2025-12-14T11:16:40,866 Created temporary directory: /tmp/pip-ephem-wheel-cache-keu3v9mi
2025-12-14T11:16:40,868 Created temporary directory: /tmp/pip-build-tracker-ku09w4zs
2025-12-14T11:16:40,868 Initialized build tracking at /tmp/pip-build-tracker-ku09w4zs
2025-12-14T11:16:40,869 Created build tracker: /tmp/pip-build-tracker-ku09w4zs
2025-12-14T11:16:40,869 Entered build tracker: /tmp/pip-build-tracker-ku09w4zs
2025-12-14T11:16:40,870 Created temporary directory: /tmp/pip-wheel-az5tut92
2025-12-14T11:16:40,873 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-14T11:16:40,876 Created temporary directory: /tmp/pip-ephem-wheel-cache-3jjr3x6p
2025-12-14T11:16:40,898 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-14T11:16:40,901 2 location(s) to search for versions of phylogenie:
2025-12-14T11:16:40,901 * https://pypi.org/simple/phylogenie/
2025-12-14T11:16:40,901 * https://www.piwheels.org/simple/phylogenie/
2025-12-14T11:16:40,902 Fetching project page and analyzing links: https://pypi.org/simple/phylogenie/
2025-12-14T11:16:40,903 Getting page https://pypi.org/simple/phylogenie/
2025-12-14T11:16:40,904 Found index url https://pypi.org/simple
2025-12-14T11:16:41,116 Fetched page https://pypi.org/simple/phylogenie/ as application/vnd.pypi.simple.v1+json
2025-12-14T11:16:41,138   Skipping link: No binaries permitted for phylogenie: https://files.pythonhosted.org/packages/56/43/24fcdab49bcf179eb98a61cfa6f7c0a32a8a5443de93e775e805be02b7f9/phylogenie-1.0.0-py3-none-any.whl (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10)
2025-12-14T11:16:41,139   Found link https://files.pythonhosted.org/packages/f5/f9/714d94a24ed368a4c32e7623ca82fff034e4eeb5a8dc0ab9aa9423b13009/phylogenie-1.0.0.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 1.0.0
2025-12-14T11:16:41,140   Skipping link: No binaries permitted for phylogenie: https://files.pythonhosted.org/packages/27/4d/fc5642b4a034aee934ec87f382f0db9920332c69fa4f4a2a9f0dd4be36f2/phylogenie-1.0.1-py3-none-any.whl (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10)
2025-12-14T11:16:41,141   Found link https://files.pythonhosted.org/packages/8e/4d/5824d4dbfc08dba97939d0f0367c3931b408a56bb1f0561ba53b908002cb/phylogenie-1.0.1.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 1.0.1
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2025-12-14T11:16:41,162   Found link https://files.pythonhosted.org/packages/90/6c/ef681b0b4581ea3d2dc5a18f2f49f35781df295b26cd2033014bc523be7b/phylogenie-2.0.4.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 2.0.4
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2025-12-14T11:16:41,243   Found link https://files.pythonhosted.org/packages/51/d3/94ef36061c7236f373a97e9fe8361de7c137945210e260ba9493c310c00c/phylogenie-3.1.5.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:>=3.10), version: 3.1.5
2025-12-14T11:16:41,244 Fetching project page and analyzing links: https://www.piwheels.org/simple/phylogenie/
2025-12-14T11:16:41,245 Getting page https://www.piwheels.org/simple/phylogenie/
2025-12-14T11:16:41,247 Found index url https://www.piwheels.org/simple
2025-12-14T11:16:41,428 Fetched page https://www.piwheels.org/simple/phylogenie/ as text/html
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2025-12-14T11:16:41,474   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.6-py3-none-any.whl#sha256=5bd63d3f4de1347056f057a8f5f159266c3c8711d47dd71e4889be828f5d4b3a (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-14T11:16:41,474   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.5-py3-none-any.whl#sha256=44eb8d3714277f483a1010c46925f0e51ce5fbcaffead847be6cd5e51bac170f (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-14T11:16:41,475   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.4-py3-none-any.whl#sha256=44d458332c5ab36c22d0c77c559987eb9f80ce84b4c88acc79533e5871a6b406 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-14T11:16:41,475   