2025-12-13T04:00:35,941 Created temporary directory: /tmp/pip-ephem-wheel-cache-jq8y1vvl 2025-12-13T04:00:35,942 Created temporary directory: /tmp/pip-build-tracker-dwp_dk8z 2025-12-13T04:00:35,943 Initialized build tracking at /tmp/pip-build-tracker-dwp_dk8z 2025-12-13T04:00:35,944 Created build tracker: /tmp/pip-build-tracker-dwp_dk8z 2025-12-13T04:00:35,944 Entered build tracker: /tmp/pip-build-tracker-dwp_dk8z 2025-12-13T04:00:35,945 Created temporary directory: /tmp/pip-wheel-n1dm6sss 2025-12-13T04:00:35,947 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-13T04:00:35,950 Created temporary directory: /tmp/pip-ephem-wheel-cache-twh9ph4v 2025-12-13T04:00:35,971 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-13T04:00:35,975 2 location(s) to search for versions of galaxy-app: 2025-12-13T04:00:35,975 * https://pypi.org/simple/galaxy-app/ 2025-12-13T04:00:35,975 * https://www.piwheels.org/simple/galaxy-app/ 2025-12-13T04:00:35,975 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2025-12-13T04:00:35,976 Getting page https://pypi.org/simple/galaxy-app/ 2025-12-13T04:00:35,978 Found index url https://pypi.org/simple 2025-12-13T04:00:36,193 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2025-12-13T04:00:36,207 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.5.0 2025-12-13T04:00:36,208 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0e/45/8db530ec699e0de1e6307285126e8bba3dca8ffe575e9994b0c56aa01e35/galaxy_app-20.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2025-12-13T04:00:36,208 Found link https://files.pythonhosted.org/packages/39/7b/ed47204e833f922db4fc7e96d8de33650a57856999b95145a9e5414270b1/galaxy-app-20.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 20.9.0 2025-12-13T04:00:36,209 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/6e/cd07342b2790bc4ec0f3d03eb559fdee76513d00657c2897ad5517615704/galaxy_app-20.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2025-12-13T04:00:36,210 Found link https://files.pythonhosted.org/packages/bb/d4/bbe8b30220b07000291c571508565a6b2c803c8b3580f4edb50dec7dfb25/galaxy-app-21.9.0.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 21.9.0 2025-12-13T04:00:36,211 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2a/c8/f3c20efbe004b6968ac2f89cfc60e77d96b0a45844d864f7d4f84e985b6e/galaxy_app-21.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2025-12-13T04:00:36,211 Found link https://files.pythonhosted.org/packages/ac/8b/73350a0f611102667eabde41fa8bcd6ffb49ed5a726f6077366504f8bb42/galaxy-app-22.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/), version: 22.1.1 2025-12-13T04:00:36,212 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e4/40/ca62a2cd45b022310bd0d4ce05f5ed3d59e8f994d19e31c3fc0410da4b45/galaxy_app-22.1.1-py2.py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) 2025-12-13T04:00:36,213 Found link https://files.pythonhosted.org/packages/89/47/4d9cc66c90213feb9f0a8e10fcea2ab93f66d90f289f5e0d72ef6dafcab9/galaxy-app-23.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.1 2025-12-13T04:00:36,214 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d6/1d/9c9721f6bdcb3de36c2f9946af6639696d33f43a3934d9edd95f00d349e5/galaxy_app-23.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,215 Found link https://files.pythonhosted.org/packages/fc/5e/993fc4df93a146b8e11719fd70d92dddf4b5a2e14c2a5006ad5c7320857e/galaxy-app-23.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.2 2025-12-13T04:00:36,216 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7c/cf/3e8752a5c5858f6a096a04d57f31653c5fdbdcb0740ec4f00d29db037a65/galaxy_app-23.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,217 Found link https://files.pythonhosted.org/packages/86/9a/1c845471521630df79226096bed68473fe2e355985ac4c2830ee0f2d6420/galaxy-app-23.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.3 2025-12-13T04:00:36,217 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/08/19/3c5252502bf8984448c6713825aea0efb9ba4de747eb073568b2679afc94/galaxy_app-23.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,218 Found link https://files.pythonhosted.org/packages/7b/69/05dfb348db46268dfd2096cea8f42d37bb0d5f6e55202f684607fc4fa1e2/galaxy-app-23.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.4 2025-12-13T04:00:36,219 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/12/d3/cd3e8e4b280236df34705ac5745d6cb657593b9b6064e6980df863dbfba0/galaxy_app-23.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,219 Found link https://files.pythonhosted.org/packages/9f/d5/eca55f6fa4a9147f5b72dd6a593a0c36280f2bc3a5bf95d95cb4112f92a8/galaxy-app-23.0.5.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.5 2025-12-13T04:00:36,220 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d4/26/d168ceb65d4c9d6ef67c88f061d8eb88d7e845a2f10f10b7d1270d5acb37/galaxy_app-23.0.5-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,221 Found link https://files.pythonhosted.org/packages/86/9e/41165df0dabc7ff036d7a2daa00fe555770e7dbfb1e208f2847d756be48c/galaxy-app-23.0.6.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.0.6 2025-12-13T04:00:36,222 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e8/73/abf8595c6097c3b6ffbe95cd4cdbf404a5cf6ad7b292545cc4d1cb87d4a0/galaxy_app-23.0.6-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,223 Found link https://files.pythonhosted.org/packages/41/07/083718b816053a9f97e5e678ac9bed14b31d3a224026170e58be13f37fba/galaxy-app-23.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.dev0 2025-12-13T04:00:36,224 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/7a/89/50a4575db66b638bee6f241f902f556eaa27855d7f0fd3323551bdb09f5d/galaxy_app-23.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,224 Found link https://files.pythonhosted.org/packages/96/67/be959ad3f838e23eec1821ba494202846a79ed3add7f603feab6a46e21f3/galaxy-app-23.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.1 2025-12-13T04:00:36,225 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c8/f7/a84fe8d48fb96f5e96981ca3f60491f856efa4f2463722fa75ad8dcec7a7/galaxy_app-23.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,226 Found link https://files.pythonhosted.org/packages/ad/a6/798ae0b3aa469f382a3b4350fc394ebe60559177717140e48f97ae81d4a3/galaxy-app-23.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.2 2025-12-13T04:00:36,227 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/54/ef/8264cbce6eca0cd434001d62c838cd4798aa478a6af7879b83299c28193d/galaxy_app-23.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,228 Found link https://files.pythonhosted.org/packages/26/ba/0995031cda92688ec41ab4ad0cc11b148fd5caecf21e414928464bea82f8/galaxy-app-23.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.3 2025-12-13T04:00:36,229 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/03/0f/747509841f1baad002247bb2956344ce1ebb9703ab941c149f5456b32c31/galaxy_app-23.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,229 Found link https://files.pythonhosted.org/packages/de/63/8be8d20cf1c913da72f9b69af53b711dccc0a998718c2abf93349bdf5301/galaxy-app-23.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.1.4 2025-12-13T04:00:36,230 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/60/97/43d48dc8d2d332faab8a4439b68c7cbbd528f7b9d48c8a0092d60cc5124d/galaxy_app-23.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,231 Found link https://files.pythonhosted.org/packages/2f/6c/b024d7c86132a8926709338c49bef02ac75821d997e60030744cf4e65ed0/galaxy-app-23.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7), version: 23.2.1 2025-12-13T04:00:36,231 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/b9/89/c6d435aa81c1e8bfc9a11ffe2ce1212d1f7251be748aa684ad150a337b25/galaxy_app-23.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,232 Found link https://files.pythonhosted.org/packages/10/8a/8722621711150c5522028ae4f5ecd1a7e12cd7e430a6b9cf2f8f4d1ff409/galaxy-app-24.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.0 2025-12-13T04:00:36,233 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/23/72/37370b092b6ea34491efdb854990cba6068b4a3b6eef26947c2ab1274f69/galaxy_app-24.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,234 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/8a/2b/e66673f317e13ca426074d88f5180a2836f281f3c292275db2fdb44d15fe/galaxy_app-24.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,235 Found link https://files.pythonhosted.org/packages/1b/a9/861c3fdb557700065a00872db1752b8f4797de95325630397f96c99146bd/galaxy_app-24.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.1 2025-12-13T04:00:36,235 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/0a/a5/2c0d3d616a72e3ee35b36a3aa9d449b8c174fc181a993c01d4078e6443b1/galaxy_app-24.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,236 Found link https://files.pythonhosted.org/packages/31/53/8f944700770dbafae351efe5557d476c3ad478f8dddb0cf8c0e5d0269bd8/galaxy_app-24.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.2 2025-12-13T04:00:36,237 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/e7/44/e5c37f7ebac240ff67705b771890f8741a1f3ab6d6096e4413f44c690230/galaxy_app-24.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,238 Found link https://files.pythonhosted.org/packages/b6/50/b2598fe6756e78bbb2d4d816b17700ebbda5a18099a99676d7a882b23973/galaxy_app-24.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.0.3 2025-12-13T04:00:36,239 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/89/19/1e93f18d2569aa1adde55049c082b526dec915ec5fd97c2ee1a00bd27230/galaxy_app-24.1.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,240 Found link https://files.pythonhosted.org/packages/cc/bf/be693f715cd1f196126e60b1a1b1b355a3297e210b05f17579beef281993/galaxy_app-24.1.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.1 2025-12-13T04:00:36,240 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/d8/c1/b6cec59ac7108dcb29f1c5756a78d971843e5cfecd20bef05d1227cf7734/galaxy_app-24.1.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,241 Found link https://files.pythonhosted.org/packages/81/85/d832b99803e29032ecc4a8ebd7e51bf9a8dcb74fb59b4ef7f0e11afd24ea/galaxy_app-24.1.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.2 2025-12-13T04:00:36,242 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c9/64/fd91cb66e72c0944bbb6749845fbac0dcafbe7d06817cc9f6d589542272c/galaxy_app-24.1.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,242 Found link https://files.pythonhosted.org/packages/3f/f9/388b4f0a3ff32d17ebfe506b940f4579d6027f7b71d40f2f9c4c3c5b707f/galaxy_app-24.1.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.3 2025-12-13T04:00:36,243 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/74/27/ccfa155f5e9a636ffe6fb96315d5bc160a6d4bc3d6896ed957b4e5c90db1/galaxy_app-24.1.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,244 Found link https://files.pythonhosted.org/packages/89/6f/d18408cc47a4878e9ff3eb3cc00d73790363f87ae628bbba7292fb11114c/galaxy_app-24.1.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.1.4 2025-12-13T04:00:36,244 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/66/b7/6a65ad0e20898593d3f4d48ccf7505761b6c6e3f9f347eef305818130a62/galaxy_app-24.2.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,245 Found link https://files.pythonhosted.org/packages/96/89/cfdfa35327677a6e58d7d8ef87f692a4f5e302129514e509d4b82ca79c40/galaxy_app-24.2.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.0 2025-12-13T04:00:36,246 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/64/d4/11ad7dd636965631c14d0a6778b36bcd6fd307e117383fa312156deb2c00/galaxy_app-24.2.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,247 Found link https://files.pythonhosted.org/packages/f6/b2/936c1e4204c79c17c1580eeb094193faf78de1940aa022b71b443d8368d7/galaxy_app-24.2.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.1 2025-12-13T04:00:36,248 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/55/34/0090029fccb2f6337b2ab37bbdc9d7e6bf7f6f6a75a936cbb8bf11228589/galaxy_app-24.2.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,248 Found link https://files.pythonhosted.org/packages/88/db/d924fca9afc8e5c39f5f7b8ce140ac5e4ee059e1b30b964c73237cdc22c5/galaxy_app-24.2.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.2 2025-12-13T04:00:36,249 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/2c/af/1a619ccd5253e4b74d5c3cb5be010a12903b95d149400200e7e33f23d60a/galaxy_app-24.2.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,250 Found link https://files.pythonhosted.org/packages/a0/8c/97e2df423aa9000df8cf2204403565032fe567e8fd8b010dd1f2a26175aa/galaxy_app-24.2.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.3 2025-12-13T04:00:36,251 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/4e/3c/9c67b8f756a8e58d99a515e0f188aed271f225a89f8866f6719c0aa7189b/galaxy_app-24.2.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,252 Found link https://files.pythonhosted.org/packages/4e/3b/ab0a14874d86144bf33681164f1f398c0a2f09c141f672bad64030497186/galaxy_app-24.2.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.8), version: 24.2.4 2025-12-13T04:00:36,252 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/21/c0/83ca0cee2dd293e1a8869d2ac651ceac0d628885d23f61445ba85a97a83a/galaxy_app-25.0.0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,253 Found link https://files.pythonhosted.org/packages/48/3c/a7a6b46d66a7df9d5cd50fd41f917b1b253cb6142fb5518aa08bb4d4c219/galaxy_app-25.0.0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.0 2025-12-13T04:00:36,254 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/c0/79/e094854938d7876ca802171004906037e87f0917579e98d92e640e56d87d/galaxy_app-25.0.1-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,254 Found link https://files.pythonhosted.org/packages/0c/5f/ce1d6de7695af88af142e23571c54fae681092a0dfa38edea5046682e67a/galaxy_app-25.0.1.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.1 2025-12-13T04:00:36,255 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/9a/54/07919f089225f319e85643152c58d577fc01d0e568cb9110cf434ca5b4ee/galaxy_app-25.0.2-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,256 Found link https://files.pythonhosted.org/packages/53/9c/8d5cdb3013e508ef0c76b277ba5e1695e4d430bd04156f97977cb7895488/galaxy_app-25.0.2.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.2 2025-12-13T04:00:36,257 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/ff/e5/d8a099afeecad5902fcb02320137c1abc050befa10d53e45861d7f984aaf/galaxy_app-25.0.3-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,257 Found link https://files.pythonhosted.org/packages/73/3e/df92e253e067efb5d36c0b31c0adc0cff9d417cebe10e87c17df702f92a9/galaxy_app-25.0.3.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.3 2025-12-13T04:00:36,258 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/79/de/90757d51467b4fb3834f2fb2ebf9781d28060fe19aec53465216c01f606b/galaxy_app-25.0.4-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,259 Found link https://files.pythonhosted.org/packages/66/ad/5c2f9df1f257e9630a000bb154271e4d681f2b90bec2bd242782e127fcdf/galaxy_app-25.0.4.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.0.4 2025-12-13T04:00:36,260 Skipping link: No binaries permitted for galaxy-app: https://files.pythonhosted.org/packages/cb/4d/fa2a56f4958bf22a88998a1ab0d85c0d78082956b921eb6f0559f943d373/galaxy_app-25.1.dev0-py3-none-any.whl (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,261 Found link https://files.pythonhosted.org/packages/84/c1/ad38ac89ae8245180b76113b4c3086dd4da22d4094e752fb5a1f9fba8425/galaxy_app-25.1.dev0.tar.gz (from https://pypi.org/simple/galaxy-app/) (requires-python:>=3.9), version: 25.1.dev0 2025-12-13T04:00:36,262 Fetching project page and analyzing links: https://www.piwheels.org/simple/galaxy-app/ 2025-12-13T04:00:36,262 Getting page https://www.piwheels.org/simple/galaxy-app/ 2025-12-13T04:00:36,264 Found index url https://www.piwheels.org/simple 2025-12-13T04:00:36,425 Fetched page https://www.piwheels.org/simple/galaxy-app/ as text/html 2025-12-13T04:00:36,434 Skipping link: No binaries permitted for galaxy-app: https://www.piwheels.org/simple/galaxy-app/galaxy_app-25.0.4-py3-none-any.whl#sha256=40c9bde9c5eb59f49ac82777c9bede1957b6314d53817cd0f36aa3b06711c6c5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,435 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.3-py3-none-any.whl#sha256=dda69dddcadfe72dd1cbe1bf11446f4b3570ebdceb35e31de9c036bc7bdd22d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,435 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.2-py3-none-any.whl#sha256=1e3f189cee180e2fb5873cfebb1a4a809f2ee29b3ab97d58f8dd4cec10c58f88 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,436 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.1-py3-none-any.whl#sha256=db65704931391b255be6095318fcea22959466ef8c965457afd4c1772a310ce2 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,436 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-25.0.0-py3-none-any.whl#sha256=cd1b1be2caf5332d4378212d6ca6e225b967ea44c56934a31156ebb75a2d3bea (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.9) 2025-12-13T04:00:36,437 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.4-py3-none-any.whl#sha256=b96734c33f37549375a1182d6741d5e83f6a48278f7bed5f8e0787ebcbf34cdd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,437 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.3-py3-none-any.whl#sha256=373716c96daa1d0dc823f50d551219ca741bf4aecfa380db3ef347187be5a00a (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,438 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.2-py3-none-any.whl#sha256=36ba4ccf54fdb4c04dc46adb0f70984791249b66910bcbf8b2a0ca41df63d39c (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,438 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.1-py3-none-any.whl#sha256=4a8c43f9cae74af9636804938246b7ef0488620cdcce169c330249be5193bb0b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,439 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.2.0-py3-none-any.whl#sha256=64971bd4e8876dc59ecb49efbee5fea530d88dcbaadaa1dead7714ced5380189 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,439 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.4-py3-none-any.whl#sha256=cc8b47f50e7e1ef64ad4be5ba8c37c941d8b01fc3f4960be4c54f218d986df92 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,440 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.3-py3-none-any.whl#sha256=f54a29e6e7a2f1094b4d768dbf9fee039da117abc226a3dc03b567a7f28cdf8e (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,441 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.2-py3-none-any.whl#sha256=3e8e6104af6caf8665b767c6618c412a28d6d45e5cf81f0e5df37af4a9f20c4a (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,441 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.1.1-py3-none-any.whl#sha256=be8d7134be48e860df0cb0dbe29dc847a0845af168831211d5c387c5b4439a0e (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,442 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.3-py3-none-any.whl#sha256=485bacde600c1e704bf96d444683f8d254f03dcad9d59cbecc6ef6434be032f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,442 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.2-py3-none-any.whl#sha256=c42cadb7f2e6473f37ca6a906c35ab3eccaa056126134a7519406842ef57b63f (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,443 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.1-py3-none-any.whl#sha256=a203d2b0535783470077aeef294bcf5ef0664ea223202a97c46f96899a1d723b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,443 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-24.0.0-py3-none-any.whl#sha256=2b9d3bce166e31abb2ffc8c574fc111268b8f1a67dea6324c88de325d8b110d4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.8) 2025-12-13T04:00:36,444 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.2.1-py3-none-any.whl#sha256=e37a8c0551dded98be57102c74e99152b15aa0369a4b28287c95e0b0e1b0c7f9 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,444 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.4-py3-none-any.whl#sha256=a0d156aebf5163d1c632ec4c512d86f60cd8848ff63bfdee5e72f0b2b1ea9942 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,445 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.3-py3-none-any.whl#sha256=31efbe6b15793cf934e6d3fa0acf8fa040a1110373f2af602c1384f2fddc61a5 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,445 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.2-py3-none-any.whl#sha256=af60799c6e1c91da02a7b4d1dc70fa1285c49cbb474f15dad9f74fc50ef0d214 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,446 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.1-py3-none-any.whl#sha256=c2a889aa873a367630a84277ea40ae425c8ccfb9d29770e60ed120e11f16287b (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,447 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.1.dev0-py3-none-any.whl#sha256=c9198ae7cb3065b124471a6e7c9b40207d05b9dd860896249bd107558b62eabd (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,447 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.6-py3-none-any.whl#sha256=2c529481de193d71a8c059551d9713d602fa4e7817856a393fc657711fd26a80 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,448 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,448 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,449 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,449 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,450 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2025-12-13T04:00:36,450 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2025-12-13T04:00:36,451 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2025-12-13T04:00:36,451 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2025-12-13T04:00:36,452 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2025-12-13T04:00:36,475 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2025-12-13T04:00:36,493 Collecting galaxy-app==25.1.dev0 2025-12-13T04:00:36,495 Created temporary directory: /tmp/pip-unpack-mxxrdomb 2025-12-13T04:00:36,630 Downloading galaxy_app-25.1.dev0.tar.gz (1.3 MB) 2025-12-13T04:00:38,310 Added galaxy-app==25.1.dev0 from https://files.pythonhosted.org/packages/84/c1/ad38ac89ae8245180b76113b4c3086dd4da22d4094e752fb5a1f9fba8425/galaxy_app-25.1.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-dwp_dk8z' 2025-12-13T04:00:38,314 Created temporary directory: /tmp/pip-build-env-03ysvrff 2025-12-13T04:00:38,320 Installing build dependencies: started 2025-12-13T04:00:38,322 Running command pip subprocess to install build dependencies 2025-12-13T04:00:39,445 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-13T04:00:40,039 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-13T04:00:40,062 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-13T04:00:41,766 Collecting setuptools 2025-12-13T04:00:41,944 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-13T04:00:44,914 Installing collected packages: setuptools 2025-12-13T04:00:48,431 Successfully installed setuptools-80.9.0 2025-12-13T04:00:48,698 Installing build dependencies: finished with status 'done' 2025-12-13T04:00:48,705 Getting requirements to build wheel: started 2025-12-13T04:00:48,706 Running command Getting requirements to build wheel 2025-12-13T04:00:49,306 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-13T04:00:49,306 !! 2025-12-13T04:00:49,307 ******************************************************************************** 2025-12-13T04:00:49,308 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-13T04:00:49,309 License :: OSI Approved :: Academic Free License (AFL) 2025-12-13T04:00:49,309 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-13T04:00:49,310 ******************************************************************************** 2025-12-13T04:00:49,311 !! 2025-12-13T04:00:49,311 self._finalize_license_expression() 2025-12-13T04:00:49,387 running egg_info 2025-12-13T04:00:49,393 writing galaxy_app.egg-info/PKG-INFO 2025-12-13T04:00:49,405 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2025-12-13T04:00:49,407 writing entry points to galaxy_app.egg-info/entry_points.txt 2025-12-13T04:00:49,409 writing requirements to galaxy_app.egg-info/requires.txt 2025-12-13T04:00:49,410 writing top-level names to galaxy_app.egg-info/top_level.txt 2025-12-13T04:00:49,505 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2025-12-13T04:00:49,576 reading manifest template 'MANIFEST.in' 2025-12-13T04:00:50,094 adding license file 'LICENSE' 2025-12-13T04:00:50,125 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2025-12-13T04:00:50,217 Getting requirements to build wheel: finished with status 'done' 2025-12-13T04:00:50,221 Created temporary directory: /tmp/pip-modern-metadata-u72u89yi 2025-12-13T04:00:50,223 Preparing metadata (pyproject.toml): started 2025-12-13T04:00:50,224 Running command Preparing metadata (pyproject.toml) 2025-12-13T04:00:50,787 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-13T04:00:50,787 !! 2025-12-13T04:00:50,788 ******************************************************************************** 2025-12-13T04:00:50,789 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-13T04:00:50,790 License :: OSI Approved :: Academic Free License (AFL) 2025-12-13T04:00:50,791 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-13T04:00:50,792 ******************************************************************************** 2025-12-13T04:00:50,793 !! 2025-12-13T04:00:50,793 self._finalize_license_expression() 2025-12-13T04:00:50,813 running dist_info 2025-12-13T04:00:50,825 creating /tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info 2025-12-13T04:00:50,826 writing /tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/PKG-INFO 2025-12-13T04:00:50,837 writing dependency_links to /tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/dependency_links.txt 2025-12-13T04:00:50,839 writing entry points to /tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/entry_points.txt 2025-12-13T04:00:50,841 writing requirements to /tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/requires.txt 2025-12-13T04:00:50,842 writing top-level names to /tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/top_level.txt 2025-12-13T04:00:50,843 writing manifest file '/tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/SOURCES.txt' 2025-12-13T04:00:50,924 reading manifest file '/tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/SOURCES.txt' 2025-12-13T04:00:50,927 reading manifest template 'MANIFEST.in' 2025-12-13T04:00:51,415 adding license file 'LICENSE' 2025-12-13T04:00:51,438 writing manifest file '/tmp/pip-modern-metadata-u72u89yi/galaxy_app.egg-info/SOURCES.txt' 2025-12-13T04:00:51,440 creating '/tmp/pip-modern-metadata-u72u89yi/galaxy_app-25.1.dev0.dist-info' 2025-12-13T04:00:51,578 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-13T04:00:51,593 Source in /tmp/pip-wheel-n1dm6sss/galaxy-app_64a987710f8843959640dc25c4286788 has version 25.1.dev0, which satisfies requirement galaxy-app==25.1.dev0 from https://files.pythonhosted.org/packages/84/c1/ad38ac89ae8245180b76113b4c3086dd4da22d4094e752fb5a1f9fba8425/galaxy_app-25.1.dev0.tar.gz 2025-12-13T04:00:51,594 Removed galaxy-app==25.1.dev0 from https://files.pythonhosted.org/packages/84/c1/ad38ac89ae8245180b76113b4c3086dd4da22d4094e752fb5a1f9fba8425/galaxy_app-25.1.