2025-12-15T14:00:23,382 Created temporary directory: /tmp/pip-ephem-wheel-cache-yx7o3j3j 2025-12-15T14:00:23,384 Created temporary directory: /tmp/pip-build-tracker-503d0cmz 2025-12-15T14:00:23,385 Initialized build tracking at /tmp/pip-build-tracker-503d0cmz 2025-12-15T14:00:23,385 Created build tracker: /tmp/pip-build-tracker-503d0cmz 2025-12-15T14:00:23,386 Entered build tracker: /tmp/pip-build-tracker-503d0cmz 2025-12-15T14:00:23,387 Created temporary directory: /tmp/pip-wheel-3twcsa00 2025-12-15T14:00:23,390 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-15T14:00:23,392 Created temporary directory: /tmp/pip-ephem-wheel-cache-ckg5e36e 2025-12-15T14:00:23,416 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-15T14:00:23,419 2 location(s) to search for versions of pytom-match-pick: 2025-12-15T14:00:23,419 * https://pypi.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,419 * https://www.piwheels.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,420 Fetching project page and analyzing links: https://pypi.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,421 Getting page https://pypi.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,422 Found index url https://pypi.org/simple 2025-12-15T14:00:23,638 Fetched page https://pypi.org/simple/pytom-match-pick/ as application/vnd.pypi.simple.v1+json 2025-12-15T14:00:23,646 Found link https://files.pythonhosted.org/packages/0b/50/a6e8fdbb4f4be7d7279346ce8fb6bf21d49cff13ea2d715e11b3d24def87/pytom-match-pick-0.4.3.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.4.3 2025-12-15T14:00:23,647 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/d6/23/65b9b159bb7ce397543c9a6c83cf588b155c1cd5118358a83a0dddbd9e3a/pytom_match_pick-0.4.3-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,648 Found link https://files.pythonhosted.org/packages/a9/98/b37b5169d6578a229cad35fd4a5ee9d7d7cfca67c0b0ad051f6e0679b325/pytom-match-pick-0.5.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.5.0 2025-12-15T14:00:23,649 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/77/6b/be3e904b90ef18f7d278bf93f342204825ebf626297fff0120b90c285def/pytom_match_pick-0.5.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,650 Found link https://files.pythonhosted.org/packages/27/c2/bf63df003e0bc960ae914788abdbfdc50b7f801dbe0bebb1236e0fd2a71c/pytom-match-pick-0.6.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.6.0 2025-12-15T14:00:23,651 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/cd/a4/9d13299f41e923277c5261898b88f793393f75e512d58509fc185a824828/pytom_match_pick-0.6.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,651 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/b3/14/7cf120f1678587bde0a854121312a9d4ca1eec5def50edff56eefeff2d42/pytom_match_pick-0.7.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,652 Found link https://files.pythonhosted.org/packages/0d/13/75f2a190e7434d5cc1b193139ed4e818a81d7a68b1388da188b248e0aa58/pytom_match_pick-0.7.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.7.0 2025-12-15T14:00:23,653 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/47/41/02ad9fdfbf3dfeb1530031e448fba60b28c13f15aa5663a138c138f8bac2/pytom_match_pick-0.7.1-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,654 Found link https://files.pythonhosted.org/packages/0d/a4/250695551905248a2ce2bf7a76cd69bfbe2ed80fee05e62ab13b5de941bd/pytom_match_pick-0.7.1.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.7.1 2025-12-15T14:00:23,655 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/bb/de/51e9eb2d055f6b70a6ea099a59cfa586f6d17de28674f78d949e1fd4225e/pytom_match_pick-0.7.2-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,655 Found link https://files.pythonhosted.org/packages/36/9c/9f0a11730f0229e5020ae05ee38e8be530f7deae3e09958e742c3d4b130b/pytom_match_pick-0.7.2.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.9), version: 0.7.2 2025-12-15T14:00:23,656 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/8e/e6/cfca08f6da41747f052f5ed80ef9251d8819a40c16607c59b408c39308aa/pytom_match_pick-0.7.8-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,657 Found link https://files.pythonhosted.org/packages/dc/22/f37ede1560078567bab299973ffdb47dca195964f00bf51d738171580f90/pytom_match_pick-0.7.8.