2025-12-17T14:18:54,317 Created temporary directory: /tmp/pip-ephem-wheel-cache-wpkzj1i1 2025-12-17T14:18:54,319 Created temporary directory: /tmp/pip-build-tracker-458_ugpk 2025-12-17T14:18:54,320 Initialized build tracking at /tmp/pip-build-tracker-458_ugpk 2025-12-17T14:18:54,320 Created build tracker: /tmp/pip-build-tracker-458_ugpk 2025-12-17T14:18:54,321 Entered build tracker: /tmp/pip-build-tracker-458_ugpk 2025-12-17T14:18:54,322 Created temporary directory: /tmp/pip-wheel-0km0j76g 2025-12-17T14:18:54,324 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-17T14:18:54,327 Created temporary directory: /tmp/pip-ephem-wheel-cache-kcy5of4o 2025-12-17T14:18:54,352 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-17T14:18:54,355 2 location(s) to search for versions of galaxy-data: 2025-12-17T14:18:54,355 * https://pypi.org/simple/galaxy-data/ 2025-12-17T14:18:54,355 * https://www.piwheels.org/simple/galaxy-data/ 2025-12-17T14:18:54,356 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-data/ 2025-12-17T14:18:54,357 Getting page https://pypi.org/simple/galaxy-data/ 2025-12-17T14:18:54,358 Found index url https://pypi.org/simple 2025-12-17T14:18:54,569 Fetched page https://pypi.org/simple/galaxy-data/ as application/vnd.pypi.simple.v1+json 2025-12-17T14:18:54,585 Found link https://files.pythonhosted.org/packages/1f/fa/d8f43cf473dabba250bd9d5fed96b1a5acc89517739bc26b91489f61fa57/galaxy-data-19.9.0.dev0.tar.gz 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https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.9.1-py2.py3-none-any.whl#sha256=6a456ec927643665dae5c649a6a18460d79474bd5e1277274ea2174e952f94c2 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-17T14:18:54,839 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.9.0-py2.py3-none-any.whl#sha256=ec937bfcfff347039541431d9724018b14a295ecc49f0831145f8947264a5d3b (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-17T14:18:54,840 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-20.5.0-py2.py3-none-any.whl#sha256=7ee3d488fc5ef68f91d03116383adac3f4db74334062abb069386b01b39d80f4 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-17T14:18:54,840 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev3-py2.py3-none-any.whl#sha256=52651203dfccbfdf8b37326330598785a8c0002d69a461fba17f6a7031bdce85 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-17T14:18:54,841 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev2-py2.py3-none-any.whl#sha256=be58e78b806fa3f85a8a8d45b7f040439a0c95d461003172d2b7b4430002d33f (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-17T14:18:54,842 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev1-py2.py3-none-any.whl#sha256=ef242b3d745ced066c572d137b43095eb7df42074a5e1e8eca76ea52cf065a92 (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-17T14:18:54,842 Skipping link: No binaries permitted for galaxy-data: https://archive1.piwheels.org/simple/galaxy-data/galaxy_data-19.9.0.dev0-py3-none-any.whl#sha256=d4831c48a07316758b909a471cb006e270083f3ceccc3d174f78b44b07a914ff (from https://www.piwheels.org/simple/galaxy-data/) 2025-12-17T14:18:54,843 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-data/ 2025-12-17T14:18:54,843 Skipping link: not a file: https://pypi.org/simple/galaxy-data/ 2025-12-17T14:18:54,867 Given no hashes to check 1 links for project 'galaxy-data': discarding no candidates 2025-12-17T14:18:54,884 Collecting galaxy-data==25.1.0 2025-12-17T14:18:54,887 Created temporary directory: /tmp/pip-unpack-h9oz85lb 2025-12-17T14:18:55,017 Downloading galaxy_data-25.1.0.tar.gz (654 kB) 2025-12-17T14:18:55,899 Added galaxy-data==25.1.0 from https://files.pythonhosted.org/packages/bf/99/7ca9f35b00fa012c32eeb92b7f869f186bb48281ded143080b37c2f11757/galaxy_data-25.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-458_ugpk' 2025-12-17T14:18:55,902 Created temporary directory: /tmp/pip-build-env-nwztgiyp 2025-12-17T14:18:55,907 Installing build dependencies: started 2025-12-17T14:18:55,908 Running command pip subprocess to install build dependencies 2025-12-17T14:18:57,036 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-17T14:18:57,664 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-17T14:18:57,687 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-17T14:18:59,401 Collecting setuptools 2025-12-17T14:18:59,499 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-17T14:19:02,543 Installing collected packages: setuptools 2025-12-17T14:19:06,181 Successfully installed setuptools-80.9.0 2025-12-17T14:19:06,446 Installing build dependencies: finished with status 'done' 2025-12-17T14:19:06,453 Getting requirements to build wheel: started 2025-12-17T14:19:06,454 Running command Getting requirements to build wheel 2025-12-17T14:19:07,037 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T14:19:07,037 !! 2025-12-17T14:19:07,039 ******************************************************************************** 2025-12-17T14:19:07,039 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T14:19:07,040 License :: OSI Approved :: Academic Free License (AFL) 2025-12-17T14:19:07,042 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T14:19:07,042 ******************************************************************************** 2025-12-17T14:19:07,043 !! 2025-12-17T14:19:07,044 self._finalize_license_expression() 2025-12-17T14:19:07,105 running egg_info 2025-12-17T14:19:07,112 writing galaxy_data.egg-info/PKG-INFO 2025-12-17T14:19:07,120 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2025-12-17T14:19:07,122 writing entry points to galaxy_data.egg-info/entry_points.txt 2025-12-17T14:19:07,125 writing requirements to galaxy_data.egg-info/requires.txt 2025-12-17T14:19:07,126 writing top-level names to galaxy_data.egg-info/top_level.txt 2025-12-17T14:19:07,179 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-17T14:19:07,216 reading manifest template 'MANIFEST.in' 2025-12-17T14:19:07,259 adding license file 'LICENSE' 2025-12-17T14:19:07,278 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-17T14:19:07,368 Getting requirements to build wheel: finished with status 'done' 2025-12-17T14:19:07,372 Created temporary directory: /tmp/pip-modern-metadata-3xv3vflw 2025-12-17T14:19:07,374 Preparing metadata (pyproject.toml): started 2025-12-17T14:19:07,375 Running command Preparing metadata (pyproject.toml) 2025-12-17T14:19:07,928 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T14:19:07,929 !! 2025-12-17T14:19:07,930 ******************************************************************************** 2025-12-17T14:19:07,931 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T14:19:07,932 License :: OSI Approved :: Academic Free License (AFL) 2025-12-17T14:19:07,933 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T14:19:07,934 ******************************************************************************** 2025-12-17T14:19:07,935 !! 2025-12-17T14:19:07,935 self._finalize_license_expression() 2025-12-17T14:19:07,955 running dist_info 2025-12-17T14:19:07,968 creating /tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info 2025-12-17T14:19:07,969 writing /tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/PKG-INFO 2025-12-17T14:19:07,977 writing dependency_links to /tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/dependency_links.txt 2025-12-17T14:19:07,979 writing entry points to /tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/entry_points.txt 2025-12-17T14:19:07,981 writing requirements to /tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/requires.txt 2025-12-17T14:19:07,982 writing top-level names to /tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/top_level.txt 2025-12-17T14:19:07,984 writing manifest file '/tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/SOURCES.txt' 2025-12-17T14:19:08,032 reading manifest file '/tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/SOURCES.txt' 2025-12-17T14:19:08,034 reading manifest template 'MANIFEST.in' 2025-12-17T14:19:08,073 adding license file 'LICENSE' 2025-12-17T14:19:08,087 writing manifest file '/tmp/pip-modern-metadata-3xv3vflw/galaxy_data.egg-info/SOURCES.txt' 2025-12-17T14:19:08,089 creating '/tmp/pip-modern-metadata-3xv3vflw/galaxy_data-25.1.0.dist-info' 2025-12-17T14:19:08,231 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-17T14:19:08,242 Source in /tmp/pip-wheel-0km0j76g/galaxy-data_9380d872c8924b7dbacd813cb280e0f5 has version 25.1.0, which satisfies requirement galaxy-data==25.1.0 from https://files.pythonhosted.org/packages/bf/99/7ca9f35b00fa012c32eeb92b7f869f186bb48281ded143080b37c2f11757/galaxy_data-25.1.0.tar.gz 2025-12-17T14:19:08,243 Removed galaxy-data==25.1.0 from https://files.pythonhosted.org/packages/bf/99/7ca9f35b00fa012c32eeb92b7f869f186bb48281ded143080b37c2f11757/galaxy_data-25.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-458_ugpk' 2025-12-17T14:19:08,261 Created temporary directory: /tmp/pip-unpack-vof1dqps 2025-12-17T14:19:08,261 Building wheels for collected packages: galaxy-data 2025-12-17T14:19:08,266 Created temporary directory: /tmp/pip-wheel-eiis3jtb 2025-12-17T14:19:08,267 Destination directory: /tmp/pip-wheel-eiis3jtb 2025-12-17T14:19:08,269 Building wheel for galaxy-data (pyproject.toml): started 2025-12-17T14:19:08,270 Running command Building wheel for galaxy-data (pyproject.toml) 2025-12-17T14:19:08,814 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T14:19:08,814 !! 2025-12-17T14:19:08,815 ******************************************************************************** 2025-12-17T14:19:08,816 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T14:19:08,817 License :: OSI Approved :: Academic Free License (AFL) 2025-12-17T14:19:08,819 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T14:19:08,819 ******************************************************************************** 2025-12-17T14:19:08,820 !! 2025-12-17T14:19:08,821 self._finalize_license_expression() 2025-12-17T14:19:08,844 running bdist_wheel 2025-12-17T14:19:08,874 running build 2025-12-17T14:19:08,874 running build_py 2025-12-17T14:19:08,884 creating build/lib/galaxy 2025-12-17T14:19:08,886 copying galaxy/__init__.py -> build/lib/galaxy 2025-12-17T14:19:08,889 creating build/lib/galaxy/model 2025-12-17T14:19:08,890 copying galaxy/model/base.py -> build/lib/galaxy/model 2025-12-17T14:19:08,893 copying galaxy/model/scoped_session.py -> build/lib/galaxy/model 2025-12-17T14:19:08,895 copying galaxy/model/dereference.py -> build/lib/galaxy/model 2025-12-17T14:19:08,897 copying galaxy/model/deferred.py -> build/lib/galaxy/model 2025-12-17T14:19:08,900 copying galaxy/model/metadata.py -> build/lib/galaxy/model 2025-12-17T14:19:08,903 copying galaxy/model/item_attrs.py -> build/lib/galaxy/model 2025-12-17T14:19:08,905 copying galaxy/model/__init__.py -> build/lib/galaxy/model 2025-12-17T14:19:08,915 copying galaxy/model/index_filter_util.py -> build/lib/galaxy/model 2025-12-17T14:19:08,917 copying galaxy/model/none_like.py -> build/lib/galaxy/model 2025-12-17T14:19:08,919 copying galaxy/model/custom_types.py -> build/lib/galaxy/model 2025-12-17T14:19:08,922 copying galaxy/model/security.py -> build/lib/galaxy/model 2025-12-17T14:19:08,925 copying galaxy/model/database_object_names.py -> build/lib/galaxy/model 2025-12-17T14:19:08,927 copying galaxy/model/mapping.py -> build/lib/galaxy/model 2025-12-17T14:19:08,929 copying galaxy/model/database_heartbeat.py -> build/lib/galaxy/model 2025-12-17T14:19:08,931 copying galaxy/model/tags.py -> build/lib/galaxy/model 2025-12-17T14:19:08,934 copying galaxy/model/database_utils.py -> build/lib/galaxy/model 2025-12-17T14:19:08,938 creating build/lib/galaxy/datatypes 2025-12-17T14:19:08,939 copying galaxy/datatypes/anvio.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,941 copying galaxy/datatypes/larch.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,943 copying galaxy/datatypes/msa.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,946 copying galaxy/datatypes/flow.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,948 copying galaxy/datatypes/text.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,952 copying galaxy/datatypes/goldenpath.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,954 copying galaxy/datatypes/upload_util.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,957 copying galaxy/datatypes/chrominfo.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,959 copying galaxy/datatypes/blast.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,961 copying galaxy/datatypes/sniff.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,964 copying galaxy/datatypes/graph.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,966 copying galaxy/datatypes/checkers.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,968 copying galaxy/datatypes/coverage.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,969 copying galaxy/datatypes/isa.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,972 copying galaxy/datatypes/neo4j.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,974 copying galaxy/datatypes/data.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,978 copying galaxy/datatypes/tracks.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,980 copying galaxy/datatypes/metadata.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,981 copying galaxy/datatypes/gis.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,984 copying galaxy/datatypes/xml.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,986 copying galaxy/datatypes/genetics.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,989 copying galaxy/datatypes/tabular.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,993 copying galaxy/datatypes/registry.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,996 copying galaxy/datatypes/speech.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:08,998 copying galaxy/datatypes/metacyto.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,000 copying galaxy/datatypes/__init__.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,002 copying galaxy/datatypes/qualityscore.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,004 copying galaxy/datatypes/molecules.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,007 copying galaxy/datatypes/qiime2.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,010 copying galaxy/datatypes/microarrays.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,013 copying galaxy/datatypes/mothur.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,016 copying galaxy/datatypes/hdf5.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,018 copying galaxy/datatypes/assembly.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,020 copying galaxy/datatypes/chain.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,022 copying galaxy/datatypes/_schema.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,024 copying galaxy/datatypes/constructive_solid_geometry.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,027 copying galaxy/datatypes/phylip.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,029 copying galaxy/datatypes/media.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,032 copying galaxy/datatypes/triples.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,035 copying galaxy/datatypes/interval.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,038 copying galaxy/datatypes/proteomics.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,041 copying galaxy/datatypes/sequence.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,045 copying galaxy/datatypes/binary.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,051 copying galaxy/datatypes/protocols.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,053 copying galaxy/datatypes/images.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,056 copying galaxy/datatypes/spaln.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,058 copying galaxy/datatypes/ngsindex.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,060 copying galaxy/datatypes/annotation.