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-dwp_dk8z' 2025-12-13T04:00:51,621 Created temporary directory: /tmp/pip-unpack-8mvw48m6 2025-12-13T04:00:51,621 Building wheels for collected packages: galaxy-app 2025-12-13T04:00:51,625 Created temporary directory: /tmp/pip-wheel-1bf0mcrd 2025-12-13T04:00:51,626 Destination directory: /tmp/pip-wheel-1bf0mcrd 2025-12-13T04:00:51,628 Building wheel for galaxy-app (pyproject.toml): started 2025-12-13T04:00:51,629 Running command Building wheel for galaxy-app (pyproject.toml) 2025-12-13T04:00:52,220 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-13T04:00:52,220 !! 2025-12-13T04:00:52,221 ******************************************************************************** 2025-12-13T04:00:52,221 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-13T04:00:52,222 License :: OSI Approved :: Academic Free License (AFL) 2025-12-13T04:00:52,224 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-13T04:00:52,224 ******************************************************************************** 2025-12-13T04:00:52,225 !! 2025-12-13T04:00:52,226 self._finalize_license_expression() 2025-12-13T04:00:52,250 running bdist_wheel 2025-12-13T04:00:52,281 running build 2025-12-13T04:00:52,282 running build_py 2025-12-13T04:00:52,291 creating build/lib/galaxy 2025-12-13T04:00:52,294 copying galaxy/queues.py -> build/lib/galaxy 2025-12-13T04:00:52,296 copying galaxy/di.py -> build/lib/galaxy 2025-12-13T04:00:52,297 copying galaxy/structured_app.py -> build/lib/galaxy 2025-12-13T04:00:52,300 copying galaxy/app.py -> build/lib/galaxy 2025-12-13T04:00:52,303 copying galaxy/__init__.py -> build/lib/galaxy 2025-12-13T04:00:52,305 copying galaxy/config_watchers.py -> build/lib/galaxy 2025-12-13T04:00:52,307 copying galaxy/main_config.py -> build/lib/galaxy 2025-12-13T04:00:52,309 copying galaxy/queue_worker.py -> build/lib/galaxy 2025-12-13T04:00:52,312 copying galaxy/main.py -> build/lib/galaxy 2025-12-13T04:00:52,314 creating build/lib/tool_shed_client 2025-12-13T04:00:52,315 copying tool_shed_client/__init__.py -> build/lib/tool_shed_client 2025-12-13T04:00:52,317 copying tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2025-12-13T04:00:52,319 creating build/lib/galaxy_ext 2025-12-13T04:00:52,320 copying galaxy_ext/__init__.py -> build/lib/galaxy_ext 2025-12-13T04:00:52,323 creating build/lib/galaxy/forms 2025-12-13T04:00:52,324 copying galaxy/forms/__init__.py -> build/lib/galaxy/forms 2025-12-13T04:00:52,325 copying galaxy/forms/forms.py -> build/lib/galaxy/forms 2025-12-13T04:00:52,328 creating build/lib/galaxy/jobs 2025-12-13T04:00:52,329 copying galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,332 copying galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,335 copying galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,339 copying galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,343 copying galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,345 copying galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,347 copying galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,349 copying galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2025-12-13T04:00:52,352 creating build/lib/galaxy/actions 2025-12-13T04:00:52,353 copying galaxy/actions/library.py -> build/lib/galaxy/actions 2025-12-13T04:00:52,355 copying galaxy/actions/__init__.py -> build/lib/galaxy/actions 2025-12-13T04:00:52,357 creating build/lib/galaxy/dependencies 2025-12-13T04:00:52,358 copying galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2025-12-13T04:00:52,361 copying galaxy/dependencies/script.py -> build/lib/galaxy/dependencies 2025-12-13T04:00:52,363 creating build/lib/galaxy/app_unittest_utils 2025-12-13T04:00:52,364 copying galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2025-12-13T04:00:52,366 copying galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2025-12-13T04:00:52,368 copying galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2025-12-13T04:00:52,370 copying galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2025-12-13T04:00:52,372 creating build/lib/galaxy/carbon_emissions 2025-12-13T04:00:52,373 copying galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2025-12-13T04:00:52,376 creating build/lib/galaxy/tools 2025-12-13T04:00:52,377 copying galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,379 copying galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,381 copying galaxy/tools/stock.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,383 copying galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,385 copying galaxy/tools/repositories.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,387 copying galaxy/tools/__init__.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,393 copying galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,394 copying galaxy/tools/execute.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,397 copying galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,400 copying galaxy/tools/execution_helpers.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,401 copying galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,404 copying galaxy/tools/biotools.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,406 copying galaxy/tools/errors.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,408 copying galaxy/tools/cache.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,411 copying galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,414 copying galaxy/tools/_types.py -> build/lib/galaxy/tools 2025-12-13T04:00:52,416 creating build/lib/galaxy/webhooks 2025-12-13T04:00:52,417 copying galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2025-12-13T04:00:52,420 creating build/lib/galaxy/short_term_storage 2025-12-13T04:00:52,421 copying galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2025-12-13T04:00:52,424 creating build/lib/galaxy/work 2025-12-13T04:00:52,425 copying galaxy/work/__init__.py -> build/lib/galaxy/work 2025-12-13T04:00:52,426 copying galaxy/work/context.py -> build/lib/galaxy/work 2025-12-13T04:00:52,429 creating build/lib/galaxy/tool_shed 2025-12-13T04:00:52,430 copying galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2025-12-13T04:00:52,432 copying galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2025-12-13T04:00:52,434 copying galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2025-12-13T04:00:52,436 creating build/lib/galaxy/celery 2025-12-13T04:00:52,437 copying galaxy/celery/base_task.py -> build/lib/galaxy/celery 2025-12-13T04:00:52,440 copying galaxy/celery/__init__.py -> build/lib/galaxy/celery 2025-12-13T04:00:52,442 copying galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2025-12-13T04:00:52,444 copying galaxy/celery/tasks.py -> build/lib/galaxy/celery 2025-12-13T04:00:52,447 creating build/lib/galaxy/workflow 2025-12-13T04:00:52,448 copying galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,450 copying galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,453 copying galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,455 copying galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,457 copying galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,460 copying galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,463 copying galaxy/workflow/run.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,465 copying galaxy/workflow/workflow_parameter_input_definitions.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,467 copying galaxy/workflow/errors.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,469 copying galaxy/workflow/render.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,471 copying galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2025-12-13T04:00:52,476 creating build/lib/galaxy/visualization 2025-12-13T04:00:52,477 copying galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2025-12-13T04:00:52,479 copying galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2025-12-13T04:00:52,482 creating build/lib/galaxy/authnz 2025-12-13T04:00:52,483 copying galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2025-12-13T04:00:52,485 copying galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2025-12-13T04:00:52,488 copying galaxy/authnz/util.py -> build/lib/galaxy/authnz 2025-12-13T04:00:52,490 copying galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2025-12-13T04:00:52,492 copying galaxy/authnz/tapis.py -> build/lib/galaxy/authnz 2025-12-13T04:00:52,494 copying galaxy/authnz/custos_authnz.py -> build/lib/galaxy/authnz 2025-12-13T04:00:52,499 creating build/lib/galaxy/managers 2025-12-13T04:00:52,501 copying galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,503 copying galaxy/managers/sharable.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,506 copying galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,508 copying galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,510 copying galaxy/managers/object_store_instances.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,513 copying galaxy/managers/tools.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,515 copying galaxy/managers/secured.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,518 copying galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,520 copying galaxy/managers/hdas.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,523 copying galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,525 copying galaxy/managers/chat.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,527 copying galaxy/managers/roles.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,529 copying galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,532 copying galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,534 copying galaxy/managers/landing.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,537 copying galaxy/managers/licenses.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,539 copying galaxy/managers/executables.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,541 copying galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,544 copying galaxy/managers/lddas.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,546 copying galaxy/managers/configuration.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,548 copying galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,551 copying galaxy/managers/ratable.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,553 copying galaxy/managers/__init__.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,555 copying galaxy/managers/taggable.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,557 copying galaxy/managers/metrics.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,559 copying galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,561 copying galaxy/managers/context.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,564 copying galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,566 copying galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,568 copying galaxy/managers/users.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,571 copying galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,573 copying galaxy/managers/_config_templates.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,576 copying galaxy/managers/datasets.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,579 copying galaxy/managers/folders.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,582 copying galaxy/managers/notification.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,584 copying galaxy/managers/groups.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,587 copying galaxy/managers/deletable.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,589 copying galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,591 copying galaxy/managers/group_users.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,593 copying galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,596 copying galaxy/managers/histories.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,599 copying galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,601 copying galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,603 copying galaxy/managers/jobs.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,607 copying galaxy/managers/pages.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,610 copying galaxy/managers/genomes.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,612 copying galaxy/managers/file_source_instances.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,615 copying galaxy/managers/forms.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,617 copying galaxy/managers/libraries.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,620 copying galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,622 copying galaxy/managers/tags.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,624 copying galaxy/managers/tasks.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,626 copying galaxy/managers/collections.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,629 copying galaxy/managers/citations.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,632 copying galaxy/managers/quotas.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,634 copying galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,637 copying galaxy/managers/session.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,639 copying galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,641 copying galaxy/managers/workflows.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,645 copying galaxy/managers/base.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,648 copying galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2025-12-13T04:00:52,651 creating build/lib/galaxy/jobs/rules 2025-12-13T04:00:52,652 copying galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2025-12-13T04:00:52,654 creating build/lib/galaxy/jobs/splitters 2025-12-13T04:00:52,655 copying galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2025-12-13T04:00:52,657 copying galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2025-12-13T04:00:52,659 copying galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2025-12-13T04:00:52,661 creating build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,662 copying galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,665 copying galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,668 copying galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,671 copying galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,673 copying galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,676 copying galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,678 copying galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,681 copying galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,682 copying galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,685 copying galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,687 copying galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,689 copying galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,692 copying galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,695 copying galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,698 copying galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2025-12-13T04:00:52,701 creating build/lib/galaxy/jobs/runners/state_handlers 2025-12-13T04:00:52,702 copying galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2025-12-13T04:00:52,704 copying galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2025-12-13T04:00:52,706 copying galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2025-12-13T04:00:52,709 creating build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,710 copying galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,712 copying galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,714 copying galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,715 copying galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,717 copying galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,719 copying galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,721 copying galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,723 copying galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2025-12-13T04:00:52,725 creating build/lib/galaxy/jobs/runners/util/condor 2025-12-13T04:00:52,726 copying galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2025-12-13T04:00:52,729 creating build/lib/galaxy/jobs/runners/util/cli 2025-12-13T04:00:52,730 copying galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2025-12-13T04:00:52,732 copying galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2025-12-13T04:00:52,734 creating build/lib/galaxy/jobs/runners/util/job_script 2025-12-13T04:00:52,735 copying galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2025-12-13T04:00:52,738 creating build/lib/galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:52,739 copying galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:52,741 copying galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:52,743 copying galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:52,745 creating build/lib/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:52,746 copying galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:52,748 copying galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:52,750 copying galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:52,752 copying galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:52,753 copying galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:52,755 copying galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:52,758 creating build/lib/galaxy/tools/imp_exp 2025-12-13T04:00:52,759 copying galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2025-12-13T04:00:52,761 copying galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2025-12-13T04:00:52,763 copying galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2025-12-13T04:00:52,765 creating build/lib/galaxy/tools/data 2025-12-13T04:00:52,766 copying galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2025-12-13T04:00:52,769 creating build/lib/galaxy/tools/util 2025-12-13T04:00:52,770 copying galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2025-12-13T04:00:52,771 copying galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2025-12-13T04:00:52,775 creating build/lib/galaxy/tools/data_manager 2025-12-13T04:00:52,776 copying galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2025-12-13T04:00:52,777 copying galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2025-12-13T04:00:52,780 creating build/lib/galaxy/tools/actions 2025-12-13T04:00:52,781 copying galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,784 copying galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,786 copying galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,788 copying galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,792 copying galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,794 copying galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,796 copying galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,798 copying galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2025-12-13T04:00:52,801 creating build/lib/galaxy/tools/expressions 2025-12-13T04:00:52,802 copying galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2025-12-13T04:00:52,804 copying galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2025-12-13T04:00:52,805 copying galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2025-12-13T04:00:52,807 copying galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2025-12-13T04:00:52,809 creating build/lib/galaxy/tools/search 2025-12-13T04:00:52,811 copying galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2025-12-13T04:00:52,814 creating build/lib/galaxy/tools/fetch 2025-12-13T04:00:52,814 copying galaxy/tools/fetch/workbooks.py -> build/lib/galaxy/tools/fetch 2025-12-13T04:00:52,817 copying galaxy/tools/fetch/__init__.py -> build/lib/galaxy/tools/fetch 2025-12-13T04:00:52,819 creating build/lib/galaxy/tools/error_reports 2025-12-13T04:00:52,820 copying galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2025-12-13T04:00:52,823 creating build/lib/galaxy/tools/filters 2025-12-13T04:00:52,824 copying galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2025-12-13T04:00:52,827 creating build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,828 copying galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,830 copying galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,833 copying galaxy/tools/parameters/options.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,834 copying galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,837 copying galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,839 copying galaxy/tools/parameters/populate_model.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,841 copying galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,843 copying galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,846 copying galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,848 copying galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,851 copying galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,853 copying galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,857 copying galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,859 copying galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,861 copying galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2025-12-13T04:00:52,864 creating build/lib/galaxy/tools/util/galaxyops 2025-12-13T04:00:52,865 copying galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2025-12-13T04:00:52,867 creating build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,868 copying galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,870 copying galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,873 copying galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,875 copying galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,876 copying galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,878 copying galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,880 copying galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,882 copying galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,884 copying galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2025-12-13T04:00:52,887 creating build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,888 copying galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,890 copying galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,892 copying galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,894 copying galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,896 copying galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,898 copying galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,901 copying galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,903 copying galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,906 copying galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,908 copying galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,910 copying galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2025-12-13T04:00:52,913 creating build/lib/galaxy/tool_shed/tools 2025-12-13T04:00:52,914 copying galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2025-12-13T04:00:52,915 copying galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2025-12-13T04:00:52,917 copying galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2025-12-13T04:00:52,920 creating build/lib/galaxy/tool_shed/unittest_utils 2025-12-13T04:00:52,921 copying galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2025-12-13T04:00:52,923 creating build/lib/galaxy/tool_shed/metadata 2025-12-13T04:00:52,924 copying galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2025-12-13T04:00:52,926 copying galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2025-12-13T04:00:52,929 creating build/lib/galaxy/tool_shed/galaxy_install 2025-12-13T04:00:52,930 copying galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2025-12-13T04:00:52,934 copying galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2025-12-13T04:00:52,935 copying galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2025-12-13T04:00:52,938 copying galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2025-12-13T04:00:52,940 copying galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2025-12-13T04:00:52,943 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:52,944 copying galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:52,946 copying galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:52,949 copying galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:52,951 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2025-12-13T04:00:52,952 copying galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2025-12-13T04:00:52,953 copying galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2025-12-13T04:00:52,956 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2025-12-13T04:00:52,957 copying galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2025-12-13T04:00:52,959 copying galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2025-12-13T04:00:52,962 creating build/lib/galaxy/workflow/resources 2025-12-13T04:00:52,963 copying galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2025-12-13T04:00:52,966 creating build/lib/galaxy/workflow/reports 2025-12-13T04:00:52,967 copying galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2025-12-13T04:00:52,969 creating build/lib/galaxy/workflow/schedulers 2025-12-13T04:00:52,970 copying galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2025-12-13T04:00:52,972 copying galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2025-12-13T04:00:52,974 creating build/lib/galaxy/workflow/refactor 2025-12-13T04:00:52,975 copying galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2025-12-13T04:00:52,977 copying galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2025-12-13T04:00:52,980 copying galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2025-12-13T04:00:52,982 creating build/lib/galaxy/workflow/reports/generators 2025-12-13T04:00:52,983 copying galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2025-12-13T04:00:52,985 copying galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2025-12-13T04:00:52,988 creating build/lib/galaxy/visualization/genome 2025-12-13T04:00:52,988 copying galaxy/visualization/genome/__init__.py -> build/lib/galaxy/visualization/genome 2025-12-13T04:00:52,991 creating build/lib/galaxy/visualization/plugins 2025-12-13T04:00:52,992 copying galaxy/visualization/plugins/utils.py -> build/lib/galaxy/visualization/plugins 2025-12-13T04:00:52,994 copying galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2025-12-13T04:00:52,996 copying galaxy/visualization/plugins/datasource_testing.py -> build/lib/galaxy/visualization/plugins 2025-12-13T04:00:52,998 copying galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2025-12-13T04:00:53,001 copying galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2025-12-13T04:00:53,002 copying galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2025-12-13T04:00:53,005 copying galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2025-12-13T04:00:53,007 creating build/lib/galaxy/visualization/data_providers 2025-12-13T04:00:53,008 copying galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2025-12-13T04:00:53,012 copying galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2025-12-13T04:00:53,014 copying galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2025-12-13T04:00:53,016 copying galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2025-12-13T04:00:53,018 copying galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2025-12-13T04:00:53,021 creating build/lib/galaxy/visualization/tracks 2025-12-13T04:00:53,022 copying galaxy/visualization/tracks/__init__.py -> build/lib/galaxy/visualization/tracks 2025-12-13T04:00:53,024 creating build/lib/galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:53,025 copying galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:53,027 copying galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:53,029 copying galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:53,032 copying galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:53,034 copying galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:53,036 creating build/lib/tool_shed_client/schema 2025-12-13T04:00:53,037 copying tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2025-12-13T04:00:53,040 copying tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2025-12-13T04:00:53,042 copying tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2025-12-13T04:00:53,045 creating build/lib/galaxy_ext/container_monitor 2025-12-13T04:00:53,046 copying galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2025-12-13T04:00:53,047 copying galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2025-12-13T04:00:53,049 creating build/lib/galaxy_ext/expressions 2025-12-13T04:00:53,051 copying galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2025-12-13T04:00:53,052 copying galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2025-12-13T04:00:53,054 creating build/lib/galaxy_ext/metadata 2025-12-13T04:00:53,055 copying galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2025-12-13T04:00:53,057 copying galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2025-12-13T04:00:53,059 running egg_info 2025-12-13T04:00:53,073 writing galaxy_app.egg-info/PKG-INFO 2025-12-13T04:00:53,084 writing dependency_links to galaxy_app.egg-info/dependency_links.txt 2025-12-13T04:00:53,085 writing entry points to galaxy_app.egg-info/entry_points.txt 2025-12-13T04:00:53,087 writing requirements to galaxy_app.egg-info/requires.txt 2025-12-13T04:00:53,088 writing top-level names to galaxy_app.egg-info/top_level.txt 2025-12-13T04:00:53,150 reading manifest file 'galaxy_app.egg-info/SOURCES.txt' 2025-12-13T04:00:53,183 reading manifest template 'MANIFEST.in' 2025-12-13T04:00:53,688 adding license file 'LICENSE' 2025-12-13T04:00:53,720 writing manifest file 'galaxy_app.egg-info/SOURCES.txt' 2025-12-13T04:00:53,726 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2025-12-13T04:00:53,726 !! 