2025-12-11T23:57:10,423 Created temporary directory: /tmp/pip-ephem-wheel-cache-v_yp7k6p
2025-12-11T23:57:10,425 Created temporary directory: /tmp/pip-build-tracker-qedgx94y
2025-12-11T23:57:10,426 Initialized build tracking at /tmp/pip-build-tracker-qedgx94y
2025-12-11T23:57:10,426 Created build tracker: /tmp/pip-build-tracker-qedgx94y
2025-12-11T23:57:10,427 Entered build tracker: /tmp/pip-build-tracker-qedgx94y
2025-12-11T23:57:10,428 Created temporary directory: /tmp/pip-wheel-pl3z_qaf
2025-12-11T23:57:10,431 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-11T23:57:10,433 Created temporary directory: /tmp/pip-ephem-wheel-cache-mmd8jmxo
2025-12-11T23:57:10,455 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-11T23:57:10,459 2 location(s) to search for versions of phaselab:
2025-12-11T23:57:10,459 * https://pypi.org/simple/phaselab/
2025-12-11T23:57:10,459 * https://www.piwheels.org/simple/phaselab/
2025-12-11T23:57:10,460 Fetching project page and analyzing links: https://pypi.org/simple/phaselab/
2025-12-11T23:57:10,461 Getting page https://pypi.org/simple/phaselab/
2025-12-11T23:57:10,462 Found index url https://pypi.org/simple
2025-12-11T23:57:10,678 Fetched page https://pypi.org/simple/phaselab/ as application/vnd.pypi.simple.v1+json
2025-12-11T23:57:10,680   Skipping link: No binaries permitted for phaselab: https://files.pythonhosted.org/packages/b6/e2/33bb7425f0acf376512de7b1c27938eae72950196641c388de6eae25cfe1/phaselab-0.1.0-py3-none-any.whl (from https://pypi.org/simple/phaselab/) (requires-python:>=3.9)
2025-12-11T23:57:10,681   Found link https://files.pythonhosted.org/packages/74/38/29a1dde57365217ae417e73c0ad7b6f6bc476f73e1d552cda82d03577f5e/phaselab-0.1.0.tar.gz (from https://pypi.org/simple/phaselab/) (requires-python:>=3.9), version: 0.1.0
2025-12-11T23:57:10,682   Skipping link: No binaries permitted for phaselab: https://files.pythonhosted.org/packages/32/43/303ad89d407e0db6cdf9196a4c09c6bb4b552e490a2518d359c56859335a/phaselab-0.4.0-py3-none-any.whl (from https://pypi.org/simple/phaselab/) (requires-python:>=3.9)
2025-12-11T23:57:10,683   Found link https://files.pythonhosted.org/packages/82/d8/160cd6c66becf17911ce65f77f284742cf39198b2364ec2f8b2e49401eb7/phaselab-0.4.0.tar.gz (from https://pypi.org/simple/phaselab/) (requires-python:>=3.9), version: 0.4.0
2025-12-11T23:57:10,684 Fetching project page and analyzing links: https://www.piwheels.org/simple/phaselab/
2025-12-11T23:57:10,685 Getting page https://www.piwheels.org/simple/phaselab/
2025-12-11T23:57:10,686 Found index url https://www.piwheels.org/simple
2025-12-11T23:57:10,846 Fetched page https://www.piwheels.org/simple/phaselab/ as text/html
2025-12-11T23:57:10,847   Skipping link: No binaries permitted for phaselab: https://www.piwheels.org/simple/phaselab/phaselab-0.1.0-py3-none-any.whl#sha256=975b7bb03c3ec5dc0db8728648c0d64e7fcd21cf012765eaeb03b90eb5df8783 (from https://www.piwheels.org/simple/phaselab/) (requires-python:>=3.9)
2025-12-11T23:57:10,848 Skipping link: not a file: https://www.piwheels.org/simple/phaselab/
2025-12-11T23:57:10,849 Skipping link: not a file: https://pypi.org/simple/phaselab/
2025-12-11T23:57:10,868 Given no hashes to check 1 links for project 'phaselab': discarding no candidates
2025-12-11T23:57:10,887 Collecting phaselab==0.4.0
2025-12-11T23:57:10,889   Created temporary directory: /tmp/pip-unpack-ufi6cxgg
2025-12-11T23:57:11,103   Downloading phaselab-0.4.0.tar.gz (86 kB)
2025-12-11T23:57:11,295   Added phaselab==0.4.0 from https://files.pythonhosted.org/packages/82/d8/160cd6c66becf17911ce65f77f284742cf39198b2364ec2f8b2e49401eb7/phaselab-0.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-qedgx94y'
2025-12-11T23:57:11,302   Created temporary directory: /tmp/pip-build-env-cjmov05q
2025-12-11T23:57:11,307   Installing build dependencies: started
2025-12-11T23:57:11,308   Running command pip subprocess to install build dependencies
2025-12-11T23:57:12,446   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-12-11T23:57:13,074   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-11T23:57:13,097   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-11T23:57:14,845   Collecting setuptools>=61.0
2025-12-11T23:57:14,931     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-12-11T23:57:15,209   Collecting wheel
2025-12-11T23:57:15,226     Using cached https://www.piwheels.org/simple/wheel/wheel-0.45.1-py3-none-any.whl (72 kB)
2025-12-11T23:57:18,117   Installing collected packages: wheel, setuptools
2025-12-11T23:57:18,361     Creating /tmp/pip-build-env-cjmov05q/overlay/local/bin
2025-12-11T23:57:18,363     changing mode of /tmp/pip-build-env-cjmov05q/overlay/local/bin/wheel to 755
2025-12-11T23:57:22,163   Successfully installed setuptools-80.9.0 wheel-0.45.1
2025-12-11T23:57:22,441   Installing build dependencies: finished with status 'done'
2025-12-11T23:57:22,447   Getting requirements to build wheel: started
2025-12-11T23:57:22,448   Running command Getting requirements to build wheel
2025-12-11T23:57:23,109   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-12-11T23:57:23,110   !!

