqc/templates/original/assets/img/favicon-32x32.png -> build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,806 copying multiqc/templates/original/assets/img/favicon-96x96.png -> build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,808 copying multiqc/templates/original/assets/img/seqera_logo.png -> build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,811 copying multiqc/templates/original/assets/img/seqera_logo_mono.png -> build/lib/multiqc/templates/original/assets/img 2025-12-09T17:02:16,814 creating build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,815 copying multiqc/templates/original/assets/js/ai-helpers.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,818 copying multiqc/templates/original/assets/js/ai.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,821 copying multiqc/templates/original/assets/js/decompress.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,824 copying multiqc/templates/original/assets/js/flat.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,826 copying multiqc/templates/original/assets/js/multiqc.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,829 copying multiqc/templates/original/assets/js/plotting.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,832 copying multiqc/templates/original/assets/js/render.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,835 copying multiqc/templates/original/assets/js/tables.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,838 copying multiqc/templates/original/assets/js/toolbox.js -> build/lib/multiqc/templates/original/assets/js 2025-12-09T17:02:16,842 creating build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,843 copying multiqc/templates/original/assets/js/packages/FileSaver.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,846 copying multiqc/templates/original/assets/js/packages/bootstrap.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,850 copying multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,855 copying multiqc/templates/original/assets/js/packages/jquery-ui.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,859 copying multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,864 copying multiqc/templates/original/assets/js/packages/jquery.toast.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,868 copying multiqc/templates/original/assets/js/packages/jszip.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,874 copying multiqc/templates/original/assets/js/packages/pako_inflate.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:16,878 copying multiqc/templates/original/assets/js/packages/plotly-2.27.0.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:17,073 copying multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:17,135 copying multiqc/templates/original/assets/js/packages/showdown.min.js -> build/lib/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:17,138 creating build/lib/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:17,140 copying multiqc/templates/original/assets/js/plots/bar.js -> build/lib/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:17,143 copying multiqc/templates/original/assets/js/plots/box.js -> build/lib/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:17,145 copying multiqc/templates/original/assets/js/plots/heatmap.js -> build/lib/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:17,148 copying multiqc/templates/original/assets/js/plots/line.js -> build/lib/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:17,151 copying multiqc/templates/original/assets/js/plots/scatter.js -> build/lib/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:17,154 copying multiqc/templates/original/assets/js/plots/violin.js -> build/lib/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:17,157 creating build/lib/multiqc/templates/sections 2025-12-09T17:02:17,158 copying multiqc/templates/sections/__init__.py -> build/lib/multiqc/templates/sections 2025-12-09T17:02:17,162 copying multiqc/templates/sections/content.html -> build/lib/multiqc/templates/sections 2025-12-09T17:02:17,164 creating build/lib/multiqc/templates/simple 2025-12-09T17:02:17,165 copying multiqc/templates/simple/__init__.py -> build/lib/multiqc/templates/simple 2025-12-09T17:02:17,167 copying multiqc/templates/simple/foot.html -> build/lib/multiqc/templates/simple 2025-12-09T17:02:17,170 copying multiqc/templates/simple/footer.html -> build/lib/multiqc/templates/simple 2025-12-09T17:02:17,173 copying multiqc/templates/simple/header.html -> build/lib/multiqc/templates/simple 2025-12-09T17:02:17,176 copying multiqc/templates/simple/includes.html -> build/lib/multiqc/templates/simple 2025-12-09T17:02:17,178 copying multiqc/templates/simple/nav.html -> build/lib/multiqc/templates/simple 2025-12-09T17:02:17,181 copying multiqc/templates/simple/toolbox.html -> build/lib/multiqc/templates/simple 2025-12-09T17:02:17,184 creating build/lib/multiqc/utils 2025-12-09T17:02:17,185 copying multiqc/utils/__init__.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,189 copying multiqc/utils/config.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,191 copying multiqc/utils/config_schema.json -> build/lib/multiqc/utils 2025-12-09T17:02:17,194 copying multiqc/utils/config_schema.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,198 copying multiqc/utils/material_icons.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,200 copying multiqc/utils/megaqc.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,202 copying multiqc/utils/mqc_colour.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,206 copying multiqc/utils/pyaml_env.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,208 copying multiqc/utils/report.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,211 copying multiqc/utils/testing.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,213 copying multiqc/utils/util_functions.py -> build/lib/multiqc/utils 2025-12-09T17:02:17,216 creating build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,217 copying multiqc/utils/material_icons/LICENSE -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,219 copying multiqc/utils/material_icons/manifest.json -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,222 copying multiqc/utils/material_icons/mdi-alert-circle-outline.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,224 copying multiqc/utils/material_icons/mdi-alert-circle.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,227 copying multiqc/utils/material_icons/mdi-alert.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,229 copying multiqc/utils/material_icons/mdi-arrow-left.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,232 copying multiqc/utils/material_icons/mdi-arrow-right.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,234 copying multiqc/utils/material_icons/mdi-book-open-page-variant.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,237 copying multiqc/utils/material_icons/mdi-bookmark.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,239 copying multiqc/utils/material_icons/mdi-cancel.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,241 copying multiqc/utils/material_icons/mdi-chart-scatter-plot.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,243 copying multiqc/utils/material_icons/mdi-check-circle.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,246 copying multiqc/utils/material_icons/mdi-check.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,248 copying multiqc/utils/material_icons/mdi-checkbox-blank-outline.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,250 copying multiqc/utils/material_icons/mdi-checkbox-marked.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,252 copying multiqc/utils/material_icons/mdi-chevron-down.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,255 copying multiqc/utils/material_icons/mdi-chevron-left.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,257 copying multiqc/utils/material_icons/mdi-chevron-right.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,259 copying multiqc/utils/material_icons/mdi-chevron-up.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,262 copying multiqc/utils/material_icons/mdi-circle-half-full.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,265 copying multiqc/utils/material_icons/mdi-clock.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,269 copying multiqc/utils/material_icons/mdi-close.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,272 copying multiqc/utils/material_icons/mdi-cog.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,275 copying multiqc/utils/material_icons/mdi-content-copy.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,278 copying multiqc/utils/material_icons/mdi-content-save-outline.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,282 copying multiqc/utils/material_icons/mdi-content-save.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,285 copying multiqc/utils/material_icons/mdi-delete.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,288 copying multiqc/utils/material_icons/mdi-download.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,291 copying multiqc/utils/material_icons/mdi-equalizer.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,295 copying multiqc/utils/material_icons/mdi-eye-off.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,298 copying multiqc/utils/material_icons/mdi-eye.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,300 copying multiqc/utils/material_icons/mdi-file-document.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,303 copying multiqc/utils/material_icons/mdi-file.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,305 copying multiqc/utils/material_icons/mdi-filter.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,309 copying multiqc/utils/material_icons/mdi-folder-open.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,311 copying multiqc/utils/material_icons/mdi-folder.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,313 copying multiqc/utils/material_icons/mdi-format-align-left.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,316 copying multiqc/utils/material_icons/mdi-format-bold.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,318 copying multiqc/utils/material_icons/mdi-format-text.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,321 copying multiqc/utils/material_icons/mdi-github.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,323 copying multiqc/utils/material_icons/mdi-hand-pointing-up.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,325 copying multiqc/utils/material_icons/mdi-heart.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,327 copying multiqc/utils/material_icons/mdi-help-circle.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,330 copying multiqc/utils/material_icons/mdi-home.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,332 copying multiqc/utils/material_icons/mdi-image.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,334 copying multiqc/utils/material_icons/mdi-information.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,336 copying multiqc/utils/material_icons/mdi-link.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,338 copying multiqc/utils/material_icons/mdi-magnify-minus.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,341 copying multiqc/utils/material_icons/mdi-magnify-plus.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,343 copying multiqc/utils/material_icons/mdi-magnify.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,345 copying multiqc/utils/material_icons/mdi-menu.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,348 copying multiqc/utils/material_icons/mdi-minus.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,351 copying multiqc/utils/material_icons/mdi-pencil.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,353 copying multiqc/utils/material_icons/mdi-pin.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,356 copying multiqc/utils/material_icons/mdi-plus.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,358 copying multiqc/utils/material_icons/mdi-printer.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,361 copying multiqc/utils/material_icons/mdi-qrcode.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,363 copying multiqc/utils/material_icons/mdi-radiobox-blank.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,366 copying multiqc/utils/material_icons/mdi-radiobox-marked.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,368 copying multiqc/utils/material_icons/mdi-refresh.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,370 copying multiqc/utils/material_icons/mdi-school.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,373 copying multiqc/utils/material_icons/mdi-share.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,375 copying multiqc/utils/material_icons/mdi-sort.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,378 copying multiqc/utils/material_icons/mdi-star.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,380 copying multiqc/utils/material_icons/mdi-table.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,383 copying multiqc/utils/material_icons/mdi-thumb-down.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,386 copying multiqc/utils/material_icons/mdi-thumb-up.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,389 copying multiqc/utils/material_icons/mdi-view-column.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,391 copying multiqc/utils/material_icons/mdi-view-dashboard.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,394 copying multiqc/utils/material_icons/mdi-violin.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,396 copying multiqc/utils/material_icons/mdi-warning.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,399 copying multiqc/utils/material_icons/mdi-weather-night.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,401 copying multiqc/utils/material_icons/mdi-weather-sunny.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,404 copying multiqc/utils/material_icons/mdi-youtube.svg -> build/lib/multiqc/utils/material_icons 2025-12-09T17:02:17,419 installing to build/bdist.linux-armv7l/wheel 2025-12-09T17:02:17,420 running install 2025-12-09T17:02:17,445 running install_lib 2025-12-09T17:02:17,452 creating build/bdist.linux-armv7l/wheel 2025-12-09T17:02:17,455 creating build/bdist.linux-armv7l/wheel/multiqc 2025-12-09T17:02:17,457 creating build/bdist.linux-armv7l/wheel/multiqc/utils 2025-12-09T17:02:17,459 copying build/lib/multiqc/utils/mqc_colour.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,462 copying build/lib/multiqc/utils/config.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,465 copying build/lib/multiqc/utils/megaqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,467 copying build/lib/multiqc/utils/config_schema.json -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,475 creating build/bdist.linux-armv7l/wheel/multiqc/utils/material_icons 2025-12-09T17:02:17,477 copying build/lib/multiqc/utils/material_icons/mdi-content-save-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,479 copying build/lib/multiqc/utils/material_icons/LICENSE -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,481 copying build/lib/multiqc/utils/material_icons/mdi-chevron-right.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,483 copying build/lib/multiqc/utils/material_icons/mdi-alert-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,485 copying build/lib/multiqc/utils/material_icons/mdi-home.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,487 copying build/lib/multiqc/utils/material_icons/mdi-share.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,489 copying build/lib/multiqc/utils/material_icons/mdi-violin.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,491 copying build/lib/multiqc/utils/material_icons/mdi-view-column.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,493 copying build/lib/multiqc/utils/material_icons/mdi-qrcode.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,495 copying build/lib/multiqc/utils/material_icons/mdi-youtube.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,497 copying build/lib/multiqc/utils/material_icons/mdi-book-open-page-variant.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,498 copying build/lib/multiqc/utils/material_icons/mdi-alert.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,500 copying build/lib/multiqc/utils/material_icons/mdi-magnify-plus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,502 copying build/lib/multiqc/utils/material_icons/mdi-filter.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,504 copying build/lib/multiqc/utils/material_icons/mdi-weather-night.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,506 copying build/lib/multiqc/utils/material_icons/mdi-eye-off.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,508 copying build/lib/multiqc/utils/material_icons/mdi-check.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,510 copying build/lib/multiqc/utils/material_icons/mdi-thumb-down.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,512 copying build/lib/multiqc/utils/material_icons/mdi-minus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,514 copying build/lib/multiqc/utils/material_icons/mdi-alert-circle-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,516 copying build/lib/multiqc/utils/material_icons/mdi-close.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,518 copying build/lib/multiqc/utils/material_icons/mdi-format-align-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,519 copying build/lib/multiqc/utils/material_icons/mdi-circle-half-full.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,521 copying build/lib/multiqc/utils/material_icons/mdi-sort.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,523 copying build/lib/multiqc/utils/material_icons/mdi-weather-sunny.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,525 copying build/lib/multiqc/utils/material_icons/mdi-menu.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,527 copying build/lib/multiqc/utils/material_icons/mdi-arrow-right.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,529 copying build/lib/multiqc/utils/material_icons/mdi-clock.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,531 copying build/lib/multiqc/utils/material_icons/mdi-cog.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,532 copying build/lib/multiqc/utils/material_icons/mdi-radiobox-marked.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,534 copying build/lib/multiqc/utils/material_icons/mdi-arrow-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,536 copying build/lib/multiqc/utils/material_icons/mdi-school.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,538 copying build/lib/multiqc/utils/material_icons/mdi-heart.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,540 copying build/lib/multiqc/utils/material_icons/mdi-plus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,542 copying build/lib/multiqc/utils/material_icons/mdi-format-bold.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,543 copying build/lib/multiqc/utils/material_icons/mdi-magnify.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,545 copying build/lib/multiqc/utils/material_icons/mdi-folder.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,547 copying build/lib/multiqc/utils/material_icons/mdi-content-copy.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,549 copying build/lib/multiqc/utils/material_icons/mdi-bookmark.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,551 copying build/lib/multiqc/utils/material_icons/mdi-radiobox-blank.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,552 copying build/lib/multiqc/utils/material_icons/manifest.json -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,554 copying build/lib/multiqc/utils/material_icons/mdi-cancel.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,556 copying build/lib/multiqc/utils/material_icons/mdi-chart-scatter-plot.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,558 copying build/lib/multiqc/utils/material_icons/mdi-hand-pointing-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,560 copying build/lib/multiqc/utils/material_icons/mdi-file-document.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,562 copying build/lib/multiqc/utils/material_icons/mdi-eye.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,565 copying build/lib/multiqc/utils/material_icons/mdi-pencil.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,566 copying build/lib/multiqc/utils/material_icons/mdi-content-save.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,568 copying build/lib/multiqc/utils/material_icons/mdi-star.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,570 copying build/lib/multiqc/utils/material_icons/mdi-link.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,572 copying build/lib/multiqc/utils/material_icons/mdi-checkbox-marked.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,574 copying build/lib/multiqc/utils/material_icons/mdi-chevron-down.