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.3-py3-none-any.whl#sha256=c94a2156b526262a92f7c78a61c824b706b8b8cad72c8a2224fa6cbe832a3d15 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-14T11:16:41,476   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.2-py3-none-any.whl#sha256=d23def6419d49da378586dfec1f52629f6b0992eea4239230e873b2351d9ce77 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-14T11:16:41,476   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.1-py3-none-any.whl#sha256=1eab55d4c55447f99880b7aae8f4087a193021ce90f4997d484917dce40f39d3 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-14T11:16:41,477   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.0-py3-none-any.whl#sha256=f047168c355546977470455eb8bdfbaa999d6c8ddf72b6a51d980727a420a857 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-14T11:16:41,477 Skipping link: not a file: https://www.piwheels.org/simple/phylogenie/
2025-12-14T11:16:41,478 Skipping link: not a file: https://pypi.org/simple/phylogenie/
2025-12-14T11:16:41,503 Given no hashes to check 1 links for project 'phylogenie': discarding no candidates
2025-12-14T11:16:41,522 Collecting phylogenie==3.1.5
2025-12-14T11:16:41,524   Created temporary directory: /tmp/pip-unpack-5_zda_3e
2025-12-14T11:16:41,656   Downloading phylogenie-3.1.5.tar.gz (31 kB)
2025-12-14T11:16:41,768   Added phylogenie==3.1.5 from https://files.pythonhosted.org/packages/51/d3/94ef36061c7236f373a97e9fe8361de7c137945210e260ba9493c310c00c/phylogenie-3.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-ku09w4zs'
2025-12-14T11:16:41,772   Created temporary directory: /tmp/pip-build-env-gamo5hzx
2025-12-14T11:16:41,777   Installing build dependencies: started
2025-12-14T11:16:41,778   Running command pip subprocess to install build dependencies
2025-12-14T11:16:42,948   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-12-14T11:16:43,606   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-14T11:16:43,629   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-14T11:16:45,393   Collecting setuptools>=42
2025-12-14T11:16:45,507     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-12-14T11:16:48,431   Installing collected packages: setuptools
2025-12-14T11:16:52,090   Successfully installed setuptools-80.9.0
2025-12-14T11:16:52,357   Installing build dependencies: finished with status 'done'
2025-12-14T11:16:52,363   Getting requirements to build wheel: started
2025-12-14T11:16:52,364   Running command Getting requirements to build wheel
2025-12-14T11:16:53,049   running egg_info
2025-12-14T11:16:53,056   writing src/phylogenie.egg-info/PKG-INFO
2025-12-14T11:16:53,059   writing dependency_links to src/phylogenie.egg-info/dependency_links.txt
2025-12-14T11:16:53,061   writing entry points to src/phylogenie.egg-info/entry_points.txt
2025-12-14T11:16:53,063   writing requirements to src/phylogenie.egg-info/requires.txt
2025-12-14T11:16:53,064   writing top-level names to src/phylogenie.egg-info/top_level.txt
2025-12-14T11:16:53,092   reading manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-14T11:16:53,096   adding license file 'LICENSE.txt'
2025-12-14T11:16:53,100   writing manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-14T11:16:53,197   Getting requirements to build wheel: finished with status 'done'
2025-12-14T11:16:53,201   Created temporary directory: /tmp/pip-modern-metadata-7e9q52n9
2025-12-14T11:16:53,203   Preparing metadata (pyproject.toml): started
2025-12-14T11:16:53,204   Running command Preparing metadata (pyproject.toml)
2025-12-14T11:16:53,857   running dist_info
2025-12-14T11:16:53,869   creating /tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info
2025-12-14T11:16:53,870   writing /tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/PKG-INFO
2025-12-14T11:16:53,874   writing dependency_links to /tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/dependency_links.txt