2025-12-13T04:00:53,727 ******************************************************************************** 2025-12-13T04:00:53,728 ############################ 2025-12-13T04:00:53,728 # Package would be ignored # 2025-12-13T04:00:53,729 ############################ 2025-12-13T04:00:53,729 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2025-12-13T04:00:53,730 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,731 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,732 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2025-12-13T04:00:53,733 to the `packages` configuration field. 2025-12-13T04:00:53,734 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,734 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,735 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,736 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,737 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,738 If you don't want 'galaxy.tools.bundled' to be distributed and are 2025-12-13T04:00:53,739 already explicitly excluding 'galaxy.tools.bundled' via 2025-12-13T04:00:53,739 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,740 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,740 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,742 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,743 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,745 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,745 even if it does not contain any `.py` files. 2025-12-13T04:00:53,746 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,747 directory, all directories are treated like packages. 2025-12-13T04:00:53,747 ******************************************************************************** 2025-12-13T04:00:53,749 !! 2025-12-13T04:00:53,749 check.warn(importable) 2025-12-13T04:00:53,750 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2025-12-13T04:00:53,750 !! 2025-12-13T04:00:53,751 ******************************************************************************** 2025-12-13T04:00:53,751 ############################ 2025-12-13T04:00:53,752 # Package would be ignored # 2025-12-13T04:00:53,752 ############################ 2025-12-13T04:00:53,753 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2025-12-13T04:00:53,753 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,754 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,754 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2025-12-13T04:00:53,755 to the `packages` configuration field. 2025-12-13T04:00:53,756 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,756 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,757 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,758 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,759 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,760 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2025-12-13T04:00:53,760 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2025-12-13T04:00:53,761 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,761 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,762 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,763 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,764 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,767 even if it does not contain any `.py` files. 2025-12-13T04:00:53,767 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,768 directory, all directories are treated like packages. 2025-12-13T04:00:53,768 ******************************************************************************** 2025-12-13T04:00:53,769 !! 2025-12-13T04:00:53,770 check.warn(importable) 2025-12-13T04:00:53,770 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2025-12-13T04:00:53,771 !! 2025-12-13T04:00:53,772 ******************************************************************************** 2025-12-13T04:00:53,772 ############################ 2025-12-13T04:00:53,773 # Package would be ignored # 2025-12-13T04:00:53,773 ############################ 2025-12-13T04:00:53,774 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2025-12-13T04:00:53,774 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,776 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,776 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2025-12-13T04:00:53,777 to the `packages` configuration field. 2025-12-13T04:00:53,778 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,779 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,779 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,780 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,782 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2025-12-13T04:00:53,782 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2025-12-13T04:00:53,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,783 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,784 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,784 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,785 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,787 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,787 even if it does not contain any `.py` files. 2025-12-13T04:00:53,788 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,788 directory, all directories are treated like packages. 2025-12-13T04:00:53,788 ******************************************************************************** 2025-12-13T04:00:53,789 !! 2025-12-13T04:00:53,790 check.warn(importable) 2025-12-13T04:00:53,790 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2025-12-13T04:00:53,791 !! 2025-12-13T04:00:53,792 ******************************************************************************** 2025-12-13T04:00:53,792 ############################ 2025-12-13T04:00:53,793 # Package would be ignored # 2025-12-13T04:00:53,793 ############################ 2025-12-13T04:00:53,794 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2025-12-13T04:00:53,794 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,796 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,796 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2025-12-13T04:00:53,797 to the `packages` configuration field. 2025-12-13T04:00:53,798 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,798 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,799 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,800 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,801 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,802 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2025-12-13T04:00:53,803 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2025-12-13T04:00:53,803 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,804 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,804 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,806 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,806 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,808 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,808 even if it does not contain any `.py` files. 2025-12-13T04:00:53,808 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,809 directory, all directories are treated like packages. 2025-12-13T04:00:53,809 ******************************************************************************** 2025-12-13T04:00:53,810 !! 2025-12-13T04:00:53,810 check.warn(importable) 2025-12-13T04:00:53,811 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2025-12-13T04:00:53,811 !! 2025-12-13T04:00:53,812 ******************************************************************************** 2025-12-13T04:00:53,812 ############################ 2025-12-13T04:00:53,813 # Package would be ignored # 2025-12-13T04:00:53,813 ############################ 2025-12-13T04:00:53,814 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2025-12-13T04:00:53,814 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,815 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,816 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2025-12-13T04:00:53,816 to the `packages` configuration field. 2025-12-13T04:00:53,817 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,818 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,819 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,821 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2025-12-13T04:00:53,822 already explicitly excluding 'galaxy.tools.bundled.extract' via 2025-12-13T04:00:53,822 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,822 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,823 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,824 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,825 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,827 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,827 even if it does not contain any `.py` files. 2025-12-13T04:00:53,828 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,828 directory, all directories are treated like packages. 2025-12-13T04:00:53,829 ******************************************************************************** 2025-12-13T04:00:53,830 !! 2025-12-13T04:00:53,831 check.warn(importable) 2025-12-13T04:00:53,831 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2025-12-13T04:00:53,832 !! 2025-12-13T04:00:53,833 ******************************************************************************** 2025-12-13T04:00:53,834 ############################ 2025-12-13T04:00:53,834 # Package would be ignored # 2025-12-13T04:00:53,835 ############################ 2025-12-13T04:00:53,835 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2025-12-13T04:00:53,836 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,836 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,837 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2025-12-13T04:00:53,837 to the `packages` configuration field. 2025-12-13T04:00:53,838 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,838 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,839 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,839 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,840 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,841 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2025-12-13T04:00:53,842 already explicitly excluding 'galaxy.tools.bundled.filters' via 2025-12-13T04:00:53,842 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,843 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,843 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,844 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,845 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,846 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,847 even if it does not contain any `.py` files. 2025-12-13T04:00:53,847 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,848 directory, all directories are treated like packages. 2025-12-13T04:00:53,848 ******************************************************************************** 2025-12-13T04:00:53,849 !! 2025-12-13T04:00:53,850 check.warn(importable) 2025-12-13T04:00:53,850 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2025-12-13T04:00:53,851 !! 2025-12-13T04:00:53,852 ******************************************************************************** 2025-12-13T04:00:53,852 ############################ 2025-12-13T04:00:53,853 # Package would be ignored # 2025-12-13T04:00:53,853 ############################ 2025-12-13T04:00:53,854 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2025-12-13T04:00:53,854 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,855 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,856 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2025-12-13T04:00:53,856 to the `packages` configuration field. 2025-12-13T04:00:53,857 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,858 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,858 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,859 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,860 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,861 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2025-12-13T04:00:53,862 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2025-12-13T04:00:53,862 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,863 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,863 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,864 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,865 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,866 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,866 even if it does not contain any `.py` files. 2025-12-13T04:00:53,867 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,867 directory, all directories are treated like packages. 2025-12-13T04:00:53,867 ******************************************************************************** 2025-12-13T04:00:53,868 !! 2025-12-13T04:00:53,869 check.warn(importable) 2025-12-13T04:00:53,869 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2025-12-13T04:00:53,870 !! 2025-12-13T04:00:53,871 ******************************************************************************** 2025-12-13T04:00:53,871 ############################ 2025-12-13T04:00:53,872 # Package would be ignored # 2025-12-13T04:00:53,872 ############################ 2025-12-13T04:00:53,873 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2025-12-13T04:00:53,873 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,874 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,875 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2025-12-13T04:00:53,875 to the `packages` configuration field. 2025-12-13T04:00:53,876 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,877 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,877 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,878 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,879 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,880 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2025-12-13T04:00:53,881 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2025-12-13T04:00:53,881 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,882 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,882 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,883 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,884 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,885 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,886 even if it does not contain any `.py` files. 2025-12-13T04:00:53,886 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,887 directory, all directories are treated like packages. 2025-12-13T04:00:53,887 ******************************************************************************** 2025-12-13T04:00:53,889 !! 2025-12-13T04:00:53,889 check.warn(importable) 2025-12-13T04:00:53,890 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2025-12-13T04:00:53,890 !! 2025-12-13T04:00:53,891 ******************************************************************************** 2025-12-13T04:00:53,891 ############################ 2025-12-13T04:00:53,892 # Package would be ignored # 2025-12-13T04:00:53,892 ############################ 2025-12-13T04:00:53,892 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2025-12-13T04:00:53,893 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,894 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,894 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2025-12-13T04:00:53,894 to the `packages` configuration field. 2025-12-13T04:00:53,895 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,896 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,897 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,897 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,898 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,899 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2025-12-13T04:00:53,900 already explicitly excluding 'galaxy.tools.bundled.maf' via 2025-12-13T04:00:53,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,901 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,901 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,902 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,905 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,905 even if it does not contain any `.py` files. 2025-12-13T04:00:53,906 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,907 directory, all directories are treated like packages. 2025-12-13T04:00:53,907 ******************************************************************************** 2025-12-13T04:00:53,908 !! 2025-12-13T04:00:53,909 check.warn(importable) 2025-12-13T04:00:53,909 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2025-12-13T04:00:53,910 !! 2025-12-13T04:00:53,911 ******************************************************************************** 2025-12-13T04:00:53,911 ############################ 2025-12-13T04:00:53,912 # Package would be ignored # 2025-12-13T04:00:53,912 ############################ 2025-12-13T04:00:53,912 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2025-12-13T04:00:53,913 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,914 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,915 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2025-12-13T04:00:53,915 to the `packages` configuration field. 2025-12-13T04:00:53,916 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,917 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,917 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,918 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,919 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,919 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2025-12-13T04:00:53,920 already explicitly excluding 'galaxy.tools.bundled.meme' via 2025-12-13T04:00:53,920 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,921 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,921 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,922 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,923 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,924 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,925 even if it does not contain any `.py` files. 2025-12-13T04:00:53,925 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,926 directory, all directories are treated like packages. 2025-12-13T04:00:53,926 ******************************************************************************** 2025-12-13T04:00:53,927 !! 2025-12-13T04:00:53,927 check.warn(importable) 2025-12-13T04:00:53,928 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2025-12-13T04:00:53,928 !! 2025-12-13T04:00:53,929 ******************************************************************************** 2025-12-13T04:00:53,930 ############################ 2025-12-13T04:00:53,930 # Package would be ignored # 2025-12-13T04:00:53,931 ############################ 2025-12-13T04:00:53,931 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2025-12-13T04:00:53,932 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,933 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,933 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2025-12-13T04:00:53,934 to the `packages` configuration field. 2025-12-13T04:00:53,935 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,935 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,936 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,937 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,938 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,939 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2025-12-13T04:00:53,939 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2025-12-13T04:00:53,940 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,940 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,941 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,942 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,943 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,944 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,945 even if it does not contain any `.py` files. 2025-12-13T04:00:53,945 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,946 directory, all directories are treated like packages. 2025-12-13T04:00:53,946 ******************************************************************************** 2025-12-13T04:00:53,947 !! 2025-12-13T04:00:53,947 check.warn(importable) 2025-12-13T04:00:53,948 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2025-12-13T04:00:53,948 !! 2025-12-13T04:00:53,949 ******************************************************************************** 2025-12-13T04:00:53,949 ############################ 2025-12-13T04:00:53,950 # Package would be ignored # 2025-12-13T04:00:53,950 ############################ 2025-12-13T04:00:53,950 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2025-12-13T04:00:53,951 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,952 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,952 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2025-12-13T04:00:53,953 to the `packages` configuration field. 2025-12-13T04:00:53,954 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,954 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,955 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,956 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,957 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,958 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2025-12-13T04:00:53,958 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2025-12-13T04:00:53,958 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,959 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,959 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,960 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,961 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,963 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,963 even if it does not contain any `.py` files. 2025-12-13T04:00:53,964 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,964 directory, all directories are treated like packages. 2025-12-13T04:00:53,965 ******************************************************************************** 2025-12-13T04:00:53,966 !! 2025-12-13T04:00:53,966 check.warn(importable) 2025-12-13T04:00:53,967 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2025-12-13T04:00:53,967 !! 2025-12-13T04:00:53,968 ******************************************************************************** 2025-12-13T04:00:53,969 ############################ 2025-12-13T04:00:53,969 # Package would be ignored # 2025-12-13T04:00:53,970 ############################ 2025-12-13T04:00:53,971 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2025-12-13T04:00:53,971 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,972 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,972 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2025-12-13T04:00:53,973 to the `packages` configuration field. 