2025-12-11T23:57:23,111           ********************************************************************************
2025-12-11T23:57:23,112           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-12-11T23:57:23,113           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-12-11T23:57:23,113           or your builds will no longer be supported.

2025-12-11T23:57:23,115           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:23,115           ********************************************************************************

2025-12-11T23:57:23,117   !!
2025-12-11T23:57:23,117     corresp(dist, value, root_dir)
2025-12-11T23:57:23,200   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-11T23:57:23,201   !!

2025-12-11T23:57:23,202           ********************************************************************************
2025-12-11T23:57:23,203           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-11T23:57:23,204           License :: OSI Approved :: MIT License

2025-12-11T23:57:23,205           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:23,206           ********************************************************************************

2025-12-11T23:57:23,207   !!
2025-12-11T23:57:23,208     dist._finalize_license_expression()
2025-12-11T23:57:23,208   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-11T23:57:23,209   !!

2025-12-11T23:57:23,211           ********************************************************************************
2025-12-11T23:57:23,211           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-11T23:57:23,212           License :: OSI Approved :: MIT License

2025-12-11T23:57:23,213           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:23,214           ********************************************************************************

2025-12-11T23:57:23,214   !!
2025-12-11T23:57:23,215     self._finalize_license_expression()
2025-12-11T23:57:23,215   running egg_info
2025-12-11T23:57:23,222   writing src/phaselab.egg-info/PKG-INFO
2025-12-11T23:57:23,232   writing dependency_links to src/phaselab.egg-info/dependency_links.txt
2025-12-11T23:57:23,233   writing entry points to src/phaselab.egg-info/entry_points.txt
2025-12-11T23:57:23,239   writing requirements to src/phaselab.egg-info/requires.txt
2025-12-11T23:57:23,240   writing top-level names to src/phaselab.egg-info/top_level.txt
2025-12-11T23:57:23,273   reading manifest file 'src/phaselab.egg-info/SOURCES.txt'
2025-12-11T23:57:23,277   adding license file 'LICENSE'
2025-12-11T23:57:23,282   writing manifest file 'src/phaselab.egg-info/SOURCES.txt'
2025-12-11T23:57:23,381   Getting requirements to build wheel: finished with status 'done'
2025-12-11T23:57:23,385   Created temporary directory: /tmp/pip-modern-metadata-4lfirwq0
2025-12-11T23:57:23,388   Preparing metadata (pyproject.toml): started
2025-12-11T23:57:23,389   Running command Preparing metadata (pyproject.toml)
2025-12-11T23:57:23,953   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-12-11T23:57:23,953   !!

