2025-12-10T13:02:37,678 Created temporary directory: /tmp/pip-ephem-wheel-cache-kfwbz1kw 2025-12-10T13:02:37,681 Created temporary directory: /tmp/pip-build-tracker-6g6czfzc 2025-12-10T13:02:37,682 Initialized build tracking at /tmp/pip-build-tracker-6g6czfzc 2025-12-10T13:02:37,682 Created build tracker: /tmp/pip-build-tracker-6g6czfzc 2025-12-10T13:02:37,683 Entered build tracker: /tmp/pip-build-tracker-6g6czfzc 2025-12-10T13:02:37,683 Created temporary directory: /tmp/pip-wheel-ql3_wfgt 2025-12-10T13:02:37,686 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-10T13:02:37,689 Created temporary directory: /tmp/pip-ephem-wheel-cache-43i503wa 2025-12-10T13:02:37,714 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-10T13:02:37,718 2 location(s) to search for versions of xicommon: 2025-12-10T13:02:37,718 * https://pypi.org/simple/xicommon/ 2025-12-10T13:02:37,718 * https://www.piwheels.org/simple/xicommon/ 2025-12-10T13:02:37,718 Fetching project page and analyzing links: https://pypi.org/simple/xicommon/ 2025-12-10T13:02:37,719 Getting page https://pypi.org/simple/xicommon/ 2025-12-10T13:02:37,721 Found index url https://pypi.org/simple 2025-12-10T13:02:37,934 Fetched page https://pypi.org/simple/xicommon/ as application/vnd.pypi.simple.v1+json 2025-12-10T13:02:37,947 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/11/4b/24e68e6e2d923d1bae1cc35a78c09e787c67e5b72d3a99df8a06291963ca/xicommon-1.0.3rc1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,948 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/3a/ec/d0904bede98861e4150d1b5e8cf2eb99e1a3542eecb13d0f67e05ddf8611/xicommon-1.0.3rc1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,948 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/82/3d/841600e2a204f5919932b0e8b4e116833a0ceb4469fdb4f990ddce2d999d/xicommon-1.0.3rc1-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,949 Skipping link: No binaries permitted for xicommon: 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https://files.pythonhosted.org/packages/cf/9f/6cee7b5a18d36c4bd7abbbc68e03d8bf7b04dceb1807962e044858a55f36/xicommon-1.0.4-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,960 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/24/36/4c7a20af0d98f9883df5176e260c3c211a9514122850300e5ccd682eb24c/xicommon-1.0.4-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,961 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/0a/8e/e760db49c7b96cea46dad04f563f6a396d9dad7427fc2bb727a9ce1c7222/xicommon-1.0.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,961 Skipping link: No binaries permitted for xicommon: 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https://files.pythonhosted.org/packages/4c/16/3831af15cacd9f768767f0f29518c89d15621a82e2ca8721f56277554681/xicommon-1.0.4-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,965 Found link https://files.pythonhosted.org/packages/76/de/ff1a028a142b2e511f4a444f0ee056f991da701c16e9058fc8ef9bb0b839/xicommon-1.0.4.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.4 2025-12-10T13:02:37,965 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/a3/5c/0c8f8c445d13ee85f81473f781ae8bd5847d431c1456529ca4514d8b21f9/xicommon-1.0.6-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,966 Skipping link: No binaries permitted for xicommon: 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https://files.pythonhosted.org/packages/13/4c/aea405f16539c47d7ce791a29b7ee4c2267427957f4d63df4fa9556c17e3/xicommon-1.0.7-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,981 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/79/bf/8f170b0bafb0131b81752a516feb26d66b4037122d806e3c16150e19e38e/xicommon-1.0.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,982 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/b1/bf/97ffa82ce4d6ea0b5df36e073132b06234fbbb893f6f06720903238db3e3/xicommon-1.0.7-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,982 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/b5/73/dcd4a3a6edd00f309914aa57c07eaceb2d3128fa4f777251549f19053e04/xicommon-1.0.7-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,984 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c1/41/e3e993f2664be0239d13b4e13fe7e36a037615a2a890ee52662ead6aaf48/xicommon-1.0.7-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,984 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/6a/b3/07ebb551b3d13e22b17a6074c34a440dc9e4c790b35e8b37572f14fa0ebc/xicommon-1.0.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,985 Found link https://files.pythonhosted.org/packages/e1/83/3cd18d592a04ed3108f58e246fc0b222ffb7a6bdd716a065164819235bdc/xicommon-1.0.7.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.7 2025-12-10T13:02:37,986 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/e2/65/e6140b80015036058fc38dcf1a305999946c34a4bc2cddcd166a2ed5de8b/xicommon-1.0.8-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,987 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/65/53/c3a003d68e635d6f0eb9574e20cc5e8666501b4205fba514deb2503c6d0f/xicommon-1.0.8-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,988 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/ea/8f/ec8f623dca4baa46212aec99086f86cfb09b6d0da5ceef57b9dce8596d3f/xicommon-1.0.8-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,988 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/54/42/f7007e3d4abc2161c25a676b2fb0242ad7981ffe9912377619c09193289c/xicommon-1.0.8-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,989 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c2/95/7be1f9b685457c1ba0c5b45d544014014fb137709f0b206499cd0687cf21/xicommon-1.0.8-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,990 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c1/07/747b642a01aa97bfbf26032675dbcfb83b00716cca5a7f11e7bcb598d56a/xicommon-1.0.8-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,990 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/eb/a6/2ed8c42677873924b2fdc30d138efa46e66d0d04dc4109ce1a9a878fbc4b/xicommon-1.0.8-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,991 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/0b/af/7837982695e9fddac3b2f51f8a9075222e34696fa83162f794731fd07f36/xicommon-1.0.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,992 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/c5/6f/ed14e73ce848f9b110508dab4e6bfd8982913e47e3ca58f3dab0597ba1ab/xicommon-1.0.8-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,993 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/6a/d4/317cfacab2ea6cf4b61f8bd07fb970ca27968f94c37ad97fe9e46d1ce4c6/xicommon-1.0.8-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,994 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/93/d3/51a8af6df22e522d2924bd87a6640543b271561abe13c9473ca1db270879/xicommon-1.0.8-cp312-cp312-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,994 Skipping link: No binaries permitted for xicommon: https://files.pythonhosted.org/packages/58/bb/a69f8205f8983a879619cdcf08457186e4b9c92233c1a202100f9dd4f778/xicommon-1.0.8-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:37,996 Found link https://files.pythonhosted.org/packages/9a/c4/27af46f4348e3049b6fb433add3c18919c814d400e2ad81f4c9fdd87239a/xicommon-1.0.8.tar.gz (from https://pypi.org/simple/xicommon/) (requires-python:>=3.10.1), version: 1.0.8 