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.8 2025-12-15T14:00:23,658 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/7d/2c/ba4cf9c7d54dfa35619f9e69502ac6254cbd222089e0ca2168327ef5a0bd/pytom_match_pick-0.7.9-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,659 Found link https://files.pythonhosted.org/packages/c4/be/0c5d387b4a3abf34944d46e033e4e989e7dc337570738822d3520ff21379/pytom_match_pick-0.7.9.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.9 2025-12-15T14:00:23,659 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/93/1b/b42104dde349464c6e9fa413a3694aff98e957d782184d75c3eeb2f0a66f/pytom_match_pick-0.7.10-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,660 Found link https://files.pythonhosted.org/packages/29/65/a35d7764ed9f9605592005751dd1c7749f815f3f009c71c59eaac9a5f409/pytom_match_pick-0.7.10.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.10 2025-12-15T14:00:23,661 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/69/22/3c32fb46f689ee65dc64fc1eb9f39d14b28785224236ff758857a9ef1806/pytom_match_pick-0.7.11-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,662 Found link https://files.pythonhosted.org/packages/2e/f2/b23ed374e4256b1cabad9a5914bf5e4fdca8d0a3a7431867cda12b897621/pytom_match_pick-0.7.11.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.7.11 2025-12-15T14:00:23,663 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/7e/d5/adec8d12669829ef37648569d5f6997a2ea3ab1ff3e525bf7fe83b291cee/pytom_match_pick-0.8.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,663 Found link https://files.pythonhosted.org/packages/1e/b4/47edffa0d3c98612b5090be821c4a672a9e217ac47318615941301329965/pytom_match_pick-0.8.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.8.0 2025-12-15T14:00:23,664 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/95/f9/1cd133200aec75733b9091373ffa0570f42637dcf477fd545cc0848d8371/pytom_match_pick-0.9.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,665 Found link https://files.pythonhosted.org/packages/36/eb/10652a1e5c9d66922231978831c351bf21a0f815c0a4798fc41b48b970a1/pytom_match_pick-0.9.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.10), version: 0.9.0 2025-12-15T14:00:23,666 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/ef/7d/f5eb0e6da88b7a73bea9e410cb8c798cfab7272a586f3c83fe6c661b9b2d/pytom_match_pick-0.10.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,667 Found link https://files.pythonhosted.org/packages/7a/21/ffe14c7369dcb3e4b6a3528d87a7db848184e7847ade39f04b0e318b5c45/pytom_match_pick-0.10.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.10.0 2025-12-15T14:00:23,667 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/06/60/6b7173e6087bd5ba2e96e1b0d33fef499e15393c7c386d4324af8a51b6a9/pytom_match_pick-0.11.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,668 Found link https://files.pythonhosted.org/packages/9a/b1/c2fec81e88d8f1b71b25e4b0a099bee6ddf369de023eb5bec375857d872d/pytom_match_pick-0.11.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.11.0 2025-12-15T14:00:23,669 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/0d/f7/11c1363049661abcd70765e29eb667e54f027271dd2e4cb1d289cb1d60a4/pytom_match_pick-0.11.1-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,670 Found link https://files.pythonhosted.org/packages/80/db/6d062fb6fb8652bd11d22fda1d5d2f98deb2a0b66eb65ae9abf4d1678164/pytom_match_pick-0.11.1.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.11.1 2025-12-15T14:00:23,670 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/d1/20/8a7a63294877a5cf0711a4098b1ebc712dccccf0ec2a58e74df4f3b8b9a3/pytom_match_pick-0.12.0-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,671 Found link https://files.pythonhosted.org/packages/88/5a/3ace00117d1b748bbd1a01824ed639fc7e139b26123f42f983b9973b8eb3/pytom_match_pick-0.12.0.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.12.0 2025-12-15T14:00:23,672 Skipping link: No binaries permitted for pytom-match-pick: https://files.pythonhosted.org/packages/23/c1/176b09bc87aaa2fa99727d1118d5fb18bda759237a7b468930f4f57132fc/pytom_match_pick-0.12.1-py3-none-any.whl (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,673 Found link https://files.pythonhosted.org/packages/f5/78/70d02cb0b25aa7aca547888bd14aa6aa96ee4165d50070b1195cb055fe41/pytom_match_pick-0.12.1.tar.gz (from https://pypi.org/simple/pytom-match-pick/) (requires-python:>=3.11), version: 0.12.1 2025-12-15T14:00:23,674 Fetching project page and analyzing links: https://www.piwheels.