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,576 copying build/lib/multiqc/utils/material_icons/mdi-equalizer.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,577 copying build/lib/multiqc/utils/material_icons/mdi-delete.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,579 copying build/lib/multiqc/utils/material_icons/mdi-github.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,581 copying build/lib/multiqc/utils/material_icons/mdi-checkbox-blank-outline.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,583 copying build/lib/multiqc/utils/material_icons/mdi-chevron-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,585 copying build/lib/multiqc/utils/material_icons/mdi-refresh.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,587 copying build/lib/multiqc/utils/material_icons/mdi-folder-open.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,589 copying build/lib/multiqc/utils/material_icons/mdi-file.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,590 copying build/lib/multiqc/utils/material_icons/mdi-warning.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,592 copying build/lib/multiqc/utils/material_icons/mdi-format-text.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,594 copying build/lib/multiqc/utils/material_icons/mdi-thumb-up.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,596 copying build/lib/multiqc/utils/material_icons/mdi-magnify-minus.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,598 copying build/lib/multiqc/utils/material_icons/mdi-image.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,599 copying build/lib/multiqc/utils/material_icons/mdi-printer.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,601 copying build/lib/multiqc/utils/material_icons/mdi-help-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,603 copying build/lib/multiqc/utils/material_icons/mdi-pin.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,605 copying build/lib/multiqc/utils/material_icons/mdi-download.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,607 copying build/lib/multiqc/utils/material_icons/mdi-chevron-left.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,608 copying build/lib/multiqc/utils/material_icons/mdi-information.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,610 copying build/lib/multiqc/utils/material_icons/mdi-view-dashboard.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,612 copying build/lib/multiqc/utils/material_icons/mdi-check-circle.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,614 copying build/lib/multiqc/utils/material_icons/mdi-table.svg -> build/bdist.linux-armv7l/wheel/./multiqc/utils/material_icons 2025-12-09T17:02:17,616 copying build/lib/multiqc/utils/util_functions.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,618 copying build/lib/multiqc/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,620 copying build/lib/multiqc/utils/config_schema.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,623 copying build/lib/multiqc/utils/pyaml_env.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,625 copying build/lib/multiqc/utils/material_icons.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,627 copying build/lib/multiqc/utils/testing.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,628 copying build/lib/multiqc/utils/report.py -> build/bdist.linux-armv7l/wheel/./multiqc/utils 2025-12-09T17:02:17,631 copying build/lib/multiqc/config_defaults.yaml -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:17,637 creating build/bdist.linux-armv7l/wheel/multiqc/modules 2025-12-09T17:02:17,638 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gopeaks 2025-12-09T17:02:17,640 copying build/lib/multiqc/modules/gopeaks/gopeaks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gopeaks 2025-12-09T17:02:17,642 copying build/lib/multiqc/modules/gopeaks/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gopeaks 2025-12-09T17:02:17,644 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hops 2025-12-09T17:02:17,645 copying build/lib/multiqc/modules/hops/hops.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hops 2025-12-09T17:02:17,648 copying build/lib/multiqc/modules/hops/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hops 2025-12-09T17:02:17,651 creating build/bdist.linux-armv7l/wheel/multiqc/modules/salmon 2025-12-09T17:02:17,652 copying build/lib/multiqc/modules/salmon/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/salmon 2025-12-09T17:02:17,655 copying build/lib/multiqc/modules/salmon/salmon.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/salmon 2025-12-09T17:02:17,658 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pychopper 2025-12-09T17:02:17,659 copying build/lib/multiqc/modules/pychopper/pychopper.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pychopper 2025-12-09T17:02:17,661 copying build/lib/multiqc/modules/pychopper/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pychopper 2025-12-09T17:02:17,663 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ganon 2025-12-09T17:02:17,664 copying build/lib/multiqc/modules/ganon/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ganon 2025-12-09T17:02:17,666 copying build/lib/multiqc/modules/ganon/ganon.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ganon 2025-12-09T17:02:17,669 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqwho 2025-12-09T17:02:17,670 copying build/lib/multiqc/modules/seqwho/seqwho.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqwho 2025-12-09T17:02:17,673 copying build/lib/multiqc/modules/seqwho/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqwho 2025-12-09T17:02:17,675 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie1 2025-12-09T17:02:17,676 copying build/lib/multiqc/modules/bowtie1/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie1 2025-12-09T17:02:17,678 copying build/lib/multiqc/modules/bowtie1/bowtie1.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie1 2025-12-09T17:02:17,681 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ataqv 2025-12-09T17:02:17,682 copying build/lib/multiqc/modules/ataqv/ataqv.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ataqv 2025-12-09T17:02:17,685 copying build/lib/multiqc/modules/ataqv/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ataqv 2025-12-09T17:02:17,687 creating build/bdist.linux-armv7l/wheel/multiqc/modules/metaphlan 2025-12-09T17:02:17,688 copying build/lib/multiqc/modules/metaphlan/metaphlan.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/metaphlan 2025-12-09T17:02:17,691 copying build/lib/multiqc/modules/metaphlan/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/metaphlan 2025-12-09T17:02:17,693 creating build/bdist.linux-armv7l/wheel/multiqc/modules/leehom 2025-12-09T17:02:17,694 copying build/lib/multiqc/modules/leehom/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/leehom 2025-12-09T17:02:17,696 copying build/lib/multiqc/modules/leehom/leehom.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/leehom 2025-12-09T17:02:17,698 creating build/bdist.linux-armv7l/wheel/multiqc/modules/multivcfanalyzer 2025-12-09T17:02:17,699 copying build/lib/multiqc/modules/multivcfanalyzer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/multivcfanalyzer 2025-12-09T17:02:17,701 copying build/lib/multiqc/modules/multivcfanalyzer/multivcfanalyzer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/multivcfanalyzer 2025-12-09T17:02:17,704 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger_arc 2025-12-09T17:02:17,705 copying build/lib/multiqc/modules/cellranger_arc/cellranger_arc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2025-12-09T17:02:17,708 copying build/lib/multiqc/modules/cellranger_arc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2025-12-09T17:02:17,711 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger_arc/tests 2025-12-09T17:02:17,712 copying build/lib/multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc/tests 2025-12-09T17:02:17,714 copying build/lib/multiqc/modules/cellranger_arc/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc/tests 2025-12-09T17:02:17,715 copying build/lib/multiqc/modules/cellranger_arc/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger_arc 2025-12-09T17:02:17,718 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umicollapse 2025-12-09T17:02:17,719 copying build/lib/multiqc/modules/umicollapse/umicollapse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse 2025-12-09T17:02:17,722 copying build/lib/multiqc/modules/umicollapse/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse 2025-12-09T17:02:17,724 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umicollapse/tests 2025-12-09T17:02:17,725 copying build/lib/multiqc/modules/umicollapse/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse/tests 2025-12-09T17:02:17,727 copying build/lib/multiqc/modules/umicollapse/tests/test_umicollapse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umicollapse/tests 2025-12-09T17:02:17,730 creating build/bdist.linux-armv7l/wheel/multiqc/modules/slamdunk 2025-12-09T17:02:17,731 copying build/lib/multiqc/modules/slamdunk/slamdunk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/slamdunk 2025-12-09T17:02:17,734 copying build/lib/multiqc/modules/slamdunk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/slamdunk 2025-12-09T17:02:17,736 creating build/bdist.linux-armv7l/wheel/multiqc/modules/htseq 2025-12-09T17:02:17,737 copying build/lib/multiqc/modules/htseq/htseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/htseq 2025-12-09T17:02:17,740 copying build/lib/multiqc/modules/htseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/htseq 2025-12-09T17:02:17,742 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kaiju 2025-12-09T17:02:17,744 copying build/lib/multiqc/modules/kaiju/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kaiju 2025-12-09T17:02:17,746 copying build/lib/multiqc/modules/kaiju/kaiju.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kaiju 2025-12-09T17:02:17,748 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clipandmerge 2025-12-09T17:02:17,749 copying build/lib/multiqc/modules/clipandmerge/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clipandmerge 2025-12-09T17:02:17,751 copying build/lib/multiqc/modules/clipandmerge/clipandmerge.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clipandmerge 2025-12-09T17:02:17,754 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sargasso 2025-12-09T17:02:17,755 copying build/lib/multiqc/modules/sargasso/sargasso.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sargasso 2025-12-09T17:02:17,758 copying build/lib/multiqc/modules/sargasso/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sargasso 2025-12-09T17:02:17,760 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sickle 2025-12-09T17:02:17,761 copying build/lib/multiqc/modules/sickle/sickle.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sickle 2025-12-09T17:02:17,764 copying build/lib/multiqc/modules/sickle/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sickle 2025-12-09T17:02:17,766 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vg 2025-12-09T17:02:17,767 copying build/lib/multiqc/modules/vg/vg.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vg 2025-12-09T17:02:17,770 copying build/lib/multiqc/modules/vg/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vg 2025-12-09T17:02:17,772 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mtnucratio 2025-12-09T17:02:17,773 copying build/lib/multiqc/modules/mtnucratio/mtnucratio.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mtnucratio 2025-12-09T17:02:17,775 copying build/lib/multiqc/modules/mtnucratio/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mtnucratio 2025-12-09T17:02:17,778 creating build/bdist.linux-armv7l/wheel/multiqc/modules/featurecounts 2025-12-09T17:02:17,779 copying build/lib/multiqc/modules/featurecounts/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/featurecounts 2025-12-09T17:02:17,781 copying build/lib/multiqc/modules/featurecounts/featurecounts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/featurecounts 2025-12-09T17:02:17,784 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sambamba 2025-12-09T17:02:17,785 copying build/lib/multiqc/modules/sambamba/sambamba.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2025-12-09T17:02:17,787 copying build/lib/multiqc/modules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2025-12-09T17:02:17,789 copying build/lib/multiqc/modules/sambamba/markdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sambamba 2025-12-09T17:02:17,792 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard 2025-12-09T17:02:17,793 copying build/lib/multiqc/modules/picard/VariantCallingMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:17,796 copying build/lib/multiqc/modules/picard/util.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:17,798 copying build/lib/multiqc/modules/picard/IlluminaBasecallingMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:17,801 copying build/lib/multiqc/modules/picard/ValidateSamFile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:17,803 copying build/lib/multiqc/modules/picard/MarkDuplicates.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:17,806 copying build/lib/multiqc/modules/picard/WgsMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:17,808 copying build/lib/multiqc/modules/picard/HsMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:17,811 copying build/lib/multiqc/modules/picard/OxoGMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,032 copying build/lib/multiqc/modules/picard/QualityByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,034 copying build/lib/multiqc/modules/picard/QualityScoreDistributionMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,036 copying build/lib/multiqc/modules/picard/QualityYieldMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,038 copying build/lib/multiqc/modules/picard/ExtractIlluminaBarcodes.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,040 copying build/lib/multiqc/modules/picard/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,042 copying build/lib/multiqc/modules/picard/InsertSizeMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,044 copying build/lib/multiqc/modules/picard/AlignmentSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,046 copying build/lib/multiqc/modules/picard/TargetedPcrMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,048 copying build/lib/multiqc/modules/picard/RnaSeqMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,051 copying build/lib/multiqc/modules/picard/RrbsSummaryMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,053 copying build/lib/multiqc/modules/picard/BaseDistributionByCycleMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,055 copying build/lib/multiqc/modules/picard/IlluminaLaneMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,058 copying build/lib/multiqc/modules/picard/GcBiasMetrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,060 copying build/lib/multiqc/modules/picard/CrosscheckFingerprints.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,063 creating build/bdist.linux-armv7l/wheel/multiqc/modules/picard/tests 2025-12-09T17:02:18,064 copying build/lib/multiqc/modules/picard/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard/tests 2025-12-09T17:02:18,066 copying build/lib/multiqc/modules/picard/tests/test_picard.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard/tests 2025-12-09T17:02:18,068 copying build/lib/multiqc/modules/picard/picard.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,071 copying build/lib/multiqc/modules/picard/MarkIlluminaAdapters.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/picard 2025-12-09T17:02:18,073 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtop 2025-12-09T17:02:18,074 copying build/lib/multiqc/modules/mirtop/mirtop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtop 2025-12-09T17:02:18,077 copying build/lib/multiqc/modules/mirtop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtop 2025-12-09T17:02:18,079 creating build/bdist.linux-armv7l/wheel/multiqc/modules/adapterremoval 2025-12-09T17:02:18,080 copying build/lib/multiqc/modules/adapterremoval/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/adapterremoval 2025-12-09T17:02:18,083 copying build/lib/multiqc/modules/adapterremoval/adapterremoval.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/adapterremoval 2025-12-09T17:02:18,086 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jcvi 2025-12-09T17:02:18,087 copying build/lib/multiqc/modules/jcvi/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jcvi 2025-12-09T17:02:18,089 copying build/lib/multiqc/modules/jcvi/jcvi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jcvi 2025-12-09T17:02:18,092 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nextclade 2025-12-09T17:02:18,093 copying build/lib/multiqc/modules/nextclade/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nextclade 2025-12-09T17:02:18,095 copying build/lib/multiqc/modules/nextclade/nextclade.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nextclade 2025-12-09T17:02:18,098 creating build/bdist.linux-armv7l/wheel/multiqc/modules/trimmomatic 2025-12-09T17:02:18,099 copying build/lib/multiqc/modules/trimmomatic/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trimmomatic 2025-12-09T17:02:18,101 copying build/lib/multiqc/modules/trimmomatic/trimmomatic.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/trimmomatic 2025-12-09T17:02:18,104 creating build/bdist.linux-armv7l/wheel/multiqc/modules/anglerfish 2025-12-09T17:02:18,105 copying build/lib/multiqc/modules/anglerfish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/anglerfish 2025-12-09T17:02:18,107 copying build/lib/multiqc/modules/anglerfish/anglerfish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/anglerfish 2025-12-09T17:02:18,110 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mgikit 2025-12-09T17:02:18,111 copying build/lib/multiqc/modules/mgikit/mgikit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mgikit 2025-12-09T17:02:18,114 copying build/lib/multiqc/modules/mgikit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mgikit 2025-12-09T17:02:18,116 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbduk 2025-12-09T17:02:18,117 copying build/lib/multiqc/modules/bbduk/bbduk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbduk 2025-12-09T17:02:18,119 copying build/lib/multiqc/modules/bbduk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbduk 2025-12-09T17:02:18,122 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sexdeterrmine 2025-12-09T17:02:18,123 copying build/lib/multiqc/modules/sexdeterrmine/sexdeterrmine.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sexdeterrmine 2025-12-09T17:02:18,125 copying build/lib/multiqc/modules/sexdeterrmine/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sexdeterrmine 2025-12-09T17:02:18,128 creating build/bdist.linux-armv7l/wheel/multiqc/modules/peddy 2025-12-09T17:02:18,129 copying build/lib/multiqc/modules/peddy/peddy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/peddy 2025-12-09T17:02:18,131 copying build/lib/multiqc/modules/peddy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/peddy 2025-12-09T17:02:18,134 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenome 2025-12-09T17:02:18,135 copying build/lib/multiqc/modules/xenome/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenome 2025-12-09T17:02:18,137 copying build/lib/multiqc/modules/xenome/xenome.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenome 2025-12-09T17:02:18,140 creating build/bdist.linux-armv7l/wheel/multiqc/modules/truvari 2025-12-09T17:02:18,141 copying build/lib/multiqc/modules/truvari/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/truvari 2025-12-09T17:02:18,143 copying build/lib/multiqc/modules/truvari/truvari.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/truvari 2025-12-09T17:02:18,146 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqfu 2025-12-09T17:02:18,148 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqfu/test 2025-12-09T17:02:18,149 copying build/lib/multiqc/modules/seqfu/test/test_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu/test 2025-12-09T17:02:18,151 copying build/lib/multiqc/modules/seqfu/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2025-12-09T17:02:18,154 copying build/lib/multiqc/modules/seqfu/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2025-12-09T17:02:18,156 copying build/lib/multiqc/modules/seqfu/seqfu.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqfu 2025-12-09T17:02:18,159 creating build/bdist.linux-armv7l/wheel/multiqc/modules/goleft_indexcov 2025-12-09T17:02:18,160 copying build/lib/multiqc/modules/goleft_indexcov/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/goleft_indexcov 2025-12-09T17:02:18,162 copying build/lib/multiqc/modules/goleft_indexcov/goleft_indexcov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/goleft_indexcov 2025-12-09T17:02:18,165 creating build/bdist.linux-armv7l/wheel/multiqc/modules/filtlong 2025-12-09T17:02:18,166 copying build/lib/multiqc/modules/filtlong/filtlong.