2025-12-11T23:57:23,955           ********************************************************************************
2025-12-11T23:57:23,955           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-12-11T23:57:23,956           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-12-11T23:57:23,957           or your builds will no longer be supported.

2025-12-11T23:57:23,958           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:23,959           ********************************************************************************

2025-12-11T23:57:23,960   !!
2025-12-11T23:57:23,961     corresp(dist, value, root_dir)
2025-12-11T23:57:24,041   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-11T23:57:24,041   !!

2025-12-11T23:57:24,043           ********************************************************************************
2025-12-11T23:57:24,043           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-11T23:57:24,044           License :: OSI Approved :: MIT License

2025-12-11T23:57:24,046           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:24,046           ********************************************************************************

2025-12-11T23:57:24,048   !!
2025-12-11T23:57:24,048     dist._finalize_license_expression()
2025-12-11T23:57:24,049   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-11T23:57:24,049   !!

2025-12-11T23:57:24,051           ********************************************************************************
2025-12-11T23:57:24,051           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-11T23:57:24,053           License :: OSI Approved :: MIT License

2025-12-11T23:57:24,054           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:24,055           ********************************************************************************

2025-12-11T23:57:24,056   !!
2025-12-11T23:57:24,056     self._finalize_license_expression()
2025-12-11T23:57:24,057   running dist_info
2025-12-11T23:57:24,066   creating /tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info
2025-12-11T23:57:24,067   writing /tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/PKG-INFO
2025-12-11T23:57:24,077   writing dependency_links to /tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/dependency_links.txt
2025-12-11T23:57:24,079   writing entry points to /tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/entry_points.txt
2025-12-11T23:57:24,084   writing requirements to /tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/requires.txt
2025-12-11T23:57:24,085   writing top-level names to /tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/top_level.txt
2025-12-11T23:57:24,087   writing manifest file '/tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/SOURCES.txt'
2025-12-11T23:57:24,117   reading manifest file '/tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/SOURCES.txt'
2025-12-11T23:57:24,119   adding license file 'LICENSE'
2025-12-11T23:57:24,123   writing manifest file '/tmp/pip-modern-metadata-4lfirwq0/phaselab.egg-info/SOURCES.txt'
2025-12-11T23:57:24,124   creating '/tmp/pip-modern-metadata-4lfirwq0/phaselab-0.4.0.dist-info'
2025-12-11T23:57:24,253   Preparing metadata (pyproject.toml): finished with status 'done'
2025-12-11T23:57:24,258   Source in /tmp/pip-wheel-pl3z_qaf/phaselab_46b4a854cb274f6191135e32cb617615 has version 0.4.0, which satisfies requirement phaselab==0.4.0 from https://files.pythonhosted.org/packages/82/d8/160cd6c66becf17911ce65f77f284742cf39198b2364ec2f8b2e49401eb7/phaselab-0.4.0.tar.gz
2025-12-11T23:57:24,259   Removed phaselab==0.4.0 from https://files.pythonhosted.org/packages/82/d8/160cd6c66becf17911ce65f77f284742cf39198b2364ec2f8b2e49401eb7/phaselab-0.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-qedgx94y'
2025-12-11T23:57:24,267 Created temporary directory: /tmp/pip-unpack-m50qozu8
2025-12-11T23:57:24,268 Building wheels for collected packages: phaselab
2025-12-11T23:57:24,273   Created temporary directory: /tmp/pip-wheel-pvzc2u4i
2025-12-11T23:57:24,273   Destination directory: /tmp/pip-wheel-pvzc2u4i
2025-12-11T23:57:24,276   Building wheel for phaselab (pyproject.toml): started
2025-12-11T23:57:24,277   Running command Building wheel for phaselab (pyproject.toml)
2025-12-11T23:57:24,830   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
2025-12-11T23:57:24,830   !!