2025-12-10T13:02:37,997 Fetching project page and analyzing links: https://www.piwheels.org/simple/xicommon/ 2025-12-10T13:02:37,997 Getting page https://www.piwheels.org/simple/xicommon/ 2025-12-10T13:02:37,999 Found index url https://www.piwheels.org/simple 2025-12-10T13:02:38,172 Fetched page https://www.piwheels.org/simple/xicommon/ as text/html 2025-12-10T13:02:38,177 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=b308bae77eb4b0c0583eef069546942cec293c12902b2f96fcf3c1ac98c7f906 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,178 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=b308bae77eb4b0c0583eef069546942cec293c12902b2f96fcf3c1ac98c7f906 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,178 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=e56a6ac9cf2d81326457dc65d9c0b17dbd2627ee4fbdce9864187458d42874d5 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,179 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=e56a6ac9cf2d81326457dc65d9c0b17dbd2627ee4fbdce9864187458d42874d5 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,180 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp313-cp313-linux_armv6l.whl#sha256=264c8a827a60240e1531a961b60bedd7a78c7699e37b3d4deba4db6d4fe9d5e8 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,181 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.6-cp313-cp313-linux_armv7l.whl#sha256=264c8a827a60240e1531a961b60bedd7a78c7699e37b3d4deba4db6d4fe9d5e8 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,181 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp311-cp311-linux_armv6l.whl#sha256=abf452c977d9b9954118366e531164ab1eed5e1053b91ccc42929fc770e41c0c (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,182 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp311-cp311-linux_armv7l.whl#sha256=abf452c977d9b9954118366e531164ab1eed5e1053b91ccc42929fc770e41c0c (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,182 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp313-cp313-linux_armv6l.whl#sha256=90d7602df1d7aa33553c5b06e35870c304080e9f8a606a1892481613f775d031 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,183 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.4-cp313-cp313-linux_armv7l.whl#sha256=90d7602df1d7aa33553c5b06e35870c304080e9f8a606a1892481613f775d031 (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,184 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp311-cp311-linux_armv6l.whl#sha256=761a5e877631f9c83264844fb826a70ba4c321b5e3162d82f6de9bd1b99b052e (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,184 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp311-cp311-linux_armv7l.whl#sha256=761a5e877631f9c83264844fb826a70ba4c321b5e3162d82f6de9bd1b99b052e (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,185 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp313-cp313-linux_armv6l.whl#sha256=6073e5fc6b8caea94b65ff757dd01271bd86ea18044eab364f9db54f077b3d8d (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,185 Skipping link: No binaries permitted for xicommon: https://www.piwheels.org/simple/xicommon/xicommon-1.0.3rc1-cp313-cp313-linux_armv7l.whl#sha256=6073e5fc6b8caea94b65ff757dd01271bd86ea18044eab364f9db54f077b3d8d (from https://www.piwheels.org/simple/xicommon/) (requires-python:>=3.10.1) 2025-12-10T13:02:38,186 Skipping link: not a file: https://www.piwheels.org/simple/xicommon/ 2025-12-10T13:02:38,186 Skipping link: not a file: https://pypi.org/simple/xicommon/ 2025-12-10T13:02:38,206 Given no hashes to check 1 links for project 'xicommon': discarding no candidates 2025-12-10T13:02:38,224 Collecting xicommon==1.0.8 2025-12-10T13:02:38,226 Created temporary directory: /tmp/pip-unpack-ptz76qev 2025-12-10T13:02:38,358 Downloading xicommon-1.0.8.tar.gz (74.4 MB) 2025-12-10T13:02:48,038 Added xicommon==1.0.8 from https://files.pythonhosted.org/packages/9a/c4/27af46f4348e3049b6fb433add3c18919c814d400e2ad81f4c9fdd87239a/xicommon-1.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-6g6czfzc' 2025-12-10T13:02:48,047 Created temporary directory: /tmp/pip-build-env-h0fploz1 2025-12-10T13:02:48,051 Installing build dependencies: started 2025-12-10T13:02:48,052 Running command pip subprocess to install build dependencies 2025-12-10T13:02:49,220 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-10T13:02:49,855 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-10T13:02:49,878 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-10T13:02:51,620 Collecting setuptools>=42 2025-12-10T13:02:51,707 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-10T13:02:51,981 Collecting wheel 2025-12-10T13:02:51,999 Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB) 2025-12-10T13:02:52,326 Collecting setuptools_scm 2025-12-10T13:02:52,344 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-12-10T13:02:54,307 Collecting Cython>=3.0.0 2025-12-10T13:02:54,351 Using cached cython-3.2.2-cp39-abi3-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (2.9 MB) 2025-12-10T13:02:55,440 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-10T13:02:55,448 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-10T13:02:55,454 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-10T13:02:55,461 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-10T13:02:55,468 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2025-12-10T13:02:56,117 Collecting numpy>=1.20 2025-12-10T13:02:57,456 Using cached https://www.piwheels.org/simple/numpy/numpy-2.3.5-cp311-cp311-linux_armv7l.whl (6.1 MB) 2025-12-10T13:02:57,824 Collecting packaging>=20 2025-12-10T13:02:57,840 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-10T13:03:00,828 Installing collected packages: wheel, setuptools, packaging, numpy, Cython, setuptools_scm 2025-12-10T13:03:01,071 Creating /tmp/pip-build-env-h0fploz1/overlay/local/bin 2025-12-10T13:03:01,074 changing mode of /tmp/pip-build-env-h0fploz1/overlay/local/bin/wheel to 755 2025-12-10T13:03:13,487 changing mode of /tmp/pip-build-env-h0fploz1/overlay/local/bin/f2py to 755 2025-12-10T13:03:13,489 changing mode of /tmp/pip-build-env-h0fploz1/overlay/local/bin/numpy-config to 755 2025-12-10T13:03:16,756 changing mode of /tmp/pip-build-env-h0fploz1/overlay/local/bin/cygdb to 755 2025-12-10T13:03:16,758 changing mode of /tmp/pip-build-env-h0fploz1/overlay/local/bin/cython to 755 2025-12-10T13:03:16,761 changing mode of /tmp/pip-build-env-h0fploz1/overlay/local/bin/cythonize to 755 2025-12-10T13:03:17,036 changing mode of /tmp/pip-build-env-h0fploz1/overlay/local/bin/setuptools-scm to 755 2025-12-10T13:03:17,086 Successfully installed Cython-3.2.2 numpy-2.3.5 packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 wheel-0.45.1 2025-12-10T13:03:17,556 Installing build dependencies: finished with status 'done' 2025-12-10T13:03:17,563 Getting requirements to build wheel: started 2025-12-10T13:03:17,564 Running command Getting requirements to build wheel 2025-12-10T13:03:58,544 Compiling xicommon/cython/fast_lookup.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,545 Compiling xicommon/cython/fast_unique.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,546 Compiling xicommon/cython/argsort_byte_ranges.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,547 Compiling xicommon/cython/compare_byte_ranges.