2025-12-14T11:16:53,876   writing entry points to /tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/entry_points.txt
2025-12-14T11:16:53,877   writing requirements to /tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/requires.txt
2025-12-14T11:16:53,878   writing top-level names to /tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/top_level.txt
2025-12-14T11:16:53,880   writing manifest file '/tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/SOURCES.txt'
2025-12-14T11:16:53,905   reading manifest file '/tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/SOURCES.txt'
2025-12-14T11:16:53,908   adding license file 'LICENSE.txt'
2025-12-14T11:16:53,911   writing manifest file '/tmp/pip-modern-metadata-7e9q52n9/phylogenie.egg-info/SOURCES.txt'
2025-12-14T11:16:53,913   creating '/tmp/pip-modern-metadata-7e9q52n9/phylogenie-3.1.5.dist-info'
2025-12-14T11:16:54,043   Preparing metadata (pyproject.toml): finished with status 'done'
2025-12-14T11:16:54,048   Source in /tmp/pip-wheel-az5tut92/phylogenie_29692d61440048a89e213627653c9e1f has version 3.1.5, which satisfies requirement phylogenie==3.1.5 from https://files.pythonhosted.org/packages/51/d3/94ef36061c7236f373a97e9fe8361de7c137945210e260ba9493c310c00c/phylogenie-3.1.5.tar.gz
2025-12-14T11:16:54,049   Removed phylogenie==3.1.5 from https://files.pythonhosted.org/packages/51/d3/94ef36061c7236f373a97e9fe8361de7c137945210e260ba9493c310c00c/phylogenie-3.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-ku09w4zs'
2025-12-14T11:16:54,054 Created temporary directory: /tmp/pip-unpack-91b99zqu
2025-12-14T11:16:54,055 Building wheels for collected packages: phylogenie
2025-12-14T11:16:54,059   Created temporary directory: /tmp/pip-wheel-f1ty4e8a
2025-12-14T11:16:54,060   Destination directory: /tmp/pip-wheel-f1ty4e8a
2025-12-14T11:16:54,062   Building wheel for phylogenie (pyproject.toml): started
2025-12-14T11:16:54,063   Running command Building wheel for phylogenie (pyproject.toml)
2025-12-14T11:16:54,694   running bdist_wheel
2025-12-14T11:16:54,717   running build
2025-12-14T11:16:54,718   running build_py
2025-12-14T11:16:54,725   creating build/lib/phylogenie
2025-12-14T11:16:54,727   copying src/phylogenie/mixins.py -> build/lib/phylogenie
2025-12-14T11:16:54,729   copying src/phylogenie/typings.py -> build/lib/phylogenie
2025-12-14T11:16:54,731   copying src/phylogenie/msa.py -> build/lib/phylogenie
2025-12-14T11:16:54,734   copying src/phylogenie/__init__.py -> build/lib/phylogenie
2025-12-14T11:16:54,736   copying src/phylogenie/main.py -> build/lib/phylogenie
2025-12-14T11:16:54,737   copying src/phylogenie/draw.py -> build/lib/phylogenie
2025-12-14T11:16:54,743   copying src/phylogenie/typeguards.py -> build/lib/phylogenie
2025-12-14T11:16:54,746   creating build/lib/phylogenie/skyline
2025-12-14T11:16:54,748   copying src/phylogenie/skyline/__init__.py -> build/lib/phylogenie/skyline
2025-12-14T11:16:54,750   copying src/phylogenie/skyline/matrix.py -> build/lib/phylogenie/skyline
2025-12-14T11:16:54,752   copying src/phylogenie/skyline/vector.py -> build/lib/phylogenie/skyline
2025-12-14T11:16:54,755   copying src/phylogenie/skyline/parameter.py -> build/lib/phylogenie/skyline
2025-12-14T11:16:54,758   creating build/lib/phylogenie/io
2025-12-14T11:16:54,759   copying src/phylogenie/io/__init__.py -> build/lib/phylogenie/io
2025-12-14T11:16:54,762   copying src/phylogenie/io/fasta.py -> build/lib/phylogenie/io
2025-12-14T11:16:54,765   creating build/lib/phylogenie/treesimulator
2025-12-14T11:16:54,766   copying src/phylogenie/treesimulator/utils.py -> build/lib/phylogenie/treesimulator
2025-12-14T11:16:54,768   copying src/phylogenie/treesimulator/model.py -> build/lib/phylogenie/treesimulator
2025-12-14T11:16:54,770   copying src/phylogenie/treesimulator/tree.py -> build/lib/phylogenie/treesimulator
2025-12-14T11:16:54,772   copying src/phylogenie/treesimulator/__init__.py -> build/lib/phylogenie/treesimulator