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,674 Getting page https://www.piwheels.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,675 Found index url https://www.piwheels.org/simple 2025-12-15T14:00:23,834 Fetched page https://www.piwheels.org/simple/pytom-match-pick/ as text/html 2025-12-15T14:00:23,840 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.12.0-py3-none-any.whl#sha256=493a8f47e01e5997ece45c04f911aefb36978a88016bd5318000f8f6427b8a35 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,840 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.11.1-py3-none-any.whl#sha256=9ea3ce41a376085ea1395999ed7ea2a93ecabdf5fa1de70b2d0ff9b9a545df3b (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,841 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.11.0-py3-none-any.whl#sha256=69ee84d80e42e7007e4b77f690fecdf9f8367bc21076bba7525160b5f93240e6 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,842 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.10.0-py3-none-any.whl#sha256=f2024a5c58429dc3720fce8c6b77a2fe70b87172a93e37424645189bd4a7b9f4 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.11) 2025-12-15T14:00:23,842 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.9.0-py3-none-any.whl#sha256=d43a4f2de828aa00b8f286422fa98e91f58a3d73963f9b00005496a0b3bdbe61 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,843 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.8.0-py3-none-any.whl#sha256=f5a77bb5f3196d3e9cc4106b2420679870b3c7a9af90981292cb60ac3fdd174b (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,843 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.11-py3-none-any.whl#sha256=fcb7aae2a3c96808d8ee28280ce461c4a775cd7964fb773eaca9b4af86a83143 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,843 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.10-py3-none-any.whl#sha256=1183393d6aed62cde728d37b90414042b27ba82dd790df84f6979e3365e08fe8 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,844 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.9-py3-none-any.whl#sha256=639e02b69aeec2003b13859cca7e0507b6caf80c313d7c42f91b442c3ce4b309 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,844 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.8-py3-none-any.whl#sha256=9a98212565828f7fca31fcd28d027d1fcb33254fee47991168ab354d240e22b6 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.10) 2025-12-15T14:00:23,845 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.2-py3-none-any.whl#sha256=3db888a58c6dd08f07f4c785bd0f06910b7dfd23843b96a96e90a53597fe9b81 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,846 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.1-py3-none-any.whl#sha256=2d8c4573029bbf0c16a1bb6d747c8131ac8e8c2f6f87ae7c94ff5f5271a43a16 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,846 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.7.0-py3-none-any.whl#sha256=a252bdbc4e0df9a4417b30e3a0f8a1d894feb7ce0f106717dd019fbfff9eed43 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,847 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.6.0-py3-none-any.whl#sha256=e37348bec06b4b7a2f06b2904dba5cfc3485a84dfbfb73a61ab9c49dbe60aa08 (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,847 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.5.0-py3-none-any.whl#sha256=929ad4bcee62521a0e83bc99688468940d4a6fcf362c71a9c8d14320e0f1ba0c (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,848 Skipping link: No binaries permitted for pytom-match-pick: https://archive1.piwheels.org/simple/pytom-match-pick/pytom_match_pick-0.4.3-py3-none-any.whl#sha256=69aeea6091ab5fb0f7e1a58bfe86631c6c71e95d296b7e55b12701cc1fd02e7a (from https://www.piwheels.org/simple/pytom-match-pick/) (requires-python:>=3.9) 2025-12-15T14:00:23,849 Skipping link: not a file: https://www.piwheels.