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,548 Compiling xicommon/cython/copy_byte_ranges.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,548 Compiling xicommon/cython/num_lexico_permutation.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,549 Compiling xicommon/cython/unique_byte_ranges.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,550 Compiling xicommon/cython/inplace_reorder.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,550 Compiling xicommon/cython/fragmentation.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,550 Compiling xicommon/cython/fast_candidate_scores.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2025-12-10T13:03:58,551 Compiling xicommon/cython/isin_set.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/utility.pxd. 2025-12-10T13:03:58,551 Compiling xicommon/cython/db_uuid.pyx because it depends on /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/time.pxd. 2025-12-10T13:03:58,552 [ 1/12] Cythonizing xicommon/cython/argsort_byte_ranges.pyx 2025-12-10T13:03:58,552 [ 2/12] Cythonizing xicommon/cython/compare_byte_ranges.pyx 2025-12-10T13:03:58,553 [ 3/12] Cythonizing xicommon/cython/copy_byte_ranges.pyx 2025-12-10T13:03:58,553 [ 4/12] Cythonizing xicommon/cython/db_uuid.pyx 2025-12-10T13:03:58,554 [ 5/12] Cythonizing xicommon/cython/fast_unique.pyx 2025-12-10T13:03:58,554 [ 6/12] Cythonizing xicommon/cython/fragmentation.pyx 2025-12-10T13:03:58,555 [ 7/12] Cythonizing xicommon/cython/inplace_reorder.pyx 2025-12-10T13:03:58,555 [ 8/12] Cythonizing xicommon/cython/unique_byte_ranges.pyx 2025-12-10T13:03:58,556 [ 9/12] Cythonizing xicommon/cython/fast_candidate_scores.pyx 2025-12-10T13:03:58,556 [10/12] Cythonizing xicommon/cython/fast_lookup.pyx 2025-12-10T13:03:58,557 [11/12] Cythonizing xicommon/cython/isin_set.pyx 2025-12-10T13:03:58,557 [12/12] Cythonizing xicommon/cython/num_lexico_permutation.pyx 2025-12-10T13:03:58,675 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-10T13:03:58,714 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-ql3_wfgt/xicommon_136def986149491f9ca460138ee8bb60/README.md' cannot be found 2025-12-10T13:03:58,715 return '\n'.join( 2025-12-10T13:03:58,716 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-10T13:03:58,716 !! 2025-12-10T13:03:58,718 ******************************************************************************** 2025-12-10T13:03:58,718 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-10T13:03:58,719 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-10T13:03:58,720 or your builds will no longer be supported. 2025-12-10T13:03:58,721 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-10T13:03:58,722 ******************************************************************************** 2025-12-10T13:03:58,723 !! 2025-12-10T13:03:58,724 corresp(dist, value, root_dir) 2025-12-10T13:03:58,824 running egg_info 2025-12-10T13:03:58,833 writing xicommon.egg-info/PKG-INFO 2025-12-10T13:03:58,840 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-12-10T13:03:58,844 writing requirements to xicommon.egg-info/requires.txt 2025-12-10T13:03:58,846 writing top-level names to xicommon.egg-info/top_level.txt 2025-12-10T13:03:58,886 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,886 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,887 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,887 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,888 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,888 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,888 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,889 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,889 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,890 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,891 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,891 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,892 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,895 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,899 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,902 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,903 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,904 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,904 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,905 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,906 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,906 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,907 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,907 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,908 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,908 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,909 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,909 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,910 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,915 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,919 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,921 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,922 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,924 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,926 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,927 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,927 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,928 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,929 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,929 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,930 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,930 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,930 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,931 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,931 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,932 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,933 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,933 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,934 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,934 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,935 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,935 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,936 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,936 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,937 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:03:58,963 listing git files failed - pretending there aren't any 2025-12-10T13:03:58,970 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-10T13:03:58,991 adding license file 'COPYING' 2025-12-10T13:03:58,992 adding license file 'COPYING.LESSER' 2025-12-10T13:03:59,000 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-10T13:04:00,632 Getting requirements to build wheel: finished with status 'done' 2025-12-10T13:04:00,636 Created temporary directory: /tmp/pip-modern-metadata-gakkuntq 2025-12-10T13:04:00,638 Preparing metadata (pyproject.toml): started 2025-12-10T13:04:00,639 Running command Preparing metadata (pyproject.toml) 2025-12-10T13:04:02,535 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-10T13:04:02,574 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-ql3_wfgt/xicommon_136def986149491f9ca460138ee8bb60/README.md' cannot be found 2025-12-10T13:04:02,574 return '\n'.join( 2025-12-10T13:04:02,575 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-10T13:04:02,576 !! 