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/filtlong 2025-12-09T17:02:18,169 copying build/lib/multiqc/modules/filtlong/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/filtlong 2025-12-09T17:02:18,171 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicpro 2025-12-09T17:02:18,172 copying build/lib/multiqc/modules/hicpro/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicpro 2025-12-09T17:02:18,174 copying build/lib/multiqc/modules/hicpro/hicpro.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicpro 2025-12-09T17:02:18,178 creating build/bdist.linux-armv7l/wheel/multiqc/modules/preseq 2025-12-09T17:02:18,179 copying build/lib/multiqc/modules/preseq/preseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/preseq 2025-12-09T17:02:18,182 copying build/lib/multiqc/modules/preseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/preseq 2025-12-09T17:02:18,185 creating build/bdist.linux-armv7l/wheel/multiqc/modules/tophat 2025-12-09T17:02:18,186 copying build/lib/multiqc/modules/tophat/tophat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/tophat 2025-12-09T17:02:18,188 copying build/lib/multiqc/modules/tophat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/tophat 2025-12-09T17:02:18,191 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rsem 2025-12-09T17:02:18,192 copying build/lib/multiqc/modules/rsem/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rsem 2025-12-09T17:02:18,194 copying build/lib/multiqc/modules/rsem/rsem.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rsem 2025-12-09T17:02:18,197 creating build/bdist.linux-armv7l/wheel/multiqc/modules/theta2 2025-12-09T17:02:18,198 copying build/lib/multiqc/modules/theta2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/theta2 2025-12-09T17:02:18,200 copying build/lib/multiqc/modules/theta2/theta2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/theta2 2025-12-09T17:02:18,202 creating build/bdist.linux-armv7l/wheel/multiqc/modules/motus 2025-12-09T17:02:18,204 copying build/lib/multiqc/modules/motus/motus.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/motus 2025-12-09T17:02:18,206 copying build/lib/multiqc/modules/motus/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/motus 2025-12-09T17:02:18,209 creating build/bdist.linux-armv7l/wheel/multiqc/modules/quast 2025-12-09T17:02:18,210 copying build/lib/multiqc/modules/quast/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/quast 2025-12-09T17:02:18,212 copying build/lib/multiqc/modules/quast/quast.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/quast 2025-12-09T17:02:18,215 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bases2fastq 2025-12-09T17:02:18,216 copying build/lib/multiqc/modules/bases2fastq/plot_runs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2025-12-09T17:02:18,219 copying build/lib/multiqc/modules/bases2fastq/plot_samples.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2025-12-09T17:02:18,221 copying build/lib/multiqc/modules/bases2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2025-12-09T17:02:18,223 copying build/lib/multiqc/modules/bases2fastq/bases2fastq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2025-12-09T17:02:18,226 copying build/lib/multiqc/modules/bases2fastq/plot_project_runs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bases2fastq 2025-12-09T17:02:18,229 creating build/bdist.linux-armv7l/wheel/multiqc/modules/percolator 2025-12-09T17:02:18,230 copying build/lib/multiqc/modules/percolator/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/percolator 2025-12-09T17:02:18,232 copying build/lib/multiqc/modules/percolator/percolator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/percolator 2025-12-09T17:02:18,235 creating build/bdist.linux-armv7l/wheel/multiqc/modules/deeptools 2025-12-09T17:02:18,236 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,238 copying build/lib/multiqc/modules/deeptools/plotCoverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,241 copying build/lib/multiqc/modules/deeptools/plotCorrelation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,243 copying build/lib/multiqc/modules/deeptools/plotEnrichment.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,245 copying build/lib/multiqc/modules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,246 copying build/lib/multiqc/modules/deeptools/deeptools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,249 copying build/lib/multiqc/modules/deeptools/bamPEFragmentSizeTable.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,251 copying build/lib/multiqc/modules/deeptools/plotFingerprint.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,254 copying build/lib/multiqc/modules/deeptools/plotProfile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,256 copying build/lib/multiqc/modules/deeptools/estimateReadFiltering.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,259 copying build/lib/multiqc/modules/deeptools/plotPCA.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/deeptools 2025-12-09T17:02:18,261 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flexbar 2025-12-09T17:02:18,262 copying build/lib/multiqc/modules/flexbar/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flexbar 2025-12-09T17:02:18,264 copying build/lib/multiqc/modules/flexbar/flexbar.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flexbar 2025-12-09T17:02:18,267 creating build/bdist.linux-armv7l/wheel/multiqc/modules/lima 2025-12-09T17:02:18,268 copying build/lib/multiqc/modules/lima/lima.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/lima 2025-12-09T17:02:18,271 copying build/lib/multiqc/modules/lima/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/lima 2025-12-09T17:02:18,274 creating build/bdist.linux-armv7l/wheel/multiqc/modules/humid 2025-12-09T17:02:18,275 copying build/lib/multiqc/modules/humid/neighbours.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2025-12-09T17:02:18,277 copying build/lib/multiqc/modules/humid/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2025-12-09T17:02:18,280 copying build/lib/multiqc/modules/humid/humid.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2025-12-09T17:02:18,282 copying build/lib/multiqc/modules/humid/counts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2025-12-09T17:02:18,283 copying build/lib/multiqc/modules/humid/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2025-12-09T17:02:18,285 copying build/lib/multiqc/modules/humid/clusters.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/humid 2025-12-09T17:02:18,288 creating build/bdist.linux-armv7l/wheel/multiqc/modules/odgi 2025-12-09T17:02:18,289 copying build/lib/multiqc/modules/odgi/odgi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/odgi 2025-12-09T17:02:18,292 copying build/lib/multiqc/modules/odgi/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/odgi 2025-12-09T17:02:18,294 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen 2025-12-09T17:02:18,296 copying build/lib/multiqc/modules/dragen/rna_transcript_cov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,298 copying build/lib/multiqc/modules/dragen/sc_rna_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,300 copying build/lib/multiqc/modules/dragen/trimmer_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,301 copying build/lib/multiqc/modules/dragen/coverage_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,305 copying build/lib/multiqc/modules/dragen/coverage_per_contig.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,308 copying build/lib/multiqc/modules/dragen/dragen_gc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,310 copying build/lib/multiqc/modules/dragen/coverage_hist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,313 copying build/lib/multiqc/modules/dragen/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,314 copying build/lib/multiqc/modules/dragen/vc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,317 copying build/lib/multiqc/modules/dragen/time_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,319 copying build/lib/multiqc/modules/dragen/overall_mean_cov.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,322 copying build/lib/multiqc/modules/dragen/dragen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,324 copying build/lib/multiqc/modules/dragen/ploidy_estimation_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,326 copying build/lib/multiqc/modules/dragen/mapping_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,329 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen/tests 2025-12-09T17:02:18,330 copying build/lib/multiqc/modules/dragen/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen/tests 2025-12-09T17:02:18,332 copying build/lib/multiqc/modules/dragen/tests/test_dragen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen/tests 2025-12-09T17:02:18,334 copying build/lib/multiqc/modules/dragen/rna_quant_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,336 copying build/lib/multiqc/modules/dragen/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,339 copying build/lib/multiqc/modules/dragen/fragment_length.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,341 copying build/lib/multiqc/modules/dragen/sc_atac_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen 2025-12-09T17:02:18,343 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sortmerna 2025-12-09T17:02:18,344 copying build/lib/multiqc/modules/sortmerna/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sortmerna 2025-12-09T17:02:18,346 copying build/lib/multiqc/modules/sortmerna/sortmerna.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sortmerna 2025-12-09T17:02:18,349 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nonpareil 2025-12-09T17:02:18,350 copying build/lib/multiqc/modules/nonpareil/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nonpareil 2025-12-09T17:02:18,352 copying build/lib/multiqc/modules/nonpareil/nonpareil.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nonpareil 2025-12-09T17:02:18,355 creating build/bdist.linux-armv7l/wheel/multiqc/modules/phantompeakqualtools 2025-12-09T17:02:18,356 copying build/lib/multiqc/modules/phantompeakqualtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/phantompeakqualtools 2025-12-09T17:02:18,358 copying build/lib/multiqc/modules/phantompeakqualtools/phantompeakqualtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/phantompeakqualtools 2025-12-09T17:02:18,360 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpsplit 2025-12-09T17:02:18,362 copying build/lib/multiqc/modules/snpsplit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpsplit 2025-12-09T17:02:18,364 copying build/lib/multiqc/modules/snpsplit/snpsplit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpsplit 2025-12-09T17:02:18,367 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cells2stats 2025-12-09T17:02:18,368 copying build/lib/multiqc/modules/cells2stats/queries.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2025-12-09T17:02:18,372 copying build/lib/multiqc/modules/cells2stats/cells2stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2025-12-09T17:02:18,375 copying build/lib/multiqc/modules/cells2stats/cells2stats_tables.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2025-12-09T17:02:18,378 copying build/lib/multiqc/modules/cells2stats/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2025-12-09T17:02:18,381 copying build/lib/multiqc/modules/cells2stats/cells2stats_bar_plots.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2025-12-09T17:02:18,384 copying build/lib/multiqc/modules/cells2stats/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cells2stats 2025-12-09T17:02:18,387 creating build/bdist.linux-armv7l/wheel/multiqc/modules/telseq 2025-12-09T17:02:18,388 copying build/lib/multiqc/modules/telseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/telseq 2025-12-09T17:02:18,391 copying build/lib/multiqc/modules/telseq/telseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/telseq 2025-12-09T17:02:18,394 creating build/bdist.linux-armv7l/wheel/multiqc/modules/optitype 2025-12-09T17:02:18,396 copying build/lib/multiqc/modules/optitype/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/optitype 2025-12-09T17:02:18,398 copying build/lib/multiqc/modules/optitype/optitype.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/optitype 2025-12-09T17:02:18,402 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sourmash 2025-12-09T17:02:18,403 copying build/lib/multiqc/modules/sourmash/sourmash.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2025-12-09T17:02:18,405 copying build/lib/multiqc/modules/sourmash/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2025-12-09T17:02:18,408 copying build/lib/multiqc/modules/sourmash/gather.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2025-12-09T17:02:18,411 copying build/lib/multiqc/modules/sourmash/compare.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sourmash 2025-12-09T17:02:18,414 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribotish 2025-12-09T17:02:18,415 copying build/lib/multiqc/modules/ribotish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish 2025-12-09T17:02:18,418 copying build/lib/multiqc/modules/ribotish/ribotish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish 2025-12-09T17:02:18,422 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ribotish/tests 2025-12-09T17:02:18,424 copying build/lib/multiqc/modules/ribotish/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish/tests 2025-12-09T17:02:18,426 copying build/lib/multiqc/modules/ribotish/tests/test_ribotish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ribotish/tests 2025-12-09T17:02:18,430 creating build/bdist.linux-armv7l/wheel/multiqc/modules/interop 2025-12-09T17:02:18,431 copying build/lib/multiqc/modules/interop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/interop 2025-12-09T17:02:18,434 copying build/lib/multiqc/modules/interop/interop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/interop 2025-12-09T17:02:18,438 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bismark 2025-12-09T17:02:18,440 copying build/lib/multiqc/modules/bismark/bismark.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bismark 2025-12-09T17:02:18,444 copying build/lib/multiqc/modules/bismark/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bismark 2025-12-09T17:02:18,447 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sylphtax 2025-12-09T17:02:18,448 copying build/lib/multiqc/modules/sylphtax/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sylphtax 2025-12-09T17:02:18,451 copying build/lib/multiqc/modules/sylphtax/sylphtax.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sylphtax 2025-12-09T17:02:18,454 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pycoqc 2025-12-09T17:02:18,456 copying build/lib/multiqc/modules/pycoqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pycoqc 2025-12-09T17:02:18,458 copying build/lib/multiqc/modules/pycoqc/pycoqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pycoqc 2025-12-09T17:02:18,462 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastp 2025-12-09T17:02:18,463 copying build/lib/multiqc/modules/fastp/fastp.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastp 2025-12-09T17:02:18,468 copying build/lib/multiqc/modules/fastp/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastp 2025-12-09T17:02:18,472 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sompy 2025-12-09T17:02:18,473 copying build/lib/multiqc/modules/sompy/sompy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sompy 2025-12-09T17:02:18,476 copying build/lib/multiqc/modules/sompy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sompy 2025-12-09T17:02:18,479 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cutadapt 2025-12-09T17:02:18,480 copying build/lib/multiqc/modules/cutadapt/cutadapt.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cutadapt 2025-12-09T17:02:18,483 copying build/lib/multiqc/modules/cutadapt/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cutadapt 2025-12-09T17:02:18,485 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hisat2 2025-12-09T17:02:18,486 copying build/lib/multiqc/modules/hisat2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hisat2 2025-12-09T17:02:18,488 copying build/lib/multiqc/modules/hisat2/hisat2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hisat2 2025-12-09T17:02:18,491 creating build/bdist.linux-armv7l/wheel/multiqc/modules/cellranger 2025-12-09T17:02:18,492 copying build/lib/multiqc/modules/cellranger/cellranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2025-12-09T17:02:18,495 copying build/lib/multiqc/modules/cellranger/vdj.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2025-12-09T17:02:18,498 copying build/lib/multiqc/modules/cellranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2025-12-09T17:02:18,500 copying build/lib/multiqc/modules/cellranger/count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2025-12-09T17:02:18,503 copying build/lib/multiqc/modules/cellranger/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/cellranger 2025-12-09T17:02:18,505 creating build/bdist.linux-armv7l/wheel/multiqc/modules/verifybamid 2025-12-09T17:02:18,506 copying build/lib/multiqc/modules/verifybamid/verifybamid.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/verifybamid 2025-12-09T17:02:18,509 copying build/lib/multiqc/modules/verifybamid/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/verifybamid 2025-12-09T17:02:18,512 creating build/bdist.linux-armv7l/wheel/multiqc/modules/methylqa 2025-12-09T17:02:18,513 copying build/lib/multiqc/modules/methylqa/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methylqa 2025-12-09T17:02:18,515 copying build/lib/multiqc/modules/methylqa/methylqa.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/methylqa 2025-12-09T17:02:18,518 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rseqc 2025-12-09T17:02:18,519 copying build/lib/multiqc/modules/rseqc/rseqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,521 copying build/lib/multiqc/modules/rseqc/read_duplication.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,523 copying build/lib/multiqc/modules/rseqc/gene_body_coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,525 copying build/lib/multiqc/modules/rseqc/junction_saturation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,527 copying build/lib/multiqc/modules/rseqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,529 copying build/lib/multiqc/modules/rseqc/tin.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,531 copying build/lib/multiqc/modules/rseqc/read_distribution.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,533 copying build/lib/multiqc/modules/rseqc/infer_experiment.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,535 copying build/lib/multiqc/modules/rseqc/bam_stat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,537 copying build/lib/multiqc/modules/rseqc/inner_distance.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,539 copying build/lib/multiqc/modules/rseqc/read_gc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,541 copying build/lib/multiqc/modules/rseqc/junction_annotation.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rseqc 2025-12-09T17:02:18,544 creating build/bdist.linux-armv7l/wheel/multiqc/modules/afterqc 2025-12-09T17:02:18,545 copying build/lib/multiqc/modules/afterqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/afterqc 2025-12-09T17:02:18,547 copying build/lib/multiqc/modules/afterqc/afterqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/afterqc 2025-12-09T17:02:18,549 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prokka 2025-12-09T17:02:18,550 copying build/lib/multiqc/modules/prokka/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prokka 2025-12-09T17:02:18,553 copying build/lib/multiqc/modules/prokka/prokka.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prokka 2025-12-09T17:02:18,556 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kraken 2025-12-09T17:02:18,557 copying build/lib/multiqc/modules/kraken/kraken.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kraken 2025-12-09T17:02:18,561 copying build/lib/multiqc/modules/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kraken 2025-12-09T17:02:18,563 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools 2025-12-09T17:02:18,565 copying build/lib/multiqc/modules/umitools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools 2025-12-09T17:02:18,568 copying build/lib/multiqc/modules/umitools/umitools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools 2025-12-09T17:02:18,613 creating build/bdist.linux-armv7l/wheel/multiqc/modules/umitools/tests 2025-12-09T17:02:18,614 copying build/lib/multiqc/modules/umitools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools/tests 2025-12-09T17:02:18,616 copying build/lib/multiqc/modules/umitools/tests/test_umitools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/umitools/tests 2025-12-09T17:02:18,618 creating build/bdist.linux-armv7l/wheel/multiqc/modules/homer 2025-12-09T17:02:18,619 copying build/lib/multiqc/modules/homer/tagdirectory.