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,062 copying galaxy/datatypes/plant_tribes.py -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,065 creating build/lib/galaxy/quota 2025-12-17T14:19:09,066 copying galaxy/quota/__init__.py -> build/lib/galaxy/quota 2025-12-17T14:19:09,069 copying galaxy/quota/_schema.py -> build/lib/galaxy/quota 2025-12-17T14:19:09,072 creating build/lib/galaxy/security 2025-12-17T14:19:09,073 copying galaxy/security/passwords.py -> build/lib/galaxy/security 2025-12-17T14:19:09,075 copying galaxy/security/validate_user_input.py -> build/lib/galaxy/security 2025-12-17T14:19:09,077 copying galaxy/security/__init__.py -> build/lib/galaxy/security 2025-12-17T14:19:09,080 copying galaxy/security/ssh_util.py -> build/lib/galaxy/security 2025-12-17T14:19:09,081 copying galaxy/security/object_wrapper.py -> build/lib/galaxy/security 2025-12-17T14:19:09,084 copying galaxy/security/vault.py -> build/lib/galaxy/security 2025-12-17T14:19:09,087 copying galaxy/security/idencoding.py -> build/lib/galaxy/security 2025-12-17T14:19:09,090 creating build/lib/galaxy/model/scripts 2025-12-17T14:19:09,091 copying galaxy/model/scripts/history_table_pruner.py -> build/lib/galaxy/model/scripts 2025-12-17T14:19:09,093 copying galaxy/model/scripts/prune_history_table.py -> build/lib/galaxy/model/scripts 2025-12-17T14:19:09,095 copying galaxy/model/scripts/delete_galaxy_sessions.py -> build/lib/galaxy/model/scripts 2025-12-17T14:19:09,097 copying galaxy/model/scripts/__init__.py -> build/lib/galaxy/model/scripts 2025-12-17T14:19:09,099 copying galaxy/model/scripts/delete_job_metrics.py -> build/lib/galaxy/model/scripts 2025-12-17T14:19:09,102 creating build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,103 copying galaxy/model/dataset_collections/builder.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,106 copying galaxy/model/dataset_collections/workbook_util.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,108 copying galaxy/model/dataset_collections/adapters.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,111 copying galaxy/model/dataset_collections/rule_target_models.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,113 copying galaxy/model/dataset_collections/auto_identifiers.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,115 copying galaxy/model/dataset_collections/rule_target_columns.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,117 copying galaxy/model/dataset_collections/auto_pairing.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,119 copying galaxy/model/dataset_collections/registry.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,121 copying galaxy/model/dataset_collections/query.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,123 copying galaxy/model/dataset_collections/__init__.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,124 copying galaxy/model/dataset_collections/subcollections.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,126 copying galaxy/model/dataset_collections/matching.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,128 copying galaxy/model/dataset_collections/type_description.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,131 copying galaxy/model/dataset_collections/structure.py -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,134 creating build/lib/galaxy/model/tool_shed_install 2025-12-17T14:19:09,134 copying galaxy/model/tool_shed_install/__init__.py -> build/lib/galaxy/model/tool_shed_install 2025-12-17T14:19:09,138 copying galaxy/model/tool_shed_install/mapping.py -> build/lib/galaxy/model/tool_shed_install 2025-12-17T14:19:09,140 creating build/lib/galaxy/model/store 2025-12-17T14:19:09,141 copying galaxy/model/store/build_objects.py -> build/lib/galaxy/model/store 2025-12-17T14:19:09,143 copying galaxy/model/store/load_objects.py -> build/lib/galaxy/model/store 2025-12-17T14:19:09,145 copying galaxy/model/store/discover.py -> build/lib/galaxy/model/store 2025-12-17T14:19:09,148 copying galaxy/model/store/_bco_convert_utils.py -> build/lib/galaxy/model/store 2025-12-17T14:19:09,150 copying galaxy/model/store/__init__.py -> build/lib/galaxy/model/store 2025-12-17T14:19:09,155 copying galaxy/model/store/ro_crate_utils.py -> build/lib/galaxy/model/store 2025-12-17T14:19:09,158 creating build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,159 copying galaxy/model/unittest_utils/data_app.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,162 copying galaxy/model/unittest_utils/utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,164 copying galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,165 copying galaxy/model/unittest_utils/db_helpers.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,167 copying galaxy/model/unittest_utils/__init__.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,169 copying galaxy/model/unittest_utils/store_fixtures.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,172 copying galaxy/model/unittest_utils/model_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,174 copying galaxy/model/unittest_utils/beaker_testing_utils.py -> build/lib/galaxy/model/unittest_utils 2025-12-17T14:19:09,177 creating build/lib/galaxy/model/db 2025-12-17T14:19:09,178 copying galaxy/model/db/library.py -> build/lib/galaxy/model/db 2025-12-17T14:19:09,180 copying galaxy/model/db/role.py -> build/lib/galaxy/model/db 2025-12-17T14:19:09,182 copying galaxy/model/db/user.py -> build/lib/galaxy/model/db 2025-12-17T14:19:09,185 copying galaxy/model/db/__init__.py -> build/lib/galaxy/model/db 2025-12-17T14:19:09,187 creating build/lib/galaxy/model/migrations 2025-12-17T14:19:09,188 copying galaxy/model/migrations/base.py -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,191 copying galaxy/model/migrations/util.py -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,194 copying galaxy/model/migrations/scripts.py -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,196 copying galaxy/model/migrations/__init__.py -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,199 copying galaxy/model/migrations/dbscript.py -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,201 copying galaxy/model/migrations/exceptions.py -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,203 creating build/lib/galaxy/model/triggers 2025-12-17T14:19:09,204 copying galaxy/model/triggers/__init__.py -> build/lib/galaxy/model/triggers 2025-12-17T14:19:09,206 copying galaxy/model/triggers/update_audit_table.py -> build/lib/galaxy/model/triggers 2025-12-17T14:19:09,209 creating build/lib/galaxy/model/orm 2025-12-17T14:19:09,210 copying galaxy/model/orm/util.py -> build/lib/galaxy/model/orm 2025-12-17T14:19:09,212 copying galaxy/model/orm/scripts.py -> build/lib/galaxy/model/orm 2025-12-17T14:19:09,214 copying galaxy/model/orm/now.py -> build/lib/galaxy/model/orm 2025-12-17T14:19:09,216 copying galaxy/model/orm/__init__.py -> build/lib/galaxy/model/orm 2025-12-17T14:19:09,218 copying galaxy/model/orm/engine_factory.py -> build/lib/galaxy/model/orm 2025-12-17T14:19:09,221 creating build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,222 copying galaxy/model/dataset_collections/types/semantics.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,224 copying galaxy/model/dataset_collections/types/list.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,226 copying galaxy/model/dataset_collections/types/paired.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,228 copying galaxy/model/dataset_collections/types/sample_sheet_workbook.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,231 copying galaxy/model/dataset_collections/types/record.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,234 copying galaxy/model/dataset_collections/types/__init__.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,236 copying galaxy/model/dataset_collections/types/sample_sheet.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,238 copying galaxy/model/dataset_collections/types/paired_or_unpaired.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,240 copying galaxy/model/dataset_collections/types/sample_sheet_util.py -> build/lib/galaxy/model/dataset_collections/types 2025-12-17T14:19:09,243 creating build/lib/galaxy/model/migrations/data_fixes 2025-12-17T14:19:09,244 copying galaxy/model/migrations/data_fixes/user_table_fixer.py -> build/lib/galaxy/model/migrations/data_fixes 2025-12-17T14:19:09,246 copying galaxy/model/migrations/data_fixes/__init__.py -> build/lib/galaxy/model/migrations/data_fixes 2025-12-17T14:19:09,248 copying galaxy/model/migrations/data_fixes/association_table_fixer.py -> build/lib/galaxy/model/migrations/data_fixes 2025-12-17T14:19:09,252 creating build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,253 copying galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,255 copying galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,258 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,260 copying galaxy/datatypes/converters/bed_to_gff_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,262 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,264 copying galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,267 copying galaxy/datatypes/converters/interval_to_fli.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,269 copying galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,271 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,273 copying galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,275 copying galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,277 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,279 copying galaxy/datatypes/converters/__init__.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,280 copying galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,282 copying galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,284 copying galaxy/datatypes/converters/fasta_to_len.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,286 copying galaxy/datatypes/converters/gff_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,288 copying galaxy/datatypes/converters/lped_to_fped_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,290 copying galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,292 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,294 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,296 copying galaxy/datatypes/converters/tabular_csv.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,298 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,300 copying galaxy/datatypes/converters/maf_to_interval_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,302 copying galaxy/datatypes/converters/interval_to_bed_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,304 copying galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,307 creating build/lib/galaxy/datatypes/display_applications 2025-12-17T14:19:09,308 copying galaxy/datatypes/display_applications/util.py -> build/lib/galaxy/datatypes/display_applications 2025-12-17T14:19:09,310 copying galaxy/datatypes/display_applications/parameters.py -> build/lib/galaxy/datatypes/display_applications 2025-12-17T14:19:09,313 copying galaxy/datatypes/display_applications/__init__.py -> build/lib/galaxy/datatypes/display_applications 2025-12-17T14:19:09,315 copying galaxy/datatypes/display_applications/application.py -> build/lib/galaxy/datatypes/display_applications 2025-12-17T14:19:09,318 creating build/lib/galaxy/datatypes/util 2025-12-17T14:19:09,319 copying galaxy/datatypes/util/generic_util.py -> build/lib/galaxy/datatypes/util 2025-12-17T14:19:09,321 copying galaxy/datatypes/util/__init__.py -> build/lib/galaxy/datatypes/util 2025-12-17T14:19:09,323 copying galaxy/datatypes/util/maf_utilities.py -> build/lib/galaxy/datatypes/util 2025-12-17T14:19:09,326 copying galaxy/datatypes/util/gff_util.py -> build/lib/galaxy/datatypes/util 2025-12-17T14:19:09,330 creating build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,331 copying galaxy/datatypes/dataproviders/base.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,333 copying galaxy/datatypes/dataproviders/external.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,336 copying galaxy/datatypes/dataproviders/hierarchy.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,338 copying galaxy/datatypes/dataproviders/dataset.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,341 copying galaxy/datatypes/dataproviders/column.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,344 copying galaxy/datatypes/dataproviders/chunk.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,346 copying galaxy/datatypes/dataproviders/__init__.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,348 copying galaxy/datatypes/dataproviders/decorators.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,350 copying galaxy/datatypes/dataproviders/line.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,353 copying galaxy/datatypes/dataproviders/exceptions.py -> build/lib/galaxy/datatypes/dataproviders 2025-12-17T14:19:09,355 running egg_info 2025-12-17T14:19:09,369 writing galaxy_data.egg-info/PKG-INFO 2025-12-17T14:19:09,378 writing dependency_links to galaxy_data.egg-info/dependency_links.txt 2025-12-17T14:19:09,379 writing entry points to galaxy_data.egg-info/entry_points.txt 2025-12-17T14:19:09,381 writing requirements to galaxy_data.egg-info/requires.txt 2025-12-17T14:19:09,383 writing top-level names to galaxy_data.egg-info/top_level.txt 2025-12-17T14:19:09,414 reading manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-17T14:19:09,434 reading manifest template 'MANIFEST.in' 2025-12-17T14:19:09,474 adding license file 'LICENSE' 2025-12-17T14:19:09,493 writing manifest file 'galaxy_data.egg-info/SOURCES.txt' 2025-12-17T14:19:09,497 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.biom' is absent from the `packages` configuration. 2025-12-17T14:19:09,498 !! 2025-12-17T14:19:09,499 ******************************************************************************** 2025-12-17T14:19:09,499 ############################ 2025-12-17T14:19:09,500 # Package would be ignored # 2025-12-17T14:19:09,501 ############################ 2025-12-17T14:19:09,501 Python recognizes 'galaxy.datatypes.display_applications.configs.biom' as an importable package[^1], 2025-12-17T14:19:09,502 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,503 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,504 package, please make sure that 'galaxy.datatypes.display_applications.configs.biom' is explicitly added 2025-12-17T14:19:09,504 to the `packages` configuration field. 2025-12-17T14:19:09,506 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,506 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,507 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,508 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,509 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,510 If you don't want 'galaxy.datatypes.display_applications.configs.biom' to be distributed and are 2025-12-17T14:19:09,511 already explicitly excluding 'galaxy.datatypes.display_applications.configs.biom' via 2025-12-17T14:19:09,511 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,512 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,513 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,514 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,515 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,517 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,517 even if it does not contain any `.py` files. 2025-12-17T14:19:09,518 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,518 directory, all directories are treated like packages. 2025-12-17T14:19:09,519 ******************************************************************************** 2025-12-17T14:19:09,520 !! 2025-12-17T14:19:09,520 check.warn(importable) 2025-12-17T14:19:09,521 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.ensembl' is absent from the `packages` configuration. 2025-12-17T14:19:09,521 !! 2025-12-17T14:19:09,522 ******************************************************************************** 2025-12-17T14:19:09,523 ############################ 2025-12-17T14:19:09,523 # Package would be ignored # 2025-12-17T14:19:09,524 ############################ 2025-12-17T14:19:09,524 Python recognizes 'galaxy.datatypes.display_applications.configs.ensembl' as an importable package[^1], 2025-12-17T14:19:09,524 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,525 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,526 package, please make sure that 'galaxy.datatypes.display_applications.configs.ensembl' is explicitly added 2025-12-17T14:19:09,526 to the `packages` configuration field. 