2025-12-10T13:04:02,577 ******************************************************************************** 2025-12-10T13:04:02,577 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-10T13:04:02,579 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-10T13:04:02,579 or your builds will no longer be supported. 2025-12-10T13:04:02,580 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-10T13:04:02,581 ******************************************************************************** 2025-12-10T13:04:02,582 !! 2025-12-10T13:04:02,582 corresp(dist, value, root_dir) 2025-12-10T13:04:02,675 running dist_info 2025-12-10T13:04:02,691 creating /tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info 2025-12-10T13:04:02,692 writing /tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info/PKG-INFO 2025-12-10T13:04:02,699 writing dependency_links to /tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info/dependency_links.txt 2025-12-10T13:04:02,703 writing requirements to /tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info/requires.txt 2025-12-10T13:04:02,704 writing top-level names to /tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info/top_level.txt 2025-12-10T13:04:02,705 writing manifest file '/tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info/SOURCES.txt' 2025-12-10T13:04:02,737 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,737 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,738 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,738 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,739 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,740 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,740 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,741 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,741 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,742 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,742 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,742 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,743 dependency 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won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,746 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,746 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,747 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,747 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,748 dependency 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/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,753 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,754 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,754 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,755 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,755 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,756 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,757 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,757 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,758 dependency 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won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,761 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,761 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,762 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,762 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,762 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,763 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,763 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,764 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,764 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,765 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,766 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:02,779 listing git files failed - pretending there aren't any 2025-12-10T13:04:02,786 reading manifest file '/tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info/SOURCES.txt' 2025-12-10T13:04:02,788 adding license file 'COPYING' 2025-12-10T13:04:02,789 adding license file 'COPYING.LESSER' 2025-12-10T13:04:02,793 writing manifest file '/tmp/pip-modern-metadata-gakkuntq/xicommon.egg-info/SOURCES.txt' 2025-12-10T13:04:02,794 creating '/tmp/pip-modern-metadata-gakkuntq/xicommon-1.0.8.dist-info' 2025-12-10T13:04:03,013 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-10T13:04:03,017 Source in /tmp/pip-wheel-ql3_wfgt/xicommon_136def986149491f9ca460138ee8bb60 has version 1.0.8, which satisfies requirement xicommon==1.0.8 from https://files.pythonhosted.org/packages/9a/c4/27af46f4348e3049b6fb433add3c18919c814d400e2ad81f4c9fdd87239a/xicommon-1.0.8.tar.gz 2025-12-10T13:04:03,019 Removed xicommon==1.0.8 from https://files.pythonhosted.org/packages/9a/c4/27af46f4348e3049b6fb433add3c18919c814d400e2ad81f4c9fdd87239a/xicommon-1.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-6g6czfzc' 2025-12-10T13:04:03,025 Created temporary directory: /tmp/pip-unpack-k2w6q3d5 2025-12-10T13:04:03,025 Building wheels for collected packages: xicommon 2025-12-10T13:04:03,030 Created temporary directory: /tmp/pip-wheel-05ooe853 2025-12-10T13:04:03,031 Destination directory: /tmp/pip-wheel-05ooe853 2025-12-10T13:04:03,033 Building wheel for xicommon (pyproject.toml): started 2025-12-10T13:04:03,034 Running command Building wheel for xicommon (pyproject.toml) 2025-12-10T13:04:04,830 toml section missing PosixPath('pyproject.toml') does not contain a tool.setuptools_scm section 2025-12-10T13:04:04,869 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/config/expand.py:126: SetuptoolsWarning: File '/tmp/pip-wheel-ql3_wfgt/xicommon_136def986149491f9ca460138ee8bb60/README.md' cannot be found 2025-12-10T13:04:04,869 return '\n'.join( 2025-12-10T13:04:04,870 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-10T13:04:04,871 !! 2025-12-10T13:04:04,872 ******************************************************************************** 2025-12-10T13:04:04,872 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-10T13:04:04,873 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-10T13:04:04,874 or your builds will no longer be supported. 2025-12-10T13:04:04,875 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-10T13:04:04,876 ******************************************************************************** 2025-12-10T13:04:04,877 !! 2025-12-10T13:04:04,877 corresp(dist, value, root_dir) 2025-12-10T13:04:04,962 running bdist_wheel 2025-12-10T13:04:04,993 running build 2025-12-10T13:04:04,994 running build_py 2025-12-10T13:04:05,003 creating build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,006 copying xicommon/mock_context.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,009 copying xicommon/fragment_peptides.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,011 copying xicommon/simple_databases.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,014 copying xicommon/config.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,017 copying xicommon/const.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,020 copying xicommon/context_base.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,022 copying xicommon/spectra_reader.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,025 copying xicommon/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,027 copying xicommon/synthetic_spectra.