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2025-12-09T17:02:18,622 copying build/lib/multiqc/modules/homer/findpeaks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2025-12-09T17:02:18,624 copying build/lib/multiqc/modules/homer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2025-12-09T17:02:18,841 copying build/lib/multiqc/modules/homer/homer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/homer 2025-12-09T17:02:18,843 copying build/lib/multiqc/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules 2025-12-09T17:02:18,845 creating build/bdist.linux-armv7l/wheel/multiqc/modules/eigenstratdatabasetools 2025-12-09T17:02:18,846 copying build/lib/multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/eigenstratdatabasetools 2025-12-09T17:02:18,848 copying build/lib/multiqc/modules/eigenstratdatabasetools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/eigenstratdatabasetools 2025-12-09T17:02:18,850 creating build/bdist.linux-armv7l/wheel/multiqc/modules/clusterflow 2025-12-09T17:02:18,851 copying build/lib/multiqc/modules/clusterflow/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clusterflow 2025-12-09T17:02:18,852 copying build/lib/multiqc/modules/clusterflow/clusterflow.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/clusterflow 2025-12-09T17:02:18,856 creating build/bdist.linux-armv7l/wheel/multiqc/modules/spaceranger 2025-12-09T17:02:18,857 copying build/lib/multiqc/modules/spaceranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2025-12-09T17:02:18,860 copying build/lib/multiqc/modules/spaceranger/count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2025-12-09T17:02:18,863 copying build/lib/multiqc/modules/spaceranger/spaceranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2025-12-09T17:02:18,865 copying build/lib/multiqc/modules/spaceranger/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/spaceranger 2025-12-09T17:02:18,868 creating build/bdist.linux-armv7l/wheel/multiqc/modules/whatshap 2025-12-09T17:02:18,869 copying build/lib/multiqc/modules/whatshap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/whatshap 2025-12-09T17:02:18,871 copying build/lib/multiqc/modules/whatshap/whatshap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/whatshap 2025-12-09T17:02:18,876 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samblaster 2025-12-09T17:02:18,877 copying build/lib/multiqc/modules/samblaster/samblaster.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samblaster 2025-12-09T17:02:18,879 copying build/lib/multiqc/modules/samblaster/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samblaster 2025-12-09T17:02:18,882 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dedup 2025-12-09T17:02:18,883 copying build/lib/multiqc/modules/dedup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dedup 2025-12-09T17:02:18,885 copying build/lib/multiqc/modules/dedup/dedup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dedup 2025-12-09T17:02:18,887 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcftools 2025-12-09T17:02:18,889 copying build/lib/multiqc/modules/bcftools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2025-12-09T17:02:18,891 copying build/lib/multiqc/modules/bcftools/bcftools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2025-12-09T17:02:18,894 copying build/lib/multiqc/modules/bcftools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcftools 2025-12-09T17:02:18,896 creating build/bdist.linux-armv7l/wheel/multiqc/modules/conpair 2025-12-09T17:02:18,897 copying build/lib/multiqc/modules/conpair/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/conpair 2025-12-09T17:02:18,899 copying build/lib/multiqc/modules/conpair/conpair.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/conpair 2025-12-09T17:02:18,902 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pbmarkdup 2025-12-09T17:02:18,903 copying build/lib/multiqc/modules/pbmarkdup/pbmarkdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pbmarkdup 2025-12-09T17:02:18,905 copying build/lib/multiqc/modules/pbmarkdup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pbmarkdup 2025-12-09T17:02:18,908 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qualimap 2025-12-09T17:02:18,908 copying build/lib/multiqc/modules/qualimap/QM_RNASeq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2025-12-09T17:02:18,911 copying build/lib/multiqc/modules/qualimap/QM_BamQC.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2025-12-09T17:02:18,914 copying build/lib/multiqc/modules/qualimap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2025-12-09T17:02:18,916 copying build/lib/multiqc/modules/qualimap/qualimap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qualimap 2025-12-09T17:02:18,918 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pangolin 2025-12-09T17:02:18,919 copying build/lib/multiqc/modules/pangolin/pangolin.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pangolin 2025-12-09T17:02:18,922 copying build/lib/multiqc/modules/pangolin/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pangolin 2025-12-09T17:02:18,924 creating build/bdist.linux-armv7l/wheel/multiqc/modules/malt 2025-12-09T17:02:18,925 copying build/lib/multiqc/modules/malt/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/malt 2025-12-09T17:02:18,927 copying build/lib/multiqc/modules/malt/malt.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/malt 2025-12-09T17:02:18,930 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hostile 2025-12-09T17:02:18,931 copying build/lib/multiqc/modules/hostile/hostile.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hostile 2025-12-09T17:02:18,933 copying build/lib/multiqc/modules/hostile/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hostile 2025-12-09T17:02:18,936 creating build/bdist.linux-armv7l/wheel/multiqc/modules/minionqc 2025-12-09T17:02:18,937 copying build/lib/multiqc/modules/minionqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/minionqc 2025-12-09T17:02:18,939 copying build/lib/multiqc/modules/minionqc/minionqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/minionqc 2025-12-09T17:02:18,942 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqyclean 2025-12-09T17:02:18,943 copying build/lib/multiqc/modules/seqyclean/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqyclean 2025-12-09T17:02:18,945 copying build/lib/multiqc/modules/seqyclean/seqyclean.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqyclean 2025-12-09T17:02:18,948 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fgbio 2025-12-09T17:02:18,949 copying build/lib/multiqc/modules/fgbio/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2025-12-09T17:02:18,951 copying build/lib/multiqc/modules/fgbio/fgbio.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2025-12-09T17:02:18,953 copying build/lib/multiqc/modules/fgbio/error_rate_by_read_position.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2025-12-09T17:02:18,955 copying build/lib/multiqc/modules/fgbio/group_reads_by_umi.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fgbio 2025-12-09T17:02:18,957 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,958 copying build/lib/multiqc/modules/dragen_fastqc/util.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,961 copying build/lib/multiqc/modules/dragen_fastqc/base_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,963 copying build/lib/multiqc/modules/dragen_fastqc/read_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,965 copying build/lib/multiqc/modules/dragen_fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,968 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets 2025-12-09T17:02:18,969 creating build/bdist.linux-armv7l/wheel/multiqc/modules/dragen_fastqc/assets/js 2025-12-09T17:02:18,970 copying build/lib/multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc/assets/js 2025-12-09T17:02:18,973 copying build/lib/multiqc/modules/dragen_fastqc/dragen_fastqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,975 copying build/lib/multiqc/modules/dragen_fastqc/content_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,978 copying build/lib/multiqc/modules/dragen_fastqc/gc_metrics.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/dragen_fastqc 2025-12-09T17:02:18,981 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rna_seqc 2025-12-09T17:02:18,982 copying build/lib/multiqc/modules/rna_seqc/rna_seqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rna_seqc 2025-12-09T17:02:18,984 copying build/lib/multiqc/modules/rna_seqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rna_seqc 2025-12-09T17:02:18,987 creating build/bdist.linux-armv7l/wheel/multiqc/modules/flash 2025-12-09T17:02:18,988 copying build/lib/multiqc/modules/flash/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flash 2025-12-09T17:02:18,990 copying build/lib/multiqc/modules/flash/flash.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/flash 2025-12-09T17:02:18,993 creating build/bdist.linux-armv7l/wheel/multiqc/modules/pairtools 2025-12-09T17:02:18,994 copying build/lib/multiqc/modules/pairtools/pairtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2025-12-09T17:02:18,997 copying build/lib/multiqc/modules/pairtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2025-12-09T17:02:18,999 copying build/lib/multiqc/modules/pairtools/params.yml -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2025-12-09T17:02:19,001 copying build/lib/multiqc/modules/pairtools/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/pairtools 2025-12-09T17:02:19,004 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snippy 2025-12-09T17:02:19,005 copying build/lib/multiqc/modules/snippy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snippy 2025-12-09T17:02:19,007 copying build/lib/multiqc/modules/snippy/snippy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snippy 2025-12-09T17:02:19,010 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mirtrace 2025-12-09T17:02:19,011 copying build/lib/multiqc/modules/mirtrace/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtrace 2025-12-09T17:02:19,013 copying build/lib/multiqc/modules/mirtrace/mirtrace.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mirtrace 2025-12-09T17:02:19,016 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsbits 2025-12-09T17:02:19,017 copying build/lib/multiqc/modules/ngsbits/readqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2025-12-09T17:02:19,019 copying build/lib/multiqc/modules/ngsbits/mappingqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2025-12-09T17:02:19,022 copying build/lib/multiqc/modules/ngsbits/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2025-12-09T17:02:19,024 copying build/lib/multiqc/modules/ngsbits/samplegender.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2025-12-09T17:02:19,026 copying build/lib/multiqc/modules/ngsbits/ngsbits.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2025-12-09T17:02:19,027 copying build/lib/multiqc/modules/ngsbits/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsbits 2025-12-09T17:02:19,030 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xengsort 2025-12-09T17:02:19,031 copying build/lib/multiqc/modules/xengsort/xengsort.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xengsort 2025-12-09T17:02:19,033 copying build/lib/multiqc/modules/xengsort/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xengsort 2025-12-09T17:02:19,036 creating build/bdist.linux-armv7l/wheel/multiqc/modules/longranger 2025-12-09T17:02:19,037 copying build/lib/multiqc/modules/longranger/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/longranger 2025-12-09T17:02:19,039 copying build/lib/multiqc/modules/longranger/longranger.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/longranger 2025-12-09T17:02:19,042 creating build/bdist.linux-armv7l/wheel/multiqc/modules/supernova 2025-12-09T17:02:19,043 copying build/lib/multiqc/modules/supernova/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/supernova 2025-12-09T17:02:19,045 copying build/lib/multiqc/modules/supernova/supernova.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/supernova 2025-12-09T17:02:19,048 creating build/bdist.linux-armv7l/wheel/multiqc/modules/glimpse 2025-12-09T17:02:19,049 copying build/lib/multiqc/modules/glimpse/err_spl.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2025-12-09T17:02:19,051 copying build/lib/multiqc/modules/glimpse/err_grp.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2025-12-09T17:02:19,054 copying build/lib/multiqc/modules/glimpse/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2025-12-09T17:02:19,056 copying build/lib/multiqc/modules/glimpse/glimpse.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/glimpse 2025-12-09T17:02:19,058 creating build/bdist.linux-armv7l/wheel/multiqc/modules/jellyfish 2025-12-09T17:02:19,059 copying build/lib/multiqc/modules/jellyfish/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jellyfish 2025-12-09T17:02:19,061 copying build/lib/multiqc/modules/jellyfish/jellyfish.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/jellyfish 2025-12-09T17:02:19,064 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ivar 2025-12-09T17:02:19,065 copying build/lib/multiqc/modules/ivar/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ivar 2025-12-09T17:02:19,067 copying build/lib/multiqc/modules/ivar/ivar.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ivar 2025-12-09T17:02:19,069 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicexplorer 2025-12-09T17:02:19,070 copying build/lib/multiqc/modules/hicexplorer/hicexplorer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicexplorer 2025-12-09T17:02:19,073 copying build/lib/multiqc/modules/hicexplorer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicexplorer 2025-12-09T17:02:19,075 creating build/bdist.linux-armv7l/wheel/multiqc/modules/happy 2025-12-09T17:02:19,076 copying build/lib/multiqc/modules/happy/happy.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/happy 2025-12-09T17:02:19,079 copying build/lib/multiqc/modules/happy/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/happy 2025-12-09T17:02:19,081 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosdepth 2025-12-09T17:02:19,082 copying build/lib/multiqc/modules/mosdepth/mosdepth.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth 2025-12-09T17:02:19,085 copying build/lib/multiqc/modules/mosdepth/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosdepth 2025-12-09T17:02:19,087 creating build/bdist.linux-armv7l/wheel/multiqc/modules/snpeff 2025-12-09T17:02:19,089 copying build/lib/multiqc/modules/snpeff/snpeff.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpeff 2025-12-09T17:02:19,091 copying build/lib/multiqc/modules/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/snpeff 2025-12-09T17:02:19,094 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bclconvert 2025-12-09T17:02:19,095 copying build/lib/multiqc/modules/bclconvert/bclconvert.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bclconvert 2025-12-09T17:02:19,098 copying build/lib/multiqc/modules/bclconvert/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bclconvert 2025-12-09T17:02:19,101 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qc3C 2025-12-09T17:02:19,102 copying build/lib/multiqc/modules/qc3C/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qc3C 2025-12-09T17:02:19,104 copying build/lib/multiqc/modules/qc3C/qc3C.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qc3C 2025-12-09T17:02:19,107 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanostat 2025-12-09T17:02:19,108 copying build/lib/multiqc/modules/nanostat/nanostat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanostat 2025-12-09T17:02:19,111 copying build/lib/multiqc/modules/nanostat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanostat 2025-12-09T17:02:19,114 creating build/bdist.linux-armv7l/wheel/multiqc/modules/disambiguate 2025-12-09T17:02:19,115 copying build/lib/multiqc/modules/disambiguate/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/disambiguate 2025-12-09T17:02:19,117 copying build/lib/multiqc/modules/disambiguate/disambiguate.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/disambiguate 2025-12-09T17:02:19,119 creating build/bdist.linux-armv7l/wheel/multiqc/modules/varscan2 2025-12-09T17:02:19,120 copying build/lib/multiqc/modules/varscan2/varscan2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/varscan2 2025-12-09T17:02:19,123 copying build/lib/multiqc/modules/varscan2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/varscan2 2025-12-09T17:02:19,125 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kallisto 2025-12-09T17:02:19,126 copying build/lib/multiqc/modules/kallisto/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kallisto 2025-12-09T17:02:19,128 copying build/lib/multiqc/modules/kallisto/kallisto.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kallisto 2025-12-09T17:02:19,130 creating build/bdist.linux-armv7l/wheel/multiqc/modules/busco 2025-12-09T17:02:19,132 copying build/lib/multiqc/modules/busco/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/busco 2025-12-09T17:02:19,134 copying build/lib/multiqc/modules/busco/busco.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/busco 2025-12-09T17:02:19,137 creating build/bdist.linux-armv7l/wheel/multiqc/modules/sequali 2025-12-09T17:02:19,138 copying build/lib/multiqc/modules/sequali/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sequali 2025-12-09T17:02:19,139 copying build/lib/multiqc/modules/sequali/sequali.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/sequali 2025-12-09T17:02:19,143 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gtdbtk 2025-12-09T17:02:19,144 copying build/lib/multiqc/modules/gtdbtk/gtdbtk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gtdbtk 2025-12-09T17:02:19,146 copying build/lib/multiqc/modules/gtdbtk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gtdbtk 2025-12-09T17:02:19,148 creating build/bdist.linux-armv7l/wheel/multiqc/modules/diamond 2025-12-09T17:02:19,149 copying build/lib/multiqc/modules/diamond/diamond.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/diamond 2025-12-09T17:02:19,151 copying build/lib/multiqc/modules/diamond/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/diamond 2025-12-09T17:02:19,154 creating build/bdist.linux-armv7l/wheel/multiqc/modules/prinseqplusplus 2025-12-09T17:02:19,155 copying build/lib/multiqc/modules/prinseqplusplus/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prinseqplusplus 2025-12-09T17:02:19,157 copying build/lib/multiqc/modules/prinseqplusplus/prinseqplusplus.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/prinseqplusplus 2025-12-09T17:02:19,160 creating build/bdist.linux-armv7l/wheel/multiqc/modules/haplocheck 2025-12-09T17:02:19,161 copying build/lib/multiqc/modules/haplocheck/haplocheck.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/haplocheck 2025-12-09T17:02:19,163 copying build/lib/multiqc/modules/haplocheck/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/haplocheck 2025-12-09T17:02:19,165 creating build/bdist.linux-armv7l/wheel/multiqc/modules/kat 2025-12-09T17:02:19,166 copying build/lib/multiqc/modules/kat/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kat 2025-12-09T17:02:19,168 copying build/lib/multiqc/modules/kat/kat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/kat 2025-12-09T17:02:19,172 creating build/bdist.linux-armv7l/wheel/multiqc/modules/porechop 2025-12-09T17:02:19,173 copying build/lib/multiqc/modules/porechop/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/porechop 2025-12-09T17:02:19,175 copying build/lib/multiqc/modules/porechop/porechop.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/porechop 2025-12-09T17:02:19,179 creating build/bdist.linux-armv7l/wheel/multiqc/modules/skewer 2025-12-09T17:02:19,180 copying build/lib/multiqc/modules/skewer/skewer.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/skewer 2025-12-09T17:02:19,184 copying build/lib/multiqc/modules/skewer/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/skewer 2025-12-09T17:02:19,187 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ngsderive 2025-12-09T17:02:19,189 copying build/lib/multiqc/modules/ngsderive/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsderive 2025-12-09T17:02:19,192 copying build/lib/multiqc/modules/ngsderive/ngsderive.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ngsderive 2025-12-09T17:02:19,197 creating build/bdist.linux-armv7l/wheel/multiqc/modules/librarian 2025-12-09T17:02:19,198 copying build/lib/multiqc/modules/librarian/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/librarian 2025-12-09T17:02:19,201 copying build/lib/multiqc/modules/librarian/librarian.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/librarian 2025-12-09T17:02:19,206 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bakta 2025-12-09T17:02:19,207 copying build/lib/multiqc/modules/bakta/bakta.