2025-12-17T14:19:09,527 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,527 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,528 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,529 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,530 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,531 If you don't want 'galaxy.datatypes.display_applications.configs.ensembl' to be distributed and are 2025-12-17T14:19:09,532 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ensembl' via 2025-12-17T14:19:09,532 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,533 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,534 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,535 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,536 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,538 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,538 even if it does not contain any `.py` files. 2025-12-17T14:19:09,539 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,539 directory, all directories are treated like packages. 2025-12-17T14:19:09,540 ******************************************************************************** 2025-12-17T14:19:09,541 !! 2025-12-17T14:19:09,542 check.warn(importable) 2025-12-17T14:19:09,542 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.gbrowse' is absent from the `packages` configuration. 2025-12-17T14:19:09,543 !! 2025-12-17T14:19:09,544 ******************************************************************************** 2025-12-17T14:19:09,544 ############################ 2025-12-17T14:19:09,545 # Package would be ignored # 2025-12-17T14:19:09,546 ############################ 2025-12-17T14:19:09,546 Python recognizes 'galaxy.datatypes.display_applications.configs.gbrowse' as an importable package[^1], 2025-12-17T14:19:09,547 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,548 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,548 package, please make sure that 'galaxy.datatypes.display_applications.configs.gbrowse' is explicitly added 2025-12-17T14:19:09,549 to the `packages` configuration field. 2025-12-17T14:19:09,550 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,550 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,551 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,552 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,553 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,554 If you don't want 'galaxy.datatypes.display_applications.configs.gbrowse' to be distributed and are 2025-12-17T14:19:09,554 already explicitly excluding 'galaxy.datatypes.display_applications.configs.gbrowse' via 2025-12-17T14:19:09,555 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,555 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,556 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,557 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,558 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,560 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,560 even if it does not contain any `.py` files. 2025-12-17T14:19:09,561 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,561 directory, all directories are treated like packages. 2025-12-17T14:19:09,562 ******************************************************************************** 2025-12-17T14:19:09,563 !! 2025-12-17T14:19:09,564 check.warn(importable) 2025-12-17T14:19:09,564 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.icn3d' is absent from the `packages` configuration. 2025-12-17T14:19:09,565 !! 2025-12-17T14:19:09,566 ******************************************************************************** 2025-12-17T14:19:09,566 ############################ 2025-12-17T14:19:09,567 # Package would be ignored # 2025-12-17T14:19:09,567 ############################ 2025-12-17T14:19:09,568 Python recognizes 'galaxy.datatypes.display_applications.configs.icn3d' as an importable package[^1], 2025-12-17T14:19:09,569 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,570 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,570 package, please make sure that 'galaxy.datatypes.display_applications.configs.icn3d' is explicitly added 2025-12-17T14:19:09,571 to the `packages` configuration field. 2025-12-17T14:19:09,572 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,573 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,573 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,574 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,577 If you don't want 'galaxy.datatypes.display_applications.configs.icn3d' to be distributed and are 2025-12-17T14:19:09,577 already explicitly excluding 'galaxy.datatypes.display_applications.configs.icn3d' via 2025-12-17T14:19:09,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,579 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,579 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,580 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,581 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,583 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,583 even if it does not contain any `.py` files. 2025-12-17T14:19:09,584 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,584 directory, all directories are treated like packages. 2025-12-17T14:19:09,585 ******************************************************************************** 2025-12-17T14:19:09,586 !! 2025-12-17T14:19:09,586 check.warn(importable) 2025-12-17T14:19:09,586 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.igb' is absent from the `packages` configuration. 2025-12-17T14:19:09,587 !! 2025-12-17T14:19:09,588 ******************************************************************************** 2025-12-17T14:19:09,589 ############################ 2025-12-17T14:19:09,589 # Package would be ignored # 2025-12-17T14:19:09,589 ############################ 2025-12-17T14:19:09,590 Python recognizes 'galaxy.datatypes.display_applications.configs.igb' as an importable package[^1], 2025-12-17T14:19:09,591 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,592 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,592 package, please make sure that 'galaxy.datatypes.display_applications.configs.igb' is explicitly added 2025-12-17T14:19:09,593 to the `packages` configuration field. 2025-12-17T14:19:09,594 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,595 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,595 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,597 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,598 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,599 If you don't want 'galaxy.datatypes.display_applications.configs.igb' to be distributed and are 2025-12-17T14:19:09,599 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igb' via 2025-12-17T14:19:09,600 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,601 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,602 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,603 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,605 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,606 even if it does not contain any `.py` files. 2025-12-17T14:19:09,606 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,607 directory, all directories are treated like packages. 2025-12-17T14:19:09,608 ******************************************************************************** 2025-12-17T14:19:09,609 !! 2025-12-17T14:19:09,609 check.warn(importable) 2025-12-17T14:19:09,610 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.igv' is absent from the `packages` configuration. 2025-12-17T14:19:09,610 !! 2025-12-17T14:19:09,611 ******************************************************************************** 2025-12-17T14:19:09,612 ############################ 2025-12-17T14:19:09,612 # Package would be ignored # 2025-12-17T14:19:09,613 ############################ 2025-12-17T14:19:09,613 Python recognizes 'galaxy.datatypes.display_applications.configs.igv' as an importable package[^1], 2025-12-17T14:19:09,614 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,615 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,615 package, please make sure that 'galaxy.datatypes.display_applications.configs.igv' is explicitly added 2025-12-17T14:19:09,616 to the `packages` configuration field. 2025-12-17T14:19:09,617 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,618 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,619 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,620 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,621 If you don't want 'galaxy.datatypes.display_applications.configs.igv' to be distributed and are 2025-12-17T14:19:09,622 already explicitly excluding 'galaxy.datatypes.display_applications.configs.igv' via 2025-12-17T14:19:09,622 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,623 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,623 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,624 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,625 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,627 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,627 even if it does not contain any `.py` files. 2025-12-17T14:19:09,628 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,628 directory, all directories are treated like packages. 2025-12-17T14:19:09,629 ******************************************************************************** 2025-12-17T14:19:09,630 !! 2025-12-17T14:19:09,630 check.warn(importable) 2025-12-17T14:19:09,631 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.image' is absent from the `packages` configuration. 2025-12-17T14:19:09,631 !! 2025-12-17T14:19:09,632 ******************************************************************************** 2025-12-17T14:19:09,633 ############################ 2025-12-17T14:19:09,634 # Package would be ignored # 2025-12-17T14:19:09,634 ############################ 2025-12-17T14:19:09,635 Python recognizes 'galaxy.datatypes.display_applications.configs.image' as an importable package[^1], 2025-12-17T14:19:09,635 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,636 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,637 package, please make sure that 'galaxy.datatypes.display_applications.configs.image' is explicitly added 2025-12-17T14:19:09,638 to the `packages` configuration field. 2025-12-17T14:19:09,639 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,639 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,640 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,640 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,641 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,642 If you don't want 'galaxy.datatypes.display_applications.configs.image' to be distributed and are 2025-12-17T14:19:09,643 already explicitly excluding 'galaxy.datatypes.display_applications.configs.image' via 2025-12-17T14:19:09,643 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,644 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,644 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,645 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,646 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,648 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,648 even if it does not contain any `.py` files. 2025-12-17T14:19:09,649 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,650 directory, all directories are treated like packages. 2025-12-17T14:19:09,650 ******************************************************************************** 2025-12-17T14:19:09,651 !! 2025-12-17T14:19:09,652 check.warn(importable) 2025-12-17T14:19:09,652 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.intermine' is absent from the `packages` configuration. 2025-12-17T14:19:09,653 !! 2025-12-17T14:19:09,654 ******************************************************************************** 2025-12-17T14:19:09,655 ############################ 2025-12-17T14:19:09,655 # Package would be ignored # 2025-12-17T14:19:09,656 ############################ 2025-12-17T14:19:09,656 Python recognizes 'galaxy.datatypes.display_applications.configs.intermine' as an importable package[^1], 2025-12-17T14:19:09,657 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,658 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,658 package, please make sure that 'galaxy.datatypes.display_applications.configs.intermine' is explicitly added 2025-12-17T14:19:09,659 to the `packages` configuration field. 2025-12-17T14:19:09,660 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,661 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,663 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,664 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,665 If you don't want 'galaxy.datatypes.display_applications.configs.intermine' to be distributed and are 2025-12-17T14:19:09,666 already explicitly excluding 'galaxy.datatypes.display_applications.configs.intermine' via 2025-12-17T14:19:09,666 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,667 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,668 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,669 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,670 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,671 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,672 even if it does not contain any `.py` files. 2025-12-17T14:19:09,672 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,672 directory, all directories are treated like packages. 2025-12-17T14:19:09,673 ******************************************************************************** 2025-12-17T14:19:09,674 !! 2025-12-17T14:19:09,674 check.warn(importable) 2025-12-17T14:19:09,675 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.iobio' is absent from the `packages` configuration. 2025-12-17T14:19:09,675 !! 2025-12-17T14:19:09,676 ******************************************************************************** 2025-12-17T14:19:09,677 ############################ 2025-12-17T14:19:09,677 # Package would be ignored # 2025-12-17T14:19:09,678 ############################ 2025-12-17T14:19:09,678 Python recognizes 'galaxy.datatypes.display_applications.configs.iobio' as an importable package[^1], 2025-12-17T14:19:09,679 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,680 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,680 package, please make sure that 'galaxy.datatypes.display_applications.configs.iobio' is explicitly added 2025-12-17T14:19:09,681 to the `packages` configuration field. 2025-12-17T14:19:09,682 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,683 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,684 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,685 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,687 If you don't want 'galaxy.datatypes.display_applications.configs.iobio' to be distributed and are 2025-12-17T14:19:09,687 already explicitly excluding 'galaxy.datatypes.display_applications.configs.iobio' via 2025-12-17T14:19:09,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,689 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,690 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,691 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,693 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,693 even if it does not contain any `.py` files. 2025-12-17T14:19:09,694 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,695 directory, all directories are treated like packages. 2025-12-17T14:19:09,695 ******************************************************************************** 2025-12-17T14:19:09,696 !! 2025-12-17T14:19:09,697 check.warn(importable) 2025-12-17T14:19:09,698 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.minerva' is absent from the `packages` configuration. 2025-12-17T14:19:09,698 !! 2025-12-17T14:19:09,699 ******************************************************************************** 2025-12-17T14:19:09,700 ############################ 2025-12-17T14:19:09,700 # Package would be ignored # 2025-12-17T14:19:09,701 ############################ 2025-12-17T14:19:09,701 Python recognizes 'galaxy.datatypes.display_applications.configs.minerva' as an importable package[^1], 2025-12-17T14:19:09,702 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,703 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,703 package, please make sure that 'galaxy.datatypes.display_applications.configs.minerva' is explicitly added 2025-12-17T14:19:09,704 to the `packages` configuration field. 