2025-12-14T11:16:54,775   copying src/phylogenie/treesimulator/gillespie.py -> build/lib/phylogenie/treesimulator
2025-12-14T11:16:54,777   copying src/phylogenie/treesimulator/features.py -> build/lib/phylogenie/treesimulator
2025-12-14T11:16:54,779   creating build/lib/phylogenie/generators
2025-12-14T11:16:54,780   copying src/phylogenie/generators/__init__.py -> build/lib/phylogenie/generators
2025-12-14T11:16:54,782   copying src/phylogenie/generators/configs.py -> build/lib/phylogenie/generators
2025-12-14T11:16:54,784   copying src/phylogenie/generators/typeguards.py -> build/lib/phylogenie/generators
2025-12-14T11:16:54,786   copying src/phylogenie/generators/trees.py -> build/lib/phylogenie/generators
2025-12-14T11:16:54,789   copying src/phylogenie/generators/factories.py -> build/lib/phylogenie/generators
2025-12-14T11:16:54,792   copying src/phylogenie/generators/dataset.py -> build/lib/phylogenie/generators
2025-12-14T11:16:54,794   copying src/phylogenie/generators/alisim.py -> build/lib/phylogenie/generators
2025-12-14T11:16:54,796   creating build/lib/phylogenie/treesimulator/events
2025-12-14T11:16:54,797   copying src/phylogenie/treesimulator/events/core.py -> build/lib/phylogenie/treesimulator/events
2025-12-14T11:16:54,800   copying src/phylogenie/treesimulator/events/mutations.py -> build/lib/phylogenie/treesimulator/events
2025-12-14T11:16:54,802   copying src/phylogenie/treesimulator/events/__init__.py -> build/lib/phylogenie/treesimulator/events
2025-12-14T11:16:54,804   copying src/phylogenie/treesimulator/events/base.py -> build/lib/phylogenie/treesimulator/events
2025-12-14T11:16:54,806   copying src/phylogenie/treesimulator/events/contact_tracing.py -> build/lib/phylogenie/treesimulator/events
2025-12-14T11:16:54,808   creating build/lib/phylogenie/treesimulator/io
2025-12-14T11:16:54,809   copying src/phylogenie/treesimulator/io/nexus.py -> build/lib/phylogenie/treesimulator/io
2025-12-14T11:16:54,811   copying src/phylogenie/treesimulator/io/__init__.py -> build/lib/phylogenie/treesimulator/io
2025-12-14T11:16:54,813   copying src/phylogenie/treesimulator/io/newick.py -> build/lib/phylogenie/treesimulator/io
2025-12-14T11:16:54,815   running egg_info
2025-12-14T11:16:54,827   writing src/phylogenie.egg-info/PKG-INFO
2025-12-14T11:16:54,830   writing dependency_links to src/phylogenie.egg-info/dependency_links.txt
2025-12-14T11:16:54,832   writing entry points to src/phylogenie.egg-info/entry_points.txt
2025-12-14T11:16:54,833   writing requirements to src/phylogenie.egg-info/requires.txt
2025-12-14T11:16:54,834   writing top-level names to src/phylogenie.egg-info/top_level.txt
2025-12-14T11:16:54,849   reading manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-14T11:16:54,853   adding license file 'LICENSE.txt'
2025-12-14T11:16:54,857   writing manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-14T11:16:54,863   copying src/phylogenie/py.typed -> build/lib/phylogenie
2025-12-14T11:16:54,878   installing to build/bdist.linux-armv7l/wheel
2025-12-14T11:16:54,878   running install
2025-12-14T11:16:54,902   running install_lib
2025-12-14T11:16:54,909   creating build/bdist.linux-armv7l/wheel
2025-12-14T11:16:54,911   creating build/bdist.linux-armv7l/wheel/phylogenie
2025-12-14T11:16:54,913   creating build/bdist.linux-armv7l/wheel/phylogenie/skyline
2025-12-14T11:16:54,914   copying build/lib/phylogenie/skyline/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-14T11:16:54,916   copying build/lib/phylogenie/skyline/matrix.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-14T11:16:54,918   copying build/lib/phylogenie/skyline/vector.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-14T11:16:54,921   copying build/lib/phylogenie/skyline/parameter.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-14T11:16:54,923   copying build/lib/phylogenie/mixins.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,925   copying build/lib/phylogenie/typings.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,927   copying build/lib/phylogenie/msa.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,929   copying build/lib/phylogenie/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,932   creating build/bdist.linux-armv7l/wheel/phylogenie/io