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,030 copying xicommon/helper.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,033 copying xicommon/mass.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,035 copying xicommon/output_format.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,037 copying xicommon/modifications.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,040 copying xicommon/xi_logging.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,043 copying xicommon/dtypes.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,046 copying xicommon/cache.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,048 copying xicommon/utils.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,050 copying xicommon/fragmentation.py -> build/lib.linux-armv7l-cpython-311/xicommon 2025-12-10T13:04:05,053 running egg_info 2025-12-10T13:04:05,069 writing xicommon.egg-info/PKG-INFO 2025-12-10T13:04:05,075 writing dependency_links to xicommon.egg-info/dependency_links.txt 2025-12-10T13:04:05,079 writing requirements to xicommon.egg-info/requires.txt 2025-12-10T13:04:05,080 writing top-level names to xicommon.egg-info/top_level.txt 2025-12-10T13:04:05,093 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,094 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,094 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,094 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,095 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,096 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,096 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,097 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,097 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,098 dependency 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won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,100 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,101 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,102 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,102 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,103 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,103 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,104 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,104 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,105 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,105 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,106 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,106 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,107 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,107 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,108 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,109 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,109 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,110 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,110 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,111 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,112 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,112 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,113 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,114 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,114 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,115 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,115 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,115 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,116 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,117 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,117 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,118 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,118 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,119 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,119 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,120 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,121 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,121 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,122 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,123 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,123 dependency /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2025-12-10T13:04:05,142 listing git files failed - pretending there aren't any 2025-12-10T13:04:05,149 reading manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-10T13:04:05,170 adding license file 'COPYING' 2025-12-10T13:04:05,171 adding license file 'COPYING.LESSER' 2025-12-10T13:04:05,178 writing manifest file 'xicommon.egg-info/SOURCES.txt' 2025-12-10T13:04:05,183 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.cython' is absent from the `packages` configuration. 2025-12-10T13:04:05,184 !! 2025-12-10T13:04:05,185 ******************************************************************************** 2025-12-10T13:04:05,185 ############################ 2025-12-10T13:04:05,185 # Package would be ignored # 2025-12-10T13:04:05,186 ############################ 2025-12-10T13:04:05,186 Python recognizes 'xicommon.cython' as an importable package[^1], 2025-12-10T13:04:05,187 but it is absent from setuptools' `packages` configuration. 2025-12-10T13:04:05,188 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-10T13:04:05,188 package, please make sure that 'xicommon.cython' is explicitly added 2025-12-10T13:04:05,189 to the `packages` configuration field. 2025-12-10T13:04:05,190 Alternatively, you can also rely on setuptools' discovery methods 2025-12-10T13:04:05,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-10T13:04:05,191 instead of `find_packages(...)`/`find:`). 2025-12-10T13:04:05,193 You can read more about "package discovery" on setuptools documentation page: 2025-12-10T13:04:05,194 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-10T13:04:05,195 If you don't want 'xicommon.cython' to be distributed and are 2025-12-10T13:04:05,196 already explicitly excluding 'xicommon.cython' via 2025-12-10T13:04:05,196 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-10T13:04:05,197 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-10T13:04:05,197 combination with a more fine grained `package-data` configuration. 2025-12-10T13:04:05,199 You can read more about "package data files" on setuptools documentation page: 2025-12-10T13:04:05,200 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-10T13:04:05,202 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-10T13:04:05,202 even if it does not contain any `.py` files. 2025-12-10T13:04:05,203 On the other hand, currently there is no concept of package data 2025-12-10T13:04:05,206 directory, all directories are treated like packages. 2025-12-10T13:04:05,211 ******************************************************************************** 2025-12-10T13:04:05,216 !! 2025-12-10T13:04:05,217 check.warn(importable) 2025-12-10T13:04:05,218 /tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'xicommon.filters' is absent from the `packages` configuration. 2025-12-10T13:04:05,218 !! 2025-12-10T13:04:05,219 ******************************************************************************** 2025-12-10T13:04:05,220 ############################ 2025-12-10T13:04:05,221 # Package would be ignored # 2025-12-10T13:04:05,221 ############################ 2025-12-10T13:04:05,222 Python recognizes 'xicommon.filters' as an importable package[^1], 2025-12-10T13:04:05,222 but it is absent from setuptools' `packages` configuration. 