2025-12-17T14:19:09,705 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,706 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,706 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,707 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,708 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,709 If you don't want 'galaxy.datatypes.display_applications.configs.minerva' to be distributed and are 2025-12-17T14:19:09,709 already explicitly excluding 'galaxy.datatypes.display_applications.configs.minerva' via 2025-12-17T14:19:09,710 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,710 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,711 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,712 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,715 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,715 even if it does not contain any `.py` files. 2025-12-17T14:19:09,716 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,716 directory, all directories are treated like packages. 2025-12-17T14:19:09,717 ******************************************************************************** 2025-12-17T14:19:09,718 !! 2025-12-17T14:19:09,719 check.warn(importable) 2025-12-17T14:19:09,719 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is absent from the `packages` configuration. 2025-12-17T14:19:09,720 !! 2025-12-17T14:19:09,721 ******************************************************************************** 2025-12-17T14:19:09,721 ############################ 2025-12-17T14:19:09,722 # Package would be ignored # 2025-12-17T14:19:09,723 ############################ 2025-12-17T14:19:09,723 Python recognizes 'galaxy.datatypes.display_applications.configs.qiime.qiime2' as an importable package[^1], 2025-12-17T14:19:09,724 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,725 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,725 package, please make sure that 'galaxy.datatypes.display_applications.configs.qiime.qiime2' is explicitly added 2025-12-17T14:19:09,726 to the `packages` configuration field. 2025-12-17T14:19:09,727 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,728 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,728 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,729 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,730 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,731 If you don't want 'galaxy.datatypes.display_applications.configs.qiime.qiime2' to be distributed and are 2025-12-17T14:19:09,731 already explicitly excluding 'galaxy.datatypes.display_applications.configs.qiime.qiime2' via 2025-12-17T14:19:09,732 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,732 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,733 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,734 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,735 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,736 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,737 even if it does not contain any `.py` files. 2025-12-17T14:19:09,737 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,738 directory, all directories are treated like packages. 2025-12-17T14:19:09,738 ******************************************************************************** 2025-12-17T14:19:09,739 !! 2025-12-17T14:19:09,740 check.warn(importable) 2025-12-17T14:19:09,740 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.rviewer' is absent from the `packages` configuration. 2025-12-17T14:19:09,741 !! 2025-12-17T14:19:09,742 ******************************************************************************** 2025-12-17T14:19:09,743 ############################ 2025-12-17T14:19:09,743 # Package would be ignored # 2025-12-17T14:19:09,744 ############################ 2025-12-17T14:19:09,744 Python recognizes 'galaxy.datatypes.display_applications.configs.rviewer' as an importable package[^1], 2025-12-17T14:19:09,745 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,746 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,747 package, please make sure that 'galaxy.datatypes.display_applications.configs.rviewer' is explicitly added 2025-12-17T14:19:09,747 to the `packages` configuration field. 2025-12-17T14:19:09,749 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,750 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,751 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,752 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,753 If you don't want 'galaxy.datatypes.display_applications.configs.rviewer' to be distributed and are 2025-12-17T14:19:09,754 already explicitly excluding 'galaxy.datatypes.display_applications.configs.rviewer' via 2025-12-17T14:19:09,755 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,756 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,757 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,760 even if it does not contain any `.py` files. 2025-12-17T14:19:09,760 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,761 directory, all directories are treated like packages. 2025-12-17T14:19:09,762 ******************************************************************************** 2025-12-17T14:19:09,762 !! 2025-12-17T14:19:09,763 check.warn(importable) 2025-12-17T14:19:09,763 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.configs.ucsc' is absent from the `packages` configuration. 2025-12-17T14:19:09,764 !! 2025-12-17T14:19:09,765 ******************************************************************************** 2025-12-17T14:19:09,766 ############################ 2025-12-17T14:19:09,766 # Package would be ignored # 2025-12-17T14:19:09,767 ############################ 2025-12-17T14:19:09,767 Python recognizes 'galaxy.datatypes.display_applications.configs.ucsc' as an importable package[^1], 2025-12-17T14:19:09,768 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,769 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,769 package, please make sure that 'galaxy.datatypes.display_applications.configs.ucsc' is explicitly added 2025-12-17T14:19:09,770 to the `packages` configuration field. 2025-12-17T14:19:09,771 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,772 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,773 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,774 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,775 If you don't want 'galaxy.datatypes.display_applications.configs.ucsc' to be distributed and are 2025-12-17T14:19:09,776 already explicitly excluding 'galaxy.datatypes.display_applications.configs.ucsc' via 2025-12-17T14:19:09,776 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,777 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,777 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,779 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,779 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,781 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,782 even if it does not contain any `.py` files. 2025-12-17T14:19:09,782 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,783 directory, all directories are treated like packages. 2025-12-17T14:19:09,783 ******************************************************************************** 2025-12-17T14:19:09,785 !! 2025-12-17T14:19:09,785 check.warn(importable) 2025-12-17T14:19:09,786 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.datatypes.display_applications.xsd' is absent from the `packages` configuration. 2025-12-17T14:19:09,786 !! 2025-12-17T14:19:09,787 ******************************************************************************** 2025-12-17T14:19:09,788 ############################ 2025-12-17T14:19:09,788 # Package would be ignored # 2025-12-17T14:19:09,789 ############################ 2025-12-17T14:19:09,789 Python recognizes 'galaxy.datatypes.display_applications.xsd' as an importable package[^1], 2025-12-17T14:19:09,790 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,791 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,791 package, please make sure that 'galaxy.datatypes.display_applications.xsd' is explicitly added 2025-12-17T14:19:09,792 to the `packages` configuration field. 2025-12-17T14:19:09,793 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,793 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,793 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,794 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,795 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,797 If you don't want 'galaxy.datatypes.display_applications.xsd' to be distributed and are 2025-12-17T14:19:09,797 already explicitly excluding 'galaxy.datatypes.display_applications.xsd' via 2025-12-17T14:19:09,798 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,798 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,799 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,800 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,801 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,802 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,803 even if it does not contain any `.py` files. 2025-12-17T14:19:09,803 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,804 directory, all directories are treated like packages. 2025-12-17T14:19:09,804 ******************************************************************************** 2025-12-17T14:19:09,805 !! 2025-12-17T14:19:09,806 check.warn(importable) 2025-12-17T14:19:09,806 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic' is absent from the `packages` configuration. 2025-12-17T14:19:09,807 !! 2025-12-17T14:19:09,808 ******************************************************************************** 2025-12-17T14:19:09,809 ############################ 2025-12-17T14:19:09,809 # Package would be ignored # 2025-12-17T14:19:09,810 ############################ 2025-12-17T14:19:09,810 Python recognizes 'galaxy.model.migrations.alembic' as an importable package[^1], 2025-12-17T14:19:09,811 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,812 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,813 package, please make sure that 'galaxy.model.migrations.alembic' is explicitly added 2025-12-17T14:19:09,813 to the `packages` configuration field. 2025-12-17T14:19:09,814 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,816 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,817 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,818 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,819 If you don't want 'galaxy.model.migrations.alembic' to be distributed and are 2025-12-17T14:19:09,819 already explicitly excluding 'galaxy.model.migrations.alembic' via 2025-12-17T14:19:09,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,820 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,821 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,822 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,823 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,824 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,824 even if it does not contain any `.py` files. 2025-12-17T14:19:09,825 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,825 directory, all directories are treated like packages. 2025-12-17T14:19:09,826 ******************************************************************************** 2025-12-17T14:19:09,827 !! 2025-12-17T14:19:09,827 check.warn(importable) 2025-12-17T14:19:09,828 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic.versions_gxy' is absent from the `packages` configuration. 2025-12-17T14:19:09,828 !! 2025-12-17T14:19:09,829 ******************************************************************************** 2025-12-17T14:19:09,830 ############################ 2025-12-17T14:19:09,831 # Package would be ignored # 2025-12-17T14:19:09,831 ############################ 2025-12-17T14:19:09,831 Python recognizes 'galaxy.model.migrations.alembic.versions_gxy' as an importable package[^1], 2025-12-17T14:19:09,832 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,833 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,834 package, please make sure that 'galaxy.model.migrations.alembic.versions_gxy' is explicitly added 2025-12-17T14:19:09,834 to the `packages` configuration field. 2025-12-17T14:19:09,835 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,836 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,836 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,837 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,838 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,840 If you don't want 'galaxy.model.migrations.alembic.versions_gxy' to be distributed and are 2025-12-17T14:19:09,840 already explicitly excluding 'galaxy.model.migrations.alembic.versions_gxy' via 2025-12-17T14:19:09,841 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,842 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,843 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,844 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,846 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,846 even if it does not contain any `.py` files. 2025-12-17T14:19:09,847 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,848 directory, all directories are treated like packages. 2025-12-17T14:19:09,848 ******************************************************************************** 2025-12-17T14:19:09,849 !! 2025-12-17T14:19:09,850 check.warn(importable) 2025-12-17T14:19:09,850 /tmp/pip-build-env-nwztgiyp/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'galaxy.model.migrations.alembic.versions_tsi' is absent from the `packages` configuration. 2025-12-17T14:19:09,850 !! 2025-12-17T14:19:09,851 ******************************************************************************** 2025-12-17T14:19:09,852 ############################ 2025-12-17T14:19:09,852 # Package would be ignored # 2025-12-17T14:19:09,853 ############################ 2025-12-17T14:19:09,853 Python recognizes 'galaxy.model.migrations.alembic.versions_tsi' as an importable package[^1], 2025-12-17T14:19:09,854 but it is absent from setuptools' `packages` configuration. 2025-12-17T14:19:09,855 This leads to an ambiguous overall configuration. If you want to distribute this 2025-12-17T14:19:09,855 package, please make sure that 'galaxy.model.migrations.alembic.versions_tsi' is explicitly added 2025-12-17T14:19:09,856 to the `packages` configuration field. 2025-12-17T14:19:09,857 Alternatively, you can also rely on setuptools' discovery methods 2025-12-17T14:19:09,857 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2025-12-17T14:19:09,858 instead of `find_packages(...)`/`find:`). 2025-12-17T14:19:09,859 You can read more about "package discovery" on setuptools documentation page: 2025-12-17T14:19:09,860 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2025-12-17T14:19:09,861 If you don't want 'galaxy.model.migrations.alembic.versions_tsi' to be distributed and are 2025-12-17T14:19:09,861 already explicitly excluding 'galaxy.model.migrations.alembic.versions_tsi' via 2025-12-17T14:19:09,862 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2025-12-17T14:19:09,862 you can try to use `exclude_package_data`, or `include-package-data=False` in 2025-12-17T14:19:09,863 combination with a more fine grained `package-data` configuration. 2025-12-17T14:19:09,864 You can read more about "package data files" on setuptools documentation page: 2025-12-17T14:19:09,865 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2025-12-17T14:19:09,867 [^1]: For Python, any directory (with suitable naming) can be imported, 2025-12-17T14:19:09,868 even if it does not contain any `.py` files. 2025-12-17T14:19:09,868 On the other hand, currently there is no concept of package data 2025-12-17T14:19:09,869 directory, all directories are treated like packages. 2025-12-17T14:19:09,869 ******************************************************************************** 2025-12-17T14:19:09,870 !! 