2025-12-13T03:59:37,891 Created temporary directory: /tmp/pip-ephem-wheel-cache-_zg3ss5d 2025-12-13T03:59:37,893 Created temporary directory: /tmp/pip-build-tracker-337_qq3x 2025-12-13T03:59:37,893 Initialized build tracking at /tmp/pip-build-tracker-337_qq3x 2025-12-13T03:59:37,894 Created build tracker: /tmp/pip-build-tracker-337_qq3x 2025-12-13T03:59:37,894 Entered build tracker: /tmp/pip-build-tracker-337_qq3x 2025-12-13T03:59:37,895 Created temporary directory: /tmp/pip-wheel-349838ue 2025-12-13T03:59:37,898 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-13T03:59:37,900 Created temporary directory: /tmp/pip-ephem-wheel-cache-dgvp64p_ 2025-12-13T03:59:37,922 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-13T03:59:37,926 2 location(s) to search for versions of galaxy-data: 2025-12-13T03:59:37,926 * https://pypi.org/simple/galaxy-data/ 2025-12-13T03:59:37,926 * https://www.piwheels.org/simple/galaxy-data/ 2025-12-13T03:59:37,926 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-data/ 2025-12-13T03:59:37,927 Getting page https://pypi.org/simple/galaxy-data/ 2025-12-13T03:59:37,929 Found index url https://pypi.org/simple 2025-12-13T03:59:38,149 Fetched page https://pypi.org/simple/galaxy-data/ as application/vnd.pypi.simple.v1+json 2025-12-13T03:59:38,164 Found link https://files.pythonhosted.org/packages/1f/fa/d8f43cf473dabba250bd9d5fed96b1a5acc89517739bc26b91489f61fa57/galaxy-data-19.9.0.dev0.tar.gz 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https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-21.9.0-py2.py3-none-any.whl#sha256=7bd7fa30190a424a66c62f96012c6dd667990fc8ae39dcb1e4ddc6811e6c9a4d (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,418 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.9.1-py2.py3-none-any.whl#sha256=6a456ec927643665dae5c649a6a18460d79474bd5e1277274ea2174e952f94c2 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,418 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.9.0-py2.py3-none-any.whl#sha256=ec937bfcfff347039541431d9724018b14a295ecc49f0831145f8947264a5d3b (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,419 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.5.0-py2.py3-none-any.whl#sha256=7ee3d488fc5ef68f91d03116383adac3f4db74334062abb069386b01b39d80f4 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,419 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev3-py2.py3-none-any.whl#sha256=52651203dfccbfdf8b37326330598785a8c0002d69a461fba17f6a7031bdce85 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,419 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev2-py2.py3-none-any.whl#sha256=be58e78b806fa3f85a8a8d45b7f040439a0c95d461003172d2b7b4430002d33f (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,420 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev1-py2.py3-none-any.whl#sha256=ef242b3d745ced066c572d137b43095eb7df42074a5e1e8eca76ea52cf065a92 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,421 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev0-py3-none-any.whl#sha256=d4831c48a07316758b909a471cb006e270083f3ceccc3d174f78b44b07a914ff (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-13T03:59:38,421 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-data/ 2025-12-13T03:59:38,422 Skipping link: not a file: https://pypi.org/simple/galaxy-data/ 2025-12-13T03:59:38,445 Given no hashes to check 1 links for project 'galaxy-data': discarding no candidates 2025-12-13T03:59:38,463 Collecting galaxy-data==25.1.dev0 2025-12-13T03:59:38,466 Created temporary directory: /tmp/pip-unpack-i49859sa 2025-12-13T03:59:38,602 Downloading galaxy_data-25.1.dev0.tar.gz (642 kB) 2025-12-13T03:59:39,477 Added galaxy-data==25.1.dev0 from https://files.pythonhosted.org/packages/d7/bd/7774bd747e12094a8fb923b34acc38a2d0a292537b3474dcf9a0e888e6ff/galaxy_data-25.1.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-337_qq3x' 2025-12-13T03:59:39,480 Created temporary directory: /tmp/pip-build-env-ezsiawu7 2025-12-13T03:59:39,485 Installing build dependencies: started 2025-12-13T03:59:39,486 Running command pip subprocess to install build dependencies 2025-12-13T03:59:40,650 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-13T03:59:41,254 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-13T03:59:41,276 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-13T03:59:42,998 Collecting setuptools 2025-12-13T03:59:43,115 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-13T03:59:46,099 Installing collected packages: setuptools 2025-12-13T03:59:49,806 Successfully installed setuptools-80.9.0 2025-12-13T03:59:50,075 Installing build dependencies: finished with status 'done' 2025-12-13T03:59:50,081 Getting requirements to build wheel: started 2025-12-13T03:59:50,082 Running command Getting requirements to build wheel 2025-12-13T03:59:50,656 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-13T03:59:50,656 !! 2025-12-13T03:59:50,657 ******************************************************************************** 2025-12-13T03:59:50,658 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-13T03:59:50,659 License :: OSI Approved :: Academic Free License (AFL) 2025-12-13T03:59:50,660 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-13T03:59:50,660 ******************************************************************************** 2025-12-13T03:59:50,661 !! 2025-12-13T03:59:50,662 self._finalize_license_expression() 2025-12-13T03:59:50,722 running egg_info 2025-12-13T03:59:50,729 writing galaxy_data.egg-info/PKG-INFO 2025-12-13T03:59:50,737 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2025-12-13T03:59:50,739 writing entry points to galaxy_data.egg-info/entry_points.txt 2025-12-13T03:59:50,741 writing requirements to galaxy_data.egg-info/requires.txt 2025-12-13T03:59:50,742 writing top-level names to galaxy_data.egg-info/top_level.txt 2025-12-13T03:59:50,796 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-13T03:59:50,831 reading manifest template 'MANIFEST.in' 2025-12-13T03:59:50,873 adding license file 'LICENSE' 2025-12-13T03:59:50,892 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-13T03:59:50,982 Getting requirements to build wheel: finished with status 'done' 2025-12-13T03:59:50,986 Created temporary directory: /tmp/pip-modern-metadata-uzmtc9my 2025-12-13T03:59:50,988 Preparing metadata (pyproject.toml): started 2025-12-13T03:59:50,989 Running command Preparing metadata (pyproject.toml) 2025-12-13T03:59:51,546 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-13T03:59:51,546 !! 2025-12-13T03:59:51,547 ******************************************************************************** 2025-12-13T03:59:51,548 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-13T03:59:51,549 License :: OSI Approved :: Academic Free License (AFL) 2025-12-13T03:59:51,550 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-13T03:59:51,550 ******************************************************************************** 2025-12-13T03:59:51,552 !! 2025-12-13T03:59:51,552 self._finalize_license_expression() 2025-12-13T03:59:51,571 running dist_info 2025-12-13T03:59:51,583 creating /tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info 2025-12-13T03:59:51,584 writing /tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/PKG-INFO 2025-12-13T03:59:51,592 writing dependency_links to /tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/dependency_links.txt 2025-12-13T03:59:51,594 writing entry points to /tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/entry_points.txt 2025-12-13T03:59:51,596 writing requirements to /tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/requires.txt 2025-12-13T03:59:51,597 writing top-level names to /tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/top_level.txt 2025-12-13T03:59:51,598 writing manifest file '/tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/SOURCES.txt' 2025-12-13T03:59:51,646 reading manifest file '/tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/SOURCES.txt' 2025-12-13T03:59:51,648 reading manifest template 'MANIFEST.in' 2025-12-13T03:59:51,683 adding license file 'LICENSE' 2025-12-13T03:59:51,696 writing manifest file '/tmp/pip-modern-metadata-uzmtc9my/galaxy_data.egg-info/SOURCES.txt' 2025-12-13T03:59:51,698 creating '/tmp/pip-modern-metadata-uzmtc9my/galaxy_data-25.1.dev0.dist-info' 2025-12-13T03:59:51,838 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-13T03:59:51,848 Source in /tmp/pip-wheel-349838ue/galaxy-data_34f6a6ddf83a42b18bf2c9de25f95844 has version 25.1.dev0, which satisfies requirement galaxy-data==25.1.dev0 from https://files.pythonhosted.org/packages/d7/bd/7774bd747e12094a8fb923b34acc38a2d0a292537b3474dcf9a0e888e6ff/galaxy_data-25.1.dev0.tar.gz 2025-12-13T03:59:51,849 Removed galaxy-data==25.1.dev0 from https://files.pythonhosted.org/packages/d7/bd/7774bd747e12094a8fb923b34acc38a2d0a292537b3474dcf9a0e888e6ff/galaxy_data-25.1.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-337_qq3x' 2025-12-13T03:59:51,865 Created temporary directory: /tmp/pip-unpack-97770fns 2025-12-13T03:59:51,866 Building wheels for collected packages: galaxy-data 2025-12-13T03:59:51,871 Created temporary directory: /tmp/pip-wheel-qtcd30s4 2025-12-13T03:59:51,872 Destination directory: /tmp/pip-wheel-qtcd30s4 2025-12-13T03:59:51,874 Building wheel for galaxy-data (pyproject.toml): started 2025-12-13T03:59:51,875 Running command Building wheel for galaxy-data (pyproject.toml) 2025-12-13T03:59:52,449 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-13T03:59:52,449 !! 2025-12-13T03:59:52,451 ******************************************************************************** 2025-12-13T03:59:52,451 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-13T03:59:52,452 License :: OSI Approved :: Academic Free License (AFL) 2025-12-13T03:59:52,454 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-13T03:59:52,455 ******************************************************************************** 2025-12-13T03:59:52,456 !! 2025-12-13T03:59:52,457 self._finalize_license_expression() 2025-12-13T03:59:52,480 running bdist_wheel 2025-12-13T03:59:52,510 running build 2025-12-13T03:59:52,511 running build_py 2025-12-13T03:59:52,520 creating build/lib/galaxy 2025-12-13T03:59:52,523 copying galaxy/__init__.py -> build/lib/galaxy 2025-12-13T03:59:52,525 creating build/lib/galaxy/quota 2025-12-13T03:59:52,526 copying galaxy/quota/__init__.py -> build/lib/galaxy/quota 2025-12-13T03:59:52,529 copying galaxy/quota/_schema.py -> build/lib/galaxy/quota 2025-12-13T03:59:52,533 creating build/lib/galaxy/security 2025-12-13T03:59:52,534 copying galaxy/security/idencoding.py -> build/lib/galaxy/security 2025-12-13T03:59:52,536 copying galaxy/security/vault.py -> build/lib/galaxy/security 2025-12-13T03:59:52,539 copying galaxy/security/__init__.py -> build/lib/galaxy/security 2025-12-13T03:59:52,541 copying galaxy/security/ssh_util.py -> build/lib/galaxy/security 2025-12-13T03:59:52,543 copying galaxy/security/passwords.py -> build/lib/galaxy/security 2025-12-13T03:59:52,545 copying galaxy/security/validate_user_input.py -> build/lib/galaxy/security 2025-12-13T03:59:52,548 copying galaxy/security/object_wrapper.py -> build/lib/galaxy/security 2025-12-13T03:59:52,552 creating build/lib/galaxy/model 2025-12-13T03:59:52,553 copying galaxy/model/database_heartbeat.py -> build/lib/galaxy/model 2025-12-13T03:59:52,555 copying galaxy/model/deferred.py -> build/lib/galaxy/model 2025-12-13T03:59:52,558 copying galaxy/model/scoped_session.py -> build/lib/galaxy/model 2025-12-13T03:59:52,560 copying galaxy/model/custom_types.py -> build/lib/galaxy/model 2025-12-13T03:59:52,563 copying galaxy/model/__init__.py -> build/lib/galaxy/model 2025-12-13T03:59:52,575 copying galaxy/model/dereference.py -> build/lib/galaxy/model 2025-12-13T03:59:52,577 copying galaxy/model/database_utils.py -> build/lib/galaxy/model 2025-12-13T03:59:52,580 copying galaxy/model/database_object_names.py -> build/lib/galaxy/model 2025-12-13T03:59:52,582 copying galaxy/model/metadata.py -> build/lib/galaxy/model 2025-12-13T03:59:52,584 copying galaxy/model/tags.py -> build/lib/galaxy/model 2025-12-13T03:59:52,587 copying galaxy/model/none_like.py -> build/lib/galaxy/model 2025-12-13T03:59:52,589 copying galaxy/model/index_filter_util.py -> build/lib/galaxy/model 2025-12-13T03:59:52,591 copying galaxy/model/mapping.py -> build/lib/galaxy/model 2025-12-13T03:59:52,593 copying galaxy/model/base.py -> build/lib/galaxy/model 2025-12-13T03:59:52,595 copying galaxy/model/item_attrs.py -> build/lib/galaxy/model 2025-12-13T03:59:52,598 copying galaxy/model/security.py -> build/lib/galaxy/model 2025-12-13T03:59:52,604 creating build/lib/galaxy/datatypes 2025-12-13T03:59:52,605 copying galaxy/datatypes/mothur.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,608 copying galaxy/datatypes/tabular.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,611 copying galaxy/datatypes/assembly.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,614 copying galaxy/datatypes/genetics.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,618 copying galaxy/datatypes/proteomics.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,621 copying galaxy/datatypes/sequence.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,626 copying galaxy/datatypes/images.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,629 copying galaxy/datatypes/qualityscore.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,631 copying galaxy/datatypes/sniff.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,634 copying galaxy/datatypes/qiime2.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,637 copying galaxy/datatypes/phylip.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,639 copying galaxy/datatypes/registry.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,642 copying galaxy/datatypes/goldenpath.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,645 copying galaxy/datatypes/msa.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,648 copying galaxy/datatypes/data.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,651 copying galaxy/datatypes/anvio.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,654 copying galaxy/datatypes/coverage.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,656 copying galaxy/datatypes/__init__.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,658 copying galaxy/datatypes/flow.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,660 copying galaxy/datatypes/xml.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,663 copying galaxy/datatypes/upload_util.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,665 copying galaxy/datatypes/speech.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,667 copying galaxy/datatypes/binary.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,677 copying galaxy/datatypes/isa.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,680 copying galaxy/datatypes/checkers.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,682 copying galaxy/datatypes/larch.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,684 copying galaxy/datatypes/neo4j.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,687 copying galaxy/datatypes/media.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,690 copying galaxy/datatypes/text.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,693 copying galaxy/datatypes/metacyto.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,695 copying galaxy/datatypes/chrominfo.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,697 copying galaxy/datatypes/molecules.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,700 copying galaxy/datatypes/spaln.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,702 copying galaxy/datatypes/tracks.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,704 copying galaxy/datatypes/constructive_solid_geometry.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,708 copying galaxy/datatypes/interval.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,711 copying galaxy/datatypes/metadata.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,713 copying galaxy/datatypes/protocols.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,715 copying galaxy/datatypes/gis.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,717 copying galaxy/datatypes/plant_tribes.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,720 copying galaxy/datatypes/chain.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,722 copying galaxy/datatypes/annotation.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,724 copying galaxy/datatypes/blast.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,727 copying galaxy/datatypes/triples.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,729 copying galaxy/datatypes/microarrays.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,731 copying galaxy/datatypes/ngsindex.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,733 copying galaxy/datatypes/hdf5.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,735 copying galaxy/datatypes/graph.