2025-12-13T04:00:53,973 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,974 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,975 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,977 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2025-12-13T04:00:53,978 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2025-12-13T04:00:53,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,978 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,979 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:53,980 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:53,981 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:53,982 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:53,983 even if it does not contain any `.py` files. 2025-12-13T04:00:53,983 On the other hand, currently there is no concept of package data 2025-12-13T04:00:53,983 directory, all directories are treated like packages. 2025-12-13T04:00:53,984 ******************************************************************************** 2025-12-13T04:00:53,985 !! 2025-12-13T04:00:53,985 check.warn(importable) 2025-12-13T04:00:53,986 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2025-12-13T04:00:53,986 !! 2025-12-13T04:00:53,987 ******************************************************************************** 2025-12-13T04:00:53,988 ############################ 2025-12-13T04:00:53,988 # Package would be ignored # 2025-12-13T04:00:53,989 ############################ 2025-12-13T04:00:53,989 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2025-12-13T04:00:53,990 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:53,991 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:53,991 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2025-12-13T04:00:53,992 to the `packages` configuration field. 2025-12-13T04:00:53,993 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:53,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:53,994 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:53,995 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:53,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:53,997 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2025-12-13T04:00:53,998 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2025-12-13T04:00:53,998 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:53,999 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:53,999 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:54,000 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:54,001 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:54,002 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:54,002 even if it does not contain any `.py` files. 2025-12-13T04:00:54,003 On the other hand, currently there is no concept of package data 2025-12-13T04:00:54,003 directory, all directories are treated like packages. 2025-12-13T04:00:54,003 ******************************************************************************** 2025-12-13T04:00:54,004 !! 2025-12-13T04:00:54,005 check.warn(importable) 2025-12-13T04:00:54,005 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2025-12-13T04:00:54,005 !! 2025-12-13T04:00:54,006 ******************************************************************************** 2025-12-13T04:00:54,007 ############################ 2025-12-13T04:00:54,007 # Package would be ignored # 2025-12-13T04:00:54,008 ############################ 2025-12-13T04:00:54,008 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2025-12-13T04:00:54,009 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:54,010 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:54,010 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2025-12-13T04:00:54,011 to the `packages` configuration field. 2025-12-13T04:00:54,012 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:54,012 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:54,013 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:54,014 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:54,015 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:54,016 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2025-12-13T04:00:54,016 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2025-12-13T04:00:54,017 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:54,017 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:54,018 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:54,019 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:54,020 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:54,021 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:54,022 even if it does not contain any `.py` files. 2025-12-13T04:00:54,022 On the other hand, currently there is no concept of package data 2025-12-13T04:00:54,023 directory, all directories are treated like packages. 2025-12-13T04:00:54,023 ******************************************************************************** 2025-12-13T04:00:54,024 !! 2025-12-13T04:00:54,025 check.warn(importable) 2025-12-13T04:00:54,025 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2025-12-13T04:00:54,026 !! 2025-12-13T04:00:54,026 ******************************************************************************** 2025-12-13T04:00:54,027 ############################ 2025-12-13T04:00:54,027 # Package would be ignored # 2025-12-13T04:00:54,027 ############################ 2025-12-13T04:00:54,028 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2025-12-13T04:00:54,028 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:54,029 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:54,030 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2025-12-13T04:00:54,030 to the `packages` configuration field. 2025-12-13T04:00:54,031 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:54,031 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:54,032 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:54,033 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:54,034 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:54,035 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2025-12-13T04:00:54,035 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2025-12-13T04:00:54,036 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:54,036 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:54,036 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:54,038 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:54,039 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:54,040 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:54,041 even if it does not contain any `.py` files. 2025-12-13T04:00:54,041 On the other hand, currently there is no concept of package data 2025-12-13T04:00:54,042 directory, all directories are treated like packages. 2025-12-13T04:00:54,042 ******************************************************************************** 2025-12-13T04:00:54,043 !! 2025-12-13T04:00:54,044 check.warn(importable) 2025-12-13T04:00:54,044 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2025-12-13T04:00:54,045 !! 2025-12-13T04:00:54,046 ******************************************************************************** 2025-12-13T04:00:54,046 ############################ 2025-12-13T04:00:54,047 # Package would be ignored # 2025-12-13T04:00:54,047 ############################ 2025-12-13T04:00:54,048 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2025-12-13T04:00:54,049 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:54,050 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:54,050 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2025-12-13T04:00:54,051 to the `packages` configuration field. 2025-12-13T04:00:54,052 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:54,052 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:54,053 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:54,054 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:54,054 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:54,055 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2025-12-13T04:00:54,056 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2025-12-13T04:00:54,056 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:54,056 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:54,057 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:54,058 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:54,059 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:54,060 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:54,061 even if it does not contain any `.py` files. 2025-12-13T04:00:54,061 On the other hand, currently there is no concept of package data 2025-12-13T04:00:54,061 directory, all directories are treated like packages. 2025-12-13T04:00:54,062 ******************************************************************************** 2025-12-13T04:00:54,063 !! 2025-12-13T04:00:54,063 check.warn(importable) 2025-12-13T04:00:54,064 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2025-12-13T04:00:54,064 !! 2025-12-13T04:00:54,065 ******************************************************************************** 2025-12-13T04:00:54,065 ############################ 2025-12-13T04:00:54,066 # Package would be ignored # 2025-12-13T04:00:54,066 ############################ 2025-12-13T04:00:54,067 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2025-12-13T04:00:54,067 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:54,068 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:54,069 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2025-12-13T04:00:54,069 to the `packages` configuration field. 2025-12-13T04:00:54,070 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:54,071 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:54,071 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:54,072 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:54,073 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:54,074 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2025-12-13T04:00:54,075 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2025-12-13T04:00:54,075 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:54,076 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:54,076 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:54,077 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:54,078 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:54,079 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:54,079 even if it does not contain any `.py` files. 2025-12-13T04:00:54,080 On the other hand, currently there is no concept of package data 2025-12-13T04:00:54,080 directory, all directories are treated like packages. 2025-12-13T04:00:54,081 ******************************************************************************** 2025-12-13T04:00:54,082 !! 2025-12-13T04:00:54,082 check.warn(importable) 2025-12-13T04:00:54,082 /tmp/pip-build-env-03ysvrff/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2025-12-13T04:00:54,083 !! 2025-12-13T04:00:54,084 ******************************************************************************** 2025-12-13T04:00:54,084 ############################ 2025-12-13T04:00:54,084 # Package would be ignored # 2025-12-13T04:00:54,085 ############################ 2025-12-13T04:00:54,085 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2025-12-13T04:00:54,086 but it is absent from setuptools' `packages` configuration. 2025-12-13T04:00:54,087 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-13T04:00:54,087 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2025-12-13T04:00:54,088 to the `packages` configuration field. 2025-12-13T04:00:54,089 Alternatively, you can also rely on setuptools' discovery methods 2025-12-13T04:00:54,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-13T04:00:54,089 instead of `find_packages(...)`/`find:`). 2025-12-13T04:00:54,090 You can read more about "package discovery" on setuptools documentation page: 2025-12-13T04:00:54,091 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-13T04:00:54,092 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2025-12-13T04:00:54,093 already explicitly excluding 'galaxy.tools.bundled.stats' via 2025-12-13T04:00:54,093 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-13T04:00:54,094 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-13T04:00:54,094 combination with a more fine grained `package-data` configuration. 2025-12-13T04:00:54,095 You can read more about "package data files" on setuptools documentation page: 2025-12-13T04:00:54,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-13T04:00:54,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-13T04:00:54,098 even if it does not contain any `.py` files. 2025-12-13T04:00:54,098 On the other hand, currently there is no concept of package data 2025-12-13T04:00:54,099 directory, all directories are treated like packages. 2025-12-13T04:00:54,099 ******************************************************************************** 2025-12-13T04:00:54,100 !! 2025-12-13T04:00:54,101 check.warn(importable) 2025-12-13T04:00:54,101 copying galaxy/py.typed -> build/lib/galaxy 2025-12-13T04:00:54,102 copying tool_shed_client/py.typed -> build/lib/tool_shed_client 2025-12-13T04:00:54,102 copying galaxy_ext/py.typed -> build/lib/galaxy_ext 2025-12-13T04:00:54,103 copying galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,103 copying galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,104 copying galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,105 copying galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,105 copying galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,105 copying galaxy/dependencies/pinned-test-requirements.txt -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,106 copying galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,106 copying galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,107 copying galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2025-12-13T04:00:54,107 copying galaxy/carbon_emissions/carbon_intensity.csv -> build/lib/galaxy/carbon_emissions 2025-12-13T04:00:54,107 copying galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,108 copying galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,108 copying galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,109 copying galaxy/tools/cross_product_flat.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,109 copying galaxy/tools/cross_product_nested.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,109 copying galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,110 copying galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,110 copying galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,111 copying galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,111 copying galaxy/tools/filter_empty_collection_1.1.0.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,112 copying galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,112 copying galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,113 copying galaxy/tools/filter_from_file_1.1.0.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,113 copying galaxy/tools/filter_null.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,114 copying galaxy/tools/filter_null_1.1.0.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,114 copying galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,115 copying galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,115 copying galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,116 copying galaxy/tools/keep_success_collection_1.1.0.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,116 copying galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,117 copying galaxy/tools/model_operation_macros.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,117 copying galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,118 copying galaxy/tools/sample_sheet_to_tabular.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,118 copying galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,119 copying galaxy/tools/split_paired_and_unpaired.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,119 copying galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,120 copying galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,120 copying galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2025-12-13T04:00:54,121 creating build/lib/galaxy/tools/bundled 2025-12-13T04:00:54,121 copying galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2025-12-13T04:00:54,122 creating build/lib/galaxy/tools/bundled/data_export 2025-12-13T04:00:54,122 copying galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2025-12-13T04:00:54,123 copying galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2025-12-13T04:00:54,123 creating build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,124 copying galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,124 copying galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,125 copying galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,125 copying galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,126 copying galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,126 copying galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,126 copying galaxy/tools/bundled/data_source/diced.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,127 copying galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,127 copying galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,128 copying galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,128 copying galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,129 copying galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,129 copying galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,130 copying galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,130 copying galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,131 copying galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,131 copying galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,131 copying galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,132 copying galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,133 copying galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,133 copying galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,134 copying galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,134 copying galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,135 copying galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,135 copying galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,136 copying galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,136 copying galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,137 copying galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,137 copying galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,137 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,138 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,139 copying galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,139 copying galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,140 copying galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,140 copying galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,141 copying galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,141 copying galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,141 copying galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,142 copying galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2025-12-13T04:00:54,142 creating build/lib/galaxy/tools/bundled/expression_tools 2025-12-13T04:00:54,143 copying galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2025-12-13T04:00:54,143 copying galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2025-12-13T04:00:54,144 copying galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2025-12-13T04:00:54,144 creating build/lib/galaxy/tools/bundled/extract 2025-12-13T04:00:54,145 copying galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2025-12-13T04:00:54,145 copying galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2025-12-13T04:00:54,145 copying galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2025-12-13T04:00:54,146 copying galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2025-12-13T04:00:54,146 copying galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2025-12-13T04:00:54,147 creating build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,147 copying galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,148 copying galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,148 copying galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,149 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,149 copying galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,150 copying galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,150 copying galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,151 copying galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,151 copying galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,152 copying galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,152 copying galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,153 copying galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,153 copying galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,154 copying galaxy/tools/bundled/filters/catWrapper.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,154 copying galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,155 copying galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,155 copying galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,156 copying galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,156 copying galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,157 copying galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,157 copying galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,157 copying galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,158 copying galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,159 copying galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,159 copying galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,159 copying galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,160 copying galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,160 copying galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,161 copying galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,161 copying galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,162 copying galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,162 copying galaxy/tools/bundled/filters/grep.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,163 copying galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,163 copying galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,164 copying galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,164 copying galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,164 copying galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,165 copying galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,166 copying galaxy/tools/bundled/filters/joinWrapper.