2025-12-14T11:16:54,933   copying build/lib/phylogenie/io/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/io
2025-12-14T11:16:54,935   copying build/lib/phylogenie/io/fasta.py -> build/bdist.linux-armv7l/wheel/./phylogenie/io
2025-12-14T11:16:54,937   copying build/lib/phylogenie/main.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,939   copying build/lib/phylogenie/py.typed -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,940   copying build/lib/phylogenie/draw.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,942   copying build/lib/phylogenie/typeguards.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-14T11:16:54,945   creating build/bdist.linux-armv7l/wheel/phylogenie/treesimulator
2025-12-14T11:16:54,946   copying build/lib/phylogenie/treesimulator/utils.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-14T11:16:54,948   copying build/lib/phylogenie/treesimulator/model.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-14T11:16:54,951   creating build/bdist.linux-armv7l/wheel/phylogenie/treesimulator/events
2025-12-14T11:16:54,952   copying build/lib/phylogenie/treesimulator/events/core.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-14T11:16:54,954   copying build/lib/phylogenie/treesimulator/events/mutations.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-14T11:16:54,956   copying build/lib/phylogenie/treesimulator/events/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-14T11:16:54,958   copying build/lib/phylogenie/treesimulator/events/base.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-14T11:16:54,960   copying build/lib/phylogenie/treesimulator/events/contact_tracing.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-14T11:16:54,962   copying build/lib/phylogenie/treesimulator/tree.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-14T11:16:54,965   copying build/lib/phylogenie/treesimulator/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-14T11:16:54,968   creating build/bdist.linux-armv7l/wheel/phylogenie/treesimulator/io
2025-12-14T11:16:54,969   copying build/lib/phylogenie/treesimulator/io/nexus.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/io
2025-12-14T11:16:54,971   copying build/lib/phylogenie/treesimulator/io/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/io
2025-12-14T11:16:54,974   copying build/lib/phylogenie/treesimulator/io/newick.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/io
2025-12-14T11:16:54,976   copying build/lib/phylogenie/treesimulator/gillespie.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-14T11:16:54,979   copying build/lib/phylogenie/treesimulator/features.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-14T11:16:54,982   creating build/bdist.linux-armv7l/wheel/phylogenie/generators
2025-12-14T11:16:54,983   copying build/lib/phylogenie/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-14T11:16:54,985   copying build/lib/phylogenie/generators/configs.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-14T11:16:54,987   copying build/lib/phylogenie/generators/typeguards.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-14T11:16:54,989   copying build/lib/phylogenie/generators/trees.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-14T11:16:54,991   copying build/lib/phylogenie/generators/factories.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-14T11:16:54,994   copying build/lib/phylogenie/generators/dataset.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-14T11:16:54,996   copying build/lib/phylogenie/generators/alisim.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-14T11:16:54,997   running install_egg_info