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,737 copying galaxy/datatypes/_schema.py -> build/lib/galaxy/datatypes 2025-12-13T03:59:52,740 creating build/lib/galaxy/model/tool_shed_install 2025-12-13T03:59:52,741 copying galaxy/model/tool_shed_install/__init__.py -> build/lib/galaxy/model/tool_shed_install 2025-12-13T03:59:52,744 copying galaxy/model/tool_shed_install/mapping.py -> build/lib/galaxy/model/tool_shed_install 2025-12-13T03:59:52,747 creating build/lib/galaxy/model/orm 2025-12-13T03:59:52,748 copying galaxy/model/orm/engine_factory.py -> build/lib/galaxy/model/orm 2025-12-13T03:59:52,750 copying galaxy/model/orm/util.py -> build/lib/galaxy/model/orm 2025-12-13T03:59:52,752 copying galaxy/model/orm/now.py -> build/lib/galaxy/model/orm 2025-12-13T03:59:52,754 copying galaxy/model/orm/__init__.py -> build/lib/galaxy/model/orm 2025-12-13T03:59:52,756 copying galaxy/model/orm/scripts.py -> build/lib/galaxy/model/orm 2025-12-13T03:59:52,759 creating build/lib/galaxy/model/scripts 2025-12-13T03:59:52,760 copying galaxy/model/scripts/delete_galaxy_sessions.py -> build/lib/galaxy/model/scripts 2025-12-13T03:59:52,762 copying galaxy/model/scripts/__init__.py -> build/lib/galaxy/model/scripts 2025-12-13T03:59:52,763 copying galaxy/model/scripts/history_table_pruner.py -> build/lib/galaxy/model/scripts 2025-12-13T03:59:52,766 copying galaxy/model/scripts/prune_history_table.py -> build/lib/galaxy/model/scripts 2025-12-13T03:59:52,768 copying galaxy/model/scripts/delete_job_metrics.py -> build/lib/galaxy/model/scripts 2025-12-13T03:59:52,770 creating build/lib/galaxy/model/triggers 2025-12-13T03:59:52,771 copying galaxy/model/triggers/update_audit_table.py -> build/lib/galaxy/model/triggers 2025-12-13T03:59:52,774 copying galaxy/model/triggers/__init__.py -> build/lib/galaxy/model/triggers 2025-12-13T03:59:52,776 creating build/lib/galaxy/model/db 2025-12-13T03:59:52,777 copying galaxy/model/db/role.py -> build/lib/galaxy/model/db 2025-12-13T03:59:52,779 copying galaxy/model/db/library.py -> build/lib/galaxy/model/db 2025-12-13T03:59:52,781 copying galaxy/model/db/user.py -> build/lib/galaxy/model/db 2025-12-13T03:59:52,783 copying galaxy/model/db/__init__.py -> build/lib/galaxy/model/db 2025-12-13T03:59:52,785 creating build/lib/galaxy/model/migrations 2025-12-13T03:59:52,786 copying galaxy/model/migrations/dbscript.py -> build/lib/galaxy/model/migrations 2025-12-13T03:59:52,788 copying galaxy/model/migrations/util.py -> build/lib/galaxy/model/migrations 2025-12-13T03:59:52,791 copying galaxy/model/migrations/exceptions.py -> build/lib/galaxy/model/migrations 2025-12-13T03:59:52,793 copying galaxy/model/migrations/__init__.py -> build/lib/galaxy/model/migrations 2025-12-13T03:59:52,795 copying galaxy/model/migrations/scripts.py -> build/lib/galaxy/model/migrations 2025-12-13T03:59:52,797 copying galaxy/model/migrations/base.py -> build/lib/galaxy/model/migrations 2025-12-13T03:59:52,801 creating build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,802 copying galaxy/model/dataset_collections/matching.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,804 copying galaxy/model/dataset_collections/type_description.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,807 copying galaxy/model/dataset_collections/structure.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,809 copying galaxy/model/dataset_collections/adapters.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,811 copying galaxy/model/dataset_collections/rule_target_models.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,813 copying galaxy/model/dataset_collections/rule_target_columns.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,815 copying galaxy/model/dataset_collections/registry.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,817 copying galaxy/model/dataset_collections/auto_pairing.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,820 copying galaxy/model/dataset_collections/query.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,822 copying galaxy/model/dataset_collections/__init__.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,823 copying galaxy/model/dataset_collections/auto_identifiers.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,825 copying galaxy/model/dataset_collections/subcollections.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,827 copying galaxy/model/dataset_collections/workbook_util.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,830 copying galaxy/model/dataset_collections/builder.py -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:52,832 creating build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,834 copying galaxy/model/unittest_utils/utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,836 copying galaxy/model/unittest_utils/db_helpers.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,837 copying galaxy/model/unittest_utils/data_app.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,840 copying galaxy/model/unittest_utils/beaker_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,842 copying galaxy/model/unittest_utils/__init__.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,843 copying galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,845 copying galaxy/model/unittest_utils/store_fixtures.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,848 copying galaxy/model/unittest_utils/model_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-13T03:59:52,851 creating build/lib/galaxy/model/store 2025-12-13T03:59:52,852 copying galaxy/model/store/ro_crate_utils.py -> build/lib/galaxy/model/store 2025-12-13T03:59:52,855 copying galaxy/model/store/__init__.py -> build/lib/galaxy/model/store 2025-12-13T03:59:52,861 copying galaxy/model/store/load_objects.py -> build/lib/galaxy/model/store 2025-12-13T03:59:52,863 copying galaxy/model/store/_bco_convert_utils.py -> build/lib/galaxy/model/store 2025-12-13T03:59:52,865 copying galaxy/model/store/discover.py -> build/lib/galaxy/model/store 2025-12-13T03:59:52,868 copying galaxy/model/store/build_objects.py -> build/lib/galaxy/model/store 2025-12-13T03:59:52,870 creating build/lib/galaxy/model/migrations/data_fixes 2025-12-13T03:59:52,871 copying galaxy/model/migrations/data_fixes/user_table_fixer.py -> build/lib/galaxy/model/migrations/data_fixes 2025-12-13T03:59:52,874 copying galaxy/model/migrations/data_fixes/__init__.py -> build/lib/galaxy/model/migrations/data_fixes 2025-12-13T03:59:52,875 copying galaxy/model/migrations/data_fixes/association_table_fixer.py -> build/lib/galaxy/model/migrations/data_fixes 2025-12-13T03:59:52,878 creating build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,879 copying galaxy/model/dataset_collections/types/paired.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,881 copying galaxy/model/dataset_collections/types/sample_sheet_util.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,883 copying galaxy/model/dataset_collections/types/list.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,885 copying galaxy/model/dataset_collections/types/sample_sheet_workbook.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,888 copying galaxy/model/dataset_collections/types/__init__.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,890 copying galaxy/model/dataset_collections/types/record.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,892 copying galaxy/model/dataset_collections/types/paired_or_unpaired.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,894 copying galaxy/model/dataset_collections/types/semantics.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,896 copying galaxy/model/dataset_collections/types/sample_sheet.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-13T03:59:52,899 creating build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,901 copying galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,903 copying galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,905 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,906 copying galaxy/datatypes/converters/interval_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,908 copying galaxy/datatypes/converters/interval_to_fli.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,910 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,912 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,914 copying galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,916 copying galaxy/datatypes/converters/tabular_csv.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,918 copying galaxy/datatypes/converters/__init__.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,920 copying galaxy/datatypes/converters/bed_to_gff_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,922 copying galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,924 copying galaxy/datatypes/converters/fasta_to_len.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,926 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,928 copying galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,930 copying galaxy/datatypes/converters/maf_to_interval_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,932 copying galaxy/datatypes/converters/gff_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,934 copying galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,936 copying galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,938 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,939 copying galaxy/datatypes/converters/lped_to_fped_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,941 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,943 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,946 copying galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,947 copying galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,949 copying galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:52,952 creating build/lib/galaxy/datatypes/util 2025-12-13T03:59:52,953 copying galaxy/datatypes/util/__init__.py -> build/lib/galaxy/datatypes/util 2025-12-13T03:59:52,955 copying galaxy/datatypes/util/generic_util.py -> build/lib/galaxy/datatypes/util 2025-12-13T03:59:52,957 copying galaxy/datatypes/util/gff_util.py -> build/lib/galaxy/datatypes/util 2025-12-13T03:59:52,959 copying galaxy/datatypes/util/maf_utilities.py -> build/lib/galaxy/datatypes/util 2025-12-13T03:59:52,963 creating build/lib/galaxy/datatypes/display_applications 2025-12-13T03:59:52,964 copying galaxy/datatypes/display_applications/util.py -> build/lib/galaxy/datatypes/display_applications 2025-12-13T03:59:52,966 copying galaxy/datatypes/display_applications/__init__.py -> build/lib/galaxy/datatypes/display_applications 2025-12-13T03:59:52,969 copying galaxy/datatypes/display_applications/application.py -> build/lib/galaxy/datatypes/display_applications 2025-12-13T03:59:52,971 copying galaxy/datatypes/display_applications/parameters.py -> build/lib/galaxy/datatypes/display_applications 2025-12-13T03:59:52,974 creating build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,976 copying galaxy/datatypes/dataproviders/dataset.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,979 copying galaxy/datatypes/dataproviders/chunk.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,981 copying galaxy/datatypes/dataproviders/line.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,983 copying galaxy/datatypes/dataproviders/exceptions.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,985 copying galaxy/datatypes/dataproviders/__init__.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,987 copying galaxy/datatypes/dataproviders/external.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,989 copying galaxy/datatypes/dataproviders/hierarchy.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,992 copying galaxy/datatypes/dataproviders/decorators.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,994 copying galaxy/datatypes/dataproviders/column.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,996 copying galaxy/datatypes/dataproviders/base.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-13T03:59:52,999 running egg_info 2025-12-13T03:59:53,014 writing galaxy_data.egg-info/PKG-INFO 2025-12-13T03:59:53,021 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2025-12-13T03:59:53,023 writing entry points to galaxy_data.egg-info/entry_points.txt 2025-12-13T03:59:53,025 writing requirements to galaxy_data.egg-info/requires.txt 2025-12-13T03:59:53,026 writing top-level names to galaxy_data.egg-info/top_level.txt 2025-12-13T03:59:53,057 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-13T03:59:53,077 reading manifest template 'MANIFEST.in' 2025-12-13T03:59:53,115 adding license file 'LICENSE' 2025-12-13T03:59:53,133 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-13T03:59:53,138 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.biom' is absent from the `packages` configuration. 2025-12-13T03:59:53,138 !! 2025-12-13T03:59:53,139 ******************************************************************************** 2025-12-13T03:59:53,140 ############################ 2025-12-13T03:59:53,141 # Package would be ignored # 2025-12-13T03:59:53,141 ############################ 2025-12-13T03:59:53,141 Python recognizes 'galaxy.datatypes.display_applications.configs.biom' as an importable package[^1], 2025-12-13T03:59:53,142 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,143 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,144 package, please make sure that 'galaxy.datatypes.display_applications.configs.biom' is explicitly added 2025-12-13T03:59:53,144 to the `packages` configuration field. 2025-12-13T03:59:53,145 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,146 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,146 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,147 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,148 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,150 If you don't want 'galaxy.datatypes.display_applications.configs.biom' to be distributed and are 2025-12-13T03:59:53,150 already explicitly excluding 'galaxy.datatypes.display_applications.configs.biom' via 2025-12-13T03:59:53,151 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,151 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,152 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,153 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,154 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,156 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,157 even if it does not contain any `.py` files. 2025-12-13T03:59:53,157 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,158 directory, all directories are treated like packages. 2025-12-13T03:59:53,158 ******************************************************************************** 2025-12-13T03:59:53,159 !! 2025-12-13T03:59:53,160 check.warn(importable) 2025-12-13T03:59:53,161 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.ensembl' is absent from the `packages` configuration. 2025-12-13T03:59:53,161 !! 2025-12-13T03:59:53,163 ******************************************************************************** 2025-12-13T03:59:53,163 ############################ 2025-12-13T03:59:53,164 # Package would be ignored # 2025-12-13T03:59:53,164 ############################ 2025-12-13T03:59:53,165 Python recognizes 'galaxy.datatypes.display_applications.configs.ensembl' as an importable package[^1], 2025-12-13T03:59:53,166 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,166 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,167 package, please make sure that 'galaxy.datatypes.display_applications.configs.ensembl' is explicitly added 2025-12-13T03:59:53,167 to the `packages` configuration field. 2025-12-13T03:59:53,168 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,169 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,170 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,171 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,171 If you don't want 'galaxy.datatypes.display_applications.configs.ensembl' to be distributed and are 2025-12-13T03:59:53,172 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ensembl' via 2025-12-13T03:59:53,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,173 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,174 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,176 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,177 even if it does not contain any `.py` files. 2025-12-13T03:59:53,178 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,178 directory, all directories are treated like packages. 2025-12-13T03:59:53,179 ******************************************************************************** 2025-12-13T03:59:53,180 !! 2025-12-13T03:59:53,180 check.warn(importable) 2025-12-13T03:59:53,181 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.gbrowse' is absent from the `packages` configuration. 2025-12-13T03:59:53,181 !! 2025-12-13T03:59:53,183 ******************************************************************************** 2025-12-13T03:59:53,183 ############################ 2025-12-13T03:59:53,184 # Package would be ignored # 2025-12-13T03:59:53,184 ############################ 2025-12-13T03:59:53,185 Python recognizes 'galaxy.datatypes.display_applications.configs.gbrowse' as an importable package[^1], 2025-12-13T03:59:53,185 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,186 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,187 package, please make sure that 'galaxy.datatypes.display_applications.configs.gbrowse' is explicitly added 2025-12-13T03:59:53,187 to the `packages` configuration field. 2025-12-13T03:59:53,188 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,189 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,190 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,191 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,192 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,193 If you don't want 'galaxy.datatypes.display_applications.configs.gbrowse' to be distributed and are 2025-12-13T03:59:53,194 already explicitly excluding 'galaxy.datatypes.display_applications.configs.gbrowse' via 2025-12-13T03:59:53,194 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,195 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,195 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,196 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,197 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,198 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,199 even if it does not contain any `.py` files. 2025-12-13T03:59:53,200 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,200 directory, all directories are treated like packages. 2025-12-13T03:59:53,201 ******************************************************************************** 2025-12-13T03:59:53,202 !! 2025-12-13T03:59:53,202 check.warn(importable) 2025-12-13T03:59:53,203 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.icn3d' is absent from the `packages` configuration. 2025-12-13T03:59:53,203 !! 2025-12-13T03:59:53,204 ******************************************************************************** 2025-12-13T03:59:53,205 ############################ 2025-12-13T03:59:53,205 # Package would be ignored # 2025-12-13T03:59:53,206 ############################ 2025-12-13T03:59:53,206 Python recognizes 'galaxy.datatypes.display_applications.configs.icn3d' as an importable package[^1], 2025-12-13T03:59:53,207 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,208 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,209 package, please make sure that 'galaxy.datatypes.display_applications.configs.icn3d' is explicitly added 2025-12-13T03:59:53,209 to the `packages` configuration field. 