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,849 Skipping link: not a file: https://pypi.org/simple/pytom-match-pick/ 2025-12-15T14:00:23,870 Given no hashes to check 1 links for project 'pytom-match-pick': discarding no candidates 2025-12-15T14:00:23,887 Collecting pytom-match-pick==0.12.1 2025-12-15T14:00:23,890 Created temporary directory: /tmp/pip-unpack-cebnn101 2025-12-15T14:00:24,102 Downloading pytom_match_pick-0.12.1.tar.gz (101 kB) 2025-12-15T14:00:24,263 Added pytom-match-pick==0.12.1 from https://files.pythonhosted.org/packages/f5/78/70d02cb0b25aa7aca547888bd14aa6aa96ee4165d50070b1195cb055fe41/pytom_match_pick-0.12.1.tar.gz to build tracker '/tmp/pip-build-tracker-503d0cmz' 2025-12-15T14:00:24,268 Created temporary directory: /tmp/pip-build-env-gfy6gsfs 2025-12-15T14:00:24,272 Installing build dependencies: started 2025-12-15T14:00:24,273 Running command pip subprocess to install build dependencies 2025-12-15T14:00:25,390 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-15T14:00:26,006 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-15T14:00:26,029 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-15T14:00:27,736 Collecting setuptools 2025-12-15T14:00:27,840 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-15T14:00:30,769 Installing collected packages: setuptools 2025-12-15T14:00:34,418 Successfully installed setuptools-80.9.0 2025-12-15T14:00:34,681 Installing build dependencies: finished with status 'done' 2025-12-15T14:00:34,688 Getting requirements to build wheel: started 2025-12-15T14:00:34,689 Running command Getting requirements to build wheel 2025-12-15T14:00:35,275 `pytom_tm.entry_points:estimate_roc [plotting]` - using extras for entry points is not recommended 2025-12-15T14:00:35,280 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-15T14:00:35,281 !! 2025-12-15T14:00:35,282 ******************************************************************************** 2025-12-15T14:00:35,283 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-15T14:00:35,284 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-15T14:00:35,284 or your builds will no longer be supported. 2025-12-15T14:00:35,285 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:35,286 ******************************************************************************** 2025-12-15T14:00:35,287 !! 2025-12-15T14:00:35,287 corresp(dist, value, root_dir) 2025-12-15T14:00:35,369 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-15T14:00:35,369 !! 2025-12-15T14:00:35,370 ******************************************************************************** 2025-12-15T14:00:35,371 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-15T14:00:35,371 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2025-12-15T14:00:35,372 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:35,373 ******************************************************************************** 2025-12-15T14:00:35,374 !! 2025-12-15T14:00:35,374 dist._finalize_license_expression() 2025-12-15T14:00:35,375 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-15T14:00:35,375 !! 2025-12-15T14:00:35,376 ******************************************************************************** 2025-12-15T14:00:35,376 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-15T14:00:35,377 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2025-12-15T14:00:35,378 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:35,379 ******************************************************************************** 2025-12-15T14:00:35,380 !! 2025-12-15T14:00:35,380 self._finalize_license_expression() 2025-12-15T14:00:35,381 running egg_info 2025-12-15T14:00:35,388 writing src/pytom_match_pick.egg-info/PKG-INFO 2025-12-15T14:00:35,396 writing dependency_links to src/pytom_match_pick.egg-info/dependency_links.txt 2025-12-15T14:00:35,398 writing entry points to src/pytom_match_pick.egg-info/entry_points.txt 2025-12-15T14:00:35,401 writing requirements to src/pytom_match_pick.egg-info/requires.txt 2025-12-15T14:00:35,402 writing top-level names to src/pytom_match_pick.egg-info/top_level.txt 2025-12-15T14:00:35,425 reading manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2025-12-15T14:00:35,428 reading manifest template 'MANIFEST.in' 2025-12-15T14:00:35,430 adding license file 'LICENSE' 2025-12-15T14:00:35,434 writing manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2025-12-15T14:00:35,530 Getting requirements to build wheel: finished with status 'done' 2025-12-15T14:00:35,533 Created temporary directory: /tmp/pip-modern-metadata-ma40l11z 2025-12-15T14:00:35,535 Preparing metadata (pyproject.toml): started 2025-12-15T14:00:35,537 Running command Preparing metadata (pyproject.toml) 2025-12-15T14:00:36,090 `pytom_tm.entry_points:estimate_roc [plotting]` - using extras for entry points is not recommended 2025-12-15T14:00:36,096 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-15T14:00:36,097 !! 