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,166 copying galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,167 copying galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,167 copying galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,168 copying galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,168 copying galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,171 copying galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,173 copying galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,175 copying galaxy/tools/bundled/filters/pasteWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,177 copying galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,180 copying galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,182 copying galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,184 copying galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,187 copying galaxy/tools/bundled/filters/remove_beginning.pl -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,189 copying galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,191 copying galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,193 copying galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,195 copying galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,198 copying galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,201 copying galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,203 copying galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,205 copying galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,207 copying galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,210 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,213 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,215 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,217 copying galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,220 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,222 copying galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,224 copying galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,227 copying galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,229 copying galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,232 copying galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,234 copying galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,236 copying galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2025-12-13T04:00:54,238 creating build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,239 copying galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,242 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,244 copying galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,247 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,250 copying galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,252 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,254 copying galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,257 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,259 copying galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:54,261 creating build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,262 copying galaxy/tools/bundled/interactive/Rprofile.R -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,265 copying galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,267 copying galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,269 copying galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,271 copying galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,273 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,276 copying galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,278 copying galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,281 copying galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,283 copying galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,286 copying galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,288 copying galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,290 copying galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,293 copying galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,296 copying galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,298 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,301 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,304 copying galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,307 copying galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,309 copying galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,312 copying galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,315 copying galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,317 copying galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,319 copying galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,322 copying galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,324 copying galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,327 copying galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,329 copying galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,331 copying galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,334 copying galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,336 copying galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,339 copying galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,342 copying galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,344 copying galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,346 copying galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,349 copying galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,351 copying galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,353 copying galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,355 copying galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2025-12-13T04:00:54,358 creating build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,359 copying galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,361 copying galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,364 copying galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,366 copying galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,369 copying galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,372 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,375 copying galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,377 copying galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,379 copying galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,381 copying galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,384 copying galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,386 copying galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,389 copying galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,391 copying galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,393 copying galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,395 copying galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,397 copying galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,400 copying galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,402 copying galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,404 copying galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,407 copying galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,409 copying galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,411 copying galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,413 copying galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,416 copying galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,418 copying galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,421 copying galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,423 copying galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,426 copying galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,428 copying galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,430 copying galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,433 copying galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,436 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,439 copying galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2025-12-13T04:00:54,442 creating build/lib/galaxy/tools/bundled/meme 2025-12-13T04:00:54,443 copying galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2025-12-13T04:00:54,446 creating build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,447 copying galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,449 copying galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,451 copying galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,454 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,456 copying galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,459 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,462 copying galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:54,465 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,466 copying galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,469 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,471 copying galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,474 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,476 copying galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,480 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,482 copying galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,485 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,487 copying galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:54,489 creating build/lib/galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:54,490 copying galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:54,492 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:54,494 copying galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:54,497 creating build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,498 copying galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,500 copying galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,502 copying galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,504 copying galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,507 copying galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,509 copying galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,512 copying galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,514 copying galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,516 copying galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,519 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,521 copying galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,524 copying galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,526 copying galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,529 copying galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,531 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,534 copying galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,536 copying galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,539 copying galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,541 copying galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,543 copying galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,546 copying galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,549 copying galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,551 copying galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,554 copying galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,556 copying galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:54,559 creating build/lib/galaxy/tools/bundled/plotting 2025-12-13T04:00:54,560 copying galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2025-12-13T04:00:54,563 copying galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2025-12-13T04:00:54,565 copying galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2025-12-13T04:00:54,568 creating build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,569 copying galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,571 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,573 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,576 copying galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,578 copying galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,581 copying galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,583 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,585 copying galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:54,588 creating build/lib/galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:54,589 copying galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:54,591 copying galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:54,593 copying galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:54,595 copying galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:54,598 copying galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:54,600 creating build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,601 copying galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,604 copying galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,606 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,609 copying galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,612 copying galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,614 copying galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,617 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,619 copying galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:54,622 creating build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,623 copying galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,625 copying galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,627 copying galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,630 copying galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,632 copying galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,635 copying galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,637 copying galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,639 copying galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,642 copying galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,644 copying galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,646 copying galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2025-12-13T04:00:54,648 copying galaxy/managers/licenses.json -> build/lib/galaxy/managers 2025-12-13T04:00:54,653 copying galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2025-12-13T04:00:54,655 copying galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,657 copying galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,659 copying galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,661 copying galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2025-12-13T04:00:54,664 copying galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2025-12-13T04:00:54,666 copying galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2025-12-13T04:00:54,668 copying galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2025-12-13T04:00:54,670 copying galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2025-12-13T04:00:54,712 installing to build/bdist.linux-armv7l/wheel 2025-12-13T04:00:54,713 running install 2025-12-13T04:00:54,735 running install_lib 2025-12-13T04:00:54,744 creating build/bdist.linux-armv7l/wheel 2025-12-13T04:00:54,746 creating build/bdist.linux-armv7l/wheel/galaxy 2025-12-13T04:00:54,747 copying build/lib/galaxy/queues.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:54,750 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2025-12-13T04:00:54,751 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2025-12-13T04:00:54,752 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2025-12-13T04:00:54,756 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2025-12-13T04:00:54,757 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,761 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2025-12-13T04:00:54,762 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/rules 2025-12-13T04:00:54,764 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,767 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,770 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,777 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,780 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,782 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2025-12-13T04:00:54,783 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2025-12-13T04:00:54,784 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2025-12-13T04:00:54,787 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2025-12-13T04:00:54,789 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2025-12-13T04:00:54,790 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,793 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2025-12-13T04:00:54,794 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2025-12-13T04:00:54,796 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2025-12-13T04:00:54,798 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2025-12-13T04:00:54,800 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2025-12-13T04:00:54,801 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,804 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2025-12-13T04:00:54,805 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/condor 2025-12-13T04:00:54,807 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,809 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2025-12-13T04:00:54,810 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2025-12-13T04:00:54,813 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:54,814 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:54,816 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:54,817 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2025-12-13T04:00:54,820 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:54,821 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:54,823 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:54,825 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:54,828 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:54,829 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:54,831 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2025-12-13T04:00:54,834 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2025-12-13T04:00:54,835 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,837 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,839 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,841 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,843 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,845 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,846 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,848 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,850 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,852 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2025-12-13T04:00:54,854 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2025-12-13T04:00:54,856 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,859 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,862 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,864 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,867 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,870 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,872 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,874 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,876 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,879 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,881 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,884 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,888 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,890 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2025-12-13T04:00:54,894 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,897 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2025-12-13T04:00:54,899 copying build/lib/galaxy/di.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:54,902 copying build/lib/galaxy/structured_app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:54,904 copying build/lib/galaxy/app.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:54,908 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:54,910 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2025-12-13T04:00:54,911 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2025-12-13T04:00:54,913 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2025-12-13T04:00:54,915 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2025-12-13T04:00:54,916 copying build/lib/galaxy/dependencies/pinned-test-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,919 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,921 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,922 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,924 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,926 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,928 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,930 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,932 copying build/lib/galaxy/dependencies/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,934 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,936 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2025-12-13T04:00:54,939 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2025-12-13T04:00:54,940 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2025-12-13T04:00:54,943 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2025-12-13T04:00:54,946 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2025-12-13T04:00:54,947 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2025-12-13T04:00:54,950 copying build/lib/galaxy/config_watchers.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:54,953 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2025-12-13T04:00:54,954 copying build/lib/galaxy/carbon_emissions/carbon_intensity.csv -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2025-12-13T04:00:54,957 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2025-12-13T04:00:54,959 copying build/lib/galaxy/main_config.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:54,962 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2025-12-13T04:00:54,963 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,966 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,969 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2025-12-13T04:00:54,970 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2025-12-13T04:00:54,972 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2025-12-13T04:00:54,974 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2025-12-13T04:00:54,976 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2025-12-13T04:00:54,978 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2025-12-13T04:00:54,980 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2025-12-13T04:00:54,982 copying build/lib/galaxy/tools/keep_success_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,984 copying build/lib/galaxy/tools/split_paired_and_unpaired.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,986 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,988 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2025-12-13T04:00:54,989 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data 2025-12-13T04:00:54,992 copying build/lib/galaxy/tools/model_operation_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,994 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,996 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:54,998 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2025-12-13T04:00:54,999 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2025-12-13T04:00:55,001 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2025-12-13T04:00:55,002 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util/galaxyops 2025-12-13T04:00:55,004 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2025-12-13T04:00:55,007 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,009 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2025-12-13T04:00:55,010 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2025-12-13T04:00:55,012 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2025-12-13T04:00:55,015 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,017 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,019 copying build/lib/galaxy/tools/stock.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,021 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,025 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,026 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,035 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2025-12-13T04:00:55,037 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2025-12-13T04:00:55,039 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,041 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,043 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,045 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,047 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,049 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,051 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,053 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,055 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,057 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,059 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,061 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,063 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,065 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,067 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,069 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,071 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,072 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,074 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,076 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,078 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,080 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,082 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,084 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,086 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,087 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,089 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,091 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,093 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,095 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,097 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,100 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,102 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,104 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2025-12-13T04:00:55,106 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,107 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,109 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,111 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,113 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,115 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,117 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,119 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,121 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,124 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2025-12-13T04:00:55,126 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2025-12-13T04:00:55,127 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2025-12-13T04:00:55,129 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2025-12-13T04:00:55,131 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2025-12-13T04:00:55,134 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,135 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,137 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,138 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,140 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,142 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,144 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,146 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,148 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2025-12-13T04:00:55,151 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,152 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,154 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,155 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,157 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,160 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,162 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,164 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2025-12-13T04:00:55,167 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2025-12-13T04:00:55,168 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2025-12-13T04:00:55,170 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2025-12-13T04:00:55,171 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2025-12-13T04:00:55,174 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2025-12-13T04:00:55,176 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2025-12-13T04:00:55,179 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2025-12-13T04:00:55,180 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,183 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,184 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,187 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,188 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,190 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,192 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,194 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,196 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,198 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,200 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,202 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,203 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,205 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,207 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,209 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,210 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,213 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,214 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,216 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,218 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,220 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,222 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,224 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,226 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,228 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,230 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,232 copying build/lib/galaxy/tools/bundled/data_source/diced.