2025-12-13T03:59:53,210 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,211 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,211 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,213 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,214 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,215 If you don't want 'galaxy.datatypes.display_applications.configs.icn3d' to be distributed and are 2025-12-13T03:59:53,215 already explicitly excluding 'galaxy.datatypes.display_applications.configs.icn3d' via 2025-12-13T03:59:53,216 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,216 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,217 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,218 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,219 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,221 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,221 even if it does not contain any `.py` files. 2025-12-13T03:59:53,222 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,223 directory, all directories are treated like packages. 2025-12-13T03:59:53,223 ******************************************************************************** 2025-12-13T03:59:53,224 !! 2025-12-13T03:59:53,224 check.warn(importable) 2025-12-13T03:59:53,225 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.igb' is absent from the `packages` configuration. 2025-12-13T03:59:53,225 !! 2025-12-13T03:59:53,226 ******************************************************************************** 2025-12-13T03:59:53,227 ############################ 2025-12-13T03:59:53,227 # Package would be ignored # 2025-12-13T03:59:53,228 ############################ 2025-12-13T03:59:53,228 Python recognizes 'galaxy.datatypes.display_applications.configs.igb' as an importable package[^1], 2025-12-13T03:59:53,229 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,230 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,230 package, please make sure that 'galaxy.datatypes.display_applications.configs.igb' is explicitly added 2025-12-13T03:59:53,231 to the `packages` configuration field. 2025-12-13T03:59:53,232 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,232 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,233 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,234 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,235 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,236 If you don't want 'galaxy.datatypes.display_applications.configs.igb' to be distributed and are 2025-12-13T03:59:53,236 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igb' via 2025-12-13T03:59:53,237 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,238 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,238 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,239 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,241 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,242 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,243 even if it does not contain any `.py` files. 2025-12-13T03:59:53,243 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,244 directory, all directories are treated like packages. 2025-12-13T03:59:53,244 ******************************************************************************** 2025-12-13T03:59:53,246 !! 2025-12-13T03:59:53,246 check.warn(importable) 2025-12-13T03:59:53,247 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.igv' is absent from the `packages` configuration. 2025-12-13T03:59:53,247 !! 2025-12-13T03:59:53,248 ******************************************************************************** 2025-12-13T03:59:53,249 ############################ 2025-12-13T03:59:53,249 # Package would be ignored # 2025-12-13T03:59:53,250 ############################ 2025-12-13T03:59:53,250 Python recognizes 'galaxy.datatypes.display_applications.configs.igv' as an importable package[^1], 2025-12-13T03:59:53,251 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,252 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,253 package, please make sure that 'galaxy.datatypes.display_applications.configs.igv' is explicitly added 2025-12-13T03:59:53,253 to the `packages` configuration field. 2025-12-13T03:59:53,254 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,255 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,255 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,256 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,257 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,258 If you don't want 'galaxy.datatypes.display_applications.configs.igv' to be distributed and are 2025-12-13T03:59:53,258 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igv' via 2025-12-13T03:59:53,259 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,259 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,260 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,261 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,262 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,263 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,264 even if it does not contain any `.py` files. 2025-12-13T03:59:53,265 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,265 directory, all directories are treated like packages. 2025-12-13T03:59:53,266 ******************************************************************************** 2025-12-13T03:59:53,267 !! 2025-12-13T03:59:53,267 check.warn(importable) 2025-12-13T03:59:53,268 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.image' is absent from the `packages` configuration. 2025-12-13T03:59:53,268 !! 2025-12-13T03:59:53,269 ******************************************************************************** 2025-12-13T03:59:53,269 ############################ 2025-12-13T03:59:53,270 # Package would be ignored # 2025-12-13T03:59:53,270 ############################ 2025-12-13T03:59:53,271 Python recognizes 'galaxy.datatypes.display_applications.configs.image' as an importable package[^1], 2025-12-13T03:59:53,271 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,272 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,273 package, please make sure that 'galaxy.datatypes.display_applications.configs.image' is explicitly added 2025-12-13T03:59:53,273 to the `packages` configuration field. 2025-12-13T03:59:53,274 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,275 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,275 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,277 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,278 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,279 If you don't want 'galaxy.datatypes.display_applications.configs.image' to be distributed and are 2025-12-13T03:59:53,279 already explicitly excluding 'galaxy.datatypes.display_applications.configs.image' via 2025-12-13T03:59:53,280 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,280 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,281 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,282 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,283 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,284 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,284 even if it does not contain any `.py` files. 2025-12-13T03:59:53,285 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,285 directory, all directories are treated like packages. 2025-12-13T03:59:53,286 ******************************************************************************** 2025-12-13T03:59:53,286 !! 2025-12-13T03:59:53,287 check.warn(importable) 2025-12-13T03:59:53,287 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.intermine' is absent from the `packages` configuration. 2025-12-13T03:59:53,288 !! 2025-12-13T03:59:53,289 ******************************************************************************** 2025-12-13T03:59:53,289 ############################ 2025-12-13T03:59:53,290 # Package would be ignored # 2025-12-13T03:59:53,290 ############################ 2025-12-13T03:59:53,291 Python recognizes 'galaxy.datatypes.display_applications.configs.intermine' as an importable package[^1], 2025-12-13T03:59:53,291 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,292 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,292 package, please make sure that 'galaxy.datatypes.display_applications.configs.intermine' is explicitly added 2025-12-13T03:59:53,293 to the `packages` configuration field. 2025-12-13T03:59:53,294 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,294 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,295 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,296 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,297 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,298 If you don't want 'galaxy.datatypes.display_applications.configs.intermine' to be distributed and are 2025-12-13T03:59:53,298 already explicitly excluding 'galaxy.datatypes.display_applications.configs.intermine' via 2025-12-13T03:59:53,299 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,299 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,300 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,301 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,302 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,304 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,304 even if it does not contain any `.py` files. 2025-12-13T03:59:53,305 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,305 directory, all directories are treated like packages. 2025-12-13T03:59:53,306 ******************************************************************************** 2025-12-13T03:59:53,307 !! 2025-12-13T03:59:53,307 check.warn(importable) 2025-12-13T03:59:53,308 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.iobio' is absent from the `packages` configuration. 2025-12-13T03:59:53,308 !! 2025-12-13T03:59:53,309 ******************************************************************************** 2025-12-13T03:59:53,309 ############################ 2025-12-13T03:59:53,310 # Package would be ignored # 2025-12-13T03:59:53,310 ############################ 2025-12-13T03:59:53,310 Python recognizes 'galaxy.datatypes.display_applications.configs.iobio' as an importable package[^1], 2025-12-13T03:59:53,311 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,312 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,312 package, please make sure that 'galaxy.datatypes.display_applications.configs.iobio' is explicitly added 2025-12-13T03:59:53,313 to the `packages` configuration field. 2025-12-13T03:59:53,314 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,314 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,315 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,315 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,316 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,317 If you don't want 'galaxy.datatypes.display_applications.configs.iobio' to be distributed and are 2025-12-13T03:59:53,318 already explicitly excluding 'galaxy.datatypes.display_applications.configs.iobio' via 2025-12-13T03:59:53,318 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,319 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,319 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,320 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,321 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,323 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,323 even if it does not contain any `.py` files. 2025-12-13T03:59:53,324 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,324 directory, all directories are treated like packages. 2025-12-13T03:59:53,325 ******************************************************************************** 2025-12-13T03:59:53,326 !! 2025-12-13T03:59:53,326 check.warn(importable) 2025-12-13T03:59:53,327 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.minerva' is absent from the `packages` configuration. 2025-12-13T03:59:53,327 !! 2025-12-13T03:59:53,328 ******************************************************************************** 2025-12-13T03:59:53,329 ############################ 2025-12-13T03:59:53,329 # Package would be ignored # 2025-12-13T03:59:53,330 ############################ 2025-12-13T03:59:53,330 Python recognizes 'galaxy.datatypes.display_applications.configs.minerva' as an importable package[^1], 2025-12-13T03:59:53,331 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,332 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,333 package, please make sure that 'galaxy.datatypes.display_applications.configs.minerva' is explicitly added 2025-12-13T03:59:53,333 to the `packages` configuration field. 2025-12-13T03:59:53,334 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,334 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,335 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,336 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,336 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,337 If you don't want 'galaxy.datatypes.display_applications.configs.minerva' to be distributed and are 2025-12-13T03:59:53,338 already explicitly excluding 'galaxy.datatypes.display_applications.configs.minerva' via 2025-12-13T03:59:53,338 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,339 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,339 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,340 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,341 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,342 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,343 even if it does not contain any `.py` files. 2025-12-13T03:59:53,343 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,344 directory, all directories are treated like packages. 2025-12-13T03:59:53,344 ******************************************************************************** 2025-12-13T03:59:53,345 !! 2025-12-13T03:59:53,346 check.warn(importable) 2025-12-13T03:59:53,346 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is absent from the `packages` configuration. 2025-12-13T03:59:53,347 !! 2025-12-13T03:59:53,348 ******************************************************************************** 2025-12-13T03:59:53,348 ############################ 2025-12-13T03:59:53,349 # Package would be ignored # 2025-12-13T03:59:53,349 ############################ 2025-12-13T03:59:53,350 Python recognizes 'galaxy.datatypes.display_applications.configs.qiime.qiime2' as an importable package[^1], 2025-12-13T03:59:53,350 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,351 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,352 package, please make sure that 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is explicitly added 2025-12-13T03:59:53,352 to the `packages` configuration field. 2025-12-13T03:59:53,353 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,354 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,354 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,355 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,356 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,357 If you don't want 'galaxy.datatypes.display_applications.configs.qiime.qiime2' to be distributed and are 2025-12-13T03:59:53,358 already explicitly excluding 'galaxy.datatypes.display_applications.configs.qiime.qiime2' via 2025-12-13T03:59:53,358 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,359 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,359 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,360 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,361 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,362 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,363 even if it does not contain any `.py` files. 2025-12-13T03:59:53,363 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,364 directory, all directories are treated like packages. 2025-12-13T03:59:53,364 ******************************************************************************** 2025-12-13T03:59:53,365 !! 2025-12-13T03:59:53,366 check.warn(importable) 2025-12-13T03:59:53,366 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.rviewer' is absent from the `packages` configuration. 2025-12-13T03:59:53,367 !! 2025-12-13T03:59:53,368 ******************************************************************************** 2025-12-13T03:59:53,368 ############################ 2025-12-13T03:59:53,369 # Package would be ignored # 2025-12-13T03:59:53,369 ############################ 2025-12-13T03:59:53,370 Python recognizes 'galaxy.datatypes.display_applications.configs.rviewer' as an importable package[^1], 2025-12-13T03:59:53,370 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,371 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,372 package, please make sure that 'galaxy.datatypes.display_applications.configs.rviewer' is explicitly added 2025-12-13T03:59:53,372 to the `packages` configuration field. 2025-12-13T03:59:53,373 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,374 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,375 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,376 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,377 If you don't want 'galaxy.datatypes.display_applications.configs.rviewer' to be distributed and are 2025-12-13T03:59:53,378 already explicitly excluding 'galaxy.datatypes.display_applications.configs.rviewer' via 2025-12-13T03:59:53,378 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,379 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,379 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,381 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,382 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,383 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,384 even if it does not contain any `.py` files. 2025-12-13T03:59:53,384 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,385 directory, all directories are treated like packages. 2025-12-13T03:59:53,385 ******************************************************************************** 2025-12-13T03:59:53,387 !! 2025-12-13T03:59:53,387 check.warn(importable) 2025-12-13T03:59:53,388 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.ucsc' is absent from the `packages` configuration. 2025-12-13T03:59:53,388 !! 