2025-12-15T14:00:36,098 ******************************************************************************** 2025-12-15T14:00:36,099 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-15T14:00:36,100 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-15T14:00:36,101 or your builds will no longer be supported. 2025-12-15T14:00:36,102 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:36,103 ******************************************************************************** 2025-12-15T14:00:36,104 !! 2025-12-15T14:00:36,105 corresp(dist, value, root_dir) 2025-12-15T14:00:36,182 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-15T14:00:36,183 !! 2025-12-15T14:00:36,184 ******************************************************************************** 2025-12-15T14:00:36,184 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-15T14:00:36,185 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2025-12-15T14:00:36,186 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:36,186 ******************************************************************************** 2025-12-15T14:00:36,187 !! 2025-12-15T14:00:36,188 dist._finalize_license_expression() 2025-12-15T14:00:36,188 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-15T14:00:36,189 !! 2025-12-15T14:00:36,190 ******************************************************************************** 2025-12-15T14:00:36,190 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-15T14:00:36,191 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2025-12-15T14:00:36,192 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:36,192 ******************************************************************************** 2025-12-15T14:00:36,194 !! 2025-12-15T14:00:36,194 self._finalize_license_expression() 2025-12-15T14:00:36,196 running dist_info 2025-12-15T14:00:36,208 creating /tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info 2025-12-15T14:00:36,209 writing /tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/PKG-INFO 2025-12-15T14:00:36,216 writing dependency_links to /tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/dependency_links.txt 2025-12-15T14:00:36,218 writing entry points to /tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/entry_points.txt 2025-12-15T14:00:36,222 writing requirements to /tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/requires.txt 2025-12-15T14:00:36,223 writing top-level names to /tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/top_level.txt 2025-12-15T14:00:36,224 writing manifest file '/tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/SOURCES.txt' 2025-12-15T14:00:36,244 reading manifest file '/tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/SOURCES.txt' 2025-12-15T14:00:36,246 reading manifest template 'MANIFEST.in' 2025-12-15T14:00:36,247 adding license file 'LICENSE' 2025-12-15T14:00:36,251 writing manifest file '/tmp/pip-modern-metadata-ma40l11z/pytom_match_pick.egg-info/SOURCES.txt' 2025-12-15T14:00:36,252 creating '/tmp/pip-modern-metadata-ma40l11z/pytom_match_pick-0.12.1.dist-info' 2025-12-15T14:00:36,376 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-15T14:00:36,385 Source in /tmp/pip-wheel-3twcsa00/pytom-match-pick_296fa0f2edde4e1f92b255389bbcba0a has version 0.12.1, which satisfies requirement pytom-match-pick==0.12.1 from https://files.pythonhosted.org/packages/f5/78/70d02cb0b25aa7aca547888bd14aa6aa96ee4165d50070b1195cb055fe41/pytom_match_pick-0.12.1.tar.gz 2025-12-15T14:00:36,386 Removed pytom-match-pick==0.12.1 from https://files.pythonhosted.org/packages/f5/78/70d02cb0b25aa7aca547888bd14aa6aa96ee4165d50070b1195cb055fe41/pytom_match_pick-0.12.1.tar.gz from build tracker '/tmp/pip-build-tracker-503d0cmz' 2025-12-15T14:00:36,399 Created temporary directory: /tmp/pip-unpack-5odmuah6 2025-12-15T14:00:36,400 Building wheels for collected packages: pytom-match-pick 2025-12-15T14:00:36,404 Created temporary directory: /tmp/pip-wheel-zl9sxygx 2025-12-15T14:00:36,405 Destination directory: /tmp/pip-wheel-zl9sxygx 2025-12-15T14:00:36,407 Building wheel for pytom-match-pick (pyproject.toml): started 2025-12-15T14:00:36,408 Running command Building wheel for pytom-match-pick (pyproject.toml) 2025-12-15T14:00:36,956 `pytom_tm.entry_points:estimate_roc [plotting]` - using extras for entry points is not recommended 2025-12-15T14:00:36,963 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-15T14:00:36,963 !! 