2025-12-17T14:19:09,871 check.warn(importable) 2025-12-17T14:19:09,872 copying galaxy/py.typed -> build/lib/galaxy 2025-12-17T14:19:09,872 copying galaxy/datatypes/set_metadata_tool.xml -> build/lib/galaxy/datatypes 2025-12-17T14:19:09,873 copying galaxy/model/dataset_collections/rule_targets.yml -> build/lib/galaxy/model/dataset_collections 2025-12-17T14:19:09,873 copying galaxy/model/migrations/README.md -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,874 copying galaxy/model/migrations/alembic.ini -> build/lib/galaxy/model/migrations 2025-12-17T14:19:09,875 creating build/lib/galaxy/model/migrations/alembic 2025-12-17T14:19:09,875 copying galaxy/model/migrations/alembic/env.py -> build/lib/galaxy/model/migrations/alembic 2025-12-17T14:19:09,876 copying galaxy/model/migrations/alembic/script.py.mako -> build/lib/galaxy/model/migrations/alembic 2025-12-17T14:19:09,876 creating build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,877 copying galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,877 copying galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,878 copying galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,878 copying galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,879 copying galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,879 copying galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,880 copying galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,881 copying galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,881 copying galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,882 copying galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,882 copying galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,883 copying galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,883 copying galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,884 copying galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,884 copying galaxy/model/migrations/alembic/versions_gxy/338d0e5deb03_add_cleanup_event_user_assoc_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,885 copying galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,885 copying galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,886 copying galaxy/model/migrations/alembic/versions_gxy/3af58c192752_implement_sample_sheets.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,886 copying galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,887 copying galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,888 copying galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,888 copying galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,889 copying galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,889 copying galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,890 copying galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,890 copying galaxy/model/migrations/alembic/versions_gxy/63dc6cca023f_add_is_webapp_column_to_worker_process.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,891 copying galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,892 copying galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,892 copying galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,893 copying galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,893 copying galaxy/model/migrations/alembic/versions_gxy/81362686fd64_add_origin_column_to_landing_requests.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,894 copying galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,895 copying galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,895 copying galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,896 copying galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,896 copying galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,897 copying galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,897 copying galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,898 copying galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,898 copying galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,899 copying galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,900 copying galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,900 copying galaxy/model/migrations/alembic/versions_gxy/c0959ad462b2_add_tool_id_and_tool_version_to_tool_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,901 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,902 copying galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,902 copying galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,903 copying galaxy/model/migrations/alembic/versions_gxy/c44ae5f3dcf1_merge_25_0_into_dev.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,903 copying galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,904 copying galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,904 copying galaxy/model/migrations/alembic/versions_gxy/c8c9bd29810d_add_user_credentials_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,905 copying galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,905 copying galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,906 copying galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,906 copying galaxy/model/migrations/alembic/versions_gxy/cd26484899fb_add_job_credentials_context_association_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,907 copying galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,907 copying galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,908 copying galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,908 copying galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,909 copying galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,910 copying galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,910 copying galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,911 copying galaxy/model/migrations/alembic/versions_gxy/e382f8eb5e12_create_landing_request_association_tables.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,911 copying galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,912 copying galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,913 copying galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,913 copying galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,914 copying galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,914 copying galaxy/model/migrations/alembic/versions_gxy/fb16d09348db_dataset_source_requested_transform.py -> build/lib/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:09,915 creating build/lib/galaxy/model/migrations/alembic/versions_tsi 2025-12-17T14:19:09,915 copying galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/lib/galaxy/model/migrations/alembic/versions_tsi 2025-12-17T14:19:09,916 copying galaxy/datatypes/converters/archive_to_directory.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,917 copying galaxy/datatypes/converters/bam_to_bai.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,917 copying galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,918 copying galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,918 copying galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,919 copying galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,919 copying galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,920 copying galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,920 copying galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,921 copying galaxy/datatypes/converters/bigbed_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,921 copying galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,922 copying galaxy/datatypes/converters/biom.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,923 copying galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,923 copying galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,924 copying galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,924 copying galaxy/datatypes/converters/csv_to_tabular.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,925 copying galaxy/datatypes/converters/fasta_to_2bit.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,926 copying galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,926 copying galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,927 copying galaxy/datatypes/converters/fasta_to_fai.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,927 copying galaxy/datatypes/converters/fasta_to_len.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,928 copying galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,928 copying galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,929 copying galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,930 copying galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,930 copying galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,931 copying galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,932 copying galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,932 copying galaxy/datatypes/converters/gro_to_pdb.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,933 copying galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,933 copying galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,934 copying galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,934 copying galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,935 copying galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,935 copying galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,936 copying galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,936 copying galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,937 copying galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,937 copying galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,938 copying galaxy/datatypes/converters/len_to_linecount.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,938 copying galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,939 copying galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,939 copying galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,940 copying galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,940 copying galaxy/datatypes/converters/mdconvert.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,941 copying galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,942 copying galaxy/datatypes/converters/molecules_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,942 copying galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,943 copying galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,943 copying galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,944 copying galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,945 copying galaxy/datatypes/converters/pdb_to_gro.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,945 copying galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,946 copying galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,946 copying galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,947 copying galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,947 copying galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,948 copying galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,949 copying galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,950 copying galaxy/datatypes/converters/tabular_to_csv.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,950 copying galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,951 copying galaxy/datatypes/converters/tar_to_directory.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,951 copying galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,952 copying galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,952 copying galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,953 copying galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,953 copying galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,954 copying galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,954 copying galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,955 copying galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/lib/galaxy/datatypes/converters 2025-12-17T14:19:09,956 creating build/lib/galaxy/datatypes/display_applications/configs/biom 2025-12-17T14:19:09,956 copying galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/biom 2025-12-17T14:19:09,957 creating build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:09,958 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:09,958 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:09,959 copying galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:09,959 creating build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:09,960 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:09,960 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:09,961 copying galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:09,961 creating build/lib/galaxy/datatypes/display_applications/configs/icn3d 2025-12-17T14:19:09,962 copying galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/icn3d 2025-12-17T14:19:09,963 creating build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,963 copying galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,964 copying galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,964 copying galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,967 copying galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,969 copying galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,971 copying galaxy/datatypes/display_applications/configs/igb/cram.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,973 copying galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,976 copying galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:09,978 creating build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,979 copying galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,982 copying galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,984 copying galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,987 copying galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,989 copying galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,992 copying galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,995 copying galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:09,997 creating build/lib/galaxy/datatypes/display_applications/configs/image 2025-12-17T14:19:09,998 copying galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/lib/galaxy/datatypes/display_applications/configs/image 2025-12-17T14:19:10,001 creating build/lib/galaxy/datatypes/display_applications/configs/intermine 2025-12-17T14:19:10,002 copying galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/lib/galaxy/datatypes/display_applications/configs/intermine 2025-12-17T14:19:10,004 creating build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-12-17T14:19:10,006 copying galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-12-17T14:19:10,008 copying galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/iobio 2025-12-17T14:19:10,010 creating build/lib/galaxy/datatypes/display_applications/configs/minerva 2025-12-17T14:19:10,012 copying galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/lib/galaxy/datatypes/display_applications/configs/minerva 2025-12-17T14:19:10,014 creating build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-17T14:19:10,016 copying galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-17T14:19:10,018 creating build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-12-17T14:19:10,019 copying galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-12-17T14:19:10,022 copying galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/rviewer 2025-12-17T14:19:10,025 creating build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,026 copying galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,028 copying galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,030 copying galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,033 copying galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,035 copying galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,037 copying galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,039 copying galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/lib/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,041 creating build/lib/galaxy/datatypes/display_applications/xsd 2025-12-17T14:19:10,042 copying galaxy/datatypes/display_applications/xsd/geda.xsd -> build/lib/galaxy/datatypes/display_applications/xsd 2025-12-17T14:19:10,072 installing to build/bdist.linux-armv7l/wheel 2025-12-17T14:19:10,072 running install 2025-12-17T14:19:10,095 running install_lib 2025-12-17T14:19:10,104 creating build/bdist.linux-armv7l/wheel 2025-12-17T14:19:10,106 creating build/bdist.linux-armv7l/wheel/galaxy 2025-12-17T14:19:10,107 copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-17T14:19:10,110 creating build/bdist.linux-armv7l/wheel/galaxy/model 2025-12-17T14:19:10,112 creating build/bdist.linux-armv7l/wheel/galaxy/model/scripts 2025-12-17T14:19:10,113 copying build/lib/galaxy/model/scripts/history_table_pruner.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-17T14:19:10,115 copying build/lib/galaxy/model/scripts/prune_history_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-17T14:19:10,117 copying build/lib/galaxy/model/scripts/delete_galaxy_sessions.