2025-12-10T13:04:05,223 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-10T13:04:05,223 package, please make sure that 'xicommon.filters' is explicitly added 2025-12-10T13:04:05,224 to the `packages` configuration field. 2025-12-10T13:04:05,225 Alternatively, you can also rely on setuptools' discovery methods 2025-12-10T13:04:05,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-10T13:04:05,226 instead of `find_packages(...)`/`find:`). 2025-12-10T13:04:05,227 You can read more about "package discovery" on setuptools documentation page: 2025-12-10T13:04:05,228 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-10T13:04:05,229 If you don't want 'xicommon.filters' to be distributed and are 2025-12-10T13:04:05,230 already explicitly excluding 'xicommon.filters' via 2025-12-10T13:04:05,231 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-10T13:04:05,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-10T13:04:05,232 combination with a more fine grained `package-data` configuration. 2025-12-10T13:04:05,234 You can read more about "package data files" on setuptools documentation page: 2025-12-10T13:04:05,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-10T13:04:05,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-10T13:04:05,239 even if it does not contain any `.py` files. 2025-12-10T13:04:05,240 On the other hand, currently there is no concept of package data 2025-12-10T13:04:05,241 directory, all directories are treated like packages. 2025-12-10T13:04:05,241 ******************************************************************************** 2025-12-10T13:04:05,243 !! 2025-12-10T13:04:05,244 check.warn(importable) 2025-12-10T13:04:05,245 creating build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,250 copying xicommon/cython/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,251 copying xicommon/cython/argsort_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,252 copying xicommon/cython/argsort_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,252 copying xicommon/cython/compare_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,253 copying xicommon/cython/compare_byte_ranges.pxd -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,255 copying xicommon/cython/compare_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,257 copying xicommon/cython/copy_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,280 copying xicommon/cython/copy_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,283 copying xicommon/cython/db_uuid.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,299 copying xicommon/cython/db_uuid.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,301 copying xicommon/cython/fast_candidate_scores.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,360 copying xicommon/cython/fast_candidate_scores.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,362 copying xicommon/cython/fast_lookup.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,424 copying xicommon/cython/fast_lookup.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,427 copying xicommon/cython/fast_unique.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,486 copying xicommon/cython/fast_unique.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,489 copying xicommon/cython/fragmentation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,601 copying xicommon/cython/fragmentation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,604 copying xicommon/cython/fragmentation.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,606 copying xicommon/cython/inplace_reorder.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,649 copying xicommon/cython/inplace_reorder.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,651 copying xicommon/cython/isin_set.cpp -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,727 copying xicommon/cython/isin_set.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,730 copying xicommon/cython/isin_set.pyxbld -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,732 copying xicommon/cython/num_lexico_permutation.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,784 copying xicommon/cython/num_lexico_permutation.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,786 copying xicommon/cython/unique_byte_ranges.c -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,840 copying xicommon/cython/unique_byte_ranges.pyx -> build/lib.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,842 creating build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,843 copying xicommon/filters/__init__.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,845 copying xicommon/filters/base_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,847 copying xicommon/filters/charge_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,849 copying xicommon/filters/denoise_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,852 copying xicommon/filters/isotope_detector.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,855 copying xicommon/filters/isotope_reducer.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,857 copying xicommon/filters/loss_cluster_filter.py -> build/lib.linux-armv7l-cpython-311/xicommon/filters 2025-12-10T13:04:05,860 running build_ext 2025-12-10T13:04:05,867 building 'xicommon.cython.fast_lookup' extension 2025-12-10T13:04:05,868 creating build/temp.linux-armv7l-cpython-311/xicommon/cython 2025-12-10T13:04:05,870 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_lookup.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o 2025-12-10T13:04:24,253 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:04:24,462 building 'xicommon.cython.fast_unique' extension 2025-12-10T13:04:24,463 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_unique.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o 2025-12-10T13:04:43,228 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_unique.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:04:43,420 building 'xicommon.cython.argsort_byte_ranges' extension 2025-12-10T13:04:43,421 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/argsort_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o 2025-12-10T13:04:59,697 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:04:59,829 building 'xicommon.cython.compare_byte_ranges' extension 2025-12-10T13:04:59,830 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/compare_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o 2025-12-10T13:05:16,768 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:05:16,897 building 'xicommon.cython.copy_byte_ranges' extension 2025-12-10T13:05:16,898 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/copy_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o 2025-12-10T13:05:33,185 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:05:33,343 building 'xicommon.cython.num_lexico_permutation' extension 2025-12-10T13:05:33,344 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/num_lexico_permutation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o 2025-12-10T13:05:49,809 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:05:49,942 building 'xicommon.cython.unique_byte_ranges' extension 2025-12-10T13:05:49,942 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/unique_byte_ranges.