2025-12-15T14:00:36,964 ******************************************************************************** 2025-12-15T14:00:36,965 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-15T14:00:36,966 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-15T14:00:36,966 or your builds will no longer be supported. 2025-12-15T14:00:36,967 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:36,968 ******************************************************************************** 2025-12-15T14:00:36,969 !! 2025-12-15T14:00:36,969 corresp(dist, value, root_dir) 2025-12-15T14:00:37,043 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-15T14:00:37,044 !! 2025-12-15T14:00:37,045 ******************************************************************************** 2025-12-15T14:00:37,046 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-15T14:00:37,047 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2025-12-15T14:00:37,048 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:37,048 ******************************************************************************** 2025-12-15T14:00:37,049 !! 2025-12-15T14:00:37,050 dist._finalize_license_expression() 2025-12-15T14:00:37,050 /tmp/pip-build-env-gfy6gsfs/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-15T14:00:37,051 !! 2025-12-15T14:00:37,052 ******************************************************************************** 2025-12-15T14:00:37,053 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-15T14:00:37,054 License :: OSI Approved :: GNU General Public License v2 (GPLv2) 2025-12-15T14:00:37,055 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-15T14:00:37,056 ******************************************************************************** 2025-12-15T14:00:37,057 !! 2025-12-15T14:00:37,057 self._finalize_license_expression() 2025-12-15T14:00:37,058 running bdist_wheel 2025-12-15T14:00:37,074 running build 2025-12-15T14:00:37,074 running build_py 2025-12-15T14:00:37,081 creating build/lib/pytom_tm 2025-12-15T14:00:37,084 copying src/pytom_tm/merge_stars.py -> build/lib/pytom_tm 2025-12-15T14:00:37,086 copying src/pytom_tm/angles.py -> build/lib/pytom_tm 2025-12-15T14:00:37,089 copying src/pytom_tm/tmjob.py -> build/lib/pytom_tm 2025-12-15T14:00:37,092 copying src/pytom_tm/parallel.py -> build/lib/pytom_tm 2025-12-15T14:00:37,095 copying src/pytom_tm/utils.py -> build/lib/pytom_tm 2025-12-15T14:00:37,097 copying src/pytom_tm/mask.py -> build/lib/pytom_tm 2025-12-15T14:00:37,099 copying src/pytom_tm/entry_points.py -> build/lib/pytom_tm 2025-12-15T14:00:37,102 copying src/pytom_tm/dataclass.py -> build/lib/pytom_tm 2025-12-15T14:00:37,105 copying src/pytom_tm/plotting.py -> build/lib/pytom_tm 2025-12-15T14:00:37,107 copying src/pytom_tm/io.py -> build/lib/pytom_tm 2025-12-15T14:00:37,110 copying src/pytom_tm/json.py -> build/lib/pytom_tm 2025-12-15T14:00:37,112 copying src/pytom_tm/__init__.py -> build/lib/pytom_tm 2025-12-15T14:00:37,114 copying src/pytom_tm/matching.py -> build/lib/pytom_tm 2025-12-15T14:00:37,117 copying src/pytom_tm/extract.py -> build/lib/pytom_tm 2025-12-15T14:00:37,120 copying src/pytom_tm/weights.py -> build/lib/pytom_tm 2025-12-15T14:00:37,123 copying src/pytom_tm/template.py -> build/lib/pytom_tm 2025-12-15T14:00:37,125 copying src/pytom_tm/correlation.py -> build/lib/pytom_tm 2025-12-15T14:00:37,127 running egg_info 2025-12-15T14:00:37,139 writing src/pytom_match_pick.egg-info/PKG-INFO 2025-12-15T14:00:37,147 writing dependency_links to src/pytom_match_pick.egg-info/dependency_links.txt 2025-12-15T14:00:37,149 writing entry points to src/pytom_match_pick.egg-info/entry_points.txt 2025-12-15T14:00:37,152 writing requirements to src/pytom_match_pick.egg-info/requires.txt 2025-12-15T14:00:37,153 writing top-level names to src/pytom_match_pick.egg-info/top_level.txt 2025-12-15T14:00:37,164 reading manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2025-12-15T14:00:37,168 reading manifest template 'MANIFEST.in' 2025-12-15T14:00:37,169 adding license file 'LICENSE' 2025-12-15T14:00:37,173 writing manifest file 'src/pytom_match_pick.egg-info/SOURCES.txt' 2025-12-15T14:00:37,186 installing to build/bdist.linux-armv7l/wheel 2025-12-15T14:00:37,187 running install 2025-12-15T14:00:37,210 running install_lib 2025-12-15T14:00:37,217 creating build/bdist.linux-armv7l/wheel 2025-12-15T14:00:37,219 creating build/bdist.linux-armv7l/wheel/pytom_tm 2025-12-15T14:00:37,220 copying build/lib/pytom_tm/merge_stars.