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,234 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,236 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,238 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,239 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,241 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,243 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,245 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,247 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,249 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,251 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,253 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2025-12-13T04:00:55,254 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled 2025-12-13T04:00:55,256 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2025-12-13T04:00:55,257 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2025-12-13T04:00:55,259 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2025-12-13T04:00:55,262 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,263 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,265 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,267 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,269 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,271 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,273 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,275 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,277 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,278 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,281 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,283 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,285 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,287 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,289 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,291 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,293 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,295 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,297 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,299 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,301 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,303 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,305 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,306 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,308 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,311 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2025-12-13T04:00:55,313 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,314 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,317 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,319 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,322 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,324 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,326 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,328 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,331 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2025-12-13T04:00:55,335 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2025-12-13T04:00:55,336 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,338 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,341 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,343 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,345 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,347 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,350 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,352 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,354 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,356 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,358 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,360 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,362 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,364 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,366 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,369 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,371 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,374 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,376 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,378 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,380 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,382 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,384 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,386 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,388 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,390 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,392 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,394 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,396 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,398 copying build/lib/galaxy/tools/bundled/interactive/Rprofile.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,400 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,403 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,405 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,407 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,409 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,411 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,414 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,415 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,417 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2025-12-13T04:00:55,419 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2025-12-13T04:00:55,421 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2025-12-13T04:00:55,424 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2025-12-13T04:00:55,425 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2025-12-13T04:00:55,428 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2025-12-13T04:00:55,429 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/meme 2025-12-13T04:00:55,433 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2025-12-13T04:00:55,434 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,436 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,438 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,440 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,443 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,444 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,446 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,449 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,451 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,453 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,456 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2025-12-13T04:00:55,458 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:55,460 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:55,462 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:55,463 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:55,465 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:55,467 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2025-12-13T04:00:55,471 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2025-12-13T04:00:55,472 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,475 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,476 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,478 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,480 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,482 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,484 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,486 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,488 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,490 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,492 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,494 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,497 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,499 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,501 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,503 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,505 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,507 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,509 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,511 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,512 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,515 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,516 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,518 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,520 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,522 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,523 copying build/lib/galaxy/tools/bundled/filters/joinWrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,525 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,527 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,529 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,531 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,533 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,535 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,537 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,539 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,541 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,543 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,545 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,547 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,549 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,551 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2025-12-13T04:00:55,553 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,555 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,557 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,559 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,561 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,563 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,564 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,566 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,568 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,571 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,573 copying build/lib/galaxy/tools/bundled/filters/grep.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,575 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,577 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,579 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,580 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,582 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,584 copying build/lib/galaxy/tools/bundled/filters/catWrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,586 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,588 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,590 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,592 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,594 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,596 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,598 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,600 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,602 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,604 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,606 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,608 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,610 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,612 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,614 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,616 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,617 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,619 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,621 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,623 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,625 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,627 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,629 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,631 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,633 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2025-12-13T04:00:55,635 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:55,636 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:55,639 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:55,640 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2025-12-13T04:00:55,643 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2025-12-13T04:00:55,644 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,647 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,649 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,651 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,654 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,657 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,658 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,661 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2025-12-13T04:00:55,663 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,665 copying build/lib/galaxy/tools/filter_null_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,667 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,669 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,672 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,674 copying build/lib/galaxy/tools/filter_from_file_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,677 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2025-12-13T04:00:55,678 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2025-12-13T04:00:55,680 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2025-12-13T04:00:55,681 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2025-12-13T04:00:55,683 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2025-12-13T04:00:55,685 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2025-12-13T04:00:55,687 copying build/lib/galaxy/tools/filter_empty_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,688 copying build/lib/galaxy/tools/execution_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,690 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,693 copying build/lib/galaxy/tools/cross_product_nested.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,695 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2025-12-13T04:00:55,696 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/search 2025-12-13T04:00:55,699 copying build/lib/galaxy/tools/cross_product_flat.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,701 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,704 creating build/bdist.linux-armv7l/wheel/galaxy/tools/fetch 2025-12-13T04:00:55,705 copying build/lib/galaxy/tools/fetch/workbooks.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2025-12-13T04:00:55,707 copying build/lib/galaxy/tools/fetch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2025-12-13T04:00:55,709 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,710 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,713 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,714 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,716 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,718 copying build/lib/galaxy/tools/sample_sheet_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,721 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2025-12-13T04:00:55,722 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports 2025-12-13T04:00:55,725 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,726 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,728 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,730 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,732 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,734 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,736 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,737 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,739 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,741 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2025-12-13T04:00:55,743 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,746 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2025-12-13T04:00:55,747 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/filters 2025-12-13T04:00:55,749 copying build/lib/galaxy/tools/filter_null.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,751 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,754 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2025-12-13T04:00:55,755 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,757 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,760 copying build/lib/galaxy/tools/parameters/options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,762 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,764 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,767 copying build/lib/galaxy/tools/parameters/populate_model.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,768 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,771 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,774 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,776 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,778 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,780 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,784 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,787 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,789 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2025-12-13T04:00:55,791 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,792 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,794 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,797 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,798 copying build/lib/galaxy/tools/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,801 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,802 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,804 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2025-12-13T04:00:55,806 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2025-12-13T04:00:55,807 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/webhooks 2025-12-13T04:00:55,810 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2025-12-13T04:00:55,811 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/short_term_storage 2025-12-13T04:00:55,814 creating build/bdist.linux-armv7l/wheel/galaxy/work 2025-12-13T04:00:55,815 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2025-12-13T04:00:55,816 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2025-12-13T04:00:55,819 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2025-12-13T04:00:55,821 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2025-12-13T04:00:55,822 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,824 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,826 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,828 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,830 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,832 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,835 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,837 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,840 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,842 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,844 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2025-12-13T04:00:55,846 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2025-12-13T04:00:55,848 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2025-12-13T04:00:55,849 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2025-12-13T04:00:55,851 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2025-12-13T04:00:55,853 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2025-12-13T04:00:55,855 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2025-12-13T04:00:55,858 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2025-12-13T04:00:55,859 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/unittest_utils 2025-12-13T04:00:55,861 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2025-12-13T04:00:55,862 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2025-12-13T04:00:55,864 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2025-12-13T04:00:55,867 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2025-12-13T04:00:55,869 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2025-12-13T04:00:55,870 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2025-12-13T04:00:55,873 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2025-12-13T04:00:55,875 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2025-12-13T04:00:55,879 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:55,880 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:55,883 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:55,885 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2025-12-13T04:00:55,887 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2025-12-13T04:00:55,889 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2025-12-13T04:00:55,892 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2025-12-13T04:00:55,893 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2025-12-13T04:00:55,894 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2025-12-13T04:00:55,897 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2025-12-13T04:00:55,898 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2025-12-13T04:00:55,900 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2025-12-13T04:00:55,903 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:55,905 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2025-12-13T04:00:55,906 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2025-12-13T04:00:55,908 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2025-12-13T04:00:55,911 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2025-12-13T04:00:55,913 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2025-12-13T04:00:55,916 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2025-12-13T04:00:55,918 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,921 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2025-12-13T04:00:55,922 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2025-12-13T04:00:55,924 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2025-12-13T04:00:55,926 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,929 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2025-12-13T04:00:55,930 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports 2025-12-13T04:00:55,932 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2025-12-13T04:00:55,933 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2025-12-13T04:00:55,935 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2025-12-13T04:00:55,937 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,939 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,941 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,945 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2025-12-13T04:00:55,946 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2025-12-13T04:00:55,947 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2025-12-13T04:00:55,949 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,952 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,954 copying build/lib/galaxy/workflow/workflow_parameter_input_definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,956 copying build/lib/galaxy/workflow/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,959 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,962 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2025-12-13T04:00:55,963 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2025-12-13T04:00:55,964 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2025-12-13T04:00:55,967 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2025-12-13T04:00:55,970 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2025-12-13T04:00:55,975 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2025-12-13T04:00:55,976 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/genome 2025-12-13T04:00:55,977 copying build/lib/galaxy/visualization/genome/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/genome 2025-12-13T04:00:55,979 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2025-12-13T04:00:55,982 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2025-12-13T04:00:55,983 copying build/lib/galaxy/visualization/plugins/utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2025-12-13T04:00:55,985 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2025-12-13T04:00:55,987 copying build/lib/galaxy/visualization/plugins/datasource_testing.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2025-12-13T04:00:55,990 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2025-12-13T04:00:55,992 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2025-12-13T04:00:55,993 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2025-12-13T04:00:55,996 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2025-12-13T04:00:55,998 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2025-12-13T04:00:56,001 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2025-12-13T04:00:56,002 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2025-12-13T04:00:56,005 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2025-12-13T04:00:56,007 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2025-12-13T04:00:56,009 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2025-12-13T04:00:56,011 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2025-12-13T04:00:56,013 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:56,014 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:56,016 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:56,018 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:56,020 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:56,023 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2025-12-13T04:00:56,025 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/tracks 2025-12-13T04:00:56,026 copying build/lib/galaxy/visualization/tracks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/tracks 2025-12-13T04:00:56,029 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2025-12-13T04:00:56,030 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2025-12-13T04:00:56,032 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2025-12-13T04:00:56,035 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2025-12-13T04:00:56,037 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2025-12-13T04:00:56,039 copying build/lib/galaxy/authnz/tapis.