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o 2025-12-10T13:06:07,318 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:06:07,450 building 'xicommon.cython.inplace_reorder' extension 2025-12-10T13:06:07,451 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/inplace_reorder.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o 2025-12-10T13:06:24,602 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:06:24,732 building 'xicommon.cython.fragmentation' extension 2025-12-10T13:06:24,732 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fragmentation.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o 2025-12-10T13:06:48,348 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fragmentation.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:06:48,585 building 'xicommon.cython.fast_candidate_scores' extension 2025-12-10T13:06:48,586 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/fast_candidate_scores.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o 2025-12-10T13:07:05,340 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:07:05,471 building 'xicommon.cython.isin_set' extension 2025-12-10T13:07:05,472 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/isin_set.cpp -o build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -std=c++11 2025-12-10T13:07:42,492 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/xicommon/cython/isin_set.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:07:42,864 building 'xicommon.cython.db_uuid' extension 2025-12-10T13:07:42,865 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -I/tmp/pip-build-env-h0fploz1/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c xicommon/cython/db_uuid.c -o build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o 2025-12-10T13:07:46,140 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/xicommon/cython/db_uuid.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so 2025-12-10T13:07:46,267 installing to build/bdist.linux-armv7l/wheel 2025-12-10T13:07:46,267 running install 2025-12-10T13:07:46,293 running install_lib 2025-12-10T13:07:46,305 creating build/bdist.linux-armv7l/wheel 2025-12-10T13:07:46,308 creating build/bdist.linux-armv7l/wheel/xicommon 2025-12-10T13:07:46,310 copying build/lib.linux-armv7l-cpython-311/xicommon/mock_context.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,313 copying build/lib.linux-armv7l-cpython-311/xicommon/fragment_peptides.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,316 copying build/lib.linux-armv7l-cpython-311/xicommon/simple_databases.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,318 copying build/lib.linux-armv7l-cpython-311/xicommon/config.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,322 copying build/lib.linux-armv7l-cpython-311/xicommon/const.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,325 creating build/bdist.linux-armv7l/wheel/xicommon/cython 2025-12-10T13:07:46,327 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pxd -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,329 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,332 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,337 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,339 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,368 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,393 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,415 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,417 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,439 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,441 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,458 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,472 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,474 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,489 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,510 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,512 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,527 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,550 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/num_lexico_permutation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,570 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,584 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,586 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,589 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/inplace_reorder.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,591 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,616 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,619 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpp -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,644 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/unique_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,670 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,686 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,689 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,706 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,720 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,769 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,791 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fast_candidate_scores.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,794 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/copy_byte_ranges.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,823 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,844 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,847 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.c -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,857 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/isin_set.pyxbld -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,859 copying build/lib.linux-armv7l-cpython-311/xicommon/cython/db_uuid.pyx -> build/bdist.linux-armv7l/wheel/./xicommon/cython 2025-12-10T13:07:46,861 copying build/lib.linux-armv7l-cpython-311/xicommon/context_base.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,863 copying build/lib.linux-armv7l-cpython-311/xicommon/spectra_reader.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,866 copying build/lib.linux-armv7l-cpython-311/xicommon/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,868 copying build/lib.linux-armv7l-cpython-311/xicommon/synthetic_spectra.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,870 copying build/lib.linux-armv7l-cpython-311/xicommon/helper.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,873 copying build/lib.linux-armv7l-cpython-311/xicommon/mass.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,875 copying build/lib.linux-armv7l-cpython-311/xicommon/output_format.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,877 copying build/lib.linux-armv7l-cpython-311/xicommon/modifications.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,880 copying build/lib.linux-armv7l-cpython-311/xicommon/xi_logging.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,882 copying build/lib.linux-armv7l-cpython-311/xicommon/dtypes.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,884 copying build/lib.linux-armv7l-cpython-311/xicommon/cache.