2025-12-13T03:59:53,389 ******************************************************************************** 2025-12-13T03:59:53,390 ############################ 2025-12-13T03:59:53,390 # Package would be ignored # 2025-12-13T03:59:53,391 ############################ 2025-12-13T03:59:53,391 Python recognizes 'galaxy.datatypes.display_applications.configs.ucsc' as an importable package[^1], 2025-12-13T03:59:53,392 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,393 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,393 package, please make sure that 'galaxy.datatypes.display_applications.configs.ucsc' is explicitly added 2025-12-13T03:59:53,393 to the `packages` configuration field. 2025-12-13T03:59:53,394 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,395 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,396 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,396 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,398 If you don't want 'galaxy.datatypes.display_applications.configs.ucsc' to be distributed and are 2025-12-13T03:59:53,399 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ucsc' via 2025-12-13T03:59:53,399 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,400 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,400 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,401 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,402 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,404 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,404 even if it does not contain any `.py` files. 2025-12-13T03:59:53,404 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,405 directory, all directories are treated like packages. 2025-12-13T03:59:53,405 ******************************************************************************** 2025-12-13T03:59:53,407 !! 2025-12-13T03:59:53,407 check.warn(importable) 2025-12-13T03:59:53,408 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.xsd' is absent from the `packages` configuration. 2025-12-13T03:59:53,408 !! 2025-12-13T03:59:53,409 ******************************************************************************** 2025-12-13T03:59:53,410 ############################ 2025-12-13T03:59:53,410 # Package would be ignored # 2025-12-13T03:59:53,411 ############################ 2025-12-13T03:59:53,411 Python recognizes 'galaxy.datatypes.display_applications.xsd' as an importable package[^1], 2025-12-13T03:59:53,412 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,413 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,414 package, please make sure that 'galaxy.datatypes.display_applications.xsd' is explicitly added 2025-12-13T03:59:53,414 to the `packages` configuration field. 2025-12-13T03:59:53,415 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,416 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,416 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,417 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,418 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,419 If you don't want 'galaxy.datatypes.display_applications.xsd' to be distributed and are 2025-12-13T03:59:53,419 already explicitly excluding 'galaxy.datatypes.display_applications.xsd' via 2025-12-13T03:59:53,420 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,420 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,421 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,421 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,422 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,424 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,424 even if it does not contain any `.py` files. 2025-12-13T03:59:53,425 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,425 directory, all directories are treated like packages. 2025-12-13T03:59:53,426 ******************************************************************************** 2025-12-13T03:59:53,427 !! 2025-12-13T03:59:53,427 check.warn(importable) 2025-12-13T03:59:53,428 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic' is absent from the `packages` configuration. 2025-12-13T03:59:53,428 !! 2025-12-13T03:59:53,429 ******************************************************************************** 2025-12-13T03:59:53,430 ############################ 2025-12-13T03:59:53,430 # Package would be ignored # 2025-12-13T03:59:53,431 ############################ 2025-12-13T03:59:53,431 Python recognizes 'galaxy.model.migrations.alembic' as an importable package[^1], 2025-12-13T03:59:53,432 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,433 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,433 package, please make sure that 'galaxy.model.migrations.alembic' is explicitly added 2025-12-13T03:59:53,434 to the `packages` configuration field. 2025-12-13T03:59:53,435 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,436 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,436 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,437 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,438 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,439 If you don't want 'galaxy.model.migrations.alembic' to be distributed and are 2025-12-13T03:59:53,440 already explicitly excluding 'galaxy.model.migrations.alembic' via 2025-12-13T03:59:53,441 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,441 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,442 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,443 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,444 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,445 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,446 even if it does not contain any `.py` files. 2025-12-13T03:59:53,446 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,447 directory, all directories are treated like packages. 2025-12-13T03:59:53,447 ******************************************************************************** 2025-12-13T03:59:53,448 !! 2025-12-13T03:59:53,448 check.warn(importable) 2025-12-13T03:59:53,449 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic.versions_gxy' is absent from the `packages` configuration. 2025-12-13T03:59:53,449 !! 2025-12-13T03:59:53,450 ******************************************************************************** 2025-12-13T03:59:53,451 ############################ 2025-12-13T03:59:53,451 # Package would be ignored # 2025-12-13T03:59:53,452 ############################ 2025-12-13T03:59:53,452 Python recognizes 'galaxy.model.migrations.alembic.versions_gxy' as an importable package[^1], 2025-12-13T03:59:53,453 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,454 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,454 package, please make sure that 'galaxy.model.migrations.alembic.versions_gxy' is explicitly added 2025-12-13T03:59:53,455 to the `packages` configuration field. 2025-12-13T03:59:53,456 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,457 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,458 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,459 If you don't want 'galaxy.model.migrations.alembic.versions_gxy' to be distributed and are 2025-12-13T03:59:53,460 already explicitly excluding 'galaxy.model.migrations.alembic.versions_gxy' via 2025-12-13T03:59:53,460 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,461 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,462 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,463 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,464 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,465 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,466 even if it does not contain any `.py` files. 2025-12-13T03:59:53,466 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,467 directory, all directories are treated like packages. 2025-12-13T03:59:53,467 ******************************************************************************** 2025-12-13T03:59:53,468 !! 2025-12-13T03:59:53,469 check.warn(importable) 2025-12-13T03:59:53,470 /tmp/pip-build-env-ezsiawu7/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic.versions_tsi' is absent from the `packages` configuration. 2025-12-13T03:59:53,470 !! 2025-12-13T03:59:53,471 ******************************************************************************** 2025-12-13T03:59:53,472 ############################ 2025-12-13T03:59:53,472 # Package would be ignored # 2025-12-13T03:59:53,473 ############################ 2025-12-13T03:59:53,473 Python recognizes 'galaxy.model.migrations.alembic.versions_tsi' as an importable package[^1], 2025-12-13T03:59:53,474 but it is absent from setuptools' `packages` configuration. 2025-12-13T03:59:53,475 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T03:59:53,475 package, please make sure that 'galaxy.model.migrations.alembic.versions_tsi' is explicitly added 2025-12-13T03:59:53,476 to the `packages` configuration field. 2025-12-13T03:59:53,477 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T03:59:53,477 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T03:59:53,478 instead of `find_packages(...)`/`find:`). 2025-12-13T03:59:53,479 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T03:59:53,479 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T03:59:53,480 If you don't want 'galaxy.model.migrations.alembic.versions_tsi' to be distributed and are 2025-12-13T03:59:53,481 already explicitly excluding 'galaxy.model.migrations.alembic.versions_tsi' via 2025-12-13T03:59:53,481 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T03:59:53,482 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T03:59:53,482 combination with a more fine grained `package-data` configuration. 2025-12-13T03:59:53,483 You can read more about "package data files" on setuptools documentation page: 2025-12-13T03:59:53,484 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T03:59:53,485 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T03:59:53,486 even if it does not contain any `.py` files. 2025-12-13T03:59:53,486 On the other hand, currently there is no concept of package data 2025-12-13T03:59:53,487 directory, all directories are treated like packages. 2025-12-13T03:59:53,487 ******************************************************************************** 2025-12-13T03:59:53,488 !! 2025-12-13T03:59:53,489 check.warn(importable) 2025-12-13T03:59:53,489 copying galaxy/py.typed -> build/lib/galaxy 2025-12-13T03:59:53,490 copying galaxy/datatypes/set_metadata_tool.xml -> build/lib/galaxy/datatypes 2025-12-13T03:59:53,490 copying galaxy/model/migrations/README.md -> build/lib/galaxy/model/migrations 2025-12-13T03:59:53,491 copying galaxy/model/migrations/alembic.ini -> build/lib/galaxy/model/migrations 2025-12-13T03:59:53,491 creating build/lib/galaxy/model/migrations/alembic 2025-12-13T03:59:53,492 copying galaxy/model/migrations/alembic/env.py -> build/lib/galaxy/model/migrations/alembic 2025-12-13T03:59:53,492 copying galaxy/model/migrations/alembic/script.py.mako -> build/lib/galaxy/model/migrations/alembic 2025-12-13T03:59:53,493 creating build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,493 copying galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,494 copying galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,494 copying galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,495 copying galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,495 copying galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,496 copying galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,496 copying galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,497 copying galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,497 copying galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,498 copying galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,498 copying galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,499 copying galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,499 copying galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,500 copying galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,500 copying galaxy/model/migrations/alembic/versions_gxy/338d0e5deb03_add_cleanup_event_user_assoc_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,501 copying galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,501 copying galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,502 copying galaxy/model/migrations/alembic/versions_gxy/3af58c192752_implement_sample_sheets.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,502 copying galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,503 copying galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,503 copying galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,504 copying galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,504 copying galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,505 copying galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,506 copying galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,506 copying galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,507 copying galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,507 copying galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,508 copying galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,508 copying galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,509 copying galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,509 copying galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,510 copying galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,510 copying galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,511 copying galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,511 copying galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,512 copying galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,512 copying galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,513 copying galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,513 copying galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,514 copying galaxy/model/migrations/alembic/versions_gxy/c0959ad462b2_add_tool_id_and_tool_version_to_tool_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,514 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,515 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,515 copying galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,516 copying galaxy/model/migrations/alembic/versions_gxy/c44ae5f3dcf1_merge_25_0_into_dev.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,516 copying galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,517 copying galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,517 copying galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,518 copying galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,518 copying galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,519 copying galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,519 copying galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,520 copying galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,520 copying galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,520 copying galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,521 copying galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,521 copying galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,522 copying galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,522 copying galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,523 copying galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,523 copying galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,524 copying galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,524 copying galaxy/model/migrations/alembic/versions_gxy/fb16d09348db_dataset_source_requested_transform.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,524 creating build/lib/galaxy/model/migrations/alembic/versions_tsi 2025-12-13T03:59:53,525 copying galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_tsi 2025-12-13T03:59:53,525 copying galaxy/model/dataset_collections/rule_targets.yml -> build/lib/galaxy/model/dataset_collections 2025-12-13T03:59:53,526 copying galaxy/datatypes/converters/archive_to_directory.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,526 copying galaxy/datatypes/converters/bam_to_bai.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,527 copying galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,528 copying galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,528 copying galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,529 copying galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,529 copying galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,530 copying galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,530 copying galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,531 copying galaxy/datatypes/converters/bigbed_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,532 copying galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,532 copying galaxy/datatypes/converters/biom.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,532 copying galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,533 copying galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,533 copying galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,534 copying galaxy/datatypes/converters/csv_to_tabular.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,534 copying galaxy/datatypes/converters/fasta_to_2bit.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,534 copying galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,535 copying galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,535 copying galaxy/datatypes/converters/fasta_to_fai.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,536 copying galaxy/datatypes/converters/fasta_to_len.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,536 copying galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,537 copying galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,537 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,538 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,538 copying galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,539 copying galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,539 copying galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,540 copying galaxy/datatypes/converters/gro_to_pdb.