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-17T14:19:10,119 copying build/lib/galaxy/model/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-17T14:19:10,121 copying build/lib/galaxy/model/scripts/delete_job_metrics.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/scripts 2025-12-17T14:19:10,123 copying build/lib/galaxy/model/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,126 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections 2025-12-17T14:19:10,127 copying build/lib/galaxy/model/dataset_collections/builder.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,130 creating build/bdist.linux-armv7l/wheel/galaxy/model/dataset_collections/types 2025-12-17T14:19:10,131 copying build/lib/galaxy/model/dataset_collections/types/semantics.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,134 copying build/lib/galaxy/model/dataset_collections/types/list.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,136 copying build/lib/galaxy/model/dataset_collections/types/paired.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,138 copying build/lib/galaxy/model/dataset_collections/types/sample_sheet_workbook.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,140 copying build/lib/galaxy/model/dataset_collections/types/record.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,142 copying build/lib/galaxy/model/dataset_collections/types/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,144 copying build/lib/galaxy/model/dataset_collections/types/sample_sheet.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,146 copying build/lib/galaxy/model/dataset_collections/types/paired_or_unpaired.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,148 copying build/lib/galaxy/model/dataset_collections/types/sample_sheet_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections/types 2025-12-17T14:19:10,150 copying build/lib/galaxy/model/dataset_collections/workbook_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,153 copying build/lib/galaxy/model/dataset_collections/adapters.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,156 copying build/lib/galaxy/model/dataset_collections/rule_target_models.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,158 copying build/lib/galaxy/model/dataset_collections/auto_identifiers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,160 copying build/lib/galaxy/model/dataset_collections/rule_target_columns.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,162 copying build/lib/galaxy/model/dataset_collections/rule_targets.yml -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,164 copying build/lib/galaxy/model/dataset_collections/auto_pairing.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,166 copying build/lib/galaxy/model/dataset_collections/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,168 copying build/lib/galaxy/model/dataset_collections/query.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,170 copying build/lib/galaxy/model/dataset_collections/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,171 copying build/lib/galaxy/model/dataset_collections/subcollections.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,173 copying build/lib/galaxy/model/dataset_collections/matching.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,176 copying build/lib/galaxy/model/dataset_collections/type_description.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,178 copying build/lib/galaxy/model/dataset_collections/structure.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/dataset_collections 2025-12-17T14:19:10,181 copying build/lib/galaxy/model/scoped_session.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,183 copying build/lib/galaxy/model/dereference.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,185 creating build/bdist.linux-armv7l/wheel/galaxy/model/tool_shed_install 2025-12-17T14:19:10,186 copying build/lib/galaxy/model/tool_shed_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/tool_shed_install 2025-12-17T14:19:10,189 copying build/lib/galaxy/model/tool_shed_install/mapping.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/tool_shed_install 2025-12-17T14:19:10,192 creating build/bdist.linux-armv7l/wheel/galaxy/model/store 2025-12-17T14:19:10,193 copying build/lib/galaxy/model/store/build_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-17T14:19:10,195 copying build/lib/galaxy/model/store/load_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-17T14:19:10,198 copying build/lib/galaxy/model/store/discover.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-17T14:19:10,201 copying build/lib/galaxy/model/store/_bco_convert_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-17T14:19:10,203 copying build/lib/galaxy/model/store/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-17T14:19:10,207 copying build/lib/galaxy/model/store/ro_crate_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/store 2025-12-17T14:19:10,211 creating build/bdist.linux-armv7l/wheel/galaxy/model/unittest_utils 2025-12-17T14:19:10,212 copying build/lib/galaxy/model/unittest_utils/data_app.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,214 copying build/lib/galaxy/model/unittest_utils/utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,216 copying build/lib/galaxy/model/unittest_utils/migration_scripts_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,218 copying build/lib/galaxy/model/unittest_utils/db_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,220 copying build/lib/galaxy/model/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,222 copying build/lib/galaxy/model/unittest_utils/store_fixtures.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,224 copying build/lib/galaxy/model/unittest_utils/model_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,227 copying build/lib/galaxy/model/unittest_utils/beaker_testing_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/unittest_utils 2025-12-17T14:19:10,228 copying build/lib/galaxy/model/deferred.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,232 creating build/bdist.linux-armv7l/wheel/galaxy/model/db 2025-12-17T14:19:10,233 copying build/lib/galaxy/model/db/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-17T14:19:10,235 copying build/lib/galaxy/model/db/role.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-17T14:19:10,236 copying build/lib/galaxy/model/db/user.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-17T14:19:10,238 copying build/lib/galaxy/model/db/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/db 2025-12-17T14:19:10,240 copying build/lib/galaxy/model/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,243 copying build/lib/galaxy/model/item_attrs.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,245 copying build/lib/galaxy/model/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,256 copying build/lib/galaxy/model/index_filter_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,258 copying build/lib/galaxy/model/none_like.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,261 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations 2025-12-17T14:19:10,262 copying build/lib/galaxy/model/migrations/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,264 copying build/lib/galaxy/model/migrations/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,267 copying build/lib/galaxy/model/migrations/scripts.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,269 copying build/lib/galaxy/model/migrations/alembic.ini -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,271 copying build/lib/galaxy/model/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,274 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/data_fixes 2025-12-17T14:19:10,275 copying build/lib/galaxy/model/migrations/data_fixes/user_table_fixer.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-12-17T14:19:10,278 copying build/lib/galaxy/model/migrations/data_fixes/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-12-17T14:19:10,280 copying build/lib/galaxy/model/migrations/data_fixes/association_table_fixer.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/data_fixes 2025-12-17T14:19:10,283 copying build/lib/galaxy/model/migrations/dbscript.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,285 copying build/lib/galaxy/model/migrations/README.md -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,287 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic 2025-12-17T14:19:10,288 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_tsi 2025-12-17T14:19:10,289 copying build/lib/galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_tsi 2025-12-17T14:19:10,291 copying build/lib/galaxy/model/migrations/alembic/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic 2025-12-17T14:19:10,296 creating build/bdist.linux-armv7l/wheel/galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,297 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,299 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,300 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,302 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/63dc6cca023f_add_is_webapp_column_to_worker_process.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,304 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,306 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,308 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,310 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,312 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,314 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,316 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,318 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,320 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,322 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,325 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,327 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c8c9bd29810d_add_user_credentials_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,329 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,331 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,333 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,334 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,336 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,338 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,340 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,342 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,344 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,346 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,348 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,349 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,352 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,353 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,355 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,357 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,359 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/fb16d09348db_dataset_source_requested_transform.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,361 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/81362686fd64_add_origin_column_to_landing_requests.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,363 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,365 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,366 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,368 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,370 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,372 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,374 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,376 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,378 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/338d0e5deb03_add_cleanup_event_user_assoc_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,380 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,382 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,384 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,386 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/3af58c192752_implement_sample_sheets.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,388 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,390 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e382f8eb5e12_create_landing_request_association_tables.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,392 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,394 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,396 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,398 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c0959ad462b2_add_tool_id_and_tool_version_to_tool_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,400 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,402 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,404 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,406 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c44ae5f3dcf1_merge_25_0_into_dev.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,408 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,409 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,412 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,413 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,416 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/cd26484899fb_add_job_credentials_context_association_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,418 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,420 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,422 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,424 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,426 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,427 copying build/lib/galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic/versions_gxy 2025-12-17T14:19:10,429 copying build/lib/galaxy/model/migrations/alembic/script.py.mako -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations/alembic 2025-12-17T14:19:10,432 copying build/lib/galaxy/model/migrations/exceptions.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/migrations 2025-12-17T14:19:10,434 copying build/lib/galaxy/model/custom_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,436 copying build/lib/galaxy/model/security.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,441 creating build/bdist.linux-armv7l/wheel/galaxy/model/triggers 2025-12-17T14:19:10,442 copying build/lib/galaxy/model/triggers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/triggers 2025-12-17T14:19:10,444 copying build/lib/galaxy/model/triggers/update_audit_table.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/triggers 2025-12-17T14:19:10,447 copying build/lib/galaxy/model/database_object_names.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,448 copying build/lib/galaxy/model/mapping.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,450 copying build/lib/galaxy/model/database_heartbeat.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,453 copying build/lib/galaxy/model/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,455 copying build/lib/galaxy/model/database_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/model 2025-12-17T14:19:10,458 creating build/bdist.linux-armv7l/wheel/galaxy/model/orm 2025-12-17T14:19:10,459 copying build/lib/galaxy/model/orm/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-17T14:19:10,461 copying build/lib/galaxy/model/orm/scripts.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-17T14:19:10,464 copying build/lib/galaxy/model/orm/now.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-17T14:19:10,466 copying build/lib/galaxy/model/orm/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-17T14:19:10,468 copying build/lib/galaxy/model/orm/engine_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/model/orm 2025-12-17T14:19:10,472 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes 2025-12-17T14:19:10,473 copying build/lib/galaxy/datatypes/anvio.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,476 copying build/lib/galaxy/datatypes/larch.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,478 copying build/lib/galaxy/datatypes/msa.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,481 copying build/lib/galaxy/datatypes/flow.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,483 copying build/lib/galaxy/datatypes/text.