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,886 copying build/lib.linux-armv7l-cpython-311/xicommon/utils.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,889 creating build/bdist.linux-armv7l/wheel/xicommon/filters 2025-12-10T13:07:46,890 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/denoise_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-10T13:07:46,893 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_detector.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-10T13:07:46,895 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-10T13:07:46,897 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/base_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-10T13:07:46,899 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/charge_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-10T13:07:46,901 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/isotope_reducer.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-10T13:07:46,903 copying build/lib.linux-armv7l-cpython-311/xicommon/filters/loss_cluster_filter.py -> build/bdist.linux-armv7l/wheel/./xicommon/filters 2025-12-10T13:07:46,905 copying build/lib.linux-armv7l-cpython-311/xicommon/fragmentation.py -> build/bdist.linux-armv7l/wheel/./xicommon 2025-12-10T13:07:46,907 running install_egg_info 2025-12-10T13:07:46,915 Copying xicommon.egg-info to build/bdist.linux-armv7l/wheel/./xicommon-1.0.8-py3.11.egg-info 2025-12-10T13:07:46,926 running install_scripts 2025-12-10T13:07:46,973 creating build/bdist.linux-armv7l/wheel/xicommon-1.0.8.dist-info/WHEEL 2025-12-10T13:07:46,977 creating '/tmp/pip-wheel-05ooe853/.tmp-a2vwko9p/xicommon-1.0.8-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-10T13:07:46,979 adding 'xicommon/__init__.py' 2025-12-10T13:07:46,981 adding 'xicommon/cache.py' 2025-12-10T13:07:46,986 adding 'xicommon/config.py' 2025-12-10T13:07:46,988 adding 'xicommon/const.py' 2025-12-10T13:07:46,989 adding 'xicommon/context_base.py' 2025-12-10T13:07:46,991 adding 'xicommon/dtypes.py' 2025-12-10T13:07:46,993 adding 'xicommon/fragment_peptides.py' 2025-12-10T13:07:46,997 adding 'xicommon/fragmentation.py' 2025-12-10T13:07:46,998 adding 'xicommon/helper.py' 2025-12-10T13:07:47,000 adding 'xicommon/mass.py' 2025-12-10T13:07:47,001 adding 'xicommon/mock_context.py' 2025-12-10T13:07:47,004 adding 'xicommon/modifications.py' 2025-12-10T13:07:47,006 adding 'xicommon/output_format.py' 2025-12-10T13:07:47,007 adding 'xicommon/simple_databases.py' 2025-12-10T13:07:47,011 adding 'xicommon/spectra_reader.py' 2025-12-10T13:07:47,013 adding 'xicommon/synthetic_spectra.py' 2025-12-10T13:07:47,015 adding 'xicommon/utils.py' 2025-12-10T13:07:47,016 adding 'xicommon/xi_logging.py' 2025-12-10T13:07:47,019 adding 'xicommon/cython/__init__.py' 2025-12-10T13:07:47,110 adding 'xicommon/cython/argsort_byte_ranges.c' 2025-12-10T13:07:47,298 adding 'xicommon/cython/argsort_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:47,305 adding 'xicommon/cython/argsort_byte_ranges.pyx' 2025-12-10T13:07:47,398 adding 'xicommon/cython/compare_byte_ranges.c' 2025-12-10T13:07:47,593 adding 'xicommon/cython/compare_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:47,599 adding 'xicommon/cython/compare_byte_ranges.pxd' 2025-12-10T13:07:47,600 adding 'xicommon/cython/compare_byte_ranges.pyx' 2025-12-10T13:07:47,691 adding 'xicommon/cython/copy_byte_ranges.c' 2025-12-10T13:07:47,878 adding 'xicommon/cython/copy_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:47,885 adding 'xicommon/cython/copy_byte_ranges.pyx' 2025-12-10T13:07:47,914 adding 'xicommon/cython/db_uuid.c' 2025-12-10T13:07:47,956 adding 'xicommon/cython/db_uuid.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:47,958 adding 'xicommon/cython/db_uuid.pyx' 2025-12-10T13:07:48,049 adding 'xicommon/cython/fast_candidate_scores.c' 2025-12-10T13:07:48,241 adding 'xicommon/cython/fast_candidate_scores.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:48,247 adding 'xicommon/cython/fast_candidate_scores.pyx' 2025-12-10T13:07:48,343 adding 'xicommon/cython/fast_lookup.c' 2025-12-10T13:07:48,545 adding 'xicommon/cython/fast_lookup.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:48,552 adding 'xicommon/cython/fast_lookup.pyx' 2025-12-10T13:07:48,648 adding 'xicommon/cython/fast_unique.c' 2025-12-10T13:07:48,854 adding 'xicommon/cython/fast_unique.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:48,862 adding 'xicommon/cython/fast_unique.pyx' 2025-12-10T13:07:48,971 adding 'xicommon/cython/fragmentation.c' 2025-12-10T13:07:49,238 adding 'xicommon/cython/fragmentation.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:49,247 adding 'xicommon/cython/fragmentation.pyx' 2025-12-10T13:07:49,249 adding 'xicommon/cython/fragmentation.pyxbld' 2025-12-10T13:07:49,341 adding 'xicommon/cython/inplace_reorder.c' 2025-12-10T13:07:49,537 adding 'xicommon/cython/inplace_reorder.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:49,543 adding 'xicommon/cython/inplace_reorder.pyx' 2025-12-10T13:07:49,652 adding 'xicommon/cython/isin_set.cpp' 2025-12-10T13:07:50,063 adding 'xicommon/cython/isin_set.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:50,081 adding 'xicommon/cython/isin_set.pyx' 2025-12-10T13:07:50,082 adding 'xicommon/cython/isin_set.pyxbld' 2025-12-10T13:07:50,173 adding 'xicommon/cython/num_lexico_permutation.c' 2025-12-10T13:07:50,361 adding 'xicommon/cython/num_lexico_permutation.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:50,368 adding 'xicommon/cython/num_lexico_permutation.pyx' 2025-12-10T13:07:50,461 adding 'xicommon/cython/unique_byte_ranges.c' 2025-12-10T13:07:50,657 adding 'xicommon/cython/unique_byte_ranges.cpython-311-arm-linux-gnueabihf.so' 2025-12-10T13:07:50,663 adding 'xicommon/cython/unique_byte_ranges.pyx' 2025-12-10T13:07:50,665 adding 'xicommon/filters/__init__.py' 2025-12-10T13:07:50,667 adding 'xicommon/filters/base_filter.py' 2025-12-10T13:07:50,668 adding 'xicommon/filters/charge_reducer.py' 2025-12-10T13:07:50,670 adding 'xicommon/filters/denoise_filter.py' 2025-12-10T13:07:50,672 adding 'xicommon/filters/isotope_detector.py' 2025-12-10T13:07:50,674 adding 'xicommon/filters/isotope_reducer.py' 2025-12-10T13:07:50,675 adding 'xicommon/filters/loss_cluster_filter.py' 2025-12-10T13:07:50,682 adding 'xicommon-1.0.8.dist-info/licenses/COPYING' 2025-12-10T13:07:50,684 adding 'xicommon-1.0.8.dist-info/licenses/COPYING.LESSER' 2025-12-10T13:07:50,685 adding 'xicommon-1.0.8.dist-info/METADATA' 2025-12-10T13:07:50,686 adding 'xicommon-1.0.8.dist-info/WHEEL' 2025-12-10T13:07:50,687 adding 'xicommon-1.0.8.dist-info/top_level.txt' 2025-12-10T13:07:50,688 adding 'xicommon-1.0.8.dist-info/RECORD' 2025-12-10T13:07:50,755 removing build/bdist.linux-armv7l/wheel 2025-12-10T13:07:51,050 Building wheel for xicommon (pyproject.toml): finished with status 'done' 2025-12-10T13:07:52,310 Created wheel for xicommon: filename=xicommon-1.0.8-cp311-cp311-linux_armv7l.whl size=6634786 sha256=17cc96097bde9e38b533e0e5112c8747e099890a5395d948d1e0a9024234e231 2025-12-10T13:07:52,311 Stored in directory: /tmp/pip-ephem-wheel-cache-43i503wa/wheels/b5/9e/78/4a73d3c6c4f779ffd7309eade821e52fc31e049f6ad7c6a2df 2025-12-10T13:07:52,327 Successfully built xicommon 2025-12-10T13:07:52,504 Removed build tracker: '/tmp/pip-build-tracker-6g6czfzc'