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,540 copying galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,541 copying galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,541 copying galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,542 copying galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,542 copying galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,543 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,544 copying galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,544 copying galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,545 copying galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,545 copying galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,546 copying galaxy/datatypes/converters/len_to_linecount.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,546 copying galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,547 copying galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,547 copying galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,547 copying galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,548 copying galaxy/datatypes/converters/mdconvert.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,548 copying galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,549 copying galaxy/datatypes/converters/molecules_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,549 copying galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,550 copying galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,550 copying galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,550 copying galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,551 copying galaxy/datatypes/converters/pdb_to_gro.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,551 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,552 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,552 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,553 copying galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,553 copying galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,554 copying galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,554 copying galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,555 copying galaxy/datatypes/converters/tabular_to_csv.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,555 copying galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,556 copying galaxy/datatypes/converters/tar_to_directory.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,556 copying galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,557 copying galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,557 copying galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,558 copying galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,560 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,562 copying galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,564 copying galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,566 copying galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-13T03:59:53,569 creating build/lib/galaxy/datatypes/display_applications/configs/biom 2025-12-13T03:59:53,570 copying galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/biom 2025-12-13T03:59:53,573 creating build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:53,574 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:53,576 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:53,578 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:53,581 creating build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:53,582 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:53,584 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:53,586 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:53,588 creating build/lib/galaxy/datatypes/display_applications/configs/icn3d 2025-12-13T03:59:53,589 copying galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/icn3d 2025-12-13T03:59:53,592 creating build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,593 copying galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,595 copying galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,597 copying galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,600 copying galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,602 copying galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,604 copying galaxy/datatypes/display_applications/configs/igb/cram.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,607 copying galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,609 copying galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:53,611 creating build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,612 copying galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,615 copying galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,618 copying galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,620 copying galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,623 copying galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,626 copying galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,629 copying galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:53,632 creating build/lib/galaxy/datatypes/display_applications/configs/image 2025-12-13T03:59:53,633 copying galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/lib/galaxy/datatypes/display_applications/configs/image 2025-12-13T03:59:53,635 creating build/lib/galaxy/datatypes/display_applications/configs/intermine 2025-12-13T03:59:53,636 copying galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/intermine 2025-12-13T03:59:53,639 creating build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-12-13T03:59:53,640 copying galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-12-13T03:59:53,642 copying galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-12-13T03:59:53,644 creating build/lib/galaxy/datatypes/display_applications/configs/minerva 2025-12-13T03:59:53,645 copying galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/lib/galaxy/datatypes/display_applications/configs/minerva 2025-12-13T03:59:53,648 creating build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-13T03:59:53,649 copying galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-13T03:59:53,652 creating build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-12-13T03:59:53,653 copying galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-12-13T03:59:53,656 copying galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-12-13T03:59:53,658 creating build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,660 copying galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,662 copying galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,665 copying galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,667 copying galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,669 copying galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,672 copying galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,675 copying galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:53,678 creating build/lib/galaxy/datatypes/display_applications/xsd 2025-12-13T03:59:53,680 copying galaxy/datatypes/display_applications/xsd/geda.xsd -> build/lib/galaxy/datatypes/display_applications/xsd 2025-12-13T03:59:53,722 installing to build/bdist.linux-armv7l/wheel 2025-12-13T03:59:53,723 running install 2025-12-13T03:59:53,758 running install_lib 2025-12-13T03:59:53,770 creating build/bdist.linux-armv7l/wheel 2025-12-13T03:59:53,773 creating build/bdist.linux-armv7l/wheel/galaxy 2025-12-13T03:59:53,774 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T03:59:53,777 creating build/bdist.linux-armv7l/wheel/galaxy/quota 2025-12-13T03:59:53,778 copying build/lib/galaxy/quota/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/quota 2025-12-13T03:59:53,781 copying build/lib/galaxy/quota/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/quota 2025-12-13T03:59:53,784 creating build/bdist.linux-armv7l/wheel/galaxy/security 2025-12-13T03:59:53,785 copying build/lib/galaxy/security/idencoding.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-13T03:59:53,788 copying build/lib/galaxy/security/vault.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-13T03:59:53,790 copying build/lib/galaxy/security/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-13T03:59:53,792 copying build/lib/galaxy/security/ssh_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-13T03:59:53,794 copying build/lib/galaxy/security/passwords.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-13T03:59:53,797 copying build/lib/galaxy/security/validate_user_input.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-13T03:59:53,799 copying build/lib/galaxy/security/object_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-13T03:59:53,802 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T03:59:53,805 creating build/bdist.linux-armv7l/wheel/galaxy/model 2025-12-13T03:59:53,806 copying build/lib/galaxy/model/database_heartbeat.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:53,808 copying build/lib/galaxy/model/deferred.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:53,811 copying build/lib/galaxy/model/scoped_session.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:53,813 creating build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2025-12-13T03:59:53,814 copying build/lib/galaxy/model/tool_shed_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/tool_shed_install 2025-12-13T03:59:53,817 copying build/lib/galaxy/model/tool_shed_install/mapping.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/tool_shed_install 2025-12-13T03:59:53,820 creating build/bdist.linux-armv7l/wheel/galaxy/model/orm 2025-12-13T03:59:53,821 copying build/lib/galaxy/model/orm/engine_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-13T03:59:53,823 copying build/lib/galaxy/model/orm/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-13T03:59:53,825 copying build/lib/galaxy/model/orm/now.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-13T03:59:53,827 copying build/lib/galaxy/model/orm/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-13T03:59:53,829 copying build/lib/galaxy/model/orm/scripts.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-13T03:59:53,831 copying build/lib/galaxy/model/custom_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:53,835 creating build/bdist.linux-armv7l/wheel/galaxy/model/scripts 2025-12-13T03:59:53,836 copying build/lib/galaxy/model/scripts/delete_galaxy_sessions.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-13T03:59:53,838 copying build/lib/galaxy/model/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-13T03:59:53,839 copying build/lib/galaxy/model/scripts/history_table_pruner.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-13T03:59:53,842 copying build/lib/galaxy/model/scripts/prune_history_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-13T03:59:53,844 copying build/lib/galaxy/model/scripts/delete_job_metrics.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-13T03:59:53,846 copying build/lib/galaxy/model/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:53,861 creating build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2025-12-13T03:59:53,862 copying build/lib/galaxy/model/triggers/update_audit_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/triggers 2025-12-13T03:59:53,865 copying build/lib/galaxy/model/triggers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/triggers 2025-12-13T03:59:53,867 creating build/bdist.linux-armv7l/wheel/galaxy/model/db 2025-12-13T03:59:53,868 copying build/lib/galaxy/model/db/role.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-13T03:59:53,870 copying build/lib/galaxy/model/db/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-13T03:59:53,872 copying build/lib/galaxy/model/db/user.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-13T03:59:53,874 copying build/lib/galaxy/model/db/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-13T03:59:53,876 copying build/lib/galaxy/model/dereference.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:53,878 copying build/lib/galaxy/model/database_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:53,881 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2025-12-13T03:59:53,882 copying build/lib/galaxy/model/migrations/alembic.ini -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:53,884 copying build/lib/galaxy/model/migrations/dbscript.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:53,886 copying build/lib/galaxy/model/migrations/README.md -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:53,888 copying build/lib/galaxy/model/migrations/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:53,891 copying build/lib/galaxy/model/migrations/exceptions.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:53,893 copying build/lib/galaxy/model/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:53,896 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/data_fixes 2025-12-13T03:59:53,897 copying build/lib/galaxy/model/migrations/data_fixes/user_table_fixer.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-12-13T03:59:53,900 copying build/lib/galaxy/model/migrations/data_fixes/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-12-13T03:59:53,902 copying build/lib/galaxy/model/migrations/data_fixes/association_table_fixer.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-12-13T03:59:53,904 copying build/lib/galaxy/model/migrations/scripts.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:53,907 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2025-12-13T03:59:53,908 copying build/lib/galaxy/model/migrations/alembic/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic 2025-12-13T03:59:53,911 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_tsi 2025-12-13T03:59:53,912 copying build/lib/galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_tsi 2025-12-13T03:59:53,914 copying build/lib/galaxy/model/migrations/alembic/script.py.mako -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic 2025-12-13T03:59:53,918 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,919 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,921 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,923 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,925 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,927 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,929 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,931 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,933 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,935 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,937 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,939 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,941 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,943 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,945 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,946 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,948 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,950 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,952 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,954 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,956 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,958 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,960 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,962 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,964 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/338d0e5deb03_add_cleanup_event_user_assoc_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,967 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,970 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,971 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/fb16d09348db_dataset_source_requested_transform.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,973 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,976 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,977 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,979 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,981 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,983 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c44ae5f3dcf1_merge_25_0_into_dev.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,985 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,987 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c0959ad462b2_add_tool_id_and_tool_version_to_tool_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,989 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,991 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,993 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,995 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,997 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:53,999 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,001 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,003 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,005 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3af58c192752_implement_sample_sheets.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,007 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,009 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,011 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,013 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,015 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,017 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,019 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,021 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,023 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,024 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,026 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,028 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,031 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,033 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,035 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,037 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,039 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,041 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,043 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-13T03:59:54,045 copying build/lib/galaxy/model/migrations/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-13T03:59:54,049 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2025-12-13T03:59:54,050 copying build/lib/galaxy/model/dataset_collections/matching.