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2025-12-13T04:00:56,041 copying build/lib/galaxy/authnz/custos_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2025-12-13T04:00:56,044 copying build/lib/galaxy/queue_worker.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:56,048 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2025-12-13T04:00:56,049 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,052 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,055 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,057 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,059 copying build/lib/galaxy/managers/object_store_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,062 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,064 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,066 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,068 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,071 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,073 copying build/lib/galaxy/managers/chat.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,075 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,077 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,079 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,082 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,084 copying build/lib/galaxy/managers/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,087 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,089 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,091 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,093 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,095 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,098 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,101 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,103 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,105 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,107 copying build/lib/galaxy/managers/metrics.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,109 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,112 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,114 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,117 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,119 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,122 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,124 copying build/lib/galaxy/managers/_config_templates.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,126 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,129 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,132 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,135 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,137 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,139 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,141 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,143 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,147 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,150 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,152 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,154 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,158 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,161 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,163 copying build/lib/galaxy/managers/file_source_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,166 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,168 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,170 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,172 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,174 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,176 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,181 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,184 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,186 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,188 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,191 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,193 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,195 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,199 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,202 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2025-12-13T04:00:56,204 copying build/lib/galaxy/main.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-13T04:00:56,207 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2025-12-13T04:00:56,208 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2025-12-13T04:00:56,210 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2025-12-13T04:00:56,211 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2025-12-13T04:00:56,213 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2025-12-13T04:00:56,214 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2025-12-13T04:00:56,216 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2025-12-13T04:00:56,219 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2025-12-13T04:00:56,221 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2025-12-13T04:00:56,222 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2025-12-13T04:00:56,223 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2025-12-13T04:00:56,225 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2025-12-13T04:00:56,226 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2025-12-13T04:00:56,228 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2025-12-13T04:00:56,229 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2025-12-13T04:00:56,231 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2025-12-13T04:00:56,233 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2025-12-13T04:00:56,235 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2025-12-13T04:00:56,236 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2025-12-13T04:00:56,237 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2025-12-13T04:00:56,239 running install_egg_info 2025-12-13T04:00:56,252 Copying galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_app-25.1.dev0-py3.11.egg-info 2025-12-13T04:00:56,266 running install_scripts 2025-12-13T04:00:56,280 creating build/bdist.linux-armv7l/wheel/galaxy_app-25.1.dev0.dist-info/WHEEL 2025-12-13T04:00:56,283 creating '/tmp/pip-wheel-1bf0mcrd/.tmp-lieoxb4z/galaxy_app-25.1.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-13T04:00:56,286 adding 'galaxy/__init__.py' 2025-12-13T04:00:56,291 adding 'galaxy/app.py' 2025-12-13T04:00:56,293 adding 'galaxy/config_watchers.py' 2025-12-13T04:00:56,294 adding 'galaxy/di.py' 2025-12-13T04:00:56,296 adding 'galaxy/main.py' 2025-12-13T04:00:56,298 adding 'galaxy/main_config.py' 2025-12-13T04:00:56,299 adding 'galaxy/py.typed' 2025-12-13T04:00:56,301 adding 'galaxy/queue_worker.py' 2025-12-13T04:00:56,303 adding 'galaxy/queues.py' 2025-12-13T04:00:56,305 adding 'galaxy/structured_app.py' 2025-12-13T04:00:56,306 adding 'galaxy/actions/__init__.py' 2025-12-13T04:00:56,309 adding 'galaxy/actions/library.py' 2025-12-13T04:00:56,310 adding 'galaxy/app_unittest_utils/__init__.py' 2025-12-13T04:00:56,313 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2025-12-13T04:00:56,314 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2025-12-13T04:00:56,316 adding 'galaxy/app_unittest_utils/tools_support.py' 2025-12-13T04:00:56,318 adding 'galaxy/authnz/__init__.py' 2025-12-13T04:00:56,322 adding 'galaxy/authnz/custos_authnz.py' 2025-12-13T04:00:56,324 adding 'galaxy/authnz/managers.py' 2025-12-13T04:00:56,328 adding 'galaxy/authnz/psa_authnz.py' 2025-12-13T04:00:56,330 adding 'galaxy/authnz/tapis.py' 2025-12-13T04:00:56,331 adding 'galaxy/authnz/util.py' 2025-12-13T04:00:56,333 adding 'galaxy/carbon_emissions/__init__.py' 2025-12-13T04:00:56,335 adding 'galaxy/carbon_emissions/carbon_intensity.csv' 2025-12-13T04:00:56,337 adding 'galaxy/celery/__init__.py' 2025-12-13T04:00:56,338 adding 'galaxy/celery/_serialization.py' 2025-12-13T04:00:56,340 adding 'galaxy/celery/base_task.py' 2025-12-13T04:00:56,342 adding 'galaxy/celery/tasks.py' 2025-12-13T04:00:56,345 adding 'galaxy/dependencies/__init__.py' 2025-12-13T04:00:56,347 adding 'galaxy/dependencies/conditional-requirements.txt' 2025-12-13T04:00:56,348 adding 'galaxy/dependencies/dev-requirements.txt' 2025-12-13T04:00:56,349 adding 'galaxy/dependencies/lint-requirements.txt' 2025-12-13T04:00:56,351 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2025-12-13T04:00:56,352 adding 'galaxy/dependencies/pinned-requirements.txt' 2025-12-13T04:00:56,354 adding 'galaxy/dependencies/pinned-test-requirements.txt' 2025-12-13T04:00:56,355 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2025-12-13T04:00:56,357 adding 'galaxy/dependencies/script.py' 2025-12-13T04:00:56,358 adding 'galaxy/dependencies/update.sh' 2025-12-13T04:00:56,359 adding 'galaxy/dependencies/update_lint_requirements.sh' 2025-12-13T04:00:56,361 adding 'galaxy/forms/__init__.py' 2025-12-13T04:00:56,363 adding 'galaxy/forms/forms.py' 2025-12-13T04:00:56,380 adding 'galaxy/jobs/__init__.py' 2025-12-13T04:00:56,383 adding 'galaxy/jobs/command_factory.py' 2025-12-13T04:00:56,391 adding 'galaxy/jobs/dynamic_tool_destination.py' 2025-12-13T04:00:56,398 adding 'galaxy/jobs/handler.py' 2025-12-13T04:00:56,400 adding 'galaxy/jobs/manager.py' 2025-12-13T04:00:56,402 adding 'galaxy/jobs/mapper.py' 2025-12-13T04:00:56,404 adding 'galaxy/jobs/rule_helper.py' 2025-12-13T04:00:56,405 adding 'galaxy/jobs/stock_rules.py' 2025-12-13T04:00:56,407 adding 'galaxy/jobs/rules/__init__.py' 2025-12-13T04:00:56,413 adding 'galaxy/jobs/runners/__init__.py' 2025-12-13T04:00:56,416 adding 'galaxy/jobs/runners/aws.py' 2025-12-13T04:00:56,418 adding 'galaxy/jobs/runners/chronos.py' 2025-12-13T04:00:56,420 adding 'galaxy/jobs/runners/cli.py' 2025-12-13T04:00:56,422 adding 'galaxy/jobs/runners/condor.py' 2025-12-13T04:00:56,425 adding 'galaxy/jobs/runners/drmaa.py' 2025-12-13T04:00:56,428 adding 'galaxy/jobs/runners/godocker.py' 2025-12-13T04:00:56,434 adding 'galaxy/jobs/runners/kubernetes.py' 2025-12-13T04:00:56,436 adding 'galaxy/jobs/runners/local.py' 2025-12-13T04:00:56,439 adding 'galaxy/jobs/runners/pbs.py' 2025-12-13T04:00:56,445 adding 'galaxy/jobs/runners/pulsar.py' 2025-12-13T04:00:56,448 adding 'galaxy/jobs/runners/slurm.py' 2025-12-13T04:00:56,449 adding 'galaxy/jobs/runners/state_handler_factory.py' 2025-12-13T04:00:56,451 adding 'galaxy/jobs/runners/tasks.py' 2025-12-13T04:00:56,455 adding 'galaxy/jobs/runners/univa.py' 2025-12-13T04:00:56,457 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2025-12-13T04:00:56,458 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2025-12-13T04:00:56,460 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2025-12-13T04:00:56,462 adding 'galaxy/jobs/runners/util/__init__.py' 2025-12-13T04:00:56,463 adding 'galaxy/jobs/runners/util/env.py' 2025-12-13T04:00:56,464 adding 'galaxy/jobs/runners/util/external.py' 2025-12-13T04:00:56,466 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2025-12-13T04:00:56,467 adding 'galaxy/jobs/runners/util/kill.py' 2025-12-13T04:00:56,468 adding 'galaxy/jobs/runners/util/process_groups.py' 2025-12-13T04:00:56,470 adding 'galaxy/jobs/runners/util/pykube_util.py' 2025-12-13T04:00:56,472 adding 'galaxy/jobs/runners/util/sudo.py' 2025-12-13T04:00:56,474 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2025-12-13T04:00:56,475 adding 'galaxy/jobs/runners/util/cli/factory.py' 2025-12-13T04:00:56,477 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2025-12-13T04:00:56,479 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2025-12-13T04:00:56,480 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2025-12-13T04:00:56,481 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2025-12-13T04:00:56,483 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2025-12-13T04:00:56,484 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2025-12-13T04:00:56,486 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2025-12-13T04:00:56,487 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2025-12-13T04:00:56,488 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2025-12-13T04:00:56,490 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2025-12-13T04:00:56,492 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2025-12-13T04:00:56,493 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2025-12-13T04:00:56,494 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2025-12-13T04:00:56,496 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2025-12-13T04:00:56,497 adding 'galaxy/jobs/splitters/__init__.py' 2025-12-13T04:00:56,498 adding 'galaxy/jobs/splitters/basic.py' 2025-12-13T04:00:56,500 adding 'galaxy/jobs/splitters/multi.py' 2025-12-13T04:00:56,503 adding 'galaxy/managers/__init__.py' 2025-12-13T04:00:56,505 adding 'galaxy/managers/_config_templates.py' 2025-12-13T04:00:56,507 adding 'galaxy/managers/annotatable.py' 2025-12-13T04:00:56,508 adding 'galaxy/managers/api_keys.py' 2025-12-13T04:00:56,515 adding 'galaxy/managers/base.py' 2025-12-13T04:00:56,517 adding 'galaxy/managers/chat.py' 2025-12-13T04:00:56,518 adding 'galaxy/managers/citations.py' 2025-12-13T04:00:56,523 adding 'galaxy/managers/collections.py' 2025-12-13T04:00:56,525 adding 'galaxy/managers/collections_util.py' 2025-12-13T04:00:56,527 adding 'galaxy/managers/configuration.py' 2025-12-13T04:00:56,529 adding 'galaxy/managers/context.py' 2025-12-13T04:00:56,534 adding 'galaxy/managers/datasets.py' 2025-12-13T04:00:56,535 adding 'galaxy/managers/datatypes.py' 2025-12-13T04:00:56,537 adding 'galaxy/managers/dbkeys.py' 2025-12-13T04:00:56,539 adding 'galaxy/managers/deletable.py' 2025-12-13T04:00:56,540 adding 'galaxy/managers/display_applications.py' 2025-12-13T04:00:56,541 adding 'galaxy/managers/executables.py' 2025-12-13T04:00:56,543 adding 'galaxy/managers/export_tracker.py' 2025-12-13T04:00:56,546 adding 'galaxy/managers/file_source_instances.py' 2025-12-13T04:00:56,549 adding 'galaxy/managers/folders.py' 2025-12-13T04:00:56,550 adding 'galaxy/managers/forms.py' 2025-12-13T04:00:56,552 adding 'galaxy/managers/genomes.py' 2025-12-13T04:00:56,553 adding 'galaxy/managers/group_roles.py' 2025-12-13T04:00:56,554 adding 'galaxy/managers/group_users.py' 2025-12-13T04:00:56,556 adding 'galaxy/managers/groups.py' 2025-12-13T04:00:56,559 adding 'galaxy/managers/hdas.py' 2025-12-13T04:00:56,561 adding 'galaxy/managers/hdcas.py' 2025-12-13T04:00:56,566 adding 'galaxy/managers/histories.py' 2025-12-13T04:00:56,570 adding 'galaxy/managers/history_contents.py' 2025-12-13T04:00:56,572 adding 'galaxy/managers/interactivetool.py' 2025-12-13T04:00:56,574 adding 'galaxy/managers/item_tags.py' 2025-12-13T04:00:56,576 adding 'galaxy/managers/job_connections.py' 2025-12-13T04:00:56,585 adding 'galaxy/managers/jobs.py' 2025-12-13T04:00:56,587 adding 'galaxy/managers/landing.py' 2025-12-13T04:00:56,588 adding 'galaxy/managers/lddas.py' 2025-12-13T04:00:56,591 adding 'galaxy/managers/libraries.py' 2025-12-13T04:00:56,593 adding 'galaxy/managers/library_datasets.py' 2025-12-13T04:00:56,604 adding 'galaxy/managers/licenses.json' 2025-12-13T04:00:56,607 adding 'galaxy/managers/licenses.py' 2025-12-13T04:00:56,608 adding 'galaxy/managers/markdown_export_base.css' 2025-12-13T04:00:56,610 adding 'galaxy/managers/markdown_parse.py' 2025-12-13T04:00:56,615 adding 'galaxy/managers/markdown_util.py' 2025-12-13T04:00:56,617 adding 'galaxy/managers/metrics.py' 2025-12-13T04:00:56,619 adding 'galaxy/managers/model_stores.py' 2025-12-13T04:00:56,622 adding 'galaxy/managers/notification.py' 2025-12-13T04:00:56,625 adding 'galaxy/managers/object_store_instances.py' 2025-12-13T04:00:56,628 adding 'galaxy/managers/pages.py' 2025-12-13T04:00:56,630 adding 'galaxy/managers/quotas.py' 2025-12-13T04:00:56,631 adding 'galaxy/managers/ratable.py' 2025-12-13T04:00:56,633 adding 'galaxy/managers/rbac_secured.py' 2025-12-13T04:00:56,635 adding 'galaxy/managers/remote_files.py' 2025-12-13T04:00:56,636 adding 'galaxy/managers/roles.py' 2025-12-13T04:00:56,638 adding 'galaxy/managers/secured.py' 2025-12-13T04:00:56,639 adding 'galaxy/managers/session.py' 2025-12-13T04:00:56,642 adding 'galaxy/managers/sharable.py' 2025-12-13T04:00:56,643 adding 'galaxy/managers/taggable.py' 2025-12-13T04:00:56,645 adding 'galaxy/managers/tags.py' 2025-12-13T04:00:56,646 adding 'galaxy/managers/tasks.py' 2025-12-13T04:00:56,647 adding 'galaxy/managers/tool_data.py' 2025-12-13T04:00:56,649 adding 'galaxy/managers/tools.py' 2025-12-13T04:00:56,654 adding 'galaxy/managers/users.py' 2025-12-13T04:00:56,655 adding 'galaxy/managers/visualizations.py' 2025-12-13T04:00:56,667 adding 'galaxy/managers/workflows.py' 2025-12-13T04:00:56,670 adding 'galaxy/short_term_storage/__init__.py' 2025-12-13T04:00:56,672 adding 'galaxy/tool_shed/__init__.py' 2025-12-13T04:00:56,674 adding 'galaxy/tool_shed/cache.py' 2025-12-13T04:00:56,675 adding 'galaxy/tool_shed/repository_type.py' 2025-12-13T04:00:56,677 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2025-12-13T04:00:56,678 adding 'galaxy/tool_shed/galaxy_install/client.py' 2025-12-13T04:00:56,683 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2025-12-13T04:00:56,688 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2025-12-13T04:00:56,690 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2025-12-13T04:00:56,692 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2025-12-13T04:00:56,694 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2025-12-13T04:00:56,695 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2025-12-13T04:00:56,699 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2025-12-13T04:00:56,701 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2025-12-13T04:00:56,703 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2025-12-13T04:00:56,706 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2025-12-13T04:00:56,708 adding 'galaxy/tool_shed/metadata/__init__.py' 2025-12-13T04:00:56,714 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2025-12-13T04:00:56,716 adding 'galaxy/tool_shed/tools/__init__.py' 2025-12-13T04:00:56,717 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2025-12-13T04:00:56,719 adding 'galaxy/tool_shed/tools/tool_validator.py' 2025-12-13T04:00:56,721 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2025-12-13T04:00:56,723 adding 'galaxy/tool_shed/util/__init__.py' 2025-12-13T04:00:56,725 adding 'galaxy/tool_shed/util/basic_util.py' 2025-12-13T04:00:56,726 adding 'galaxy/tool_shed/util/container_util.py' 2025-12-13T04:00:56,728 adding 'galaxy/tool_shed/util/dependency_display.py' 2025-12-13T04:00:56,730 adding 'galaxy/tool_shed/util/hg_util.py' 2025-12-13T04:00:56,732 adding 'galaxy/tool_shed/util/metadata_util.py' 2025-12-13T04:00:56,735 adding 'galaxy/tool_shed/util/repository_util.py' 2025-12-13T04:00:56,737 adding 'galaxy/tool_shed/util/shed_util_common.py' 2025-12-13T04:00:56,740 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2025-12-13T04:00:56,742 adding 'galaxy/tool_shed/util/tool_util.py' 2025-12-13T04:00:56,745 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2025-12-13T04:00:56,771 adding 'galaxy/tools/__init__.py' 2025-12-13T04:00:56,773 adding 'galaxy/tools/_types.py' 2025-12-13T04:00:56,775 adding 'galaxy/tools/apply_rules.xml' 2025-12-13T04:00:56,776 adding 'galaxy/tools/biotools.py' 2025-12-13T04:00:56,778 adding 'galaxy/tools/build_list.xml' 2025-12-13T04:00:56,779 adding 'galaxy/tools/build_list_1.2.0.xml' 2025-12-13T04:00:56,781 adding 'galaxy/tools/cache.py' 2025-12-13T04:00:56,782 adding 'galaxy/tools/cross_product_flat.xml' 2025-12-13T04:00:56,784 adding 'galaxy/tools/cross_product_nested.xml' 2025-12-13T04:00:56,787 adding 'galaxy/tools/data_fetch.py' 2025-12-13T04:00:56,789 adding 'galaxy/tools/data_fetch.xml' 2025-12-13T04:00:56,790 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2025-12-13T04:00:56,792 adding 'galaxy/tools/errors.py' 2025-12-13T04:00:56,797 adding 'galaxy/tools/evaluation.py' 2025-12-13T04:00:56,798 adding 'galaxy/tools/exception_handling.py' 2025-12-13T04:00:56,802 adding 'galaxy/tools/execute.py' 2025-12-13T04:00:56,803 adding 'galaxy/tools/execution_helpers.py' 2025-12-13T04:00:56,805 adding 'galaxy/tools/extract_dataset.xml' 2025-12-13T04:00:56,806 adding 'galaxy/tools/filter_empty_collection.xml' 2025-12-13T04:00:56,807 adding 'galaxy/tools/filter_empty_collection_1.1.0.xml' 2025-12-13T04:00:56,808 adding 'galaxy/tools/filter_failed_collection.xml' 2025-12-13T04:00:56,810 adding 'galaxy/tools/filter_from_file.xml' 2025-12-13T04:00:56,811 adding 'galaxy/tools/filter_from_file_1.1.0.xml' 2025-12-13T04:00:56,813 adding 'galaxy/tools/filter_null.xml' 2025-12-13T04:00:56,814 adding 'galaxy/tools/filter_null_1.1.0.xml' 2025-12-13T04:00:56,815 adding 'galaxy/tools/flatten_collection.xml' 2025-12-13T04:00:56,817 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2025-12-13T04:00:56,818 adding 'galaxy/tools/keep_success_collection.xml' 2025-12-13T04:00:56,819 adding 'galaxy/tools/keep_success_collection_1.1.0.xml' 2025-12-13T04:00:56,821 adding 'galaxy/tools/merge_collection.xml' 2025-12-13T04:00:56,822 adding 'galaxy/tools/model_operation_macros.xml' 2025-12-13T04:00:56,825 adding 'galaxy/tools/recommendations.py' 2025-12-13T04:00:56,826 adding 'galaxy/tools/relabel_from_file.xml' 2025-12-13T04:00:56,828 adding 'galaxy/tools/remote_tool_eval.py' 2025-12-13T04:00:56,829 adding 'galaxy/tools/repositories.py' 2025-12-13T04:00:56,830 adding 'galaxy/tools/sample_sheet_to_tabular.xml' 2025-12-13T04:00:56,832 adding 'galaxy/tools/sort_collection_list.xml' 2025-12-13T04:00:56,833 adding 'galaxy/tools/special_tools.py' 2025-12-13T04:00:56,834 adding 'galaxy/tools/split_paired_and_unpaired.xml' 2025-12-13T04:00:56,836 adding 'galaxy/tools/stock.py' 2025-12-13T04:00:56,837 adding 'galaxy/tools/tag_collection_from_file.xml' 2025-12-13T04:00:56,838 adding 'galaxy/tools/unzip_collection.xml' 2025-12-13T04:00:56,842 adding 'galaxy/tools/wrappers.py' 2025-12-13T04:00:56,843 adding 'galaxy/tools/zip_collection.xml' 2025-12-13T04:00:56,851 adding 'galaxy/tools/actions/__init__.py' 2025-12-13T04:00:56,853 adding 'galaxy/tools/actions/data_manager.py' 2025-12-13T04:00:56,854 adding 'galaxy/tools/actions/data_source.py' 2025-12-13T04:00:56,856 adding 'galaxy/tools/actions/history_imp_exp.py' 2025-12-13T04:00:56,858 adding 'galaxy/tools/actions/metadata.py' 2025-12-13T04:00:56,859 adding 'galaxy/tools/actions/model_operations.py' 2025-12-13T04:00:56,861 adding 'galaxy/tools/actions/upload.py' 2025-12-13T04:00:56,864 adding 'galaxy/tools/actions/upload_common.py' 2025-12-13T04:00:56,865 adding 'galaxy/tools/bundled/__init__.py' 2025-12-13T04:00:56,867 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2025-12-13T04:00:56,868 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2025-12-13T04:00:56,871 adding 'galaxy/tools/bundled/data_source/__init__.py' 2025-12-13T04:00:56,872 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2025-12-13T04:00:56,873 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2025-12-13T04:00:56,875 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2025-12-13T04:00:56,876 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2025-12-13T04:00:56,877 adding 'galaxy/tools/bundled/data_source/data_source.py' 2025-12-13T04:00:56,879 adding 'galaxy/tools/bundled/data_source/diced.xml' 2025-12-13T04:00:56,880 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2025-12-13T04:00:56,881 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2025-12-13T04:00:56,882 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2025-12-13T04:00:56,883 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2025-12-13T04:00:56,884 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2025-12-13T04:00:56,886 adding 'galaxy/tools/bundled/data_source/genbank.py' 2025-12-13T04:00:56,887 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2025-12-13T04:00:56,888 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2025-12-13T04:00:56,889 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2025-12-13T04:00:56,891 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2025-12-13T04:00:56,892 adding 'galaxy/tools/bundled/data_source/import.py' 2025-12-13T04:00:56,893 adding 'galaxy/tools/bundled/data_source/import.xml' 2025-12-13T04:00:56,894 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2025-12-13T04:00:56,896 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2025-12-13T04:00:56,897 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2025-12-13T04:00:56,898 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2025-12-13T04:00:56,900 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2025-12-13T04:00:56,901 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2025-12-13T04:00:56,902 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2025-12-13T04:00:56,904 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2025-12-13T04:00:56,905 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2025-12-13T04:00:56,906 adding 'galaxy/tools/bundled/data_source/sra.xml' 2025-12-13T04:00:56,907 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2025-12-13T04:00:56,909 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2025-12-13T04:00:56,910 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2025-12-13T04:00:56,912 adding 'galaxy/tools/bundled/data_source/upload.py' 2025-12-13T04:00:56,914 adding 'galaxy/tools/bundled/data_source/upload.xml' 2025-12-13T04:00:56,916 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2025-12-13T04:00:56,917 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2025-12-13T04:00:56,918 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2025-12-13T04:00:56,919 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2025-12-13T04:00:56,921 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2025-12-13T04:00:56,922 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2025-12-13T04:00:56,924 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2025-12-13T04:00:56,926 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2025-12-13T04:00:56,927 adding 'galaxy/tools/bundled/extract/__init__.py' 2025-12-13T04:00:56,930 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2025-12-13T04:00:56,931 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2025-12-13T04:00:56,933 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2025-12-13T04:00:56,934 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2025-12-13T04:00:56,937 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2025-12-13T04:00:56,939 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2025-12-13T04:00:56,940 adding 'galaxy/tools/bundled/filters/__init__.py' 2025-12-13T04:00:56,941 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2025-12-13T04:00:56,942 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2025-12-13T04:00:56,944 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2025-12-13T04:00:56,945 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2025-12-13T04:00:56,947 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2025-12-13T04:00:56,948 