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,486 copying build/lib/galaxy/datatypes/goldenpath.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,489 copying build/lib/galaxy/datatypes/upload_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,492 copying build/lib/galaxy/datatypes/chrominfo.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,493 copying build/lib/galaxy/datatypes/blast.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,499 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/converters 2025-12-17T14:19:10,500 copying build/lib/galaxy/datatypes/converters/bam_to_bai.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,502 copying build/lib/galaxy/datatypes/converters/gff_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,504 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,506 copying build/lib/galaxy/datatypes/converters/biom.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,508 copying build/lib/galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,510 copying build/lib/galaxy/datatypes/converters/molecules_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,513 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,516 copying build/lib/galaxy/datatypes/converters/sam_to_unsorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,518 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,520 copying build/lib/galaxy/datatypes/converters/gz_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,522 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,524 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,527 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,530 copying build/lib/galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,532 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,534 copying build/lib/galaxy/datatypes/converters/tabular_to_csv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,536 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,538 copying build/lib/galaxy/datatypes/converters/smi_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,541 copying build/lib/galaxy/datatypes/converters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,543 copying build/lib/galaxy/datatypes/converters/bigwig_to_wig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,546 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,548 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,550 copying build/lib/galaxy/datatypes/converters/csv_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,552 copying build/lib/galaxy/datatypes/converters/smi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,554 copying build/lib/galaxy/datatypes/converters/fasta_to_len.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,557 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,560 copying build/lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,562 copying build/lib/galaxy/datatypes/converters/interval_to_tabix_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,565 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,567 copying build/lib/galaxy/datatypes/converters/interval_to_fli.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,569 copying build/lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,571 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,574 copying build/lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,576 copying build/lib/galaxy/datatypes/converters/uncompressed_to_gz.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,578 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,581 copying build/lib/galaxy/datatypes/converters/inchi_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,583 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,585 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,587 copying build/lib/galaxy/datatypes/converters/cram_to_bam_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,589 copying build/lib/galaxy/datatypes/converters/bam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,591 copying build/lib/galaxy/datatypes/converters/wig_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,593 copying build/lib/galaxy/datatypes/converters/pileup_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,595 copying build/lib/galaxy/datatypes/converters/fasta_to_2bit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,597 copying build/lib/galaxy/datatypes/converters/gff_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,599 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,602 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,604 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,606 copying build/lib/galaxy/datatypes/converters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,607 copying build/lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,610 copying build/lib/galaxy/datatypes/converters/sam_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,612 copying build/lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,614 copying build/lib/galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,616 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,618 copying build/lib/galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,621 copying build/lib/galaxy/datatypes/converters/interval_to_bgzip_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,624 copying build/lib/galaxy/datatypes/converters/cml_to_smi_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,626 copying build/lib/galaxy/datatypes/converters/gro_to_pdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,629 copying build/lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,631 copying build/lib/galaxy/datatypes/converters/tabular_to_dbnsfp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,633 copying build/lib/galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,635 copying build/lib/galaxy/datatypes/converters/to_coordinate_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,637 copying build/lib/galaxy/datatypes/converters/fasta_to_fai.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,640 copying build/lib/galaxy/datatypes/converters/interval_to_bigwig_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,642 copying build/lib/galaxy/datatypes/converters/fastq_to_fqtoc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,644 copying build/lib/galaxy/datatypes/converters/pbed_to_lped_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,646 copying build/lib/galaxy/datatypes/converters/tar_to_directory.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,648 copying build/lib/galaxy/datatypes/converters/len_to_linecount.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,650 copying build/lib/galaxy/datatypes/converters/fasta_to_len.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,653 copying build/lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,655 copying build/lib/galaxy/datatypes/converters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,657 copying build/lib/galaxy/datatypes/converters/bed_to_fli_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,659 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,661 copying build/lib/galaxy/datatypes/converters/mdconvert.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,664 copying build/lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,666 copying build/lib/galaxy/datatypes/converters/pdb_to_gro.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,668 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,670 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,673 copying build/lib/galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,675 copying build/lib/galaxy/datatypes/converters/to_qname_sorted_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,677 copying build/lib/galaxy/datatypes/converters/archive_to_directory.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,680 copying build/lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,682 copying build/lib/galaxy/datatypes/converters/tabular_csv.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,684 copying build/lib/galaxy/datatypes/converters/parquet_to_csv_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,686 copying build/lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,689 copying build/lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,691 copying build/lib/galaxy/datatypes/converters/mol2_to_mol_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,693 copying build/lib/galaxy/datatypes/converters/bigbed_to_bed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,695 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,697 copying build/lib/galaxy/datatypes/converters/bz2_to_uncompressed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,700 copying build/lib/galaxy/datatypes/converters/interval_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,702 copying build/lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,704 copying build/lib/galaxy/datatypes/converters/maf_to_fasta_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,706 copying build/lib/galaxy/datatypes/converters/lped_to_fped_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,708 copying build/lib/galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,710 copying build/lib/galaxy/datatypes/converters/maf_to_interval_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,712 copying build/lib/galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/converters 2025-12-17T14:19:10,714 copying build/lib/galaxy/datatypes/sniff.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,717 copying build/lib/galaxy/datatypes/graph.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,720 copying build/lib/galaxy/datatypes/checkers.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,723 copying build/lib/galaxy/datatypes/coverage.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,725 copying build/lib/galaxy/datatypes/isa.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,728 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications 2025-12-17T14:19:10,730 copying build/lib/galaxy/datatypes/display_applications/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-17T14:19:10,732 copying build/lib/galaxy/datatypes/display_applications/parameters.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-17T14:19:10,735 copying build/lib/galaxy/datatypes/display_applications/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-17T14:19:10,738 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/xsd 2025-12-17T14:19:10,739 copying build/lib/galaxy/datatypes/display_applications/xsd/geda.xsd -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/xsd 2025-12-17T14:19:10,743 copying build/lib/galaxy/datatypes/display_applications/application.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications 2025-12-17T14:19:10,746 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs 2025-12-17T14:19:10,748 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/minerva 2025-12-17T14:19:10,750 copying build/lib/galaxy/datatypes/display_applications/configs/minerva/tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/minerva 2025-12-17T14:19:10,753 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:10,754 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:10,757 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:10,759 copying build/lib/galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/gbrowse 2025-12-17T14:19:10,762 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,763 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,765 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,767 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,770 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,772 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,775 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,777 copying build/lib/galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ucsc 2025-12-17T14:19:10,779 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/image 2025-12-17T14:19:10,780 copying build/lib/galaxy/datatypes/display_applications/configs/image/avivator.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/image 2025-12-17T14:19:10,783 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:10,784 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:10,786 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:10,788 copying build/lib/galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/ensembl 2025-12-17T14:19:10,791 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/intermine 2025-12-17T14:19:10,792 copying build/lib/galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/intermine 2025-12-17T14:19:10,795 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,796 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,798 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,800 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,802 copying build/lib/galaxy/datatypes/display_applications/configs/igb/wig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,804 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,806 copying build/lib/galaxy/datatypes/display_applications/configs/igb/gtf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,808 copying build/lib/galaxy/datatypes/display_applications/configs/igb/cram.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,809 copying build/lib/galaxy/datatypes/display_applications/configs/igb/bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igb 2025-12-17T14:19:10,812 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/biom 2025-12-17T14:19:10,813 copying build/lib/galaxy/datatypes/display_applications/configs/biom/biom_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/biom 2025-12-17T14:19:10,816 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/icn3d 2025-12-17T14:19:10,817 copying build/lib/galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/icn3d 2025-12-17T14:19:10,819 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/iobio 2025-12-17T14:19:10,820 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/iobio 2025-12-17T14:19:10,822 copying build/lib/galaxy/datatypes/display_applications/configs/iobio/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/iobio 2025-12-17T14:19:10,825 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/rviewer 2025-12-17T14:19:10,826 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/rviewer 2025-12-17T14:19:10,828 copying build/lib/galaxy/datatypes/display_applications/configs/rviewer/bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/rviewer 2025-12-17T14:19:10,830 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime 2025-12-17T14:19:10,832 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-17T14:19:10,833 copying build/lib/galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/qiime/qiime2 2025-12-17T14:19:10,836 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,837 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,840 copying build/lib/galaxy/datatypes/display_applications/configs/igv/bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,842 copying build/lib/galaxy/datatypes/display_applications/configs/igv/vcf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,844 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,846 copying build/lib/galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,849 copying build/lib/galaxy/datatypes/display_applications/configs/igv/gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,851 copying build/lib/galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/display_applications/configs/igv 2025-12-17T14:19:10,853 copying build/lib/galaxy/datatypes/neo4j.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,856 copying build/lib/galaxy/datatypes/data.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,859 copying build/lib/galaxy/datatypes/tracks.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,861 copying build/lib/galaxy/datatypes/set_metadata_tool.xml -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,863 copying build/lib/galaxy/datatypes/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,865 copying build/lib/galaxy/datatypes/gis.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,867 copying build/lib/galaxy/datatypes/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,870 copying build/lib/galaxy/datatypes/genetics.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,873 copying build/lib/galaxy/datatypes/tabular.