2025-12-11T23:57:24,831           ********************************************************************************
2025-12-11T23:57:24,832           Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).

2025-12-11T23:57:24,833           By 2026-Feb-18, you need to update your project and remove deprecated calls
2025-12-11T23:57:24,834           or your builds will no longer be supported.

2025-12-11T23:57:24,835           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:24,836           ********************************************************************************

2025-12-11T23:57:24,837   !!
2025-12-11T23:57:24,838     corresp(dist, value, root_dir)
2025-12-11T23:57:24,908   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-11T23:57:24,909   !!

2025-12-11T23:57:24,910           ********************************************************************************
2025-12-11T23:57:24,911           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-11T23:57:24,913           License :: OSI Approved :: MIT License

2025-12-11T23:57:24,914           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:24,914           ********************************************************************************

2025-12-11T23:57:24,915   !!
2025-12-11T23:57:24,916     dist._finalize_license_expression()
2025-12-11T23:57:24,917   /tmp/pip-build-env-cjmov05q/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2025-12-11T23:57:24,917   !!

2025-12-11T23:57:24,918           ********************************************************************************
2025-12-11T23:57:24,919           Please consider removing the following classifiers in favor of a SPDX license expression:

2025-12-11T23:57:24,920           License :: OSI Approved :: MIT License

2025-12-11T23:57:24,921           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2025-12-11T23:57:24,921           ********************************************************************************