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,052 copying build/lib/galaxy/model/dataset_collections/type_description.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,055 copying build/lib/galaxy/model/dataset_collections/structure.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,057 copying build/lib/galaxy/model/dataset_collections/adapters.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,059 copying build/lib/galaxy/model/dataset_collections/rule_targets.yml -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,062 copying build/lib/galaxy/model/dataset_collections/rule_target_models.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,064 copying build/lib/galaxy/model/dataset_collections/rule_target_columns.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,066 copying build/lib/galaxy/model/dataset_collections/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,068 copying build/lib/galaxy/model/dataset_collections/auto_pairing.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,070 copying build/lib/galaxy/model/dataset_collections/query.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,072 copying build/lib/galaxy/model/dataset_collections/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,074 copying build/lib/galaxy/model/dataset_collections/auto_identifiers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,077 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2025-12-13T03:59:54,077 copying build/lib/galaxy/model/dataset_collections/types/paired.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,079 copying build/lib/galaxy/model/dataset_collections/types/sample_sheet_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,082 copying build/lib/galaxy/model/dataset_collections/types/list.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,084 copying build/lib/galaxy/model/dataset_collections/types/sample_sheet_workbook.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,086 copying build/lib/galaxy/model/dataset_collections/types/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,088 copying build/lib/galaxy/model/dataset_collections/types/record.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,090 copying build/lib/galaxy/model/dataset_collections/types/paired_or_unpaired.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,092 copying build/lib/galaxy/model/dataset_collections/types/semantics.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,095 copying build/lib/galaxy/model/dataset_collections/types/sample_sheet.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-13T03:59:54,097 copying build/lib/galaxy/model/dataset_collections/subcollections.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,098 copying build/lib/galaxy/model/dataset_collections/workbook_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,101 copying build/lib/galaxy/model/dataset_collections/builder.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-13T03:59:54,103 copying build/lib/galaxy/model/database_object_names.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,106 creating build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2025-12-13T03:59:54,107 copying build/lib/galaxy/model/unittest_utils/utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,109 copying build/lib/galaxy/model/unittest_utils/db_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,110 copying build/lib/galaxy/model/unittest_utils/data_app.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,113 copying build/lib/galaxy/model/unittest_utils/beaker_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,114 copying build/lib/galaxy/model/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,116 copying build/lib/galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,118 copying build/lib/galaxy/model/unittest_utils/store_fixtures.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,121 copying build/lib/galaxy/model/unittest_utils/model_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-13T03:59:54,123 copying build/lib/galaxy/model/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,126 copying build/lib/galaxy/model/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,129 copying build/lib/galaxy/model/none_like.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,131 copying build/lib/galaxy/model/index_filter_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,133 copying build/lib/galaxy/model/mapping.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,135 creating build/bdist.linux-armv7l/wheel/galaxy/model/store 2025-12-13T03:59:54,136 copying build/lib/galaxy/model/store/ro_crate_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-13T03:59:54,139 copying build/lib/galaxy/model/store/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-13T03:59:54,144 copying build/lib/galaxy/model/store/load_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-13T03:59:54,146 copying build/lib/galaxy/model/store/_bco_convert_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-13T03:59:54,148 copying build/lib/galaxy/model/store/discover.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-13T03:59:54,151 copying build/lib/galaxy/model/store/build_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-13T03:59:54,154 copying build/lib/galaxy/model/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,156 copying build/lib/galaxy/model/item_attrs.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,159 copying build/lib/galaxy/model/security.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-13T03:59:54,164 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes 2025-12-13T03:59:54,165 copying build/lib/galaxy/datatypes/mothur.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,168 copying build/lib/galaxy/datatypes/tabular.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,172 copying build/lib/galaxy/datatypes/assembly.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,174 copying build/lib/galaxy/datatypes/genetics.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,178 copying build/lib/galaxy/datatypes/proteomics.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,181 copying build/lib/galaxy/datatypes/sequence.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,186 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2025-12-13T03:59:54,187 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,189 copying build/lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,191 copying build/lib/galaxy/datatypes/converters/len_to_linecount.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,193 copying build/lib/galaxy/datatypes/converters/bam_to_bai.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,195 copying build/lib/galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,197 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,199 copying build/lib/galaxy/datatypes/converters/bigbed_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,201 copying build/lib/galaxy/datatypes/converters/fasta_to_len.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,203 copying build/lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,205 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,207 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,209 copying build/lib/galaxy/datatypes/converters/biom.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,211 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,213 copying build/lib/galaxy/datatypes/converters/tar_to_directory.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,215 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,217 copying build/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,219 copying build/lib/galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,220 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,222 copying build/lib/galaxy/datatypes/converters/interval_to_fli.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,225 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,227 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,228 copying build/lib/galaxy/datatypes/converters/gro_to_pdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,230 copying build/lib/galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,232 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,234 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,236 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,238 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,240 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,241 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,243 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,245 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,247 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,249 copying build/lib/galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,251 copying build/lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,252 copying build/lib/galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,254 copying build/lib/galaxy/datatypes/converters/tabular_csv.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,256 copying build/lib/galaxy/datatypes/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,258 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,260 copying build/lib/galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,262 copying build/lib/galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,264 copying build/lib/galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,265 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,267 copying build/lib/galaxy/datatypes/converters/pdb_to_gro.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,269 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,271 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,273 copying build/lib/galaxy/datatypes/converters/fasta_to_fai.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,275 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,277 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,279 copying build/lib/galaxy/datatypes/converters/mdconvert.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,281 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,283 copying build/lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,284 copying build/lib/galaxy/datatypes/converters/fasta_to_2bit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,286 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,288 copying build/lib/galaxy/datatypes/converters/archive_to_directory.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,290 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,292 copying build/lib/galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,294 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,296 copying build/lib/galaxy/datatypes/converters/fasta_to_len.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,298 copying build/lib/galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,300 copying build/lib/galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,302 copying build/lib/galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,304 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,306 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,307 copying build/lib/galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,309 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,312 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,314 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,316 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,317 copying build/lib/galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,319 copying build/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,321 copying build/lib/galaxy/datatypes/converters/molecules_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,323 copying build/lib/galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,325 copying build/lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,327 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,329 copying build/lib/galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,331 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,332 copying build/lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,334 copying build/lib/galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,336 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,338 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,340 copying build/lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,342 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,344 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,345 copying build/lib/galaxy/datatypes/converters/tabular_to_csv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,347 copying build/lib/galaxy/datatypes/converters/csv_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,349 copying build/lib/galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,351 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,353 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,355 copying build/lib/galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,357 copying build/lib/galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,358 copying build/lib/galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,360 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,362 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,364 copying build/lib/galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,366 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,367 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-13T03:59:54,369 copying build/lib/galaxy/datatypes/images.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,372 copying build/lib/galaxy/datatypes/qualityscore.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,373 copying build/lib/galaxy/datatypes/sniff.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,376 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2025-12-13T03:59:54,377 copying build/lib/galaxy/datatypes/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-13T03:59:54,379 copying build/lib/galaxy/datatypes/util/generic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-13T03:59:54,381 copying build/lib/galaxy/datatypes/util/gff_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-13T03:59:54,383 copying build/lib/galaxy/datatypes/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-13T03:59:54,386 copying build/lib/galaxy/datatypes/qiime2.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,388 copying build/lib/galaxy/datatypes/phylip.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,390 copying build/lib/galaxy/datatypes/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,394 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2025-12-13T03:59:54,395 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs 2025-12-13T03:59:54,397 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:54,398 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:54,400 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:54,402 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-12-13T03:59:54,404 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/biom 2025-12-13T03:59:54,405 copying build/lib/galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/biom 2025-12-13T03:59:54,408 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/minerva 2025-12-13T03:59:54,409 copying build/lib/galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/minerva 2025-12-13T03:59:54,411 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,412 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,414 copying build/lib/galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,417 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,419 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,421 copying build/lib/galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,423 copying build/lib/galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,426 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-13T03:59:54,429 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2025-12-13T03:59:54,430 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/rviewer 2025-12-13T03:59:54,432 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/rviewer 2025-12-13T03:59:54,434 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:54,435 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:54,438 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:54,439 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-12-13T03:59:54,442 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/image 2025-12-13T03:59:54,443 copying build/lib/galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/image 2025-12-13T03:59:54,445 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2025-12-13T03:59:54,446 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/iobio 2025-12-13T03:59:54,448 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/iobio 2025-12-13T03:59:54,451 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime 2025-12-13T03:59:54,452 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-13T03:59:54,454 copying build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-13T03:59:54,456 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,457 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,459 copying build/lib/galaxy/datatypes/display_applications/configs/igb/cram.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,461 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,463 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,465 copying build/lib/galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,467 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,469 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,470 copying build/lib/galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-13T03:59:54,473 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/intermine 2025-12-13T03:59:54,474 copying build/lib/galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/intermine 2025-12-13T03:59:54,476 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/icn3d 2025-12-13T03:59:54,477 copying build/lib/galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/icn3d 2025-12-13T03:59:54,480 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,481 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,483 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,485 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,487 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,489 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,491 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,493 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-13T03:59:54,494 copying build/lib/galaxy/datatypes/display_applications/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-13T03:59:54,496 copying build/lib/galaxy/datatypes/display_applications/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-13T03:59:54,498 copying build/lib/galaxy/datatypes/display_applications/application.