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bakta 2025-12-09T17:02:19,211 copying build/lib/multiqc/modules/bakta/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bakta 2025-12-09T17:02:19,214 creating build/bdist.linux-armv7l/wheel/multiqc/modules/star 2025-12-09T17:02:19,216 copying build/lib/multiqc/modules/star/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/star 2025-12-09T17:02:19,219 copying build/lib/multiqc/modules/star/star.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/star 2025-12-09T17:02:19,224 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobambam2 2025-12-09T17:02:19,226 copying build/lib/multiqc/modules/biobambam2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobambam2 2025-12-09T17:02:19,229 copying build/lib/multiqc/modules/biobambam2/biobambam2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobambam2 2025-12-09T17:02:19,232 creating build/bdist.linux-armv7l/wheel/multiqc/modules/isoseq 2025-12-09T17:02:19,234 copying build/lib/multiqc/modules/isoseq/isoseq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/isoseq 2025-12-09T17:02:19,237 copying build/lib/multiqc/modules/isoseq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/isoseq 2025-12-09T17:02:19,241 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc 2025-12-09T17:02:19,243 copying build/lib/multiqc/modules/fastqc/fastqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc 2025-12-09T17:02:19,248 copying build/lib/multiqc/modules/fastqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc 2025-12-09T17:02:19,252 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:19,254 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:19,257 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:19,260 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:19,263 copying build/lib/multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/fastqc_theoretical_gc 2025-12-09T17:02:19,266 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets 2025-12-09T17:02:19,269 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/js 2025-12-09T17:02:19,271 copying build/lib/multiqc/modules/fastqc/assets/js/multiqc_fastqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/assets/js 2025-12-09T17:02:19,275 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastqc/assets/css 2025-12-09T17:02:19,276 copying build/lib/multiqc/modules/fastqc/assets/css/multiqc_fastqc.css -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastqc/assets/css 2025-12-09T17:02:19,279 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkm2 2025-12-09T17:02:19,280 copying build/lib/multiqc/modules/checkm2/checkm2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm2 2025-12-09T17:02:19,282 copying build/lib/multiqc/modules/checkm2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm2 2025-12-09T17:02:19,284 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqkit 2025-12-09T17:02:19,285 copying build/lib/multiqc/modules/seqkit/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2025-12-09T17:02:19,288 copying build/lib/multiqc/modules/seqkit/seqkit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2025-12-09T17:02:19,290 copying build/lib/multiqc/modules/seqkit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit 2025-12-09T17:02:19,292 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqkit/tests 2025-12-09T17:02:19,293 copying build/lib/multiqc/modules/seqkit/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit/tests 2025-12-09T17:02:19,295 copying build/lib/multiqc/modules/seqkit/tests/test_stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqkit/tests 2025-12-09T17:02:19,298 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools 2025-12-09T17:02:19,299 copying build/lib/multiqc/modules/samtools/idxstats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,301 copying build/lib/multiqc/modules/samtools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,304 copying build/lib/multiqc/modules/samtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,306 copying build/lib/multiqc/modules/samtools/rmdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,307 copying build/lib/multiqc/modules/samtools/flagstat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,310 copying build/lib/multiqc/modules/samtools/samtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,313 creating build/bdist.linux-armv7l/wheel/multiqc/modules/samtools/tests 2025-12-09T17:02:19,314 copying build/lib/multiqc/modules/samtools/tests/test_flagstat.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2025-12-09T17:02:19,316 copying build/lib/multiqc/modules/samtools/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2025-12-09T17:02:19,317 copying build/lib/multiqc/modules/samtools/tests/test_coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools/tests 2025-12-09T17:02:19,319 copying build/lib/multiqc/modules/samtools/markdup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,322 copying build/lib/multiqc/modules/samtools/coverage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,324 copying build/lib/multiqc/modules/samtools/ampliconclip.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/samtools 2025-12-09T17:02:19,327 creating build/bdist.linux-armv7l/wheel/multiqc/modules/xenium 2025-12-09T17:02:19,327 copying build/lib/multiqc/modules/xenium/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenium 2025-12-09T17:02:19,329 copying build/lib/multiqc/modules/xenium/xenium.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/xenium 2025-12-09T17:02:19,332 creating build/bdist.linux-armv7l/wheel/multiqc/modules/qorts 2025-12-09T17:02:19,333 copying build/lib/multiqc/modules/qorts/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qorts 2025-12-09T17:02:19,335 copying build/lib/multiqc/modules/qorts/qorts.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/qorts 2025-12-09T17:02:19,338 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vcftools 2025-12-09T17:02:19,339 copying build/lib/multiqc/modules/vcftools/tstv_summary.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2025-12-09T17:02:19,341 copying build/lib/multiqc/modules/vcftools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2025-12-09T17:02:19,342 copying build/lib/multiqc/modules/vcftools/vcftools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2025-12-09T17:02:19,344 copying build/lib/multiqc/modules/vcftools/relatedness2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2025-12-09T17:02:19,346 copying build/lib/multiqc/modules/vcftools/tstv_by_count.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2025-12-09T17:02:19,348 copying build/lib/multiqc/modules/vcftools/tstv_by_qual.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vcftools 2025-12-09T17:02:19,350 creating build/bdist.linux-armv7l/wheel/multiqc/modules/somalier 2025-12-09T17:02:19,351 copying build/lib/multiqc/modules/somalier/somalier.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/somalier 2025-12-09T17:02:19,354 copying build/lib/multiqc/modules/somalier/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/somalier 2025-12-09T17:02:19,356 creating build/bdist.linux-armv7l/wheel/multiqc/modules/seqera_cli 2025-12-09T17:02:19,357 copying build/lib/multiqc/modules/seqera_cli/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqera_cli 2025-12-09T17:02:19,359 copying build/lib/multiqc/modules/seqera_cli/seqera_cli.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/seqera_cli 2025-12-09T17:02:19,362 creating build/bdist.linux-armv7l/wheel/multiqc/modules/stacks 2025-12-09T17:02:19,363 copying build/lib/multiqc/modules/stacks/stacks.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/stacks 2025-12-09T17:02:19,366 copying build/lib/multiqc/modules/stacks/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/stacks 2025-12-09T17:02:19,368 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamtools 2025-12-09T17:02:19,369 copying build/lib/multiqc/modules/bamtools/stats.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2025-12-09T17:02:19,372 copying build/lib/multiqc/modules/bamtools/bamtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2025-12-09T17:02:19,373 copying build/lib/multiqc/modules/bamtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamtools 2025-12-09T17:02:19,376 creating build/bdist.linux-armv7l/wheel/multiqc/modules/freyja 2025-12-09T17:02:19,377 copying build/lib/multiqc/modules/freyja/freyja.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/freyja 2025-12-09T17:02:19,379 copying build/lib/multiqc/modules/freyja/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/freyja 2025-12-09T17:02:19,381 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bowtie2 2025-12-09T17:02:19,382 copying build/lib/multiqc/modules/bowtie2/bowtie2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie2 2025-12-09T17:02:19,385 copying build/lib/multiqc/modules/bowtie2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bowtie2 2025-12-09T17:02:19,387 creating build/bdist.linux-armv7l/wheel/multiqc/modules/megahit 2025-12-09T17:02:19,388 copying build/lib/multiqc/modules/megahit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/megahit 2025-12-09T17:02:19,390 copying build/lib/multiqc/modules/megahit/megahit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/megahit 2025-12-09T17:02:19,393 creating build/bdist.linux-armv7l/wheel/multiqc/modules/purple 2025-12-09T17:02:19,394 copying build/lib/multiqc/modules/purple/purple.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/purple 2025-12-09T17:02:19,396 copying build/lib/multiqc/modules/purple/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/purple 2025-12-09T17:02:19,398 creating build/bdist.linux-armv7l/wheel/multiqc/modules/macs2 2025-12-09T17:02:19,399 copying build/lib/multiqc/modules/macs2/macs2.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/macs2 2025-12-09T17:02:19,401 copying build/lib/multiqc/modules/macs2/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/macs2 2025-12-09T17:02:19,404 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hicup 2025-12-09T17:02:19,405 copying build/lib/multiqc/modules/hicup/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicup 2025-12-09T17:02:19,406 copying build/lib/multiqc/modules/hicup/hicup.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hicup 2025-12-09T17:02:19,409 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bbmap 2025-12-09T17:02:19,410 copying build/lib/multiqc/modules/bbmap/plot_mhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,412 copying build/lib/multiqc/modules/bbmap/plot_ihist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,414 copying build/lib/multiqc/modules/bbmap/plot_basic_hist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,416 copying build/lib/multiqc/modules/bbmap/bbmap_filetypes.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,418 copying build/lib/multiqc/modules/bbmap/plot_qchist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,420 copying build/lib/multiqc/modules/bbmap/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,421 copying build/lib/multiqc/modules/bbmap/plot_indelhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,423 copying build/lib/multiqc/modules/bbmap/plot_bbsplit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,426 copying build/lib/multiqc/modules/bbmap/plot_aqhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,428 copying build/lib/multiqc/modules/bbmap/plot_qahist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,430 copying build/lib/multiqc/modules/bbmap/plot_bhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,432 copying build/lib/multiqc/modules/bbmap/plot_qhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,434 copying build/lib/multiqc/modules/bbmap/plot_covhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,435 copying build/lib/multiqc/modules/bbmap/plot_idhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,437 copying build/lib/multiqc/modules/bbmap/bbmap.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,440 copying build/lib/multiqc/modules/bbmap/plot_bqhist.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bbmap 2025-12-09T17:02:19,442 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mapdamage 2025-12-09T17:02:19,443 copying build/lib/multiqc/modules/mapdamage/mapdamage.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mapdamage 2025-12-09T17:02:19,446 copying build/lib/multiqc/modules/mapdamage/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mapdamage 2025-12-09T17:02:19,448 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs 2025-12-09T17:02:19,449 copying build/lib/multiqc/modules/ccs/ccs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs 2025-12-09T17:02:19,451 copying build/lib/multiqc/modules/ccs/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs 2025-12-09T17:02:19,453 creating build/bdist.linux-armv7l/wheel/multiqc/modules/ccs/tests 2025-12-09T17:02:19,454 copying build/lib/multiqc/modules/ccs/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs/tests 2025-12-09T17:02:19,456 copying build/lib/multiqc/modules/ccs/tests/test_ccs.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/ccs/tests 2025-12-09T17:02:19,458 creating build/bdist.linux-armv7l/wheel/multiqc/modules/damageprofiler 2025-12-09T17:02:19,459 copying build/lib/multiqc/modules/damageprofiler/damageprofiler.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/damageprofiler 2025-12-09T17:02:19,461 copying build/lib/multiqc/modules/damageprofiler/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/damageprofiler 2025-12-09T17:02:19,463 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biobloomtools 2025-12-09T17:02:19,465 copying build/lib/multiqc/modules/biobloomtools/biobloomtools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobloomtools 2025-12-09T17:02:19,467 copying build/lib/multiqc/modules/biobloomtools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biobloomtools 2025-12-09T17:02:19,469 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkm 2025-12-09T17:02:19,470 copying build/lib/multiqc/modules/checkm/checkm.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm 2025-12-09T17:02:19,473 copying build/lib/multiqc/modules/checkm/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkm 2025-12-09T17:02:19,475 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit 2025-12-09T17:02:19,476 copying build/lib/multiqc/modules/biscuit/biscuit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit 2025-12-09T17:02:19,479 copying build/lib/multiqc/modules/biscuit/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit 2025-12-09T17:02:19,481 creating build/bdist.linux-armv7l/wheel/multiqc/modules/biscuit/tests 2025-12-09T17:02:19,482 copying build/lib/multiqc/modules/biscuit/tests/test_biscuit.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit/tests 2025-12-09T17:02:19,484 copying build/lib/multiqc/modules/biscuit/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/biscuit/tests 2025-12-09T17:02:19,486 creating build/bdist.linux-armv7l/wheel/multiqc/modules/hifiasm 2025-12-09T17:02:19,487 copying build/lib/multiqc/modules/hifiasm/hifiasm.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifiasm 2025-12-09T17:02:19,489 copying build/lib/multiqc/modules/hifiasm/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/hifiasm 2025-12-09T17:02:19,492 creating build/bdist.linux-armv7l/wheel/multiqc/modules/nanoq 2025-12-09T17:02:19,493 copying build/lib/multiqc/modules/nanoq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanoq 2025-12-09T17:02:19,495 copying build/lib/multiqc/modules/nanoq/nanoq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/nanoq 2025-12-09T17:02:19,497 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bcl2fastq 2025-12-09T17:02:19,498 copying build/lib/multiqc/modules/bcl2fastq/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcl2fastq 2025-12-09T17:02:19,500 copying build/lib/multiqc/modules/bcl2fastq/bcl2fastq.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bcl2fastq 2025-12-09T17:02:19,503 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bustools 2025-12-09T17:02:19,504 copying build/lib/multiqc/modules/bustools/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bustools 2025-12-09T17:02:19,506 copying build/lib/multiqc/modules/bustools/bustools.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bustools 2025-12-09T17:02:19,509 creating build/bdist.linux-armv7l/wheel/multiqc/modules/bamdst 2025-12-09T17:02:19,510 copying build/lib/multiqc/modules/bamdst/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamdst 2025-12-09T17:02:19,512 copying build/lib/multiqc/modules/bamdst/bamdst.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/bamdst 2025-12-09T17:02:19,515 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gatk 2025-12-09T17:02:19,516 copying build/lib/multiqc/modules/gatk/analyze_saturation_mutagenesis.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2025-12-09T17:02:19,518 copying build/lib/multiqc/modules/gatk/base_recalibrator.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2025-12-09T17:02:19,521 copying build/lib/multiqc/modules/gatk/gatk.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2025-12-09T17:02:19,522 copying build/lib/multiqc/modules/gatk/varianteval.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2025-12-09T17:02:19,524 copying build/lib/multiqc/modules/gatk/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2025-12-09T17:02:19,526 copying build/lib/multiqc/modules/gatk/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gatk 2025-12-09T17:02:19,528 creating build/bdist.linux-armv7l/wheel/multiqc/modules/checkqc 2025-12-09T17:02:19,529 copying build/lib/multiqc/modules/checkqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkqc 2025-12-09T17:02:19,531 copying build/lib/multiqc/modules/checkqc/checkqc.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/checkqc 2025-12-09T17:02:19,534 creating build/bdist.linux-armv7l/wheel/multiqc/modules/vep 2025-12-09T17:02:19,535 copying build/lib/multiqc/modules/vep/vep.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vep 2025-12-09T17:02:19,538 copying build/lib/multiqc/modules/vep/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/vep 2025-12-09T17:02:19,540 creating build/bdist.linux-armv7l/wheel/multiqc/modules/rockhopper 2025-12-09T17:02:19,541 copying build/lib/multiqc/modules/rockhopper/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rockhopper 2025-12-09T17:02:19,543 copying build/lib/multiqc/modules/rockhopper/rockhopper.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/rockhopper 2025-12-09T17:02:19,546 creating build/bdist.linux-armv7l/wheel/multiqc/modules/fastq_screen 2025-12-09T17:02:19,547 copying build/lib/multiqc/modules/fastq_screen/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastq_screen 2025-12-09T17:02:19,549 copying build/lib/multiqc/modules/fastq_screen/fastq_screen.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/fastq_screen 2025-12-09T17:02:19,552 creating build/bdist.linux-armv7l/wheel/multiqc/modules/mosaicatcher 2025-12-09T17:02:19,552 copying build/lib/multiqc/modules/mosaicatcher/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosaicatcher 2025-12-09T17:02:19,554 copying build/lib/multiqc/modules/mosaicatcher/mosaicatcher.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/mosaicatcher 2025-12-09T17:02:19,557 creating build/bdist.linux-armv7l/wheel/multiqc/modules/gffcompare 2025-12-09T17:02:19,558 copying build/lib/multiqc/modules/gffcompare/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gffcompare 2025-12-09T17:02:19,560 copying build/lib/multiqc/modules/gffcompare/gffcompare.py -> build/bdist.linux-armv7l/wheel/./multiqc/modules/gffcompare 2025-12-09T17:02:19,562 copying build/lib/multiqc/config.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:19,565 copying build/lib/multiqc/multiqc.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:19,567 copying build/lib/multiqc/validation.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:19,570 copying build/lib/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:19,572 copying build/lib/multiqc/search_patterns.yaml -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:19,574 copying build/lib/multiqc/py.typed -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:19,576 creating build/bdist.linux-armv7l/wheel/multiqc/templates 2025-12-09T17:02:19,578 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original 2025-12-09T17:02:19,580 copying build/lib/multiqc/templates/original/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:19,582 copying build/lib/multiqc/templates/original/general_stats.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:19,584 copying build/lib/multiqc/templates/original/head.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:19,586 copying build/lib/multiqc/templates/original/base.