2025-12-11T23:57:24,922   !!
2025-12-11T23:57:24,923     self._finalize_license_expression()
2025-12-11T23:57:24,923   running bdist_wheel
2025-12-11T23:57:24,937   running build
2025-12-11T23:57:24,938   running build_py
2025-12-11T23:57:24,944   creating build/lib/phaselab
2025-12-11T23:57:24,947   copying src/phaselab/__init__.py -> build/lib/phaselab
2025-12-11T23:57:24,950   creating build/lib/phaselab/protein
2025-12-11T23:57:24,951   copying src/phaselab/protein/folding.py -> build/lib/phaselab/protein
2025-12-11T23:57:24,953   copying src/phaselab/protein/dynamics.py -> build/lib/phaselab/protein
2025-12-11T23:57:24,956   copying src/phaselab/protein/binding.py -> build/lib/phaselab/protein
2025-12-11T23:57:24,958   copying src/phaselab/protein/__init__.py -> build/lib/phaselab/protein
2025-12-11T23:57:24,961   creating build/lib/phaselab/chromatin
2025-12-11T23:57:24,962   copying src/phaselab/chromatin/integration.py -> build/lib/phaselab/chromatin
2025-12-11T23:57:24,964   copying src/phaselab/chromatin/accessibility.py -> build/lib/phaselab/chromatin
2025-12-11T23:57:24,967   copying src/phaselab/chromatin/__init__.py -> build/lib/phaselab/chromatin
2025-12-11T23:57:24,969   copying src/phaselab/chromatin/tissue_models.py -> build/lib/phaselab/chromatin
2025-12-11T23:57:24,972   creating build/lib/phaselab/therapy
2025-12-11T23:57:24,973   copying src/phaselab/therapy/__init__.py -> build/lib/phaselab/therapy
2025-12-11T23:57:24,975   copying src/phaselab/therapy/efficacy.py -> build/lib/phaselab/therapy
2025-12-11T23:57:24,978   copying src/phaselab/therapy/dosage.py -> build/lib/phaselab/therapy
2025-12-11T23:57:24,981   creating build/lib/phaselab/io
2025-12-11T23:57:24,982   copying src/phaselab/io/__init__.py -> build/lib/phaselab/io
2025-12-11T23:57:24,985   copying src/phaselab/io/export.py -> build/lib/phaselab/io
2025-12-11T23:57:24,987   creating build/lib/phaselab/drug
2025-12-11T23:57:24,988   copying src/phaselab/drug/pharmacokinetics.py -> build/lib/phaselab/drug
2025-12-11T23:57:24,991   copying src/phaselab/drug/variability.py -> build/lib/phaselab/drug
2025-12-11T23:57:24,993   copying src/phaselab/drug/chronotherapy.py -> build/lib/phaselab/drug
2025-12-11T23:57:24,996   copying src/phaselab/drug/__init__.py -> build/lib/phaselab/drug
2025-12-11T23:57:24,998   creating build/lib/phaselab/targets
2025-12-11T23:57:25,000   copying src/phaselab/targets/config.py -> build/lib/phaselab/targets
2025-12-11T23:57:25,002   copying src/phaselab/targets/__init__.py -> build/lib/phaselab/targets
2025-12-11T23:57:25,005   creating build/lib/phaselab/core
2025-12-11T23:57:25,006   copying src/phaselab/core/hamiltonians.py -> build/lib/phaselab/core
2025-12-11T23:57:25,009   copying src/phaselab/core/__init__.py -> build/lib/phaselab/core
2025-12-11T23:57:25,011   copying src/phaselab/core/constants.py -> build/lib/phaselab/core
2025-12-11T23:57:25,013   copying src/phaselab/core/coherence.py -> build/lib/phaselab/core
2025-12-11T23:57:25,016   creating build/lib/phaselab/crispr
2025-12-11T23:57:25,017   copying src/phaselab/crispr/interference.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,019   copying src/phaselab/crispr/base_editing.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,022   copying src/phaselab/crispr/prime_editing.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,024   copying src/phaselab/crispr/__init__.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,026   copying src/phaselab/crispr/knockout.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,029   copying src/phaselab/crispr/pam_scan.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,031   copying src/phaselab/crispr/editors.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,033   copying src/phaselab/crispr/pipeline.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,036   copying src/phaselab/crispr/scoring.py -> build/lib/phaselab/crispr