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-13T03:59:54,501 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/xsd 2025-12-13T03:59:54,502 copying build/lib/galaxy/datatypes/display_applications/xsd/geda.xsd -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/xsd 2025-12-13T03:59:54,505 copying build/lib/galaxy/datatypes/display_applications/parameters.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-13T03:59:54,508 copying build/lib/galaxy/datatypes/goldenpath.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,511 copying build/lib/galaxy/datatypes/msa.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,513 copying build/lib/galaxy/datatypes/data.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,517 copying build/lib/galaxy/datatypes/anvio.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,519 copying build/lib/galaxy/datatypes/coverage.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,521 copying build/lib/galaxy/datatypes/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,522 copying build/lib/galaxy/datatypes/flow.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,524 copying build/lib/galaxy/datatypes/set_metadata_tool.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,526 copying build/lib/galaxy/datatypes/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,529 copying build/lib/galaxy/datatypes/upload_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,531 copying build/lib/galaxy/datatypes/speech.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,533 copying build/lib/galaxy/datatypes/binary.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,538 copying build/lib/galaxy/datatypes/isa.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,540 copying build/lib/galaxy/datatypes/checkers.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,542 copying build/lib/galaxy/datatypes/larch.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,545 copying build/lib/galaxy/datatypes/neo4j.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,547 copying build/lib/galaxy/datatypes/media.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,549 copying build/lib/galaxy/datatypes/text.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,553 copying build/lib/galaxy/datatypes/metacyto.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,554 copying build/lib/galaxy/datatypes/chrominfo.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,556 copying build/lib/galaxy/datatypes/molecules.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,561 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2025-12-13T03:59:54,562 copying build/lib/galaxy/datatypes/dataproviders/dataset.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,565 copying build/lib/galaxy/datatypes/dataproviders/chunk.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,567 copying build/lib/galaxy/datatypes/dataproviders/line.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,570 copying build/lib/galaxy/datatypes/dataproviders/exceptions.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,572 copying build/lib/galaxy/datatypes/dataproviders/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,574 copying build/lib/galaxy/datatypes/dataproviders/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,576 copying build/lib/galaxy/datatypes/dataproviders/hierarchy.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,578 copying build/lib/galaxy/datatypes/dataproviders/decorators.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,581 copying build/lib/galaxy/datatypes/dataproviders/column.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,583 copying build/lib/galaxy/datatypes/dataproviders/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-13T03:59:54,586 copying build/lib/galaxy/datatypes/spaln.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,588 copying build/lib/galaxy/datatypes/tracks.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,590 copying build/lib/galaxy/datatypes/constructive_solid_geometry.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,593 copying build/lib/galaxy/datatypes/interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,596 copying build/lib/galaxy/datatypes/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,598 copying build/lib/galaxy/datatypes/protocols.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,600 copying build/lib/galaxy/datatypes/gis.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,603 copying build/lib/galaxy/datatypes/plant_tribes.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,605 copying build/lib/galaxy/datatypes/chain.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,607 copying build/lib/galaxy/datatypes/annotation.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,609 copying build/lib/galaxy/datatypes/blast.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,612 copying build/lib/galaxy/datatypes/triples.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,614 copying build/lib/galaxy/datatypes/microarrays.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,616 copying build/lib/galaxy/datatypes/ngsindex.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,618 copying build/lib/galaxy/datatypes/hdf5.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,620 copying build/lib/galaxy/datatypes/graph.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,623 copying build/lib/galaxy/datatypes/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-13T03:59:54,625 running install_egg_info 2025-12-13T03:59:54,639 Copying galaxy_data.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_data-25.1.dev0-py3.11.egg-info 2025-12-13T03:59:54,654 running install_scripts 2025-12-13T03:59:54,669 creating build/bdist.linux-armv7l/wheel/galaxy_data-25.1.dev0.dist-info/WHEEL 2025-12-13T03:59:54,672 creating '/tmp/pip-wheel-qtcd30s4/.tmp-i172y018/galaxy_data-25.1.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-13T03:59:54,674 adding 'galaxy/__init__.py' 2025-12-13T03:59:54,676 adding 'galaxy/py.typed' 2025-12-13T03:59:54,678 adding 'galaxy/datatypes/__init__.py' 2025-12-13T03:59:54,680 adding 'galaxy/datatypes/_schema.py' 2025-12-13T03:59:54,681 adding 'galaxy/datatypes/annotation.py' 2025-12-13T03:59:54,683 adding 'galaxy/datatypes/anvio.py' 2025-12-13T03:59:54,685 adding 'galaxy/datatypes/assembly.py' 2025-12-13T03:59:54,700 adding 'galaxy/datatypes/binary.py' 2025-12-13T03:59:54,703 adding 'galaxy/datatypes/blast.py' 2025-12-13T03:59:54,705 adding 'galaxy/datatypes/chain.py' 2025-12-13T03:59:54,706 adding 'galaxy/datatypes/checkers.py' 2025-12-13T03:59:54,707 adding 'galaxy/datatypes/chrominfo.py' 2025-12-13T03:59:54,711 adding 'galaxy/datatypes/constructive_solid_geometry.py' 2025-12-13T03:59:54,713 adding 'galaxy/datatypes/coverage.py' 2025-12-13T03:59:54,720 adding 'galaxy/datatypes/data.py' 2025-12-13T03:59:54,722 adding 'galaxy/datatypes/flow.py' 2025-12-13T03:59:54,726 adding 'galaxy/datatypes/genetics.py' 2025-12-13T03:59:54,728 adding 'galaxy/datatypes/gis.py' 2025-12-13T03:59:54,731 adding 'galaxy/datatypes/goldenpath.py' 2025-12-13T03:59:54,733 adding 'galaxy/datatypes/graph.py' 2025-12-13T03:59:54,734 adding 'galaxy/datatypes/hdf5.py' 2025-12-13T03:59:54,737 adding 'galaxy/datatypes/images.py' 2025-12-13T03:59:54,745 adding 'galaxy/datatypes/interval.py' 2025-12-13T03:59:54,747 adding 'galaxy/datatypes/isa.py' 2025-12-13T03:59:54,749 adding 'galaxy/datatypes/larch.py' 2025-12-13T03:59:54,751 adding 'galaxy/datatypes/media.py' 2025-12-13T03:59:54,752 adding 'galaxy/datatypes/metacyto.py' 2025-12-13T03:59:54,753 adding 'galaxy/datatypes/metadata.py' 2025-12-13T03:59:54,754 adding 'galaxy/datatypes/microarrays.py' 2025-12-13T03:59:54,759 adding 'galaxy/datatypes/molecules.py' 2025-12-13T03:59:54,763 adding 'galaxy/datatypes/mothur.py' 2025-12-13T03:59:54,765 adding 'galaxy/datatypes/msa.py' 2025-12-13T03:59:54,766 adding 'galaxy/datatypes/neo4j.py' 2025-12-13T03:59:54,768 adding 'galaxy/datatypes/ngsindex.py' 2025-12-13T03:59:54,769 adding 'galaxy/datatypes/phylip.py' 2025-12-13T03:59:54,771 adding 'galaxy/datatypes/plant_tribes.py' 2025-12-13T03:59:54,774 adding 'galaxy/datatypes/proteomics.py' 2025-12-13T03:59:54,775 adding 'galaxy/datatypes/protocols.py' 2025-12-13T03:59:54,777 adding 'galaxy/datatypes/qiime2.py' 2025-12-13T03:59:54,779 adding 'galaxy/datatypes/qualityscore.py' 2025-12-13T03:59:54,785 adding 'galaxy/datatypes/registry.py' 2025-12-13T03:59:54,791 adding 'galaxy/datatypes/sequence.py' 2025-12-13T03:59:54,793 adding 'galaxy/datatypes/set_metadata_tool.xml' 2025-12-13T03:59:54,797 adding 'galaxy/datatypes/sniff.py' 2025-12-13T03:59:54,798 adding 'galaxy/datatypes/spaln.py' 2025-12-13T03:59:54,800 adding 'galaxy/datatypes/speech.py' 2025-12-13T03:59:54,808 adding 'galaxy/datatypes/tabular.py' 2025-12-13T03:59:54,813 adding 'galaxy/datatypes/text.py' 2025-12-13T03:59:54,815 adding 'galaxy/datatypes/tracks.py' 2025-12-13T03:59:54,816 adding 'galaxy/datatypes/triples.py' 2025-12-13T03:59:54,818 adding 'galaxy/datatypes/upload_util.py' 2025-12-13T03:59:54,819 adding 'galaxy/datatypes/xml.py' 2025-12-13T03:59:54,823 adding 'galaxy/datatypes/converters/__init__.py' 2025-12-13T03:59:54,824 adding 'galaxy/datatypes/converters/archive_to_directory.xml' 2025-12-13T03:59:54,825 adding 'galaxy/datatypes/converters/bam_to_bai.xml' 2025-12-13T03:59:54,827 adding 'galaxy/datatypes/converters/bam_to_bigwig_converter.xml' 2025-12-13T03:59:54,828 adding 'galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml' 2025-12-13T03:59:54,829 adding 'galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml' 2025-12-13T03:59:54,830 adding 'galaxy/datatypes/converters/bed_to_fli_converter.xml' 2025-12-13T03:59:54,832 adding 'galaxy/datatypes/converters/bed_to_gff_converter.py' 2025-12-13T03:59:54,833 adding 'galaxy/datatypes/converters/bed_to_gff_converter.xml' 2025-12-13T03:59:54,834 adding 'galaxy/datatypes/converters/bed_to_interval_index_converter.xml' 2025-12-13T03:59:54,836 adding 'galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml' 2025-12-13T03:59:54,837 adding 'galaxy/datatypes/converters/bigbed_to_bed_converter.xml' 2025-12-13T03:59:54,838 adding 'galaxy/datatypes/converters/bigwig_to_wig_converter.xml' 2025-12-13T03:59:54,840 adding 'galaxy/datatypes/converters/biom.xml' 2025-12-13T03:59:54,841 adding 'galaxy/datatypes/converters/bz2_to_uncompressed.xml' 2025-12-13T03:59:54,842 adding 'galaxy/datatypes/converters/cml_to_smi_converter.xml' 2025-12-13T03:59:54,844 adding 'galaxy/datatypes/converters/cram_to_bam_converter.xml' 2025-12-13T03:59:54,845 adding 'galaxy/datatypes/converters/csv_to_tabular.xml' 2025-12-13T03:59:54,846 adding 'galaxy/datatypes/converters/fasta_to_2bit.xml' 2025-12-13T03:59:54,847 adding 'galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml' 2025-12-13T03:59:54,849 adding 'galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml' 2025-12-13T03:59:54,850 adding 'galaxy/datatypes/converters/fasta_to_fai.xml' 2025-12-13T03:59:54,851 adding 'galaxy/datatypes/converters/fasta_to_len.py' 2025-12-13T03:59:54,853 adding 'galaxy/datatypes/converters/fasta_to_len.xml' 2025-12-13T03:59:54,854 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.py' 2025-12-13T03:59:54,855 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.xml' 2025-12-13T03:59:54,857 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.py' 2025-12-13T03:59:54,858 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.xml' 2025-12-13T03:59:54,860 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py' 2025-12-13T03:59:54,861 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml' 2025-12-13T03:59:54,862 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py' 2025-12-13T03:59:54,863 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml' 2025-12-13T03:59:54,865 adding 'galaxy/datatypes/converters/gff_to_bed_converter.py' 2025-12-13T03:59:54,866 adding 'galaxy/datatypes/converters/gff_to_bed_converter.xml' 2025-12-13T03:59:54,867 adding 'galaxy/datatypes/converters/gff_to_fli_converter.xml' 2025-12-13T03:59:54,868 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.py' 2025-12-13T03:59:54,869 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.xml' 2025-12-13T03:59:54,871 adding 'galaxy/datatypes/converters/gro_to_pdb.xml' 2025-12-13T03:59:54,872 adding 'galaxy/datatypes/converters/gz_to_uncompressed.xml' 2025-12-13T03:59:54,873 adding 'galaxy/datatypes/converters/inchi_to_mol_converter.xml' 2025-12-13T03:59:54,874 adding 'galaxy/datatypes/converters/interval_to_bed12_converter.xml' 2025-12-13T03:59:54,875 adding 'galaxy/datatypes/converters/interval_to_bed6_converter.xml' 2025-12-13T03:59:54,877 adding 'galaxy/datatypes/converters/interval_to_bed_converter.py' 2025-12-13T03:59:54,878 adding 'galaxy/datatypes/converters/interval_to_bed_converter.xml' 2025-12-13T03:59:54,880 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.py' 2025-12-13T03:59:54,881 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.xml' 2025-12-13T03:59:54,882 adding 'galaxy/datatypes/converters/interval_to_bgzip_converter.xml' 2025-12-13T03:59:54,883 adding 'galaxy/datatypes/converters/interval_to_bigwig_converter.xml' 2025-12-13T03:59:54,885 adding 'galaxy/datatypes/converters/interval_to_fli.py' 2025-12-13T03:59:54,886 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.py' 2025-12-13T03:59:54,887 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.xml' 2025-12-13T03:59:54,889 adding 'galaxy/datatypes/converters/interval_to_tabix_converter.xml' 2025-12-13T03:59:54,890 adding 'galaxy/datatypes/converters/len_to_linecount.xml' 2025-12-13T03:59:54,892 adding 'galaxy/datatypes/converters/lped_to_fped_converter.py' 2025-12-13T03:59:54,893 adding 'galaxy/datatypes/converters/lped_to_fped_converter.xml' 2025-12-13T03:59:54,894 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.py' 2025-12-13T03:59:54,896 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.xml' 2025-12-13T03:59:54,897 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.py' 2025-12-13T03:59:54,898 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.xml' 2025-12-13T03:59:54,900 adding 'galaxy/datatypes/converters/maf_to_interval_converter.py' 2025-12-13T03:59:54,901 adding 'galaxy/datatypes/converters/maf_to_interval_converter.xml' 2025-12-13T03:59:54,903 adding 'galaxy/datatypes/converters/mdconvert.xml' 2025-12-13T03:59:54,904 adding 'galaxy/datatypes/converters/mol2_to_mol_converter.xml' 2025-12-13T03:59:54,906 adding 'galaxy/datatypes/converters/molecules_converter.xml' 2025-12-13T03:59:54,907 adding 'galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml' 2025-12-13T03:59:54,908 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.py' 2025-12-13T03:59:54,909 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.xml' 2025-12-13T03:59:54,911 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.py' 2025-12-13T03:59:54,912 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.xml' 2025-12-13T03:59:54,913 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.py' 2025-12-13T03:59:54,915 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.xml' 2025-12-13T03:59:54,916 adding 'galaxy/datatypes/converters/pdb_to_gro.xml' 2025-12-13T03:59:54,917 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py' 2025-12-13T03:59:54,918 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml' 2025-12-13T03:59:54,920 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.py' 2025-12-13T03:59:54,921 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.xml' 2025-12-13T03:59:54,922 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py' 2025-12-13T03:59:54,923 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml' 2025-12-13T03:59:54,924 adding 'galaxy/datatypes/converters/sam_to_bigwig_converter.xml' 2025-12-13T03:59:54,926 adding 'galaxy/datatypes/converters/sam_to_unsorted_bam.xml' 2025-12-13T03:59:54,927 adding 'galaxy/datatypes/converters/smi_to_mol_converter.xml' 2025-12-13T03:59:54,928 adding 'galaxy/datatypes/converters/smi_to_smi_converter.xml' 2025-12-13T03:59:54,929 adding 'galaxy/datatypes/converters/tabular_csv.py' 2025-12-13T03:59:54,931 adding 'galaxy/datatypes/converters/tabular_to_csv.xml' 2025-12-13T03:59:54,932 adding 'galaxy/datatypes/converters/tabular_to_dbnsfp.xml' 2025-12-13T03:59:54,933 adding 'galaxy/datatypes/converters/tar_to_directory.xml' 2025-12-13T03:59:54,935 adding 'galaxy/datatypes/converters/to_coordinate_sorted_bam.xml' 2025-12-13T03:59:54,936 adding 'galaxy/datatypes/converters/to_qname_sorted_bam.xml' 2025-12-13T03:59:54,937 adding 'galaxy/datatypes/converters/uncompressed_to_gz.xml' 2025-12-13T03:59:54,939 adding 'galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml' 2025-12-13T03:59:54,940 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.py' 2025-12-13T03:59:54,941 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.xml' 2025-12-13T03:59:54,943 adding 'galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml' 2025-12-13T03:59:54,944 adding 'galaxy/datatypes/converters/wig_to_bigwig_converter.xml' 2025-12-13T03:59:54,945 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.py' 2025-12-13T03:59:54,947 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.xml' 2025-12-13T03:59:54,949 adding 'galaxy/datatypes/dataproviders/__init__.py' 2025-12-13T03:59:54,951 adding 'galaxy/datatypes/dataproviders/base.py' 2025-12-13T03:59:54,953 adding 'galaxy/datatypes/dataproviders/chunk.py' 2025-12-13T03:59:54,955 adding 'galaxy/datatypes/dataproviders/column.py' 2025-12-13T03:59:54,958 adding 'galaxy/datatypes/dataproviders/dataset.py' 