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:19,588 copying build/lib/multiqc/templates/original/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:19,590 copying build/lib/multiqc/templates/original/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:19,593 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets 2025-12-09T17:02:19,596 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js 2025-12-09T17:02:19,597 copying build/lib/multiqc/templates/original/assets/js/decompress.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,599 copying build/lib/multiqc/templates/original/assets/js/multiqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,602 copying build/lib/multiqc/templates/original/assets/js/tables.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,605 copying build/lib/multiqc/templates/original/assets/js/ai-helpers.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,608 copying build/lib/multiqc/templates/original/assets/js/flat.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,610 copying build/lib/multiqc/templates/original/assets/js/plotting.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,613 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,615 copying build/lib/multiqc/templates/original/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,619 copying build/lib/multiqc/templates/original/assets/js/packages/showdown.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,623 copying build/lib/multiqc/templates/original/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,625 copying build/lib/multiqc/templates/original/assets/js/packages/plotly-2.27.0.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,867 copying build/lib/multiqc/templates/original/assets/js/packages/plotly-2.27.0.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,923 copying build/lib/multiqc/templates/original/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,926 copying build/lib/multiqc/templates/original/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,929 copying build/lib/multiqc/templates/original/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,933 copying build/lib/multiqc/templates/original/assets/js/packages/jquery.toast.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,935 copying build/lib/multiqc/templates/original/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,939 copying build/lib/multiqc/templates/original/assets/js/packages/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/packages 2025-12-09T17:02:19,942 copying build/lib/multiqc/templates/original/assets/js/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,945 copying build/lib/multiqc/templates/original/assets/js/toolbox.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,948 copying build/lib/multiqc/templates/original/assets/js/render.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js 2025-12-09T17:02:19,951 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/js/plots 2025-12-09T17:02:19,952 copying build/lib/multiqc/templates/original/assets/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2025-12-09T17:02:19,954 copying build/lib/multiqc/templates/original/assets/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2025-12-09T17:02:19,956 copying build/lib/multiqc/templates/original/assets/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2025-12-09T17:02:19,959 copying build/lib/multiqc/templates/original/assets/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2025-12-09T17:02:19,961 copying build/lib/multiqc/templates/original/assets/js/plots/line.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2025-12-09T17:02:19,963 copying build/lib/multiqc/templates/original/assets/js/plots/box.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/js/plots 2025-12-09T17:02:19,966 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/css 2025-12-09T17:02:19,967 copying build/lib/multiqc/templates/original/assets/css/jquery.toast.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2025-12-09T17:02:19,970 copying build/lib/multiqc/templates/original/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2025-12-09T17:02:19,974 copying build/lib/multiqc/templates/original/assets/css/default_multiqc.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/css 2025-12-09T17:02:19,977 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/fonts 2025-12-09T17:02:19,978 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.eot -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2025-12-09T17:02:19,981 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2025-12-09T17:02:19,985 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.woff2 -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2025-12-09T17:02:19,988 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2025-12-09T17:02:19,994 copying build/lib/multiqc/templates/original/assets/fonts/glyphicons-halflings-regular.ttf -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/fonts 2025-12-09T17:02:19,999 creating build/bdist.linux-armv7l/wheel/multiqc/templates/original/assets/img 2025-12-09T17:02:20,000 copying build/lib/multiqc/templates/original/assets/img/MultiQC_logo_dark.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2025-12-09T17:02:20,004 copying build/lib/multiqc/templates/original/assets/img/MultiQC_logo.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2025-12-09T17:02:20,007 copying build/lib/multiqc/templates/original/assets/img/seqera_logo_mono.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2025-12-09T17:02:20,010 copying build/lib/multiqc/templates/original/assets/img/favicon-16x16.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2025-12-09T17:02:20,013 copying build/lib/multiqc/templates/original/assets/img/favicon-96x96.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2025-12-09T17:02:20,016 copying build/lib/multiqc/templates/original/assets/img/favicon-32x32.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2025-12-09T17:02:20,018 copying build/lib/multiqc/templates/original/assets/img/seqera_logo.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original/assets/img 2025-12-09T17:02:20,022 copying build/lib/multiqc/templates/original/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:20,025 copying build/lib/multiqc/templates/original/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:20,028 copying build/lib/multiqc/templates/original/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:20,031 copying build/lib/multiqc/templates/original/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:20,033 copying build/lib/multiqc/templates/original/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/original 2025-12-09T17:02:20,037 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default 2025-12-09T17:02:20,039 copying build/lib/multiqc/templates/default/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,041 copying build/lib/multiqc/templates/default/CLAUDE.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,044 copying build/lib/multiqc/templates/default/general_stats.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,047 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled 2025-12-09T17:02:20,050 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled/js 2025-12-09T17:02:20,052 copying build/lib/multiqc/templates/default/compiled/js/multiqc.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/compiled/js 2025-12-09T17:02:20,060 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/compiled/css 2025-12-09T17:02:20,062 copying build/lib/multiqc/templates/default/compiled/css/multiqc.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/compiled/css 2025-12-09T17:02:20,071 copying build/lib/multiqc/templates/default/head.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,073 copying build/lib/multiqc/templates/default/base.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,076 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/toolbox 2025-12-09T17:02:20,077 copying build/lib/multiqc/templates/default/toolbox/rename.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,080 copying build/lib/multiqc/templates/default/toolbox/about.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,083 copying build/lib/multiqc/templates/default/toolbox/save.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,085 copying build/lib/multiqc/templates/default/toolbox/hide.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,087 copying build/lib/multiqc/templates/default/toolbox/ai.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,089 copying build/lib/multiqc/templates/default/toolbox/highlight.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,092 copying build/lib/multiqc/templates/default/toolbox/buttons.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,094 copying build/lib/multiqc/templates/default/toolbox/export.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,097 copying build/lib/multiqc/templates/default/toolbox/citations.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/toolbox 2025-12-09T17:02:20,099 copying build/lib/multiqc/templates/default/README.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,102 copying build/lib/multiqc/templates/default/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,104 copying build/lib/multiqc/templates/default/package.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,106 copying build/lib/multiqc/templates/default/package-lock.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,110 copying build/lib/multiqc/templates/default/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,114 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets 2025-12-09T17:02:20,115 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js 2025-12-09T17:02:20,117 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,119 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,124 copying build/lib/multiqc/templates/default/assets/js/packages/showdown.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,129 copying build/lib/multiqc/templates/default/assets/js/packages/FileSaver.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,131 copying build/lib/multiqc/templates/default/assets/js/packages/plotly-3.1.2.custom.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,159 copying build/lib/multiqc/templates/default/assets/js/packages/pako_inflate.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,162 copying build/lib/multiqc/templates/default/assets/js/packages/jquery.tablesorter.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,166 copying build/lib/multiqc/templates/default/assets/js/packages/jquery-ui.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,169 copying build/lib/multiqc/templates/default/assets/js/packages/jszip.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/js/packages 2025-12-09T17:02:20,174 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/assets/img 2025-12-09T17:02:20,176 copying build/lib/multiqc/templates/default/assets/img/MultiQC_icon.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2025-12-09T17:02:20,178 copying build/lib/multiqc/templates/default/assets/img/Anthropic_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2025-12-09T17:02:20,180 copying build/lib/multiqc/templates/default/assets/img/MultiQC_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2025-12-09T17:02:20,183 copying build/lib/multiqc/templates/default/assets/img/Seqera_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2025-12-09T17:02:20,185 copying build/lib/multiqc/templates/default/assets/img/OpenAI_logo.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2025-12-09T17:02:20,187 copying build/lib/multiqc/templates/default/assets/img/Seqera_AI_icon.svg -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/assets/img 2025-12-09T17:02:20,191 copying build/lib/multiqc/templates/default/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,193 copying build/lib/multiqc/templates/default/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,195 copying build/lib/multiqc/templates/default/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,198 copying build/lib/multiqc/templates/default/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,201 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src 2025-12-09T17:02:20,202 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js 2025-12-09T17:02:20,204 copying build/lib/multiqc/templates/default/src/js/decompress.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,206 copying build/lib/multiqc/templates/default/src/js/multiqc.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,208 copying build/lib/multiqc/templates/default/src/js/tables.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,211 copying build/lib/multiqc/templates/default/src/js/ai-helpers.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,214 copying build/lib/multiqc/templates/default/src/js/flat.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,216 copying build/lib/multiqc/templates/default/src/js/plotting.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,219 copying build/lib/multiqc/templates/default/src/js/color-mode.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,221 copying build/lib/multiqc/templates/default/src/js/main.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,223 copying build/lib/multiqc/templates/default/src/js/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,227 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,228 copying build/lib/multiqc/templates/default/src/js/toolbox/highlights.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,230 copying build/lib/multiqc/templates/default/src/js/toolbox/export.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,233 copying build/lib/multiqc/templates/default/src/js/toolbox/ai.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,237 copying build/lib/multiqc/templates/default/src/js/toolbox/utils.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,239 copying build/lib/multiqc/templates/default/src/js/toolbox/constants.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,241 copying build/lib/multiqc/templates/default/src/js/toolbox/hide.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,244 copying build/lib/multiqc/templates/default/src/js/toolbox/save-load.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,247 copying build/lib/multiqc/templates/default/src/js/toolbox/citations.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,249 copying build/lib/multiqc/templates/default/src/js/toolbox/filters.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,251 copying build/lib/multiqc/templates/default/src/js/toolbox/rename.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,254 copying build/lib/multiqc/templates/default/src/js/toolbox/help.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/toolbox 2025-12-09T17:02:20,256 copying build/lib/multiqc/templates/default/src/js/doi.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,258 copying build/lib/multiqc/templates/default/src/js/main-js.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,261 copying build/lib/multiqc/templates/default/src/js/toolbox.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,263 copying build/lib/multiqc/templates/default/src/js/render.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,265 copying build/lib/multiqc/templates/default/src/js/statuses.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js 2025-12-09T17:02:20,268 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/js/plots 2025-12-09T17:02:20,270 copying build/lib/multiqc/templates/default/src/js/plots/bar.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2025-12-09T17:02:20,273 copying build/lib/multiqc/templates/default/src/js/plots/heatmap.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2025-12-09T17:02:20,275 copying build/lib/multiqc/templates/default/src/js/plots/violin.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2025-12-09T17:02:20,278 copying build/lib/multiqc/templates/default/src/js/plots/scatter.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2025-12-09T17:02:20,281 copying build/lib/multiqc/templates/default/src/js/plots/line.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2025-12-09T17:02:20,283 copying build/lib/multiqc/templates/default/src/js/plots/box.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/js/plots 2025-12-09T17:02:20,287 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss 2025-12-09T17:02:20,288 copying build/lib/multiqc/templates/default/src/scss/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2025-12-09T17:02:20,290 copying build/lib/multiqc/templates/default/src/scss/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2025-12-09T17:02:20,293 copying build/lib/multiqc/templates/default/src/scss/_variables.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2025-12-09T17:02:20,295 copying build/lib/multiqc/templates/default/src/scss/main.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss 2025-12-09T17:02:20,298 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss/themes 2025-12-09T17:02:20,299 creating build/bdist.linux-armv7l/wheel/multiqc/templates/default/src/scss/themes/dark 2025-12-09T17:02:20,301 copying build/lib/multiqc/templates/default/src/scss/themes/dark/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss/themes/dark 2025-12-09T17:02:20,303 copying build/lib/multiqc/templates/default/src/scss/themes/dark/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default/src/scss/themes/dark 2025-12-09T17:02:20,306 copying build/lib/multiqc/templates/default/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,308 copying build/lib/multiqc/templates/default/vite.config.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,311 copying build/lib/multiqc/templates/default/theme_toggle.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/default 2025-12-09T17:02:20,313 copying build/lib/multiqc/templates/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates 2025-12-09T17:02:20,315 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo 2025-12-09T17:02:20,316 copying build/lib/multiqc/templates/geo/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo 2025-12-09T17:02:20,319 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets 2025-12-09T17:02:20,320 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/css 2025-12-09T17:02:20,322 copying build/lib/multiqc/templates/geo/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/css 2025-12-09T17:02:20,327 creating build/bdist.linux-armv7l/wheel/multiqc/templates/geo/assets/img 2025-12-09T17:02:20,328 copying build/lib/multiqc/templates/geo/assets/img/hot.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,331 copying build/lib/multiqc/templates/geo/assets/img/microfab.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,334 copying build/lib/multiqc/templates/geo/assets/img/stars.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,336 copying build/lib/multiqc/templates/geo/assets/img/new2.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,338 copying build/lib/multiqc/templates/geo/assets/img/new.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,340 copying build/lib/multiqc/templates/geo/assets/img/rainbow.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,343 copying build/lib/multiqc/templates/geo/assets/img/flames.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,346 copying build/lib/multiqc/templates/geo/assets/img/emailme.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,348 copying build/lib/multiqc/templates/geo/assets/img/progress.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,350 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,353 copying build/lib/multiqc/templates/geo/assets/img/mchammer.gif -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,357 copying build/lib/multiqc/templates/geo/assets/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/./multiqc/templates/geo/assets/img 2025-12-09T17:02:20,360 creating build/bdist.linux-armv7l/wheel/multiqc/templates/sections 2025-12-09T17:02:20,361 copying build/lib/multiqc/templates/sections/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/sections 2025-12-09T17:02:20,364 copying build/lib/multiqc/templates/sections/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/sections 2025-12-09T17:02:20,366 creating build/bdist.linux-armv7l/wheel/multiqc/templates/gathered 2025-12-09T17:02:20,368 copying build/lib/multiqc/templates/gathered/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2025-12-09T17:02:20,370 copying build/lib/multiqc/templates/gathered/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2025-12-09T17:02:20,372 copying build/lib/multiqc/templates/gathered/content.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/gathered 2025-12-09T17:02:20,375 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco 2025-12-09T17:02:20,376 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled 2025-12-09T17:02:20,378 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled/js 2025-12-09T17:02:20,380 copying build/lib/multiqc/templates/disco/compiled/js/multiqc.min.