2025-12-11T23:57:25,038   creating build/lib/phaselab/circadian
2025-12-11T23:57:25,039   copying src/phaselab/circadian/sms_model.py -> build/lib/phaselab/circadian
2025-12-11T23:57:25,042   copying src/phaselab/circadian/kuramoto.py -> build/lib/phaselab/circadian
2025-12-11T23:57:25,044   copying src/phaselab/circadian/__init__.py -> build/lib/phaselab/circadian
2025-12-11T23:57:25,046   copying src/phaselab/circadian/multi_tissue.py -> build/lib/phaselab/circadian
2025-12-11T23:57:25,048   running egg_info
2025-12-11T23:57:25,059   writing src/phaselab.egg-info/PKG-INFO
2025-12-11T23:57:25,068   writing dependency_links to src/phaselab.egg-info/dependency_links.txt
2025-12-11T23:57:25,070   writing entry points to src/phaselab.egg-info/entry_points.txt
2025-12-11T23:57:25,075   writing requirements to src/phaselab.egg-info/requires.txt
2025-12-11T23:57:25,076   writing top-level names to src/phaselab.egg-info/top_level.txt
2025-12-11T23:57:25,094   reading manifest file 'src/phaselab.egg-info/SOURCES.txt'
2025-12-11T23:57:25,099   adding license file 'LICENSE'
2025-12-11T23:57:25,103   writing manifest file 'src/phaselab.egg-info/SOURCES.txt'
2025-12-11T23:57:25,111   copying src/phaselab/targets/SCN2A.yaml -> build/lib/phaselab/targets
2025-12-11T23:57:25,113   copying src/phaselab/targets/RAI1.yaml -> build/lib/phaselab/targets
2025-12-11T23:57:25,130   installing to build/bdist.linux-armv7l/wheel
2025-12-11T23:57:25,131   running install
2025-12-11T23:57:25,154   running install_lib
2025-12-11T23:57:25,160   creating build/bdist.linux-armv7l/wheel
2025-12-11T23:57:25,162   creating build/bdist.linux-armv7l/wheel/phaselab
2025-12-11T23:57:25,164   creating build/bdist.linux-armv7l/wheel/phaselab/protein
2025-12-11T23:57:25,165   copying build/lib/phaselab/protein/folding.py -> build/bdist.linux-armv7l/wheel/./phaselab/protein
2025-12-11T23:57:25,168   copying build/lib/phaselab/protein/dynamics.py -> build/bdist.linux-armv7l/wheel/./phaselab/protein
2025-12-11T23:57:25,170   copying build/lib/phaselab/protein/binding.py -> build/bdist.linux-armv7l/wheel/./phaselab/protein
2025-12-11T23:57:25,172   copying build/lib/phaselab/protein/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/protein
2025-12-11T23:57:25,175   creating build/bdist.linux-armv7l/wheel/phaselab/chromatin
2025-12-11T23:57:25,176   copying build/lib/phaselab/chromatin/integration.py -> build/bdist.linux-armv7l/wheel/./phaselab/chromatin
2025-12-11T23:57:25,179   copying build/lib/phaselab/chromatin/accessibility.py -> build/bdist.linux-armv7l/wheel/./phaselab/chromatin
2025-12-11T23:57:25,181   copying build/lib/phaselab/chromatin/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/chromatin
2025-12-11T23:57:25,183   copying build/lib/phaselab/chromatin/tissue_models.py -> build/bdist.linux-armv7l/wheel/./phaselab/chromatin
2025-12-11T23:57:25,186   creating build/bdist.linux-armv7l/wheel/phaselab/therapy
2025-12-11T23:57:25,188   copying build/lib/phaselab/therapy/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/therapy
2025-12-11T23:57:25,190   copying build/lib/phaselab/therapy/efficacy.py -> build/bdist.linux-armv7l/wheel/./phaselab/therapy
2025-12-11T23:57:25,192   copying build/lib/phaselab/therapy/dosage.py -> build/bdist.linux-armv7l/wheel/./phaselab/therapy
2025-12-11T23:57:25,195   copying build/lib/phaselab/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab
2025-12-11T23:57:25,197   creating build/bdist.linux-armv7l/wheel/phaselab/io
2025-12-11T23:57:25,198   copying build/lib/phaselab/io/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/io