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,223 copying build/lib/pytom_tm/angles.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,226 copying build/lib/pytom_tm/tmjob.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,229 copying build/lib/pytom_tm/parallel.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,232 copying build/lib/pytom_tm/utils.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,233 copying build/lib/pytom_tm/mask.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,236 copying build/lib/pytom_tm/entry_points.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,239 copying build/lib/pytom_tm/dataclass.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,241 copying build/lib/pytom_tm/plotting.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,244 copying build/lib/pytom_tm/io.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,247 copying build/lib/pytom_tm/json.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,249 copying build/lib/pytom_tm/__init__.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,251 copying build/lib/pytom_tm/matching.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,254 copying build/lib/pytom_tm/extract.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,257 copying build/lib/pytom_tm/weights.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,260 copying build/lib/pytom_tm/template.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,262 copying build/lib/pytom_tm/correlation.py -> build/bdist.linux-armv7l/wheel/./pytom_tm 2025-12-15T14:00:37,264 running install_egg_info 2025-12-15T14:00:37,270 Copying src/pytom_match_pick.egg-info to build/bdist.linux-armv7l/wheel/./pytom_match_pick-0.12.1-py3.11.egg-info 2025-12-15T14:00:37,284 running install_scripts 2025-12-15T14:00:37,298 creating build/bdist.linux-armv7l/wheel/pytom_match_pick-0.12.1.dist-info/WHEEL 2025-12-15T14:00:37,301 creating '/tmp/pip-wheel-zl9sxygx/.tmp-sfqo8nmc/pytom_match_pick-0.12.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-15T14:00:37,307 adding 'pytom_match_pick-0.12.1.dist-info/licenses/LICENSE' 2025-12-15T14:00:37,309 adding 'pytom_tm/__init__.py' 2025-12-15T14:00:37,311 adding 'pytom_tm/angles.py' 2025-12-15T14:00:37,313 adding 'pytom_tm/correlation.py' 2025-12-15T14:00:37,314 adding 'pytom_tm/dataclass.py' 2025-12-15T14:00:37,319 adding 'pytom_tm/entry_points.py' 2025-12-15T14:00:37,322 adding 'pytom_tm/extract.py' 2025-12-15T14:00:37,325 adding 'pytom_tm/io.py' 2025-12-15T14:00:37,326 adding 'pytom_tm/json.py' 2025-12-15T14:00:37,328 adding 'pytom_tm/mask.py' 2025-12-15T14:00:37,330 adding 'pytom_tm/matching.py' 2025-12-15T14:00:37,332 adding 'pytom_tm/merge_stars.py' 2025-12-15T14:00:37,333 adding 'pytom_tm/parallel.py' 2025-12-15T14:00:37,336 adding 'pytom_tm/plotting.py' 2025-12-15T14:00:37,337 adding 'pytom_tm/template.py' 2025-12-15T14:00:37,342 adding 'pytom_tm/tmjob.py' 2025-12-15T14:00:37,344 adding 'pytom_tm/utils.py' 2025-12-15T14:00:37,347 adding 'pytom_tm/weights.py' 2025-12-15T14:00:37,351 adding 'pytom_match_pick-0.12.1.dist-info/METADATA' 2025-12-15T14:00:37,353 adding 'pytom_match_pick-0.12.1.dist-info/WHEEL' 2025-12-15T14:00:37,354 adding 'pytom_match_pick-0.12.1.dist-info/entry_points.txt' 2025-12-15T14:00:37,355 adding 'pytom_match_pick-0.12.1.dist-info/top_level.txt' 2025-12-15T14:00:37,356 adding 'pytom_match_pick-0.12.1.dist-info/RECORD' 2025-12-15T14:00:37,358 removing build/bdist.linux-armv7l/wheel 2025-12-15T14:00:37,462 Building wheel for pytom-match-pick (pyproject.toml): finished with status 'done' 2025-12-15T14:00:37,469 Created wheel for pytom-match-pick: filename=pytom_match_pick-0.12.1-py3-none-any.whl size=79339 sha256=8e8a0066378ebf6fd114c5aa826ee1fb89bda3c7993e590d15b024684735ab8c 2025-12-15T14:00:37,470 Stored in directory: /tmp/pip-ephem-wheel-cache-ckg5e36e/wheels/04/2a/a0/decb22b84f28e1d3e3ecd69667941aaaf6ddb18437cb3c46ca 2025-12-15T14:00:37,494 Successfully built pytom-match-pick 2025-12-15T14:00:37,499 Removed build tracker: '/tmp/pip-build-tracker-503d0cmz'