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/compiled/js 2025-12-09T17:02:20,386 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/compiled/css 2025-12-09T17:02:20,387 copying build/lib/multiqc/templates/disco/compiled/css/multiqc.min.css -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/compiled/css 2025-12-09T17:02:20,395 copying build/lib/multiqc/templates/disco/README.md -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2025-12-09T17:02:20,397 copying build/lib/multiqc/templates/disco/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2025-12-09T17:02:20,399 copying build/lib/multiqc/templates/disco/package.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2025-12-09T17:02:20,401 copying build/lib/multiqc/templates/disco/package-lock.json -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2025-12-09T17:02:20,405 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src 2025-12-09T17:02:20,407 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src/js 2025-12-09T17:02:20,408 copying build/lib/multiqc/templates/disco/src/js/main.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/js 2025-12-09T17:02:20,411 creating build/bdist.linux-armv7l/wheel/multiqc/templates/disco/src/scss 2025-12-09T17:02:20,412 copying build/lib/multiqc/templates/disco/src/scss/_colors.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2025-12-09T17:02:20,415 copying build/lib/multiqc/templates/disco/src/scss/custom.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2025-12-09T17:02:20,417 copying build/lib/multiqc/templates/disco/src/scss/main.scss -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco/src/scss 2025-12-09T17:02:20,424 copying build/lib/multiqc/templates/disco/vite.config.js -> build/bdist.linux-armv7l/wheel/./multiqc/templates/disco 2025-12-09T17:02:20,426 creating build/bdist.linux-armv7l/wheel/multiqc/templates/simple 2025-12-09T17:02:20,428 copying build/lib/multiqc/templates/simple/footer.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2025-12-09T17:02:20,430 copying build/lib/multiqc/templates/simple/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2025-12-09T17:02:20,432 copying build/lib/multiqc/templates/simple/foot.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2025-12-09T17:02:20,434 copying build/lib/multiqc/templates/simple/toolbox.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2025-12-09T17:02:20,436 copying build/lib/multiqc/templates/simple/includes.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2025-12-09T17:02:20,439 copying build/lib/multiqc/templates/simple/header.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2025-12-09T17:02:20,441 copying build/lib/multiqc/templates/simple/nav.html -> build/bdist.linux-armv7l/wheel/./multiqc/templates/simple 2025-12-09T17:02:20,443 copying build/lib/multiqc/__main__.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:20,445 copying build/lib/multiqc/report.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:20,449 creating build/bdist.linux-armv7l/wheel/multiqc/core 2025-12-09T17:02:20,450 copying build/lib/multiqc/core/tmp_dir.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,453 copying build/lib/multiqc/core/strict_helpers.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,455 copying build/lib/multiqc/core/log_and_rich.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,458 copying build/lib/multiqc/core/update_config.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,460 copying build/lib/multiqc/core/plot_data_store.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,463 creating build/bdist.linux-armv7l/wheel/multiqc/core/special_case_modules 2025-12-09T17:02:20,465 copying build/lib/multiqc/core/special_case_modules/load_multiqc_data.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2025-12-09T17:02:20,468 copying build/lib/multiqc/core/special_case_modules/profile_runtime.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2025-12-09T17:02:20,471 copying build/lib/multiqc/core/special_case_modules/custom_content.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2025-12-09T17:02:20,473 copying build/lib/multiqc/core/special_case_modules/software_versions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core/special_case_modules 2025-12-09T17:02:20,475 copying build/lib/multiqc/core/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,477 copying build/lib/multiqc/core/software_versions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,479 copying build/lib/multiqc/core/exceptions.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,481 copying build/lib/multiqc/core/file_search.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,484 copying build/lib/multiqc/core/write_results.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,487 copying build/lib/multiqc/core/plugin_hooks.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,489 copying build/lib/multiqc/core/exec_modules.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,491 copying build/lib/multiqc/core/ai.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,494 copying build/lib/multiqc/core/config_check.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,496 copying build/lib/multiqc/core/version_check.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,498 copying build/lib/multiqc/core/order_modules_and_sections.py -> build/bdist.linux-armv7l/wheel/./multiqc/core 2025-12-09T17:02:20,501 copying build/lib/multiqc/base_module.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:20,504 copying build/lib/multiqc/interactive.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:20,507 creating build/bdist.linux-armv7l/wheel/multiqc/plots 2025-12-09T17:02:20,508 copying build/lib/multiqc/plots/bargraph.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,511 copying build/lib/multiqc/plots/heatmap.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,514 copying build/lib/multiqc/plots/scatter.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,516 copying build/lib/multiqc/plots/__init__.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,518 copying build/lib/multiqc/plots/table.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,520 copying build/lib/multiqc/plots/table_object.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,523 copying build/lib/multiqc/plots/plot.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,527 copying build/lib/multiqc/plots/utils.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,529 copying build/lib/multiqc/plots/violin.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,533 copying build/lib/multiqc/plots/box.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,535 copying build/lib/multiqc/plots/linegraph.py -> build/bdist.linux-armv7l/wheel/./multiqc/plots 2025-12-09T17:02:20,539 copying build/lib/multiqc/types.py -> build/bdist.linux-armv7l/wheel/./multiqc 2025-12-09T17:02:20,541 running install_egg_info 2025-12-09T17:02:20,546 Copying multiqc.egg-info to build/bdist.linux-armv7l/wheel/./multiqc-1.33-py3.11.egg-info 2025-12-09T17:02:20,561 running install_scripts 2025-12-09T17:02:20,577 creating build/bdist.linux-armv7l/wheel/multiqc-1.33.dist-info/WHEEL 2025-12-09T17:02:20,581 creating '/tmp/pip-wheel-3qgwoad5/.tmp-crbidt0c/multiqc-1.33-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-09T17:02:20,586 adding 'multiqc/__init__.py' 2025-12-09T17:02:20,587 adding 'multiqc/__main__.py' 2025-12-09T17:02:20,594 adding 'multiqc/base_module.py' 2025-12-09T17:02:20,598 adding 'multiqc/config.py' 2025-12-09T17:02:20,600 adding 'multiqc/config_defaults.yaml' 2025-12-09T17:02:20,603 adding 'multiqc/interactive.py' 2025-12-09T17:02:20,606 adding 'multiqc/multiqc.py' 2025-12-09T17:02:20,608 adding 'multiqc/py.typed' 2025-12-09T17:02:20,614 adding 'multiqc/report.py' 2025-12-09T17:02:20,618 adding 'multiqc/search_patterns.yaml' 2025-12-09T17:02:20,620 adding 'multiqc/types.py' 2025-12-09T17:02:20,622 adding 'multiqc/validation.py' 2025-12-09T17:02:20,623 adding 'multiqc/core/__init__.py' 2025-12-09T17:02:20,629 adding 'multiqc/core/ai.py' 2025-12-09T17:02:20,630 adding 'multiqc/core/config_check.py' 2025-12-09T17:02:20,632 adding 'multiqc/core/exceptions.py' 2025-12-09T17:02:20,633 adding 'multiqc/core/exec_modules.py' 2025-12-09T17:02:20,635 adding 'multiqc/core/file_search.py' 2025-12-09T17:02:20,637 adding 'multiqc/core/log_and_rich.py' 2025-12-09T17:02:20,639 adding 'multiqc/core/order_modules_and_sections.py' 2025-12-09T17:02:20,641 adding 'multiqc/core/plot_data_store.py' 2025-12-09T17:02:20,643 adding 'multiqc/core/plugin_hooks.py' 2025-12-09T17:02:20,644 adding 'multiqc/core/software_versions.py' 2025-12-09T17:02:20,646 adding 'multiqc/core/strict_helpers.py' 2025-12-09T17:02:20,647 adding 'multiqc/core/tmp_dir.py' 2025-12-09T17:02:20,649 adding 'multiqc/core/update_config.py' 2025-12-09T17:02:20,650 adding 'multiqc/core/version_check.py' 2025-12-09T17:02:20,653 adding 'multiqc/core/write_results.py' 2025-12-09T17:02:20,659 adding 'multiqc/core/special_case_modules/custom_content.py' 2025-12-09T17:02:20,662 adding 'multiqc/core/special_case_modules/load_multiqc_data.py' 2025-12-09T17:02:20,664 adding 'multiqc/core/special_case_modules/profile_runtime.py' 2025-12-09T17:02:20,666 adding 'multiqc/core/special_case_modules/software_versions.py' 2025-12-09T17:02:20,670 adding 'multiqc/modules/__init__.py' 2025-12-09T17:02:20,672 adding 'multiqc/modules/adapterremoval/__init__.py' 2025-12-09T17:02:20,674 adding 'multiqc/modules/adapterremoval/adapterremoval.py' 2025-12-09T17:02:20,676 adding 'multiqc/modules/afterqc/__init__.py' 2025-12-09T17:02:20,677 adding 'multiqc/modules/afterqc/afterqc.py' 2025-12-09T17:02:20,679 adding 'multiqc/modules/anglerfish/__init__.py' 2025-12-09T17:02:20,681 adding 'multiqc/modules/anglerfish/anglerfish.py' 2025-12-09T17:02:20,682 adding 'multiqc/modules/ataqv/__init__.py' 2025-12-09T17:02:20,684 adding 'multiqc/modules/ataqv/ataqv.py' 2025-12-09T17:02:20,686 adding 'multiqc/modules/bakta/__init__.py' 2025-12-09T17:02:20,688 adding 'multiqc/modules/bakta/bakta.py' 2025-12-09T17:02:20,690 adding 'multiqc/modules/bamdst/__init__.py' 2025-12-09T17:02:20,693 adding 'multiqc/modules/bamdst/bamdst.py' 2025-12-09T17:02:20,694 adding 'multiqc/modules/bamtools/__init__.py' 2025-12-09T17:02:20,696 adding 'multiqc/modules/bamtools/bamtools.py' 2025-12-09T17:02:20,697 adding 'multiqc/modules/bamtools/stats.py' 2025-12-09T17:02:20,699 adding 'multiqc/modules/bases2fastq/__init__.py' 2025-12-09T17:02:20,701 adding 'multiqc/modules/bases2fastq/bases2fastq.py' 2025-12-09T17:02:20,702 adding 'multiqc/modules/bases2fastq/plot_project_runs.py' 2025-12-09T17:02:20,704 adding 'multiqc/modules/bases2fastq/plot_runs.py' 2025-12-09T17:02:20,706 adding 'multiqc/modules/bases2fastq/plot_samples.py' 2025-12-09T17:02:20,708 adding 'multiqc/modules/bbduk/__init__.py' 2025-12-09T17:02:20,710 adding 'multiqc/modules/bbduk/bbduk.py' 2025-12-09T17:02:20,712 adding 'multiqc/modules/bbmap/__init__.py' 2025-12-09T17:02:20,714 adding 'multiqc/modules/bbmap/bbmap.py' 2025-12-09T17:02:20,716 adding 'multiqc/modules/bbmap/bbmap_filetypes.py' 2025-12-09T17:02:20,717 adding 'multiqc/modules/bbmap/plot_aqhist.py' 2025-12-09T17:02:20,719 adding 'multiqc/modules/bbmap/plot_basic_hist.py' 2025-12-09T17:02:20,720 adding 'multiqc/modules/bbmap/plot_bbsplit.py' 2025-12-09T17:02:20,721 adding 'multiqc/modules/bbmap/plot_bhist.py' 2025-12-09T17:02:20,722 adding 'multiqc/modules/bbmap/plot_bqhist.py' 2025-12-09T17:02:20,723 adding 'multiqc/modules/bbmap/plot_covhist.py' 2025-12-09T17:02:20,724 adding 'multiqc/modules/bbmap/plot_idhist.py' 2025-12-09T17:02:20,726 adding 'multiqc/modules/bbmap/plot_ihist.py' 2025-12-09T17:02:20,727 adding 'multiqc/modules/bbmap/plot_indelhist.py' 2025-12-09T17:02:20,728 adding 'multiqc/modules/bbmap/plot_mhist.py' 2025-12-09T17:02:20,729 adding 'multiqc/modules/bbmap/plot_qahist.py' 2025-12-09T17:02:20,730 adding 'multiqc/modules/bbmap/plot_qchist.py' 2025-12-09T17:02:20,732 adding 'multiqc/modules/bbmap/plot_qhist.py' 2025-12-09T17:02:20,733 adding 'multiqc/modules/bcftools/__init__.py' 2025-12-09T17:02:20,735 adding 'multiqc/modules/bcftools/bcftools.py' 2025-12-09T17:02:20,737 adding 'multiqc/modules/bcftools/stats.py' 2025-12-09T17:02:20,739 adding 'multiqc/modules/bcl2fastq/__init__.py' 2025-12-09T17:02:20,741 adding 'multiqc/modules/bcl2fastq/bcl2fastq.py' 2025-12-09T17:02:20,743 adding 'multiqc/modules/bclconvert/__init__.py' 2025-12-09T17:02:20,748 adding 'multiqc/modules/bclconvert/bclconvert.py' 2025-12-09T17:02:20,749 adding 'multiqc/modules/biobambam2/__init__.py' 2025-12-09T17:02:20,751 adding 'multiqc/modules/biobambam2/biobambam2.py' 2025-12-09T17:02:20,752 adding 'multiqc/modules/biobloomtools/__init__.py' 2025-12-09T17:02:20,754 adding 'multiqc/modules/biobloomtools/biobloomtools.py' 2025-12-09T17:02:20,755 adding 'multiqc/modules/biscuit/__init__.py' 2025-12-09T17:02:20,759 adding 'multiqc/modules/biscuit/biscuit.py' 2025-12-09T17:02:20,761 adding 'multiqc/modules/biscuit/tests/__init__.py' 2025-12-09T17:02:20,762 adding 'multiqc/modules/biscuit/tests/test_biscuit.py' 2025-12-09T17:02:20,764 adding 'multiqc/modules/bismark/__init__.py' 2025-12-09T17:02:20,766 adding 'multiqc/modules/bismark/bismark.py' 2025-12-09T17:02:20,768 adding 'multiqc/modules/bowtie1/__init__.py' 2025-12-09T17:02:20,769 adding 'multiqc/modules/bowtie1/bowtie1.py' 2025-12-09T17:02:20,771 adding 'multiqc/modules/bowtie2/__init__.py' 2025-12-09T17:02:20,773 adding 'multiqc/modules/bowtie2/bowtie2.py' 2025-12-09T17:02:20,775 adding 'multiqc/modules/busco/__init__.py' 2025-12-09T17:02:20,776 adding 'multiqc/modules/busco/busco.py' 2025-12-09T17:02:20,778 adding 'multiqc/modules/bustools/__init__.py' 2025-12-09T17:02:20,780 adding 'multiqc/modules/bustools/bustools.py' 2025-12-09T17:02:20,781 adding 'multiqc/modules/ccs/__init__.py' 2025-12-09T17:02:20,783 adding 'multiqc/modules/ccs/ccs.py' 2025-12-09T17:02:20,785 adding 'multiqc/modules/ccs/tests/__init__.py' 2025-12-09T17:02:20,786 adding 'multiqc/modules/ccs/tests/test_ccs.py' 2025-12-09T17:02:20,788 adding 'multiqc/modules/cellranger/__init__.py' 2025-12-09T17:02:20,789 adding 'multiqc/modules/cellranger/cellranger.py' 2025-12-09T17:02:20,792 adding 'multiqc/modules/cellranger/count.py' 2025-12-09T17:02:20,793 adding 'multiqc/modules/cellranger/utils.py' 2025-12-09T17:02:20,795 adding 'multiqc/modules/cellranger/vdj.py' 2025-12-09T17:02:20,797 adding 'multiqc/modules/cellranger_arc/__init__.py' 2025-12-09T17:02:20,799 adding 'multiqc/modules/cellranger_arc/cellranger_arc.py' 2025-12-09T17:02:20,801 adding 'multiqc/modules/cellranger_arc/utils.py' 2025-12-09T17:02:20,802 adding 'multiqc/modules/cellranger_arc/tests/__init__.py' 2025-12-09T17:02:20,803 adding 'multiqc/modules/cellranger_arc/tests/test_cellranger_arc.py' 2025-12-09T17:02:20,805 adding 'multiqc/modules/cells2stats/__init__.py' 2025-12-09T17:02:20,806 adding 'multiqc/modules/cells2stats/cells2stats.py' 2025-12-09T17:02:20,808 adding 'multiqc/modules/cells2stats/cells2stats_bar_plots.py' 2025-12-09T17:02:20,810 adding 'multiqc/modules/cells2stats/cells2stats_tables.py' 2025-12-09T17:02:20,812 adding 'multiqc/modules/cells2stats/queries.py' 2025-12-09T17:02:20,813 adding 'multiqc/modules/cells2stats/utils.py' 2025-12-09T17:02:20,815 adding 'multiqc/modules/checkm/__init__.py' 2025-12-09T17:02:20,816 adding 'multiqc/modules/checkm/checkm.py' 2025-12-09T17:02:20,818 adding 'multiqc/modules/checkm2/__init__.py' 2025-12-09T17:02:20,819 adding 'multiqc/modules/checkm2/checkm2.py' 2025-12-09T17:02:20,821 adding 'multiqc/modules/checkqc/__init__.py' 2025-12-09T17:02:20,823 adding 'multiqc/modules/checkqc/checkqc.py' 2025-12-09T17:02:20,825 adding 'multiqc/modules/clipandmerge/__init__.py' 2025-12-09T17:02:20,826 adding 'multiqc/modules/clipandmerge/clipandmerge.py' 2025-12-09T17:02:20,828 adding 'multiqc/modules/clusterflow/__init__.py' 2025-12-09T17:02:20,830 adding 'multiqc/modules/clusterflow/clusterflow.py' 2025-12-09T17:02:20,831 adding 'multiqc/modules/conpair/__init__.py' 2025-12-09T17:02:20,833 adding 'multiqc/modules/conpair/conpair.py' 2025-12-09T17:02:20,834 adding 'multiqc/modules/cutadapt/__init__.py' 2025-12-09T17:02:20,837 adding 'multiqc/modules/cutadapt/cutadapt.py' 2025-12-09T17:02:20,839 adding 'multiqc/modules/damageprofiler/__init__.py' 2025-12-09T17:02:20,841 adding 'multiqc/modules/damageprofiler/damageprofiler.py' 2025-12-09T17:02:20,842 adding 'multiqc/modules/dedup/__init__.py' 2025-12-09T17:02:20,844 adding 'multiqc/modules/dedup/dedup.py' 2025-12-09T17:02:20,845 adding 'multiqc/modules/deeptools/__init__.py' 2025-12-09T17:02:20,847 adding 'multiqc/modules/deeptools/bamPEFragmentSizeDistribution.py' 2025-12-09T17:02:20,848 adding 'multiqc/modules/deeptools/bamPEFragmentSizeTable.py' 2025-12-09T17:02:20,850 adding 'multiqc/modules/deeptools/deeptools.py' 2025-12-09T17:02:20,851 adding 'multiqc/modules/deeptools/estimateReadFiltering.py' 2025-12-09T17:02:20,853 adding 'multiqc/modules/deeptools/plotCorrelation.py' 2025-12-09T17:02:20,854 adding 'multiqc/modules/deeptools/plotCoverage.py' 2025-12-09T17:02:20,855 adding 'multiqc/modules/deeptools/plotEnrichment.py' 2025-12-09T17:02:20,857 adding 'multiqc/modules/deeptools/plotFingerprint.py' 2025-12-09T17:02:20,858 adding 'multiqc/modules/deeptools/plotPCA.py' 2025-12-09T17:02:20,860 adding 'multiqc/modules/deeptools/plotProfile.py' 2025-12-09T17:02:20,862 adding 'multiqc/modules/diamond/__init__.py' 2025-12-09T17:02:20,863 adding 'multiqc/modules/diamond/diamond.py' 2025-12-09T17:02:20,865 adding 'multiqc/modules/disambiguate/__init__.py' 2025-12-09T17:02:20,866 adding 'multiqc/modules/disambiguate/disambiguate.py' 2025-12-09T17:02:20,868 adding 'multiqc/modules/dragen/__init__.py' 2025-12-09T17:02:20,869 adding 'multiqc/modules/dragen/coverage_hist.py' 2025-12-09T17:02:20,877 adding 'multiqc/modules/dragen/coverage_metrics.py' 2025-12-09T17:02:20,880 adding 'multiqc/modules/dragen/coverage_per_contig.py' 2025-12-09T17:02:20,881 adding 'multiqc/modules/dragen/dragen.py' 2025-12-09T17:02:20,883 adding 'multiqc/modules/dragen/dragen_gc_metrics.py' 2025-12-09T17:02:20,884 adding 'multiqc/modules/dragen/fragment_length.py' 2025-12-09T17:02:20,887 adding 'multiqc/modules/dragen/mapping_metrics.py' 2025-12-09T17:02:20,889 adding 'multiqc/modules/dragen/overall_mean_cov.py' 2025-12-09T17:02:20,891 adding 'multiqc/modules/dragen/ploidy_estimation_metrics.py' 2025-12-09T17:02:20,892 adding 'multiqc/modules/dragen/rna_quant_metrics.py' 2025-12-09T17:02:20,893 adding 'multiqc/modules/dragen/rna_transcript_cov.py' 2025-12-09T17:02:20,895 adding 'multiqc/modules/dragen/sc_atac_metrics.py' 2025-12-09T17:02:20,896 adding 'multiqc/modules/dragen/sc_rna_metrics.py' 2025-12-09T17:02:20,898 adding 'multiqc/modules/dragen/time_metrics.py' 2025-12-09T17:02:20,899 adding 'multiqc/modules/dragen/trimmer_metrics.py' 2025-12-09T17:02:20,901 adding 'multiqc/modules/dragen/utils.py' 2025-12-09T17:02:20,904 adding 'multiqc/modules/dragen/vc_metrics.py' 2025-12-09T17:02:20,905 adding 'multiqc/modules/dragen/tests/__init__.py' 2025-12-09T17:02:20,906 adding 'multiqc/modules/dragen/tests/test_dragen.py' 2025-12-09T17:02:20,908 adding 'multiqc/modules/dragen_fastqc/__init__.py' 2025-12-09T17:02:20,909 adding 'multiqc/modules/dragen_fastqc/base_metrics.py' 2025-12-09T17:02:20,911 adding 'multiqc/modules/dragen_fastqc/content_metrics.py' 2025-12-09T17:02:20,913 adding 'multiqc/modules/dragen_fastqc/dragen_fastqc.py' 2025-12-09T17:02:20,914 adding 'multiqc/modules/dragen_fastqc/gc_metrics.py' 2025-12-09T17:02:20,916 adding 'multiqc/modules/dragen_fastqc/read_metrics.py' 2025-12-09T17:02:20,917 adding 'multiqc/modules/dragen_fastqc/util.py' 2025-12-09T17:02:20,920 adding 'multiqc/modules/dragen_fastqc/assets/js/multiqc_dragen_fastqc.js' 2025-12-09T17:02:20,922 adding 'multiqc/modules/eigenstratdatabasetools/__init__.py' 2025-12-09T17:02:20,923 adding 'multiqc/modules/eigenstratdatabasetools/eigenstratdatabasetools.py' 2025-12-09T17:02:20,925 adding 'multiqc/modules/fastp/__init__.py' 2025-12-09T17:02:20,927 adding 'multiqc/modules/fastp/fastp.py' 2025-12-09T17:02:20,929 adding 'multiqc/modules/fastq_screen/__init__.py' 2025-12-09T17:02:20,931 adding 'multiqc/modules/fastq_screen/fastq_screen.py' 2025-12-09T17:02:20,933 adding 'multiqc/modules/fastqc/__init__.py' 2025-12-09T17:02:20,940 adding 'multiqc/modules/fastqc/fastqc.py' 2025-12-09T17:02:20,942 adding 'multiqc/modules/fastqc/assets/css/multiqc_fastqc.css' 2025-12-09T17:02:20,945 adding 'multiqc/modules/fastqc/assets/js/multiqc_fastqc.js' 2025-12-09T17:02:20,947 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_genome.txt' 2025-12-09T17:02:20,948 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_hg38_txome.txt' 2025-12-09T17:02:20,950 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_genome.txt' 2025-12-09T17:02:20,951 adding 'multiqc/modules/fastqc/fastqc_theoretical_gc/fastqc_theoretical_gc_mm10_txome.txt' 2025-12-09T17:02:20,952 adding 'multiqc/modules/featurecounts/__init__.py' 2025-12-09T17:02:20,954 adding 'multiqc/modules/featurecounts/featurecounts.py' 2025-12-09T17:02:20,956 adding 'multiqc/modules/fgbio/__init__.py' 2025-12-09T17:02:20,957 adding 'multiqc/modules/fgbio/error_rate_by_read_position.py' 