2025-12-11T23:57:25,200   copying build/lib/phaselab/io/export.py -> build/bdist.linux-armv7l/wheel/./phaselab/io
2025-12-11T23:57:25,203   creating build/bdist.linux-armv7l/wheel/phaselab/drug
2025-12-11T23:57:25,204   copying build/lib/phaselab/drug/pharmacokinetics.py -> build/bdist.linux-armv7l/wheel/./phaselab/drug
2025-12-11T23:57:25,206   copying build/lib/phaselab/drug/variability.py -> build/bdist.linux-armv7l/wheel/./phaselab/drug
2025-12-11T23:57:25,209   copying build/lib/phaselab/drug/chronotherapy.py -> build/bdist.linux-armv7l/wheel/./phaselab/drug
2025-12-11T23:57:25,211   copying build/lib/phaselab/drug/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/drug
2025-12-11T23:57:25,214   creating build/bdist.linux-armv7l/wheel/phaselab/targets
2025-12-11T23:57:25,215   copying build/lib/phaselab/targets/config.py -> build/bdist.linux-armv7l/wheel/./phaselab/targets
2025-12-11T23:57:25,217   copying build/lib/phaselab/targets/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/targets
2025-12-11T23:57:25,219   copying build/lib/phaselab/targets/SCN2A.yaml -> build/bdist.linux-armv7l/wheel/./phaselab/targets
2025-12-11T23:57:25,221   copying build/lib/phaselab/targets/RAI1.yaml -> build/bdist.linux-armv7l/wheel/./phaselab/targets
2025-12-11T23:57:25,224   creating build/bdist.linux-armv7l/wheel/phaselab/core
2025-12-11T23:57:25,225   copying build/lib/phaselab/core/hamiltonians.py -> build/bdist.linux-armv7l/wheel/./phaselab/core
2025-12-11T23:57:25,227   copying build/lib/phaselab/core/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/core
2025-12-11T23:57:25,229   copying build/lib/phaselab/core/constants.py -> build/bdist.linux-armv7l/wheel/./phaselab/core
2025-12-11T23:57:25,231   copying build/lib/phaselab/core/coherence.py -> build/bdist.linux-armv7l/wheel/./phaselab/core
2025-12-11T23:57:25,234   creating build/bdist.linux-armv7l/wheel/phaselab/crispr
2025-12-11T23:57:25,235   copying build/lib/phaselab/crispr/interference.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,238   copying build/lib/phaselab/crispr/base_editing.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,240   copying build/lib/phaselab/crispr/prime_editing.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,243   copying build/lib/phaselab/crispr/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,245   copying build/lib/phaselab/crispr/knockout.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,247   copying build/lib/phaselab/crispr/pam_scan.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,250   copying build/lib/phaselab/crispr/editors.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,252   copying build/lib/phaselab/crispr/pipeline.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,255   copying build/lib/phaselab/crispr/scoring.py -> build/bdist.linux-armv7l/wheel/./phaselab/crispr
2025-12-11T23:57:25,257   creating build/bdist.linux-armv7l/wheel/phaselab/circadian
2025-12-11T23:57:25,258   copying build/lib/phaselab/circadian/sms_model.py -> build/bdist.linux-armv7l/wheel/./phaselab/circadian
2025-12-11T23:57:25,261   copying build/lib/phaselab/circadian/kuramoto.py -> build/bdist.linux-armv7l/wheel/./phaselab/circadian
2025-12-11T23:57:25,263   copying build/lib/phaselab/circadian/__init__.py -> build/bdist.linux-armv7l/wheel/./phaselab/circadian
2025-12-11T23:57:25,265   copying build/lib/phaselab/circadian/multi_tissue.py -> build/bdist.linux-armv7l/wheel/./phaselab/circadian
2025-12-11T23:57:25,268   running install_egg_info
2025-12-11T23:57:25,273   Copying src/phaselab.egg-info to build/bdist.linux-armv7l/wheel/./phaselab-0.4.0-py3.11.egg-info
2025-12-11T23:57:25,286   running install_scripts