2025-12-14T11:16:55,003   Copying src/phylogenie.egg-info to build/bdist.linux-armv7l/wheel/./phylogenie-3.1.5-py3.11.egg-info
2025-12-14T11:16:55,017   running install_scripts
2025-12-14T11:16:55,029   creating build/bdist.linux-armv7l/wheel/phylogenie-3.1.5.dist-info/WHEEL
2025-12-14T11:16:55,032   creating '/tmp/pip-wheel-f1ty4e8a/.tmp-omq8s_in/phylogenie-3.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-12-14T11:16:55,034   adding 'phylogenie/__init__.py'
2025-12-14T11:16:55,036   adding 'phylogenie/draw.py'
2025-12-14T11:16:55,037   adding 'phylogenie/main.py'
2025-12-14T11:16:55,038   adding 'phylogenie/mixins.py'
2025-12-14T11:16:55,040   adding 'phylogenie/msa.py'
2025-12-14T11:16:55,041   adding 'phylogenie/py.typed'
2025-12-14T11:16:55,042   adding 'phylogenie/typeguards.py'
2025-12-14T11:16:55,043   adding 'phylogenie/typings.py'
2025-12-14T11:16:55,045   adding 'phylogenie/generators/__init__.py'
2025-12-14T11:16:55,046   adding 'phylogenie/generators/alisim.py'
2025-12-14T11:16:55,047   adding 'phylogenie/generators/configs.py'
2025-12-14T11:16:55,049   adding 'phylogenie/generators/dataset.py'
2025-12-14T11:16:55,050   adding 'phylogenie/generators/factories.py'
2025-12-14T11:16:55,052   adding 'phylogenie/generators/trees.py'
2025-12-14T11:16:55,053   adding 'phylogenie/generators/typeguards.py'
2025-12-14T11:16:55,055   adding 'phylogenie/io/__init__.py'
2025-12-14T11:16:55,056   adding 'phylogenie/io/fasta.py'
2025-12-14T11:16:55,058   adding 'phylogenie/skyline/__init__.py'
2025-12-14T11:16:55,060   adding 'phylogenie/skyline/matrix.py'
2025-12-14T11:16:55,061   adding 'phylogenie/skyline/parameter.py'
2025-12-14T11:16:55,063   adding 'phylogenie/skyline/vector.py'
2025-12-14T11:16:55,064   adding 'phylogenie/treesimulator/__init__.py'
2025-12-14T11:16:55,066   adding 'phylogenie/treesimulator/features.py'
2025-12-14T11:16:55,067   adding 'phylogenie/treesimulator/gillespie.py'
2025-12-14T11:16:55,069   adding 'phylogenie/treesimulator/model.py'
2025-12-14T11:16:55,070   adding 'phylogenie/treesimulator/tree.py'
2025-12-14T11:16:55,071   adding 'phylogenie/treesimulator/utils.py'
2025-12-14T11:16:55,073   adding 'phylogenie/treesimulator/events/__init__.py'
2025-12-14T11:16:55,075   adding 'phylogenie/treesimulator/events/base.py'
2025-12-14T11:16:55,076   adding 'phylogenie/treesimulator/events/contact_tracing.py'
2025-12-14T11:16:55,078   adding 'phylogenie/treesimulator/events/core.py'
2025-12-14T11:16:55,079   adding 'phylogenie/treesimulator/events/mutations.py'
2025-12-14T11:16:55,082   adding 'phylogenie/treesimulator/io/__init__.py'
2025-12-14T11:16:55,083   adding 'phylogenie/treesimulator/io/newick.py'
2025-12-14T11:16:55,084   adding 'phylogenie/treesimulator/io/nexus.py'
2025-12-14T11:16:55,087   adding 'phylogenie-3.1.5.dist-info/licenses/LICENSE.txt'
2025-12-14T11:16:55,089   adding 'phylogenie-3.1.5.dist-info/METADATA'
2025-12-14T11:16:55,090   adding 'phylogenie-3.1.5.dist-info/WHEEL'
2025-12-14T11:16:55,091   adding 'phylogenie-3.1.5.dist-info/entry_points.txt'
2025-12-14T11:16:55,092   adding 'phylogenie-3.1.5.dist-info/top_level.txt'
2025-12-14T11:16:55,093   adding 'phylogenie-3.1.5.dist-info/RECORD'
2025-12-14T11:16:55,095   removing build/bdist.linux-armv7l/wheel
2025-12-14T11:16:55,206   Building wheel for phylogenie (pyproject.toml): finished with status 'done'
2025-12-14T11:16:55,211   Created wheel for phylogenie: filename=phylogenie-3.1.5-py3-none-any.whl size=40673 sha256=d331413619d1d674f83804c00332d7014328634c39aeea403793db6edc64ee5f
2025-12-14T11:16:55,212   Stored in directory: /tmp/pip-ephem-wheel-cache-3jjr3x6p/wheels/19/b2/95/c9f8660c7289ee8e424db3f8fe50a85db0f3dbc8413f98ae28
2025-12-14T11:16:55,223 Successfully built phylogenie
2025-12-14T11:16:55,227 Removed build tracker: '/tmp/pip-build-tracker-ku09w4zs'