2025-12-09T17:02:20,959 adding 'multiqc/modules/fgbio/fgbio.py' 2025-12-09T17:02:20,960 adding 'multiqc/modules/fgbio/group_reads_by_umi.py' 2025-12-09T17:02:20,962 adding 'multiqc/modules/filtlong/__init__.py' 2025-12-09T17:02:20,963 adding 'multiqc/modules/filtlong/filtlong.py' 2025-12-09T17:02:20,965 adding 'multiqc/modules/flash/__init__.py' 2025-12-09T17:02:20,967 adding 'multiqc/modules/flash/flash.py' 2025-12-09T17:02:20,968 adding 'multiqc/modules/flexbar/__init__.py' 2025-12-09T17:02:20,970 adding 'multiqc/modules/flexbar/flexbar.py' 2025-12-09T17:02:20,972 adding 'multiqc/modules/freyja/__init__.py' 2025-12-09T17:02:20,973 adding 'multiqc/modules/freyja/freyja.py' 2025-12-09T17:02:20,975 adding 'multiqc/modules/ganon/__init__.py' 2025-12-09T17:02:20,977 adding 'multiqc/modules/ganon/ganon.py' 2025-12-09T17:02:20,978 adding 'multiqc/modules/gatk/__init__.py' 2025-12-09T17:02:20,981 adding 'multiqc/modules/gatk/analyze_saturation_mutagenesis.py' 2025-12-09T17:02:20,982 adding 'multiqc/modules/gatk/base_recalibrator.py' 2025-12-09T17:02:20,984 adding 'multiqc/modules/gatk/gatk.py' 2025-12-09T17:02:20,985 adding 'multiqc/modules/gatk/utils.py' 2025-12-09T17:02:20,987 adding 'multiqc/modules/gatk/varianteval.py' 2025-12-09T17:02:20,989 adding 'multiqc/modules/gffcompare/__init__.py' 2025-12-09T17:02:20,991 adding 'multiqc/modules/gffcompare/gffcompare.py' 2025-12-09T17:02:20,993 adding 'multiqc/modules/glimpse/__init__.py' 2025-12-09T17:02:20,994 adding 'multiqc/modules/glimpse/err_grp.py' 2025-12-09T17:02:20,996 adding 'multiqc/modules/glimpse/err_spl.py' 2025-12-09T17:02:20,998 adding 'multiqc/modules/glimpse/glimpse.py' 2025-12-09T17:02:20,999 adding 'multiqc/modules/goleft_indexcov/__init__.py' 2025-12-09T17:02:21,001 adding 'multiqc/modules/goleft_indexcov/goleft_indexcov.py' 2025-12-09T17:02:21,003 adding 'multiqc/modules/gopeaks/__init__.py' 2025-12-09T17:02:21,004 adding 'multiqc/modules/gopeaks/gopeaks.py' 2025-12-09T17:02:21,005 adding 'multiqc/modules/gtdbtk/__init__.py' 2025-12-09T17:02:21,007 adding 'multiqc/modules/gtdbtk/gtdbtk.py' 2025-12-09T17:02:21,009 adding 'multiqc/modules/haplocheck/__init__.py' 2025-12-09T17:02:21,010 adding 'multiqc/modules/haplocheck/haplocheck.py' 2025-12-09T17:02:21,012 adding 'multiqc/modules/happy/__init__.py' 2025-12-09T17:02:21,013 adding 'multiqc/modules/happy/happy.py' 2025-12-09T17:02:21,015 adding 'multiqc/modules/hicexplorer/__init__.py' 2025-12-09T17:02:21,017 adding 'multiqc/modules/hicexplorer/hicexplorer.py' 2025-12-09T17:02:21,018 adding 'multiqc/modules/hicpro/__init__.py' 2025-12-09T17:02:21,021 adding 'multiqc/modules/hicpro/hicpro.py' 2025-12-09T17:02:21,023 adding 'multiqc/modules/hicup/__init__.py' 2025-12-09T17:02:21,024 adding 'multiqc/modules/hicup/hicup.py' 2025-12-09T17:02:21,026 adding 'multiqc/modules/hifiasm/__init__.py' 2025-12-09T17:02:21,027 adding 'multiqc/modules/hifiasm/hifiasm.py' 2025-12-09T17:02:21,029 adding 'multiqc/modules/hisat2/__init__.py' 2025-12-09T17:02:21,031 adding 'multiqc/modules/hisat2/hisat2.py' 2025-12-09T17:02:21,033 adding 'multiqc/modules/homer/__init__.py' 2025-12-09T17:02:21,034 adding 'multiqc/modules/homer/findpeaks.py' 2025-12-09T17:02:21,036 adding 'multiqc/modules/homer/homer.py' 2025-12-09T17:02:21,038 adding 'multiqc/modules/homer/tagdirectory.py' 2025-12-09T17:02:21,039 adding 'multiqc/modules/hops/__init__.py' 2025-12-09T17:02:21,041 adding 'multiqc/modules/hops/hops.py' 2025-12-09T17:02:21,043 adding 'multiqc/modules/hostile/__init__.py' 2025-12-09T17:02:21,044 adding 'multiqc/modules/hostile/hostile.py' 2025-12-09T17:02:21,046 adding 'multiqc/modules/htseq/__init__.py' 2025-12-09T17:02:21,047 adding 'multiqc/modules/htseq/htseq.py' 2025-12-09T17:02:21,049 adding 'multiqc/modules/humid/__init__.py' 2025-12-09T17:02:21,050 adding 'multiqc/modules/humid/clusters.py' 2025-12-09T17:02:21,052 adding 'multiqc/modules/humid/counts.py' 2025-12-09T17:02:21,053 adding 'multiqc/modules/humid/humid.py' 2025-12-09T17:02:21,054 adding 'multiqc/modules/humid/neighbours.py' 2025-12-09T17:02:21,056 adding 'multiqc/modules/humid/stats.py' 2025-12-09T17:02:21,058 adding 'multiqc/modules/interop/__init__.py' 2025-12-09T17:02:21,060 adding 'multiqc/modules/interop/interop.py' 2025-12-09T17:02:21,061 adding 'multiqc/modules/isoseq/__init__.py' 2025-12-09T17:02:21,063 adding 'multiqc/modules/isoseq/isoseq.py' 2025-12-09T17:02:21,065 adding 'multiqc/modules/ivar/__init__.py' 2025-12-09T17:02:21,067 adding 'multiqc/modules/ivar/ivar.py' 2025-12-09T17:02:21,068 adding 'multiqc/modules/jcvi/__init__.py' 2025-12-09T17:02:21,070 adding 'multiqc/modules/jcvi/jcvi.py' 2025-12-09T17:02:21,072 adding 'multiqc/modules/jellyfish/__init__.py' 2025-12-09T17:02:21,074 adding 'multiqc/modules/jellyfish/jellyfish.py' 2025-12-09T17:02:21,076 adding 'multiqc/modules/kaiju/__init__.py' 2025-12-09T17:02:21,078 adding 'multiqc/modules/kaiju/kaiju.py' 2025-12-09T17:02:21,080 adding 'multiqc/modules/kallisto/__init__.py' 2025-12-09T17:02:21,082 adding 'multiqc/modules/kallisto/kallisto.py' 2025-12-09T17:02:21,083 adding 'multiqc/modules/kat/__init__.py' 2025-12-09T17:02:21,085 adding 'multiqc/modules/kat/kat.py' 2025-12-09T17:02:21,086 adding 'multiqc/modules/kraken/__init__.py' 2025-12-09T17:02:21,089 adding 'multiqc/modules/kraken/kraken.py' 2025-12-09T17:02:21,091 adding 'multiqc/modules/leehom/__init__.py' 2025-12-09T17:02:21,092 adding 'multiqc/modules/leehom/leehom.py' 2025-12-09T17:02:21,094 adding 'multiqc/modules/librarian/__init__.py' 2025-12-09T17:02:21,096 adding 'multiqc/modules/librarian/librarian.py' 2025-12-09T17:02:21,097 adding 'multiqc/modules/lima/__init__.py' 2025-12-09T17:02:21,100 adding 'multiqc/modules/lima/lima.py' 2025-12-09T17:02:21,102 adding 'multiqc/modules/longranger/__init__.py' 2025-12-09T17:02:21,104 adding 'multiqc/modules/longranger/longranger.py' 2025-12-09T17:02:21,106 adding 'multiqc/modules/macs2/__init__.py' 2025-12-09T17:02:21,107 adding 'multiqc/modules/macs2/macs2.py' 2025-12-09T17:02:21,109 adding 'multiqc/modules/malt/__init__.py' 2025-12-09T17:02:21,110 adding 'multiqc/modules/malt/malt.py' 2025-12-09T17:02:21,112 adding 'multiqc/modules/mapdamage/__init__.py' 2025-12-09T17:02:21,114 adding 'multiqc/modules/mapdamage/mapdamage.py' 2025-12-09T17:02:21,116 adding 'multiqc/modules/megahit/__init__.py' 2025-12-09T17:02:21,117 adding 'multiqc/modules/megahit/megahit.py' 2025-12-09T17:02:21,119 adding 'multiqc/modules/metaphlan/__init__.py' 2025-12-09T17:02:21,121 adding 'multiqc/modules/metaphlan/metaphlan.py' 2025-12-09T17:02:21,122 adding 'multiqc/modules/methylqa/__init__.py' 2025-12-09T17:02:21,124 adding 'multiqc/modules/methylqa/methylqa.py' 2025-12-09T17:02:21,125 adding 'multiqc/modules/mgikit/__init__.py' 2025-12-09T17:02:21,128 adding 'multiqc/modules/mgikit/mgikit.py' 2025-12-09T17:02:21,129 adding 'multiqc/modules/minionqc/__init__.py' 2025-12-09T17:02:21,131 adding 'multiqc/modules/minionqc/minionqc.py' 2025-12-09T17:02:21,133 adding 'multiqc/modules/mirtop/__init__.py' 2025-12-09T17:02:21,134 adding 'multiqc/modules/mirtop/mirtop.py' 2025-12-09T17:02:21,136 adding 'multiqc/modules/mirtrace/__init__.py' 2025-12-09T17:02:21,138 adding 'multiqc/modules/mirtrace/mirtrace.py' 2025-12-09T17:02:21,140 adding 'multiqc/modules/mosaicatcher/__init__.py' 2025-12-09T17:02:21,141 adding 'multiqc/modules/mosaicatcher/mosaicatcher.py' 2025-12-09T17:02:21,143 adding 'multiqc/modules/mosdepth/__init__.py' 2025-12-09T17:02:21,146 adding 'multiqc/modules/mosdepth/mosdepth.py' 2025-12-09T17:02:21,147 adding 'multiqc/modules/motus/__init__.py' 2025-12-09T17:02:21,149 adding 'multiqc/modules/motus/motus.py' 2025-12-09T17:02:21,151 adding 'multiqc/modules/mtnucratio/__init__.py' 2025-12-09T17:02:21,152 adding 'multiqc/modules/mtnucratio/mtnucratio.py' 2025-12-09T17:02:21,154 adding 'multiqc/modules/multivcfanalyzer/__init__.py' 2025-12-09T17:02:21,156 adding 'multiqc/modules/multivcfanalyzer/multivcfanalyzer.py' 2025-12-09T17:02:21,157 adding 'multiqc/modules/nanoq/__init__.py' 2025-12-09T17:02:21,159 adding 'multiqc/modules/nanoq/nanoq.py' 2025-12-09T17:02:21,161 adding 'multiqc/modules/nanostat/__init__.py' 2025-12-09T17:02:21,163 adding 'multiqc/modules/nanostat/nanostat.py' 2025-12-09T17:02:21,165 adding 'multiqc/modules/nextclade/__init__.py' 2025-12-09T17:02:21,167 adding 'multiqc/modules/nextclade/nextclade.py' 2025-12-09T17:02:21,169 adding 'multiqc/modules/ngsbits/__init__.py' 2025-12-09T17:02:21,170 adding 'multiqc/modules/ngsbits/mappingqc.py' 2025-12-09T17:02:21,171 adding 'multiqc/modules/ngsbits/ngsbits.py' 2025-12-09T17:02:21,173 adding 'multiqc/modules/ngsbits/readqc.py' 2025-12-09T17:02:21,175 adding 'multiqc/modules/ngsbits/samplegender.py' 2025-12-09T17:02:21,176 adding 'multiqc/modules/ngsbits/utils.py' 2025-12-09T17:02:21,178 adding 'multiqc/modules/ngsderive/__init__.py' 2025-12-09T17:02:21,180 adding 'multiqc/modules/ngsderive/ngsderive.py' 2025-12-09T17:02:21,182 adding 'multiqc/modules/nonpareil/__init__.py' 2025-12-09T17:02:21,184 adding 'multiqc/modules/nonpareil/nonpareil.py' 2025-12-09T17:02:21,185 adding 'multiqc/modules/odgi/__init__.py' 2025-12-09T17:02:21,188 adding 'multiqc/modules/odgi/odgi.py' 2025-12-09T17:02:21,189 adding 'multiqc/modules/optitype/__init__.py' 2025-12-09T17:02:21,191 adding 'multiqc/modules/optitype/optitype.py' 2025-12-09T17:02:21,193 adding 'multiqc/modules/pairtools/__init__.py' 2025-12-09T17:02:21,195 adding 'multiqc/modules/pairtools/pairtools.py' 2025-12-09T17:02:21,196 adding 'multiqc/modules/pairtools/params.yml' 2025-12-09T17:02:21,198 adding 'multiqc/modules/pairtools/utils.py' 2025-12-09T17:02:21,200 adding 'multiqc/modules/pangolin/__init__.py' 2025-12-09T17:02:21,202 adding 'multiqc/modules/pangolin/pangolin.py' 2025-12-09T17:02:21,203 adding 'multiqc/modules/pbmarkdup/__init__.py' 2025-12-09T17:02:21,205 adding 'multiqc/modules/pbmarkdup/pbmarkdup.py' 2025-12-09T17:02:21,206 adding 'multiqc/modules/peddy/__init__.py' 2025-12-09T17:02:21,208 adding 'multiqc/modules/peddy/peddy.py' 2025-12-09T17:02:21,210 adding 'multiqc/modules/percolator/__init__.py' 2025-12-09T17:02:21,212 adding 'multiqc/modules/percolator/percolator.py' 2025-12-09T17:02:21,213 adding 'multiqc/modules/phantompeakqualtools/__init__.py' 2025-12-09T17:02:21,214 adding 'multiqc/modules/phantompeakqualtools/phantompeakqualtools.py' 2025-12-09T17:02:21,217 adding 'multiqc/modules/picard/AlignmentSummaryMetrics.py' 2025-12-09T17:02:21,218 adding 'multiqc/modules/picard/BaseDistributionByCycleMetrics.py' 2025-12-09T17:02:21,221 adding 'multiqc/modules/picard/CrosscheckFingerprints.py' 2025-12-09T17:02:21,222 adding 'multiqc/modules/picard/ExtractIlluminaBarcodes.py' 2025-12-09T17:02:21,224 adding 'multiqc/modules/picard/GcBiasMetrics.py' 2025-12-09T17:02:21,226 adding 'multiqc/modules/picard/HsMetrics.py' 2025-12-09T17:02:21,228 adding 'multiqc/modules/picard/IlluminaBasecallingMetrics.py' 2025-12-09T17:02:21,229 adding 'multiqc/modules/picard/IlluminaLaneMetrics.py' 2025-12-09T17:02:21,231 adding 'multiqc/modules/picard/InsertSizeMetrics.py' 2025-12-09T17:02:21,233 adding 'multiqc/modules/picard/MarkDuplicates.py' 2025-12-09T17:02:21,235 adding 'multiqc/modules/picard/MarkIlluminaAdapters.py' 2025-12-09T17:02:21,236 adding 'multiqc/modules/picard/OxoGMetrics.py' 2025-12-09T17:02:21,238 adding 'multiqc/modules/picard/QualityByCycleMetrics.py' 2025-12-09T17:02:21,239 adding 'multiqc/modules/picard/QualityScoreDistributionMetrics.py' 2025-12-09T17:02:21,241 adding 'multiqc/modules/picard/QualityYieldMetrics.py' 2025-12-09T17:02:21,242 adding 'multiqc/modules/picard/RnaSeqMetrics.py' 2025-12-09T17:02:21,244 adding 'multiqc/modules/picard/RrbsSummaryMetrics.py' 2025-12-09T17:02:21,245 adding 'multiqc/modules/picard/TargetedPcrMetrics.py' 2025-12-09T17:02:21,248 adding 'multiqc/modules/picard/ValidateSamFile.py' 2025-12-09T17:02:21,250 adding 'multiqc/modules/picard/VariantCallingMetrics.py' 2025-12-09T17:02:21,252 adding 'multiqc/modules/picard/WgsMetrics.py' 2025-12-09T17:02:21,253 adding 'multiqc/modules/picard/__init__.py' 2025-12-09T17:02:21,255 adding 'multiqc/modules/picard/picard.py' 2025-12-09T17:02:21,257 adding 'multiqc/modules/picard/util.py' 2025-12-09T17:02:21,258 adding 'multiqc/modules/picard/tests/__init__.py' 2025-12-09T17:02:21,260 adding 'multiqc/modules/picard/tests/test_picard.py' 2025-12-09T17:02:21,262 adding 'multiqc/modules/porechop/__init__.py' 2025-12-09T17:02:21,263 adding 'multiqc/modules/porechop/porechop.py' 2025-12-09T17:02:21,265 adding 'multiqc/modules/preseq/__init__.py' 2025-12-09T17:02:21,268 adding 'multiqc/modules/preseq/preseq.py' 2025-12-09T17:02:21,269 adding 'multiqc/modules/prinseqplusplus/__init__.py' 2025-12-09T17:02:21,271 adding 'multiqc/modules/prinseqplusplus/prinseqplusplus.py' 2025-12-09T17:02:21,273 adding 'multiqc/modules/prokka/__init__.py' 2025-12-09T17:02:21,274 adding 'multiqc/modules/prokka/prokka.py' 2025-12-09T17:02:21,276 adding 'multiqc/modules/purple/__init__.py' 2025-12-09T17:02:21,278 adding 'multiqc/modules/purple/purple.py' 2025-12-09T17:02:21,280 adding 'multiqc/modules/pychopper/__init__.py' 2025-12-09T17:02:21,281 adding 'multiqc/modules/pychopper/pychopper.py' 2025-12-09T17:02:21,283 adding 'multiqc/modules/pycoqc/__init__.py' 2025-12-09T17:02:21,285 adding 'multiqc/modules/pycoqc/pycoqc.py' 2025-12-09T17:02:21,287 adding 'multiqc/modules/qc3C/__init__.py' 2025-12-09T17:02:21,291 adding 'multiqc/modules/qc3C/qc3C.py' 2025-12-09T17:02:21,293 adding 'multiqc/modules/qorts/__init__.py' 2025-12-09T17:02:21,295 adding 'multiqc/modules/qorts/qorts.py' 2025-12-09T17:02:21,299 adding 'multiqc/modules/qualimap/QM_BamQC.py' 2025-12-09T17:02:21,301 adding 'multiqc/modules/qualimap/QM_RNASeq.py' 2025-12-09T17:02:21,302 adding 'multiqc/modules/qualimap/__init__.py' 2025-12-09T17:02:21,304 adding 'multiqc/modules/qualimap/qualimap.py' 2025-12-09T17:02:21,305 adding 'multiqc/modules/quast/__init__.py' 2025-12-09T17:02:21,307 adding 'multiqc/modules/quast/quast.py' 2025-12-09T17:02:21,309 adding 'multiqc/modules/ribotish/__init__.py' 2025-12-09T17:02:21,311 adding 'multiqc/modules/ribotish/ribotish.py' 2025-12-09T17:02:21,313 adding 'multiqc/modules/ribotish/tests/__init__.py' 2025-12-09T17:02:21,314 adding 'multiqc/modules/ribotish/tests/test_ribotish.py' 2025-12-09T17:02:21,316 adding 'multiqc/modules/rna_seqc/__init__.py' 2025-12-09T17:02:21,318 adding 'multiqc/modules/rna_seqc/rna_seqc.py' 2025-12-09T17:02:21,320 adding 'multiqc/modules/rockhopper/__init__.py' 2025-12-09T17:02:21,321 adding 'multiqc/modules/rockhopper/rockhopper.py' 2025-12-09T17:02:21,323 adding 'multiqc/modules/rsem/__init__.py' 2025-12-09T17:02:21,325 adding 'multiqc/modules/rsem/rsem.py' 2025-12-09T17:02:21,326 adding 'multiqc/modules/rseqc/__init__.py' 2025-12-09T17:02:21,328 adding 'multiqc/modules/rseqc/bam_stat.py' 2025-12-09T17:02:21,329 adding 'multiqc/modules/rseqc/gene_body_coverage.py' 2025-12-09T17:02:21,331 adding 'multiqc/modules/rseqc/infer_experiment.py' 2025-12-09T17:02:21,332 adding 'multiqc/modules/rseqc/inner_distance.py' 2025-12-09T17:02:21,334 adding 'multiqc/modules/rseqc/junction_annotation.py' 2025-12-09T17:02:21,335 adding 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adding 'multiqc/modules/seqera_cli/seqera_cli.py' 2025-12-09T17:02:21,381 adding 'multiqc/modules/seqfu/__init__.py' 2025-12-09T17:02:21,383 adding 'multiqc/modules/seqfu/seqfu.py' 2025-12-09T17:02:21,384 adding 'multiqc/modules/seqfu/stats.py' 2025-12-09T17:02:21,386 adding 'multiqc/modules/seqfu/test/test_stats.py' 2025-12-09T17:02:21,388 adding 'multiqc/modules/seqkit/__init__.py' 2025-12-09T17:02:21,389 adding 'multiqc/modules/seqkit/seqkit.py' 2025-12-09T17:02:21,391 adding 'multiqc/modules/seqkit/stats.py' 2025-12-09T17:02:21,393 adding 'multiqc/modules/seqkit/tests/__init__.py' 2025-12-09T17:02:21,394 adding 'multiqc/modules/seqkit/tests/test_stats.py' 2025-12-09T17:02:21,396 adding 'multiqc/modules/sequali/__init__.py' 2025-12-09T17:02:21,399 adding 'multiqc/modules/sequali/sequali.py' 2025-12-09T17:02:21,401 adding 'multiqc/modules/seqwho/__init__.py' 2025-12-09T17:02:21,402 adding 'multiqc/modules/seqwho/seqwho.py' 2025-12-09T17:02:21,404 adding 'multiqc/modules/seqyclean/__init__.py' 2025-12-09T17:02:21,405 adding 'multiqc/modules/seqyclean/seqyclean.py' 2025-12-09T17:02:21,407 adding 'multiqc/modules/sexdeterrmine/__init__.py' 2025-12-09T17:02:21,409 adding 'multiqc/modules/sexdeterrmine/sexdeterrmine.py' 2025-12-09T17:02:21,410 adding 'multiqc/modules/sickle/__init__.py' 2025-12-09T17:02:21,412 adding 'multiqc/modules/sickle/sickle.py' 2025-12-09T17:02:21,413 adding 'multiqc/modules/skewer/__init__.py' 2025-12-09T17:02:21,415 adding 'multiqc/modules/skewer/skewer.py' 2025-12-09T17:02:21,417 adding 'multiqc/modules/slamdunk/__init__.py' 2025-12-09T17:02:21,419 adding 'multiqc/modules/slamdunk/slamdunk.py' 2025-12-09T17:02:21,421 adding 'multiqc/modules/snippy/__init__.py' 2025-12-09T17:02:21,422 adding 'multiqc/modules/snippy/snippy.py' 2025-12-09T17:02:21,424 adding 'multiqc/modules/snpeff/__init__.py' 2025-12-09T17:02:21,426 adding 'multiqc/modules/snpeff/snpeff.py' 2025-12-09T17:02:21,428 adding 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2025-12-09T17:02:21,479 adding 'multiqc/modules/tophat/tophat.py' 2025-12-09T17:02:21,481 adding 'multiqc/modules/trimmomatic/__init__.py' 2025-12-09T17:02:21,483 adding 'multiqc/modules/trimmomatic/trimmomatic.py' 2025-12-09T17:02:21,484 adding 'multiqc/modules/truvari/__init__.py' 2025-12-09T17:02:21,486 adding 'multiqc/modules/truvari/truvari.py' 2025-12-09T17:02:21,488 adding 'multiqc/modules/umicollapse/__init__.py' 2025-12-09T17:02:21,490 adding 'multiqc/modules/umicollapse/umicollapse.py' 2025-12-09T17:02:21,491 adding 'multiqc/modules/umicollapse/tests/__init__.py' 2025-12-09T17:02:21,493 adding 'multiqc/modules/umicollapse/tests/test_umicollapse.py' 2025-12-09T17:02:21,494 adding 'multiqc/modules/umitools/__init__.py' 2025-12-09T17:02:21,496 adding 'multiqc/modules/umitools/umitools.py' 2025-12-09T17:02:21,498 adding 'multiqc/modules/umitools/tests/__init__.py' 2025-12-09T17:02:21,499 adding 'multiqc/modules/umitools/tests/test_umitools.py' 2025-12-09T17:02:21,500 adding 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2025-12-09T17:02:23,841 adding 'multiqc/utils/material_icons/mdi-minus.svg' 2025-12-09T17:02:23,842 adding 'multiqc/utils/material_icons/mdi-pencil.svg' 2025-12-09T17:02:23,843 adding 'multiqc/utils/material_icons/mdi-pin.svg' 2025-12-09T17:02:23,844 adding 'multiqc/utils/material_icons/mdi-plus.svg' 2025-12-09T17:02:23,845 adding 'multiqc/utils/material_icons/mdi-printer.svg' 2025-12-09T17:02:23,846 adding 'multiqc/utils/material_icons/mdi-qrcode.svg' 2025-12-09T17:02:23,847 adding 'multiqc/utils/material_icons/mdi-radiobox-blank.svg' 2025-12-09T17:02:23,849 adding 'multiqc/utils/material_icons/mdi-radiobox-marked.svg' 2025-12-09T17:02:23,850 adding 'multiqc/utils/material_icons/mdi-refresh.svg' 2025-12-09T17:02:23,851 adding 'multiqc/utils/material_icons/mdi-school.svg' 2025-12-09T17:02:23,852 adding 'multiqc/utils/material_icons/mdi-share.svg' 2025-12-09T17:02:23,853 adding 'multiqc/utils/material_icons/mdi-sort.svg' 2025-12-09T17:02:23,854 adding 'multiqc/utils/material_icons/mdi-star.svg' 2025-12-09T17:02:23,855 adding 'multiqc/utils/material_icons/mdi-table.svg' 2025-12-09T17:02:23,856 adding 'multiqc/utils/material_icons/mdi-thumb-down.svg' 2025-12-09T17:02:23,858 adding 'multiqc/utils/material_icons/mdi-thumb-up.svg' 2025-12-09T17:02:23,859 adding 'multiqc/utils/material_icons/mdi-view-column.svg' 2025-12-09T17:02:23,860 adding 'multiqc/utils/material_icons/mdi-view-dashboard.svg' 2025-12-09T17:02:23,861 adding 'multiqc/utils/material_icons/mdi-violin.svg' 2025-12-09T17:02:23,862 adding 'multiqc/utils/material_icons/mdi-warning.svg' 2025-12-09T17:02:23,863 adding 'multiqc/utils/material_icons/mdi-weather-night.svg' 2025-12-09T17:02:23,865 adding 'multiqc/utils/material_icons/mdi-weather-sunny.svg' 2025-12-09T17:02:23,866 adding 'multiqc/utils/material_icons/mdi-youtube.svg' 2025-12-09T17:02:23,873 adding 'multiqc-1.33.dist-info/licenses/LICENSE' 2025-12-09T17:02:23,880 adding 'multiqc-1.33.dist-info/METADATA' 2025-12-09T17:02:23,882 adding 'multiqc-1.33.dist-info/WHEEL' 2025-12-09T17:02:23,883 adding 'multiqc-1.33.dist-info/entry_points.txt' 2025-12-09T17:02:23,884 adding 'multiqc-1.33.dist-info/top_level.txt' 2025-12-09T17:02:23,897 adding 'multiqc-1.33.dist-info/RECORD' 2025-12-09T17:02:23,966 removing build/bdist.linux-armv7l/wheel 2025-12-09T17:02:24,362 Building wheel for multiqc (pyproject.toml): finished with status 'done' 2025-12-09T17:02:24,484 Created wheel for multiqc: filename=multiqc-1.33-py3-none-any.whl size=5672939 sha256=91058ba9a829f6111820a2073d57577a894ed6d9ad117d0ae41848e8c26639df 2025-12-09T17:02:24,485 Stored in directory: /tmp/pip-ephem-wheel-cache-foej5kc6/wheels/95/d4/0f/98df96b49eb8ec657f20b034bbcb8414201f6bf74b73ef5c52 2025-12-09T17:02:24,543 Successfully built multiqc 2025-12-09T17:02:24,695 Removed build tracker: '/tmp/pip-build-tracker-s_4bmjtu'