2025-12-11T23:57:25,299   creating build/bdist.linux-armv7l/wheel/phaselab-0.4.0.dist-info/WHEEL
2025-12-11T23:57:25,302   creating '/tmp/pip-wheel-pvzc2u4i/.tmp-zl1psde7/phaselab-0.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-12-11T23:57:25,305   adding 'phaselab/__init__.py'
2025-12-11T23:57:25,306   adding 'phaselab/chromatin/__init__.py'
2025-12-11T23:57:25,308   adding 'phaselab/chromatin/accessibility.py'
2025-12-11T23:57:25,310   adding 'phaselab/chromatin/integration.py'
2025-12-11T23:57:25,312   adding 'phaselab/chromatin/tissue_models.py'
2025-12-11T23:57:25,313   adding 'phaselab/circadian/__init__.py'
2025-12-11T23:57:25,315   adding 'phaselab/circadian/kuramoto.py'
2025-12-11T23:57:25,317   adding 'phaselab/circadian/multi_tissue.py'
2025-12-11T23:57:25,319   adding 'phaselab/circadian/sms_model.py'
2025-12-11T23:57:25,321   adding 'phaselab/core/__init__.py'
2025-12-11T23:57:25,323   adding 'phaselab/core/coherence.py'
2025-12-11T23:57:25,324   adding 'phaselab/core/constants.py'
2025-12-11T23:57:25,325   adding 'phaselab/core/hamiltonians.py'
2025-12-11T23:57:25,327   adding 'phaselab/crispr/__init__.py'
2025-12-11T23:57:25,330   adding 'phaselab/crispr/base_editing.py'
2025-12-11T23:57:25,332   adding 'phaselab/crispr/editors.py'
2025-12-11T23:57:25,334   adding 'phaselab/crispr/interference.py'
2025-12-11T23:57:25,336   adding 'phaselab/crispr/knockout.py'
2025-12-11T23:57:25,338   adding 'phaselab/crispr/pam_scan.py'
2025-12-11T23:57:25,340   adding 'phaselab/crispr/pipeline.py'
2025-12-11T23:57:25,343   adding 'phaselab/crispr/prime_editing.py'
2025-12-11T23:57:25,345   adding 'phaselab/crispr/scoring.py'
2025-12-11T23:57:25,346   adding 'phaselab/drug/__init__.py'
2025-12-11T23:57:25,348   adding 'phaselab/drug/chronotherapy.py'
2025-12-11T23:57:25,350   adding 'phaselab/drug/pharmacokinetics.py'
2025-12-11T23:57:25,352   adding 'phaselab/drug/variability.py'
2025-12-11T23:57:25,354   adding 'phaselab/io/__init__.py'
2025-12-11T23:57:25,356   adding 'phaselab/io/export.py'
2025-12-11T23:57:25,357   adding 'phaselab/protein/__init__.py'
2025-12-11T23:57:25,359   adding 'phaselab/protein/binding.py'
2025-12-11T23:57:25,361   adding 'phaselab/protein/dynamics.py'
2025-12-11T23:57:25,363   adding 'phaselab/protein/folding.py'
2025-12-11T23:57:25,364   adding 'phaselab/targets/RAI1.yaml'
2025-12-11T23:57:25,366   adding 'phaselab/targets/SCN2A.yaml'
2025-12-11T23:57:25,367   adding 'phaselab/targets/__init__.py'
2025-12-11T23:57:25,369   adding 'phaselab/targets/config.py'
2025-12-11T23:57:25,371   adding 'phaselab/therapy/__init__.py'
2025-12-11T23:57:25,373   adding 'phaselab/therapy/dosage.py'
2025-12-11T23:57:25,375   adding 'phaselab/therapy/efficacy.py'
2025-12-11T23:57:25,378   adding 'phaselab-0.4.0.dist-info/licenses/LICENSE'
2025-12-11T23:57:25,380   adding 'phaselab-0.4.0.dist-info/METADATA'
2025-12-11T23:57:25,381   adding 'phaselab-0.4.0.dist-info/WHEEL'
2025-12-11T23:57:25,382   adding 'phaselab-0.4.0.dist-info/entry_points.txt'
2025-12-11T23:57:25,383   adding 'phaselab-0.4.0.dist-info/top_level.txt'
2025-12-11T23:57:25,385   adding 'phaselab-0.4.0.dist-info/RECORD'
2025-12-11T23:57:25,387   removing build/bdist.linux-armv7l/wheel
2025-12-11T23:57:25,501   Building wheel for phaselab (pyproject.toml): finished with status 'done'
2025-12-11T23:57:25,508   Created wheel for phaselab: filename=phaselab-0.4.0-py3-none-any.whl size=96278 sha256=0a12ecabfa282acc4637fed3689cb6d91f95ed7577c089ba63c9df70459f44e7
2025-12-11T23:57:25,510   Stored in directory: /tmp/pip-ephem-wheel-cache-mmd8jmxo/wheels/a1/18/52/b8d96788c4a6caa730b0042b040d630030d2f10872c33e79a8
2025-12-11T23:57:25,525 Successfully built phaselab
2025-12-11T23:57:25,530 Removed build tracker: '/tmp/pip-build-tracker-qedgx94y'