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2025-12-13T04:00:56,950 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2025-12-13T04:00:56,951 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2025-12-13T04:00:56,952 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2025-12-13T04:00:56,954 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2025-12-13T04:00:56,955 adding 'galaxy/tools/bundled/filters/catWrapper.py' 2025-12-13T04:00:56,956 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2025-12-13T04:00:56,957 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2025-12-13T04:00:56,959 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2025-12-13T04:00:56,960 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2025-12-13T04:00:56,961 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2025-12-13T04:00:56,962 adding 'galaxy/tools/bundled/filters/compare.xml' 2025-12-13T04:00:56,964 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2025-12-13T04:00:56,965 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2025-12-13T04:00:56,966 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2025-12-13T04:00:56,968 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2025-12-13T04:00:56,969 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2025-12-13T04:00:56,971 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2025-12-13T04:00:56,972 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2025-12-13T04:00:56,973 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2025-12-13T04:00:56,975 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2025-12-13T04:00:56,976 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2025-12-13T04:00:56,977 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2025-12-13T04:00:56,979 adding 'galaxy/tools/bundled/filters/grep.py' 2025-12-13T04:00:56,981 adding 'galaxy/tools/bundled/filters/grep.xml' 2025-12-13T04:00:56,982 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2025-12-13T04:00:56,984 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2025-12-13T04:00:56,985 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2025-12-13T04:00:56,986 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2025-12-13T04:00:56,989 adding 'galaxy/tools/bundled/filters/join.py' 2025-12-13T04:00:56,990 adding 'galaxy/tools/bundled/filters/joinWrapper.py' 2025-12-13T04:00:56,992 adding 'galaxy/tools/bundled/filters/joiner.xml' 2025-12-13T04:00:56,993 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2025-12-13T04:00:56,995 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2025-12-13T04:00:56,996 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2025-12-13T04:00:56,997 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2025-12-13T04:00:56,998 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2025-12-13T04:00:57,000 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2025-12-13T04:00:57,001 adding 'galaxy/tools/bundled/filters/pasteWrapper.pl' 2025-12-13T04:00:57,003 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2025-12-13T04:00:57,004 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2025-12-13T04:00:57,006 adding 'galaxy/tools/bundled/filters/randomlines.py' 2025-12-13T04:00:57,007 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2025-12-13T04:00:57,008 adding 'galaxy/tools/bundled/filters/remove_beginning.pl' 2025-12-13T04:00:57,010 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2025-12-13T04:00:57,011 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2025-12-13T04:00:57,013 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2025-12-13T04:00:57,019 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2025-12-13T04:00:57,020 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2025-12-13T04:00:57,022 adding 'galaxy/tools/bundled/filters/sorter.xml' 2025-12-13T04:00:57,024 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2025-12-13T04:00:57,025 adding 'galaxy/tools/bundled/filters/trimmer.py' 2025-12-13T04:00:57,027 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2025-12-13T04:00:57,029 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2025-12-13T04:00:57,030 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2025-12-13T04:00:57,032 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2025-12-13T04:00:57,033 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2025-12-13T04:00:57,034 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2025-12-13T04:00:57,036 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2025-12-13T04:00:57,037 adding 'galaxy/tools/bundled/filters/uniq.py' 2025-12-13T04:00:57,039 adding 'galaxy/tools/bundled/filters/uniq.xml' 2025-12-13T04:00:57,040 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2025-12-13T04:00:57,042 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2025-12-13T04:00:57,043 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2025-12-13T04:00:57,044 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2025-12-13T04:00:57,046 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2025-12-13T04:00:57,047 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2025-12-13T04:00:57,049 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2025-12-13T04:00:57,051 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2025-12-13T04:00:57,052 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2025-12-13T04:00:57,054 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2025-12-13T04:00:57,055 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2025-12-13T04:00:57,056 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2025-12-13T04:00:57,057 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 2025-12-13T04:00:57,060 adding 'galaxy/tools/bundled/interactive/Rprofile.R' 2025-12-13T04:00:57,061 adding 'galaxy/tools/bundled/interactive/default_notebook.ipynb' 2025-12-13T04:00:57,063 adding 'galaxy/tools/bundled/interactive/interactivetool_askomics.xml' 2025-12-13T04:00:57,064 adding 'galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml' 2025-12-13T04:00:57,065 adding 'galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml' 2025-12-13T04:00:57,067 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml' 2025-12-13T04:00:57,068 adding 'galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml' 2025-12-13T04:00:57,070 adding 'galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml' 2025-12-13T04:00:57,071 adding 'galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml' 2025-12-13T04:00:57,073 adding 'galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml' 2025-12-13T04:00:57,074 adding 'galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml' 2025-12-13T04:00:57,076 adding 'galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml' 2025-12-13T04:00:57,078 adding 'galaxy/tools/bundled/interactive/interactivetool_higlass.xml' 2025-12-13T04:00:57,079 adding 'galaxy/tools/bundled/interactive/interactivetool_ilastik.xml' 2025-12-13T04:00:57,081 adding 'galaxy/tools/bundled/interactive/interactivetool_isee.xml' 2025-12-13T04:00:57,083 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml' 2025-12-13T04:00:57,085 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml' 2025-12-13T04:00:57,087 adding 'galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml' 2025-12-13T04:00:57,089 adding 'galaxy/tools/bundled/interactive/interactivetool_metashark.xml' 2025-12-13T04:00:57,091 adding 'galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml' 2025-12-13T04:00:57,093 adding 'galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml' 2025-12-13T04:00:57,095 adding 'galaxy/tools/bundled/interactive/interactivetool_neo4j.xml' 2025-12-13T04:00:57,096 adding 'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2025-12-13T04:00:57,097 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2025-12-13T04:00:57,099 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2025-12-13T04:00:57,100 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2025-12-13T04:00:57,101 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2025-12-13T04:00:57,103 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2025-12-13T04:00:57,104 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2025-12-13T04:00:57,107 adding 'galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml' 2025-12-13T04:00:57,108 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2025-12-13T04:00:57,110 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2025-12-13T04:00:57,111 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml' 2025-12-13T04:00:57,112 adding 'galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml' 2025-12-13T04:00:57,114 adding 'galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml' 2025-12-13T04:00:57,115 adding 'galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml' 2025-12-13T04:00:57,116 adding 'galaxy/tools/bundled/interactive/interactivetool_wallace.xml' 2025-12-13T04:00:57,118 adding 'galaxy/tools/bundled/interactive/interactivetool_wilson.xml' 2025-12-13T04:00:57,121 adding 'galaxy/tools/bundled/interactive/simtext_app.R' 2025-12-13T04:00:57,123 adding 'galaxy/tools/bundled/maf/__init__.py' 2025-12-13T04:00:57,124 adding 'galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml' 2025-12-13T04:00:57,126 adding 'galaxy/tools/bundled/maf/interval2maf.py' 2025-12-13T04:00:57,128 adding 'galaxy/tools/bundled/maf/interval2maf.xml' 2025-12-13T04:00:57,129 adding 'galaxy/tools/bundled/maf/interval2maf_pairwise.xml' 2025-12-13T04:00:57,131 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py' 2025-12-13T04:00:57,133 adding 'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml' 2025-12-13T04:00:57,134 adding 'galaxy/tools/bundled/maf/macros.xml' 2025-12-13T04:00:57,135 adding 'galaxy/tools/bundled/maf/maf_by_block_number.py' 2025-12-13T04:00:57,136 adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml' 2025-12-13T04:00:57,138 adding 'galaxy/tools/bundled/maf/maf_filter.py' 2025-12-13T04:00:57,140 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2025-12-13T04:00:57,141 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2025-12-13T04:00:57,142 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2025-12-13T04:00:57,144 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2025-12-13T04:00:57,145 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2025-12-13T04:00:57,147 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2025-12-13T04:00:57,148 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2025-12-13T04:00:57,150 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2025-12-13T04:00:57,151 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2025-12-13T04:00:57,153 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2025-12-13T04:00:57,154 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 2025-12-13T04:00:57,156 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py' 2025-12-13T04:00:57,157 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml' 2025-12-13T04:00:57,159 adding 'galaxy/tools/bundled/maf/maf_to_bed.py' 2025-12-13T04:00:57,161 adding 'galaxy/tools/bundled/maf/maf_to_bed.xml' 2025-12-13T04:00:57,162 adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py' 2025-12-13T04:00:57,164 adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml' 2025-12-13T04:00:57,165 adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py' 2025-12-13T04:00:57,167 adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py' 2025-12-13T04:00:57,168 adding 'galaxy/tools/bundled/maf/maf_to_interval.py' 2025-12-13T04:00:57,170 adding 'galaxy/tools/bundled/maf/maf_to_interval.xml' 2025-12-13T04:00:57,171 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py' 2025-12-13T04:00:57,173 adding 'galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml' 2025-12-13T04:00:57,175 adding 'galaxy/tools/bundled/meme/meme.xml' 2025-12-13T04:00:57,177 adding 'galaxy/tools/bundled/metag_tools/__init__.py' 2025-12-13T04:00:57,179 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.py' 2025-12-13T04:00:57,180 adding 'galaxy/tools/bundled/metag_tools/blat_wrapper.xml' 2025-12-13T04:00:57,181 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py' 2025-12-13T04:00:57,183 adding 'galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml' 2025-12-13T04:00:57,186 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.py' 2025-12-13T04:00:57,189 adding 'galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml' 2025-12-13T04:00:57,191 adding 'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl' 2025-12-13T04:00:57,192 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py' 2025-12-13T04:00:57,194 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml' 2025-12-13T04:00:57,195 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py' 2025-12-13T04:00:57,197 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml' 2025-12-13T04:00:57,198 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py' 2025-12-13T04:00:57,200 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml' 2025-12-13T04:00:57,201 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py' 2025-12-13T04:00:57,203 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml' 2025-12-13T04:00:57,205 adding 'galaxy/tools/bundled/ngs_simulation/__init__.py' 2025-12-13T04:00:57,207 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.py' 2025-12-13T04:00:57,209 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml' 2025-12-13T04:00:57,211 adding 'galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh' 2025-12-13T04:00:57,212 adding 'galaxy/tools/bundled/phenotype_association/__init__.py' 2025-12-13T04:00:57,214 adding 'galaxy/tools/bundled/phenotype_association/beam.xml' 2025-12-13T04:00:57,215 adding 'galaxy/tools/bundled/phenotype_association/gpass.pl' 2025-12-13T04:00:57,216 adding 'galaxy/tools/bundled/phenotype_association/gpass.xml' 2025-12-13T04:00:57,218 adding 'galaxy/tools/bundled/phenotype_association/ldtools.xml' 2025-12-13T04:00:57,219 adding 'galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh' 2025-12-13T04:00:57,221 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.pl' 2025-12-13T04:00:57,222 adding 'galaxy/tools/bundled/phenotype_association/linkToDavid.xml' 2025-12-13T04:00:57,224 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.pl' 2025-12-13T04:00:57,225 adding 'galaxy/tools/bundled/phenotype_association/linkToGProfile.xml' 2025-12-13T04:00:57,227 adding 'galaxy/tools/bundled/phenotype_association/lped_to_geno.pl' 2025-12-13T04:00:57,229 adding 'galaxy/tools/bundled/phenotype_association/lps.xml' 2025-12-13T04:00:57,230 adding 'galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh' 2025-12-13T04:00:57,232 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.pl' 2025-12-13T04:00:57,234 adding 'galaxy/tools/bundled/phenotype_association/master2gd_snp.xml' 2025-12-13T04:00:57,235 adding 'galaxy/tools/bundled/phenotype_association/master2pg.pl' 2025-12-13T04:00:57,237 adding 'galaxy/tools/bundled/phenotype_association/master2pg.xml' 2025-12-13T04:00:57,238 adding 'galaxy/tools/bundled/phenotype_association/mergeSnps.pl' 2025-12-13T04:00:57,240 adding 'galaxy/tools/bundled/phenotype_association/pagetag.py' 2025-12-13T04:00:57,242 adding 'galaxy/tools/bundled/phenotype_association/pass.xml' 2025-12-13T04:00:57,243 adding 'galaxy/tools/bundled/phenotype_association/pass_wrapper.sh' 2025-12-13T04:00:57,245 adding 'galaxy/tools/bundled/phenotype_association/senatag.py' 2025-12-13T04:00:57,246 adding 'galaxy/tools/bundled/phenotype_association/sift.xml' 2025-12-13T04:00:57,248 adding 'galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh' 2025-12-13T04:00:57,250 adding 'galaxy/tools/bundled/plotting/bar_chart.py' 2025-12-13T04:00:57,251 adding 'galaxy/tools/bundled/plotting/bar_chart.xml' 2025-12-13T04:00:57,253 adding 'galaxy/tools/bundled/plotting/boxplot.xml' 2025-12-13T04:00:57,255 adding 'galaxy/tools/bundled/solid_tools/__init__.py' 2025-12-13T04:00:57,257 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py' 2025-12-13T04:00:57,258 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml' 2025-12-13T04:00:57,260 adding 'galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py' 2025-12-13T04:00:57,261 adding 'galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh' 2025-12-13T04:00:57,263 adding 'galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml' 2025-12-13T04:00:57,264 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.py' 2025-12-13T04:00:57,265 adding 'galaxy/tools/bundled/solid_tools/solid_qual_stats.xml' 2025-12-13T04:00:57,267 adding 'galaxy/tools/bundled/sr_assembly/__init__.py' 2025-12-13T04:00:57,269 adding 'galaxy/tools/bundled/sr_assembly/velvetg.xml' 2025-12-13T04:00:57,270 adding 'galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py' 2025-12-13T04:00:57,272 adding 'galaxy/tools/bundled/sr_assembly/velveth.xml' 2025-12-13T04:00:57,273 adding 'galaxy/tools/bundled/sr_assembly/velveth_wrapper.py' 2025-12-13T04:00:57,277 adding 'galaxy/tools/bundled/sr_mapping/PerM.xml' 2025-12-13T04:00:57,278 adding 'galaxy/tools/bundled/sr_mapping/__init__.py' 2025-12-13T04:00:57,280 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.py' 2025-12-13T04:00:57,283 adding 'galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml' 2025-12-13T04:00:57,284 adding 'galaxy/tools/bundled/sr_mapping/fastq_statistics.xml' 2025-12-13T04:00:57,286 adding 'galaxy/tools/bundled/sr_mapping/mosaik.xml' 2025-12-13T04:00:57,288 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.py' 2025-12-13T04:00:57,289 adding 'galaxy/tools/bundled/sr_mapping/srma_wrapper.xml' 2025-12-13T04:00:57,292 adding 'galaxy/tools/bundled/stats/__init__.py' 2025-12-13T04:00:57,293 adding 'galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml' 2025-12-13T04:00:57,295 adding 'galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py' 2025-12-13T04:00:57,297 adding 'galaxy/tools/bundled/stats/filtering.py' 2025-12-13T04:00:57,299 adding 'galaxy/tools/bundled/stats/filtering.xml' 2025-12-13T04:00:57,301 adding 'galaxy/tools/bundled/stats/filtering_1_1_0.xml' 2025-12-13T04:00:57,302 adding 'galaxy/tools/bundled/stats/grouping.py' 2025-12-13T04:00:57,304 adding 'galaxy/tools/bundled/stats/grouping.xml' 2025-12-13T04:00:57,306 adding 'galaxy/tools/bundled/stats/gsummary.py' 2025-12-13T04:00:57,307 adding 'galaxy/tools/bundled/stats/gsummary.xml' 2025-12-13T04:00:57,308 adding 'galaxy/tools/bundled/stats/r_wrapper.sh' 2025-12-13T04:00:57,311 adding 'galaxy/tools/data/__init__.py' 2025-12-13T04:00:57,312 adding 'galaxy/tools/data_manager/__init__.py' 2025-12-13T04:00:57,314 adding 'galaxy/tools/data_manager/manager.py' 2025-12-13T04:00:57,316 adding 'galaxy/tools/error_reports/__init__.py' 2025-12-13T04:00:57,318 adding 'galaxy/tools/error_reports/plugins/__init__.py' 2025-12-13T04:00:57,320 adding 'galaxy/tools/error_reports/plugins/base_git.py' 2025-12-13T04:00:57,321 adding 'galaxy/tools/error_reports/plugins/email.py' 2025-12-13T04:00:57,322 adding 'galaxy/tools/error_reports/plugins/github.py' 2025-12-13T04:00:57,324 adding 'galaxy/tools/error_reports/plugins/gitlab.py' 2025-12-13T04:00:57,326 adding 'galaxy/tools/error_reports/plugins/influxdb.py' 2025-12-13T04:00:57,327 adding 'galaxy/tools/error_reports/plugins/json.py' 2025-12-13T04:00:57,329 adding 'galaxy/tools/error_reports/plugins/sentry.py' 2025-12-13T04:00:57,330 adding 'galaxy/tools/error_reports/plugins/slack.py' 2025-12-13T04:00:57,332 adding 'galaxy/tools/expressions/__init__.py' 2025-12-13T04:00:57,333 adding 'galaxy/tools/expressions/cwlNodeEngine.js' 2025-12-13T04:00:57,335 adding 'galaxy/tools/expressions/evaluation.py' 2025-12-13T04:00:57,336 adding 'galaxy/tools/expressions/script.py' 2025-12-13T04:00:57,337 adding 'galaxy/tools/expressions/util.py' 2025-12-13T04:00:57,338 adding 'galaxy/tools/fetch/__init__.py' 2025-12-13T04:00:57,341 adding 'galaxy/tools/fetch/workbooks.py' 2025-12-13T04:00:57,343 adding 'galaxy/tools/filters/__init__.py' 2025-12-13T04:00:57,345 adding 'galaxy/tools/imp_exp/__init__.py' 2025-12-13T04:00:57,347 adding 'galaxy/tools/imp_exp/exp_history_to_archive.xml' 2025-12-13T04:00:57,348 adding 'galaxy/tools/imp_exp/exp_history_to_uri.xml' 2025-12-13T04:00:57,349 adding 'galaxy/tools/imp_exp/export_history.py' 2025-12-13T04:00:57,351 adding 'galaxy/tools/imp_exp/imp_history_from_archive.xml' 2025-12-13T04:00:57,352 adding 'galaxy/tools/imp_exp/unpack_tar_gz_archive.py' 2025-12-13T04:00:57,356 adding 'galaxy/tools/parameters/__init__.py' 2025-12-13T04:00:57,369 adding 'galaxy/tools/parameters/basic.py' 2025-12-13T04:00:57,371 adding 'galaxy/tools/parameters/cancelable_request.py' 2025-12-13T04:00:57,373 adding 'galaxy/tools/parameters/dataset_matcher.py' 2025-12-13T04:00:57,378 adding 'galaxy/tools/parameters/dynamic_options.py' 2025-12-13T04:00:57,382 adding 'galaxy/tools/parameters/grouping.py' 2025-12-13T04:00:57,384 adding 'galaxy/tools/parameters/input_translation.py' 2025-12-13T04:00:57,386 adding 'galaxy/tools/parameters/meta.py' 2025-12-13T04:00:57,388 adding 'galaxy/tools/parameters/options.py' 2025-12-13T04:00:57,389 adding 'galaxy/tools/parameters/populate_model.py' 2025-12-13T04:00:57,391 adding 'galaxy/tools/parameters/sanitize.py' 2025-12-13T04:00:57,393 adding 'galaxy/tools/parameters/validation.py' 2025-12-13T04:00:57,394 adding 'galaxy/tools/parameters/workflow_utils.py' 2025-12-13T04:00:57,396 adding 'galaxy/tools/parameters/wrapped.py' 2025-12-13T04:00:57,398 adding 'galaxy/tools/parameters/wrapped_json.py' 2025-12-13T04:00:57,401 adding 'galaxy/tools/search/__init__.py' 2025-12-13T04:00:57,403 adding 'galaxy/tools/util/__init__.py' 2025-12-13T04:00:57,407 adding 'galaxy/tools/util/maf_utilities.py' 2025-12-13T04:00:57,409 adding 'galaxy/tools/util/galaxyops/__init__.py' 2025-12-13T04:00:57,411 adding 'galaxy/visualization/__init__.py' 2025-12-13T04:00:57,413 adding 'galaxy/visualization/genomes.py' 2025-12-13T04:00:57,415 adding 'galaxy/visualization/data_providers/__init__.py' 2025-12-13T04:00:57,416 adding 'galaxy/visualization/data_providers/basic.py' 2025-12-13T04:00:57,418 adding 'galaxy/visualization/data_providers/cigar.py' 2025-12-13T04:00:57,424 adding 'galaxy/visualization/data_providers/genome.py' 2025-12-13T04:00:57,426 adding 'galaxy/visualization/data_providers/registry.py' 2025-12-13T04:00:57,428 adding 'galaxy/visualization/data_providers/phyloviz/__init__.py' 2025-12-13T04:00:57,430 adding 'galaxy/visualization/data_providers/phyloviz/baseparser.py' 2025-12-13T04:00:57,431 adding 'galaxy/visualization/data_providers/phyloviz/newickparser.py' 2025-12-13T04:00:57,433 adding 'galaxy/visualization/data_providers/phyloviz/nexusparser.py' 2025-12-13T04:00:57,434 adding 'galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py' 2025-12-13T04:00:57,436 adding 'galaxy/visualization/genome/__init__.py' 2025-12-13T04:00:57,438 adding 'galaxy/visualization/plugins/__init__.py' 2025-12-13T04:00:57,441 adding 'galaxy/visualization/plugins/config_parser.py' 2025-12-13T04:00:57,443 adding 'galaxy/visualization/plugins/datasource_testing.py' 2025-12-13T04:00:57,445 adding 'galaxy/visualization/plugins/plugin.py' 2025-12-13T04:00:57,447 adding 'galaxy/visualization/plugins/registry.py' 2025-12-13T04:00:57,449 adding 'galaxy/visualization/plugins/resource_parser.py' 2025-12-13T04:00:57,450 adding 'galaxy/visualization/plugins/utils.py' 2025-12-13T04:00:57,451 adding 'galaxy/visualization/tracks/__init__.py' 2025-12-13T04:00:57,453 adding 'galaxy/webhooks/__init__.py' 2025-12-13T04:00:57,455 adding 'galaxy/work/__init__.py' 2025-12-13T04:00:57,456 adding 'galaxy/work/context.py' 2025-12-13T04:00:57,458 adding 'galaxy/workflow/__init__.py' 2025-12-13T04:00:57,460 adding 'galaxy/workflow/errors.py' 2025-12-13T04:00:57,462 adding 'galaxy/workflow/extract.py' 2025-12-13T04:00:57,476 adding 'galaxy/workflow/modules.py' 2025-12-13T04:00:57,479 adding 'galaxy/workflow/render.py' 2025-12-13T04:00:57,483 adding 'galaxy/workflow/run.py' 2025-12-13T04:00:57,486 adding 'galaxy/workflow/run_request.py' 2025-12-13T04:00:57,489 adding 'galaxy/workflow/scheduling_manager.py' 2025-12-13T04:00:57,491 adding 'galaxy/workflow/steps.py' 2025-12-13T04:00:57,492 adding 'galaxy/workflow/trs_proxy.py' 2025-12-13T04:00:57,494 adding 'galaxy/workflow/workflow_parameter_input_definitions.py' 2025-12-13T04:00:57,495 adding 'galaxy/workflow/refactor/__init__.py' 2025-12-13T04:00:57,498 adding 'galaxy/workflow/refactor/execute.py' 2025-12-13T04:00:57,500 adding 'galaxy/workflow/refactor/schema.py' 2025-12-13T04:00:57,502 adding 'galaxy/workflow/reports/__init__.py' 2025-12-13T04:00:57,504 adding 'galaxy/workflow/reports/generators/__init__.py' 2025-12-13T04:00:57,505 adding 'galaxy/workflow/reports/generators/markdown.py' 2025-12-13T04:00:57,507 adding 'galaxy/workflow/resources/__init__.py' 2025-12-13T04:00:57,509 adding 'galaxy/workflow/resources/example.py.sample' 2025-12-13T04:00:57,510 adding 'galaxy/workflow/schedulers/__init__.py' 2025-12-13T04:00:57,512 adding 'galaxy/workflow/schedulers/core.py' 2025-12-13T04:00:57,515 adding 'galaxy_app-25.1.dev0.dist-info/licenses/LICENSE' 2025-12-13T04:00:57,517 adding 'galaxy_ext/__init__.py' 2025-12-13T04:00:57,518 adding 'galaxy_ext/py.typed' 2025-12-13T04:00:57,520 adding 'galaxy_ext/container_monitor/__init__.py' 2025-12-13T04:00:57,521 adding 'galaxy_ext/container_monitor/monitor.py' 2025-12-13T04:00:57,523 adding 'galaxy_ext/expressions/__init__.py' 2025-12-13T04:00:57,524 adding 'galaxy_ext/expressions/handle_job.py' 2025-12-13T04:00:57,526 adding 'galaxy_ext/metadata/__init__.py' 2025-12-13T04:00:57,527 adding 'galaxy_ext/metadata/set_metadata.py' 2025-12-13T04:00:57,529 adding 'tool_shed_client/__init__.py' 2025-12-13T04:00:57,530 adding 'tool_shed_client/py.typed' 2025-12-13T04:00:57,531 adding 'tool_shed_client/trs_util.py' 2025-12-13T04:00:57,534 adding 'tool_shed_client/schema/__init__.py' 2025-12-13T04:00:57,536 adding 'tool_shed_client/schema/trs.py' 2025-12-13T04:00:57,537 adding 'tool_shed_client/schema/trs_service_info.py' 2025-12-13T04:00:57,549 adding 'galaxy_app-25.1.dev0.dist-info/METADATA' 2025-12-13T04:00:57,551 adding 'galaxy_app-25.1.dev0.dist-info/WHEEL' 2025-12-13T04:00:57,552 adding 'galaxy_app-25.1.dev0.dist-info/entry_points.txt' 2025-12-13T04:00:57,553 adding 'galaxy_app-25.1.dev0.dist-info/top_level.txt' 2025-12-13T04:00:57,563 adding 'galaxy_app-25.1.dev0.dist-info/RECORD' 2025-12-13T04:00:57,589 removing build/bdist.linux-armv7l/wheel 2025-12-13T04:00:57,842 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2025-12-13T04:00:57,880 Created wheel for galaxy-app: filename=galaxy_app-25.1.dev0-py3-none-any.whl size=1560074 sha256=61192b47a8f5aa09dfa50eab6cc409838da6a6c65b1bc2362ee8b549a053800d 2025-12-13T04:00:57,881 Stored in directory: /tmp/pip-ephem-wheel-cache-twh9ph4v/wheels/c5/8a/3c/bd85c929e4cd43b4b908e022441746895dc3b412ed45f63f90 2025-12-13T04:00:57,943 Successfully built galaxy-app 2025-12-13T04:00:57,989 Removed build tracker: '/tmp/pip-build-tracker-dwp_dk8z'