2025-12-13T03:59:54,960 adding 'galaxy/datatypes/dataproviders/decorators.py' 2025-12-13T03:59:54,961 adding 'galaxy/datatypes/dataproviders/exceptions.py' 2025-12-13T03:59:54,963 adding 'galaxy/datatypes/dataproviders/external.py' 2025-12-13T03:59:54,965 adding 'galaxy/datatypes/dataproviders/hierarchy.py' 2025-12-13T03:59:54,966 adding 'galaxy/datatypes/dataproviders/line.py' 2025-12-13T03:59:54,968 adding 'galaxy/datatypes/display_applications/__init__.py' 2025-12-13T03:59:54,971 adding 'galaxy/datatypes/display_applications/application.py' 2025-12-13T03:59:54,973 adding 'galaxy/datatypes/display_applications/parameters.py' 2025-12-13T03:59:54,974 adding 'galaxy/datatypes/display_applications/util.py' 2025-12-13T03:59:54,976 adding 'galaxy/datatypes/display_applications/configs/biom/biom_simple.xml' 2025-12-13T03:59:54,978 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml' 2025-12-13T03:59:54,979 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml' 2025-12-13T03:59:54,981 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml' 2025-12-13T03:59:54,983 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml' 2025-12-13T03:59:54,984 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml' 2025-12-13T03:59:54,985 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml' 2025-12-13T03:59:54,987 adding 'galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml' 2025-12-13T03:59:54,989 adding 'galaxy/datatypes/display_applications/configs/igb/bam.xml' 2025-12-13T03:59:54,990 adding 'galaxy/datatypes/display_applications/configs/igb/bb.xml' 2025-12-13T03:59:54,991 adding 'galaxy/datatypes/display_applications/configs/igb/bed.xml' 2025-12-13T03:59:54,992 adding 'galaxy/datatypes/display_applications/configs/igb/bedgraph.xml' 2025-12-13T03:59:54,994 adding 'galaxy/datatypes/display_applications/configs/igb/bigwig.xml' 2025-12-13T03:59:54,995 adding 'galaxy/datatypes/display_applications/configs/igb/cram.xml' 2025-12-13T03:59:54,996 adding 'galaxy/datatypes/display_applications/configs/igb/gtf.xml' 2025-12-13T03:59:54,997 adding 'galaxy/datatypes/display_applications/configs/igb/wig.xml' 2025-12-13T03:59:54,999 adding 'galaxy/datatypes/display_applications/configs/igv/bam.xml' 2025-12-13T03:59:55,001 adding 'galaxy/datatypes/display_applications/configs/igv/bigwig.xml' 2025-12-13T03:59:55,002 adding 'galaxy/datatypes/display_applications/configs/igv/genbank.xml' 2025-12-13T03:59:55,004 adding 'galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml' 2025-12-13T03:59:55,005 adding 'galaxy/datatypes/display_applications/configs/igv/gff.xml' 2025-12-13T03:59:55,007 adding 'galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml' 2025-12-13T03:59:55,008 adding 'galaxy/datatypes/display_applications/configs/igv/vcf.xml' 2025-12-13T03:59:55,010 adding 'galaxy/datatypes/display_applications/configs/image/avivator.xml' 2025-12-13T03:59:55,011 adding 'galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml' 2025-12-13T03:59:55,013 adding 'galaxy/datatypes/display_applications/configs/iobio/bam.xml' 2025-12-13T03:59:55,014 adding 'galaxy/datatypes/display_applications/configs/iobio/vcf.xml' 2025-12-13T03:59:55,016 adding 'galaxy/datatypes/display_applications/configs/minerva/tabular.xml' 2025-12-13T03:59:55,018 adding 'galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml' 2025-12-13T03:59:55,020 adding 'galaxy/datatypes/display_applications/configs/rviewer/bed.xml' 2025-12-13T03:59:55,021 adding 'galaxy/datatypes/display_applications/configs/rviewer/vcf.xml' 2025-12-13T03:59:55,023 adding 'galaxy/datatypes/display_applications/configs/ucsc/bam.xml' 2025-12-13T03:59:55,024 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml' 2025-12-13T03:59:55,025 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml' 2025-12-13T03:59:55,027 adding 'galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml' 2025-12-13T03:59:55,028 adding 'galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml' 2025-12-13T03:59:55,029 adding 'galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml' 2025-12-13T03:59:55,030 adding 'galaxy/datatypes/display_applications/configs/ucsc/vcf.xml' 2025-12-13T03:59:55,033 adding 'galaxy/datatypes/display_applications/xsd/geda.xsd' 2025-12-13T03:59:55,034 adding 'galaxy/datatypes/util/__init__.py' 2025-12-13T03:59:55,036 adding 'galaxy/datatypes/util/generic_util.py' 2025-12-13T03:59:55,038 adding 'galaxy/datatypes/util/gff_util.py' 2025-12-13T03:59:55,043 adding 'galaxy/datatypes/util/maf_utilities.py' 2025-12-13T03:59:55,095 adding 'galaxy/model/__init__.py' 2025-12-13T03:59:55,101 adding 'galaxy/model/base.py' 2025-12-13T03:59:55,103 adding 'galaxy/model/custom_types.py' 2025-12-13T03:59:55,104 adding 'galaxy/model/database_heartbeat.py' 2025-12-13T03:59:55,106 adding 'galaxy/model/database_object_names.py' 2025-12-13T03:59:55,107 adding 'galaxy/model/database_utils.py' 2025-12-13T03:59:55,110 adding 'galaxy/model/deferred.py' 2025-12-13T03:59:55,112 adding 'galaxy/model/dereference.py' 2025-12-13T03:59:55,113 adding 'galaxy/model/index_filter_util.py' 2025-12-13T03:59:55,115 adding 'galaxy/model/item_attrs.py' 2025-12-13T03:59:55,116 adding 'galaxy/model/mapping.py' 2025-12-13T03:59:55,120 adding 'galaxy/model/metadata.py' 2025-12-13T03:59:55,121 adding 'galaxy/model/none_like.py' 2025-12-13T03:59:55,122 adding 'galaxy/model/scoped_session.py' 2025-12-13T03:59:55,133 adding 'galaxy/model/security.py' 2025-12-13T03:59:55,136 adding 'galaxy/model/tags.py' 2025-12-13T03:59:55,138 adding 'galaxy/model/dataset_collections/__init__.py' 2025-12-13T03:59:55,139 adding 'galaxy/model/dataset_collections/adapters.py' 2025-12-13T03:59:55,141 adding 'galaxy/model/dataset_collections/auto_identifiers.py' 2025-12-13T03:59:55,142 adding 'galaxy/model/dataset_collections/auto_pairing.py' 2025-12-13T03:59:55,144 adding 'galaxy/model/dataset_collections/builder.py' 2025-12-13T03:59:55,145 adding 'galaxy/model/dataset_collections/matching.py' 2025-12-13T03:59:55,146 adding 'galaxy/model/dataset_collections/query.py' 2025-12-13T03:59:55,148 adding 'galaxy/model/dataset_collections/registry.py' 2025-12-13T03:59:55,149 adding 'galaxy/model/dataset_collections/rule_target_columns.py' 2025-12-13T03:59:55,151 adding 'galaxy/model/dataset_collections/rule_target_models.py' 2025-12-13T03:59:55,152 adding 'galaxy/model/dataset_collections/rule_targets.yml' 2025-12-13T03:59:55,154 adding 'galaxy/model/dataset_collections/structure.py' 2025-12-13T03:59:55,155 adding 'galaxy/model/dataset_collections/subcollections.py' 2025-12-13T03:59:55,157 adding 'galaxy/model/dataset_collections/type_description.py' 2025-12-13T03:59:55,159 adding 'galaxy/model/dataset_collections/workbook_util.py' 2025-12-13T03:59:55,161 adding 'galaxy/model/dataset_collections/types/__init__.py' 2025-12-13T03:59:55,162 adding 'galaxy/model/dataset_collections/types/list.py' 2025-12-13T03:59:55,163 adding 'galaxy/model/dataset_collections/types/paired.py' 2025-12-13T03:59:55,164 adding 'galaxy/model/dataset_collections/types/paired_or_unpaired.py' 2025-12-13T03:59:55,166 adding 'galaxy/model/dataset_collections/types/record.py' 2025-12-13T03:59:55,167 adding 'galaxy/model/dataset_collections/types/sample_sheet.py' 2025-12-13T03:59:55,168 adding 'galaxy/model/dataset_collections/types/sample_sheet_util.py' 2025-12-13T03:59:55,171 adding 'galaxy/model/dataset_collections/types/sample_sheet_workbook.py' 2025-12-13T03:59:55,173 adding 'galaxy/model/dataset_collections/types/semantics.py' 2025-12-13T03:59:55,175 adding 'galaxy/model/db/__init__.py' 2025-12-13T03:59:55,176 adding 'galaxy/model/db/library.py' 2025-12-13T03:59:55,177 adding 'galaxy/model/db/role.py' 2025-12-13T03:59:55,179 adding 'galaxy/model/db/user.py' 2025-12-13T03:59:55,181 adding 'galaxy/model/migrations/README.md' 2025-12-13T03:59:55,183 adding 'galaxy/model/migrations/__init__.py' 2025-12-13T03:59:55,184 adding 'galaxy/model/migrations/alembic.ini' 2025-12-13T03:59:55,186 adding 'galaxy/model/migrations/base.py' 2025-12-13T03:59:55,188 adding 'galaxy/model/migrations/dbscript.py' 2025-12-13T03:59:55,189 adding 'galaxy/model/migrations/exceptions.py' 2025-12-13T03:59:55,191 adding 'galaxy/model/migrations/scripts.py' 2025-12-13T03:59:55,193 adding 'galaxy/model/migrations/util.py' 2025-12-13T03:59:55,195 adding 'galaxy/model/migrations/alembic/env.py' 2025-12-13T03:59:55,196 adding 'galaxy/model/migrations/alembic/script.py.mako' 2025-12-13T03:59:55,200 adding 'galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py' 2025-12-13T03:59:55,201 adding 'galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py' 2025-12-13T03:59:55,203 adding 'galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py' 2025-12-13T03:59:55,204 adding 'galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py' 2025-12-13T03:59:55,205 adding 'galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py' 2025-12-13T03:59:55,206 adding 'galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py' 2025-12-13T03:59:55,208 adding 'galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py' 2025-12-13T03:59:55,209 adding 'galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py' 2025-12-13T03:59:55,210 adding 'galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py' 2025-12-13T03:59:55,211 adding 'galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py' 2025-12-13T03:59:55,212 adding 'galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py' 2025-12-13T03:59:55,214 adding 'galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py' 2025-12-13T03:59:55,215 adding 'galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py' 2025-12-13T03:59:55,216 adding 'galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py' 2025-12-13T03:59:55,217 adding 'galaxy/model/migrations/alembic/versions_gxy/338d0e5deb03_add_cleanup_event_user_assoc_table.py' 2025-12-13T03:59:55,219 adding 'galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py' 2025-12-13T03:59:55,220 adding 'galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py' 2025-12-13T03:59:55,221 adding 'galaxy/model/migrations/alembic/versions_gxy/3af58c192752_implement_sample_sheets.py' 2025-12-13T03:59:55,222 adding 'galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py' 2025-12-13T03:59:55,223 adding 'galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py' 2025-12-13T03:59:55,224 adding 'galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py' 2025-12-13T03:59:55,226 adding 'galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py' 2025-12-13T03:59:55,227 adding 'galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py' 2025-12-13T03:59:55,228 adding 'galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py' 2025-12-13T03:59:55,229 adding 'galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py' 2025-12-13T03:59:55,230 adding 'galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py' 2025-12-13T03:59:55,232 adding 'galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py' 2025-12-13T03:59:55,233 adding 'galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py' 2025-12-13T03:59:55,234 adding 'galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py' 2025-12-13T03:59:55,236 adding 'galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py' 2025-12-13T03:59:55,237 adding 'galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py' 2025-12-13T03:59:55,238 adding 'galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py' 2025-12-13T03:59:55,239 adding 'galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py' 2025-12-13T03:59:55,241 adding 'galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py' 2025-12-13T03:59:55,242 adding 'galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py' 2025-12-13T03:59:55,243 adding 'galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py' 2025-12-13T03:59:55,244 adding 'galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py' 2025-12-13T03:59:55,246 adding 'galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py' 2025-12-13T03:59:55,247 adding 'galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py' 2025-12-13T03:59:55,248 adding 'galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py' 2025-12-13T03:59:55,249 adding 'galaxy/model/migrations/alembic/versions_gxy/c0959ad462b2_add_tool_id_and_tool_version_to_tool_.py' 2025-12-13T03:59:55,250 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py' 2025-12-13T03:59:55,252 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py' 2025-12-13T03:59:55,253 adding 'galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py' 2025-12-13T03:59:55,254 adding 'galaxy/model/migrations/alembic/versions_gxy/c44ae5f3dcf1_merge_25_0_into_dev.py' 2025-12-13T03:59:55,255 adding 'galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py' 2025-12-13T03:59:55,257 adding 'galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py' 2025-12-13T03:59:55,258 adding 'galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py' 2025-12-13T03:59:55,259 adding 'galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py' 2025-12-13T03:59:55,261 adding 'galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py' 2025-12-13T03:59:55,262 adding 'galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py' 2025-12-13T03:59:55,263 adding 'galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py' 2025-12-13T03:59:55,264 adding 'galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py' 2025-12-13T03:59:55,265 adding 'galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py' 2025-12-13T03:59:55,267 adding 'galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py' 2025-12-13T03:59:55,268 adding 'galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py' 2025-12-13T03:59:55,269 adding 'galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py' 2025-12-13T03:59:55,270 adding 'galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py' 2025-12-13T03:59:55,272 adding 'galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py' 2025-12-13T03:59:55,273 adding 'galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py' 2025-12-13T03:59:55,274 adding 'galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py' 2025-12-13T03:59:55,275 adding 'galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py' 2025-12-13T03:59:55,277 adding 'galaxy/model/migrations/alembic/versions_gxy/fb16d09348db_dataset_source_requested_transform.py' 2025-12-13T03:59:55,278 adding 'galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py' 2025-12-13T03:59:55,280 adding 'galaxy/model/migrations/data_fixes/__init__.py' 2025-12-13T03:59:55,282 adding 'galaxy/model/migrations/data_fixes/association_table_fixer.py' 2025-12-13T03:59:55,283 adding 'galaxy/model/migrations/data_fixes/user_table_fixer.py' 2025-12-13T03:59:55,285 adding 'galaxy/model/orm/__init__.py' 2025-12-13T03:59:55,287 adding 'galaxy/model/orm/engine_factory.py' 2025-12-13T03:59:55,288 adding 'galaxy/model/orm/now.py' 2025-12-13T03:59:55,289 adding 'galaxy/model/orm/scripts.py' 2025-12-13T03:59:55,291 adding 'galaxy/model/orm/util.py' 2025-12-13T03:59:55,292 adding 'galaxy/model/scripts/__init__.py' 2025-12-13T03:59:55,294 adding 'galaxy/model/scripts/delete_galaxy_sessions.py' 2025-12-13T03:59:55,295 adding 'galaxy/model/scripts/delete_job_metrics.py' 2025-12-13T03:59:55,297 adding 'galaxy/model/scripts/history_table_pruner.py' 2025-12-13T03:59:55,298 adding 'galaxy/model/scripts/prune_history_table.py' 2025-12-13T03:59:55,313 adding 'galaxy/model/store/__init__.py' 2025-12-13T03:59:55,315 adding 'galaxy/model/store/_bco_convert_utils.py' 2025-12-13T03:59:55,317 adding 'galaxy/model/store/build_objects.py' 2025-12-13T03:59:55,322 adding 'galaxy/model/store/discover.py' 2025-12-13T03:59:55,323 adding 'galaxy/model/store/load_objects.py' 2025-12-13T03:59:55,326 adding 'galaxy/model/store/ro_crate_utils.py' 2025-12-13T03:59:55,330 adding 'galaxy/model/tool_shed_install/__init__.py' 2025-12-13T03:59:55,331 adding 'galaxy/model/tool_shed_install/mapping.py' 2025-12-13T03:59:55,332 adding 'galaxy/model/triggers/__init__.py' 2025-12-13T03:59:55,334 adding 'galaxy/model/triggers/update_audit_table.py' 2025-12-13T03:59:55,335 adding 'galaxy/model/unittest_utils/__init__.py' 2025-12-13T03:59:55,337 adding 'galaxy/model/unittest_utils/beaker_testing_utils.py' 2025-12-13T03:59:55,338 adding 'galaxy/model/unittest_utils/data_app.py' 2025-12-13T03:59:55,339 adding 'galaxy/model/unittest_utils/db_helpers.py' 2025-12-13T03:59:55,341 adding 'galaxy/model/unittest_utils/migration_scripts_testing_utils.py' 2025-12-13T03:59:55,343 adding 'galaxy/model/unittest_utils/model_testing_utils.py' 2025-12-13T03:59:55,344 adding 'galaxy/model/unittest_utils/store_fixtures.py' 2025-12-13T03:59:55,345 adding 'galaxy/model/unittest_utils/utils.py' 2025-12-13T03:59:55,348 adding 'galaxy/quota/__init__.py' 2025-12-13T03:59:55,350 adding 'galaxy/quota/_schema.py' 2025-12-13T03:59:55,352 adding 'galaxy/security/__init__.py' 2025-12-13T03:59:55,353 adding 'galaxy/security/idencoding.py' 2025-12-13T03:59:55,356 adding 'galaxy/security/object_wrapper.py' 2025-12-13T03:59:55,357 adding 'galaxy/security/passwords.py' 2025-12-13T03:59:55,358 adding 'galaxy/security/ssh_util.py' 2025-12-13T03:59:55,360 adding 'galaxy/security/validate_user_input.py' 2025-12-13T03:59:55,362 adding 'galaxy/security/vault.py' 2025-12-13T03:59:55,366 adding 'galaxy_data-25.1.dev0.dist-info/licenses/LICENSE' 2025-12-13T03:59:55,373 adding 'galaxy_data-25.1.dev0.dist-info/METADATA' 2025-12-13T03:59:55,374 adding 'galaxy_data-25.1.dev0.dist-info/WHEEL' 2025-12-13T03:59:55,375 adding 'galaxy_data-25.1.dev0.dist-info/entry_points.txt' 2025-12-13T03:59:55,376 adding 'galaxy_data-25.1.dev0.dist-info/top_level.txt' 2025-12-13T03:59:55,383 adding 'galaxy_data-25.1.dev0.dist-info/RECORD' 2025-12-13T03:59:55,398 removing build/bdist.linux-armv7l/wheel 2025-12-13T03:59:55,588 Building wheel for galaxy-data (pyproject.toml): finished with status 'done' 2025-12-13T03:59:55,613 Created wheel for galaxy-data: filename=galaxy_data-25.1.dev0-py3-none-any.whl size=783933 sha256=2a1604b928618f67ed9d9798dd64048cf2a46c3d1575d6f146109a6ab8029917 2025-12-13T03:59:55,614 Stored in directory: /tmp/pip-ephem-wheel-cache-dgvp64p_/wheels/c4/27/2e/a973b586cfaf146db9d08a1c1c776f3b54d4ebc0ca192d9324 2025-12-13T03:59:55,650 Successfully built galaxy-data 2025-12-13T03:59:55,681 Removed build tracker: '/tmp/pip-build-tracker-337_qq3x'