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,876 copying build/lib/galaxy/datatypes/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,880 copying build/lib/galaxy/datatypes/speech.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,882 copying build/lib/galaxy/datatypes/metacyto.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,884 copying build/lib/galaxy/datatypes/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,886 copying build/lib/galaxy/datatypes/qualityscore.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,888 copying build/lib/galaxy/datatypes/molecules.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,891 copying build/lib/galaxy/datatypes/qiime2.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,894 copying build/lib/galaxy/datatypes/microarrays.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,896 copying build/lib/galaxy/datatypes/mothur.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,899 copying build/lib/galaxy/datatypes/hdf5.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,901 copying build/lib/galaxy/datatypes/assembly.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,903 copying build/lib/galaxy/datatypes/chain.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,906 copying build/lib/galaxy/datatypes/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,909 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/util 2025-12-17T14:19:10,910 copying build/lib/galaxy/datatypes/util/generic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-17T14:19:10,912 copying build/lib/galaxy/datatypes/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-17T14:19:10,914 copying build/lib/galaxy/datatypes/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-17T14:19:10,917 copying build/lib/galaxy/datatypes/util/gff_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/util 2025-12-17T14:19:10,920 copying build/lib/galaxy/datatypes/constructive_solid_geometry.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,923 copying build/lib/galaxy/datatypes/phylip.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,926 copying build/lib/galaxy/datatypes/media.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,928 copying build/lib/galaxy/datatypes/triples.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,931 copying build/lib/galaxy/datatypes/interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,934 copying build/lib/galaxy/datatypes/proteomics.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,937 copying build/lib/galaxy/datatypes/sequence.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,941 creating build/bdist.linux-armv7l/wheel/galaxy/datatypes/dataproviders 2025-12-17T14:19:10,942 copying build/lib/galaxy/datatypes/dataproviders/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,944 copying build/lib/galaxy/datatypes/dataproviders/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,946 copying build/lib/galaxy/datatypes/dataproviders/hierarchy.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,949 copying build/lib/galaxy/datatypes/dataproviders/dataset.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,951 copying build/lib/galaxy/datatypes/dataproviders/column.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,954 copying build/lib/galaxy/datatypes/dataproviders/chunk.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,956 copying build/lib/galaxy/datatypes/dataproviders/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,958 copying build/lib/galaxy/datatypes/dataproviders/decorators.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,961 copying build/lib/galaxy/datatypes/dataproviders/line.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,964 copying build/lib/galaxy/datatypes/dataproviders/exceptions.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes/dataproviders 2025-12-17T14:19:10,967 copying build/lib/galaxy/datatypes/binary.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,974 copying build/lib/galaxy/datatypes/protocols.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,976 copying build/lib/galaxy/datatypes/images.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,980 copying build/lib/galaxy/datatypes/spaln.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,984 copying build/lib/galaxy/datatypes/ngsindex.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,986 copying build/lib/galaxy/datatypes/annotation.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,989 copying build/lib/galaxy/datatypes/plant_tribes.py -> build/bdist.linux-armv7l/wheel/./galaxy/datatypes 2025-12-17T14:19:10,993 creating build/bdist.linux-armv7l/wheel/galaxy/quota 2025-12-17T14:19:10,994 copying build/lib/galaxy/quota/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/quota 2025-12-17T14:19:10,998 copying build/lib/galaxy/quota/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/quota 2025-12-17T14:19:11,001 copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy 2025-12-17T14:19:11,004 creating build/bdist.linux-armv7l/wheel/galaxy/security 2025-12-17T14:19:11,006 copying build/lib/galaxy/security/passwords.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-17T14:19:11,009 copying build/lib/galaxy/security/validate_user_input.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-17T14:19:11,012 copying build/lib/galaxy/security/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-17T14:19:11,015 copying build/lib/galaxy/security/ssh_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-17T14:19:11,018 copying build/lib/galaxy/security/object_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-17T14:19:11,021 copying build/lib/galaxy/security/vault.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-17T14:19:11,025 copying build/lib/galaxy/security/idencoding.py -> build/bdist.linux-armv7l/wheel/./galaxy/security 2025-12-17T14:19:11,029 running install_egg_info 2025-12-17T14:19:11,048 Copying galaxy_data.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_data-25.1.0-py3.11.egg-info 2025-12-17T14:19:11,066 running install_scripts 2025-12-17T14:19:11,080 creating build/bdist.linux-armv7l/wheel/galaxy_data-25.1.0.dist-info/WHEEL 2025-12-17T14:19:11,083 creating '/tmp/pip-wheel-eiis3jtb/.tmp-e1ycr7en/galaxy_data-25.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-17T14:19:11,085 adding 'galaxy/__init__.py' 2025-12-17T14:19:11,087 adding 'galaxy/py.typed' 2025-12-17T14:19:11,090 adding 'galaxy/datatypes/__init__.py' 2025-12-17T14:19:11,092 adding 'galaxy/datatypes/_schema.py' 2025-12-17T14:19:11,094 adding 'galaxy/datatypes/annotation.py' 2025-12-17T14:19:11,096 adding 'galaxy/datatypes/anvio.py' 2025-12-17T14:19:11,098 adding 'galaxy/datatypes/assembly.py' 2025-12-17T14:19:11,115 adding 'galaxy/datatypes/binary.py' 2025-12-17T14:19:11,118 adding 'galaxy/datatypes/blast.py' 2025-12-17T14:19:11,120 adding 'galaxy/datatypes/chain.py' 2025-12-17T14:19:11,122 adding 'galaxy/datatypes/checkers.py' 2025-12-17T14:19:11,124 adding 'galaxy/datatypes/chrominfo.py' 2025-12-17T14:19:11,128 adding 'galaxy/datatypes/constructive_solid_geometry.py' 2025-12-17T14:19:11,130 adding 'galaxy/datatypes/coverage.py' 2025-12-17T14:19:11,138 adding 'galaxy/datatypes/data.py' 2025-12-17T14:19:11,140 adding 'galaxy/datatypes/flow.py' 2025-12-17T14:19:11,145 adding 'galaxy/datatypes/genetics.py' 2025-12-17T14:19:11,148 adding 'galaxy/datatypes/gis.py' 2025-12-17T14:19:11,151 adding 'galaxy/datatypes/goldenpath.py' 2025-12-17T14:19:11,153 adding 'galaxy/datatypes/graph.py' 2025-12-17T14:19:11,154 adding 'galaxy/datatypes/hdf5.py' 2025-12-17T14:19:11,157 adding 'galaxy/datatypes/images.py' 2025-12-17T14:19:11,165 adding 'galaxy/datatypes/interval.py' 2025-12-17T14:19:11,167 adding 'galaxy/datatypes/isa.py' 2025-12-17T14:19:11,169 adding 'galaxy/datatypes/larch.py' 2025-12-17T14:19:11,171 adding 'galaxy/datatypes/media.py' 2025-12-17T14:19:11,172 adding 'galaxy/datatypes/metacyto.py' 2025-12-17T14:19:11,173 adding 'galaxy/datatypes/metadata.py' 2025-12-17T14:19:11,175 adding 'galaxy/datatypes/microarrays.py' 2025-12-17T14:19:11,180 adding 'galaxy/datatypes/molecules.py' 2025-12-17T14:19:11,183 adding 'galaxy/datatypes/mothur.py' 2025-12-17T14:19:11,185 adding 'galaxy/datatypes/msa.py' 2025-12-17T14:19:11,187 adding 'galaxy/datatypes/neo4j.py' 2025-12-17T14:19:11,188 adding 'galaxy/datatypes/ngsindex.py' 2025-12-17T14:19:11,190 adding 'galaxy/datatypes/phylip.py' 2025-12-17T14:19:11,192 adding 'galaxy/datatypes/plant_tribes.py' 2025-12-17T14:19:11,195 adding 'galaxy/datatypes/proteomics.py' 2025-12-17T14:19:11,197 adding 'galaxy/datatypes/protocols.py' 2025-12-17T14:19:11,199 adding 'galaxy/datatypes/qiime2.py' 2025-12-17T14:19:11,200 adding 'galaxy/datatypes/qualityscore.py' 2025-12-17T14:19:11,206 adding 'galaxy/datatypes/registry.py' 2025-12-17T14:19:11,213 adding 'galaxy/datatypes/sequence.py' 2025-12-17T14:19:11,214 adding 'galaxy/datatypes/set_metadata_tool.xml' 2025-12-17T14:19:11,218 adding 'galaxy/datatypes/sniff.py' 2025-12-17T14:19:11,220 adding 'galaxy/datatypes/spaln.py' 2025-12-17T14:19:11,221 adding 'galaxy/datatypes/speech.py' 2025-12-17T14:19:11,230 adding 'galaxy/datatypes/tabular.py' 2025-12-17T14:19:11,235 adding 'galaxy/datatypes/text.py' 2025-12-17T14:19:11,237 adding 'galaxy/datatypes/tracks.py' 2025-12-17T14:19:11,238 adding 'galaxy/datatypes/triples.py' 2025-12-17T14:19:11,240 adding 'galaxy/datatypes/upload_util.py' 2025-12-17T14:19:11,241 adding 'galaxy/datatypes/xml.py' 2025-12-17T14:19:11,245 adding 'galaxy/datatypes/converters/__init__.py' 2025-12-17T14:19:11,246 adding 'galaxy/datatypes/converters/archive_to_directory.xml' 2025-12-17T14:19:11,247 adding 'galaxy/datatypes/converters/bam_to_bai.xml' 2025-12-17T14:19:11,249 adding 'galaxy/datatypes/converters/bam_to_bigwig_converter.xml' 2025-12-17T14:19:11,250 adding 'galaxy/datatypes/converters/bcf_bcf_uncompressed_converter.xml' 2025-12-17T14:19:11,251 adding 'galaxy/datatypes/converters/bed_gff_or_vcf_to_bigwig_converter.xml' 2025-12-17T14:19:11,252 adding 'galaxy/datatypes/converters/bed_to_fli_converter.xml' 2025-12-17T14:19:11,254 adding 'galaxy/datatypes/converters/bed_to_gff_converter.py' 2025-12-17T14:19:11,255 adding 'galaxy/datatypes/converters/bed_to_gff_converter.xml' 2025-12-17T14:19:11,256 adding 'galaxy/datatypes/converters/bed_to_interval_index_converter.xml' 2025-12-17T14:19:11,257 adding 'galaxy/datatypes/converters/bedgraph_to_bigwig_converter.xml' 2025-12-17T14:19:11,259 adding 'galaxy/datatypes/converters/bigbed_to_bed_converter.xml' 2025-12-17T14:19:11,260 adding 'galaxy/datatypes/converters/bigwig_to_wig_converter.xml' 2025-12-17T14:19:11,261 adding 'galaxy/datatypes/converters/biom.xml' 2025-12-17T14:19:11,262 adding 'galaxy/datatypes/converters/bz2_to_uncompressed.xml' 2025-12-17T14:19:11,264 adding 'galaxy/datatypes/converters/cml_to_smi_converter.xml' 2025-12-17T14:19:11,265 adding 'galaxy/datatypes/converters/cram_to_bam_converter.xml' 2025-12-17T14:19:11,266 adding 'galaxy/datatypes/converters/csv_to_tabular.xml' 2025-12-17T14:19:11,267 adding 'galaxy/datatypes/converters/fasta_to_2bit.xml' 2025-12-17T14:19:11,269 adding 'galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml' 2025-12-17T14:19:11,270 adding 'galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml' 2025-12-17T14:19:11,271 adding 'galaxy/datatypes/converters/fasta_to_fai.xml' 2025-12-17T14:19:11,273 adding 'galaxy/datatypes/converters/fasta_to_len.py' 2025-12-17T14:19:11,274 adding 'galaxy/datatypes/converters/fasta_to_len.xml' 2025-12-17T14:19:11,275 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.py' 2025-12-17T14:19:11,276 adding 'galaxy/datatypes/converters/fasta_to_tabular_converter.xml' 2025-12-17T14:19:11,278 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.py' 2025-12-17T14:19:11,279 adding 'galaxy/datatypes/converters/fastq_to_fqtoc.xml' 2025-12-17T14:19:11,280 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py' 2025-12-17T14:19:11,282 adding 'galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml' 2025-12-17T14:19:11,283 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py' 2025-12-17T14:19:11,284 adding 'galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml' 2025-12-17T14:19:11,285 adding 'galaxy/datatypes/converters/gff_to_bed_converter.py' 2025-12-17T14:19:11,287 adding 'galaxy/datatypes/converters/gff_to_bed_converter.xml' 2025-12-17T14:19:11,288 adding 'galaxy/datatypes/converters/gff_to_fli_converter.xml' 2025-12-17T14:19:11,289 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.py' 2025-12-17T14:19:11,290 adding 'galaxy/datatypes/converters/gff_to_interval_index_converter.xml' 2025-12-17T14:19:11,292 adding 'galaxy/datatypes/converters/gro_to_pdb.xml' 2025-12-17T14:19:11,293 adding 'galaxy/datatypes/converters/gz_to_uncompressed.xml' 2025-12-17T14:19:11,295 adding 'galaxy/datatypes/converters/inchi_to_mol_converter.xml' 2025-12-17T14:19:11,296 adding 'galaxy/datatypes/converters/interval_to_bed12_converter.xml' 2025-12-17T14:19:11,297 adding 'galaxy/datatypes/converters/interval_to_bed6_converter.xml' 2025-12-17T14:19:11,298 adding 'galaxy/datatypes/converters/interval_to_bed_converter.py' 2025-12-17T14:19:11,299 adding 'galaxy/datatypes/converters/interval_to_bed_converter.xml' 2025-12-17T14:19:11,301 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.py' 2025-12-17T14:19:11,302 adding 'galaxy/datatypes/converters/interval_to_bedstrict_converter.xml' 2025-12-17T14:19:11,303 adding 'galaxy/datatypes/converters/interval_to_bgzip_converter.xml' 2025-12-17T14:19:11,305 adding 'galaxy/datatypes/converters/interval_to_bigwig_converter.xml' 2025-12-17T14:19:11,306 adding 'galaxy/datatypes/converters/interval_to_fli.py' 2025-12-17T14:19:11,307 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.py' 2025-12-17T14:19:11,308 adding 'galaxy/datatypes/converters/interval_to_interval_index_converter.xml' 2025-12-17T14:19:11,310 adding 'galaxy/datatypes/converters/interval_to_tabix_converter.xml' 2025-12-17T14:19:11,311 adding 'galaxy/datatypes/converters/len_to_linecount.xml' 2025-12-17T14:19:11,313 adding 'galaxy/datatypes/converters/lped_to_fped_converter.py' 2025-12-17T14:19:11,314 adding 'galaxy/datatypes/converters/lped_to_fped_converter.xml' 2025-12-17T14:19:11,315 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.py' 2025-12-17T14:19:11,316 adding 'galaxy/datatypes/converters/lped_to_pbed_converter.xml' 2025-12-17T14:19:11,318 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.py' 2025-12-17T14:19:11,319 adding 'galaxy/datatypes/converters/maf_to_fasta_converter.xml' 2025-12-17T14:19:11,320 adding 'galaxy/datatypes/converters/maf_to_interval_converter.py' 2025-12-17T14:19:11,321 adding 'galaxy/datatypes/converters/maf_to_interval_converter.xml' 2025-12-17T14:19:11,322 adding 'galaxy/datatypes/converters/mdconvert.xml' 2025-12-17T14:19:11,324 adding 'galaxy/datatypes/converters/mol2_to_mol_converter.xml' 2025-12-17T14:19:11,326 adding 'galaxy/datatypes/converters/molecules_converter.xml' 2025-12-17T14:19:11,327 adding 'galaxy/datatypes/converters/neostorezip_to_neostore_converter.xml' 2025-12-17T14:19:11,328 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.py' 2025-12-17T14:19:11,330 adding 'galaxy/datatypes/converters/parquet_to_csv_converter.xml' 2025-12-17T14:19:11,331 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.py' 2025-12-17T14:19:11,332 adding 'galaxy/datatypes/converters/pbed_ldreduced_converter.xml' 2025-12-17T14:19:11,334 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.py' 2025-12-17T14:19:11,335 adding 'galaxy/datatypes/converters/pbed_to_lped_converter.xml' 2025-12-17T14:19:11,336 adding 'galaxy/datatypes/converters/pdb_to_gro.xml' 2025-12-17T14:19:11,338 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.py' 2025-12-17T14:19:11,339 adding 'galaxy/datatypes/converters/picard_interval_list_to_bed6_converter.xml' 2025-12-17T14:19:11,340 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.py' 2025-12-17T14:19:11,341 adding 'galaxy/datatypes/converters/pileup_to_interval_index_converter.xml' 2025-12-17T14:19:11,343 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.py' 2025-12-17T14:19:11,344 adding 'galaxy/datatypes/converters/ref_to_seq_taxonomy_converter.xml' 2025-12-17T14:19:11,345 adding 'galaxy/datatypes/converters/sam_to_bigwig_converter.xml' 2025-12-17T14:19:11,346 adding 'galaxy/datatypes/converters/sam_to_unsorted_bam.xml' 2025-12-17T14:19:11,348 adding 'galaxy/datatypes/converters/smi_to_mol_converter.xml' 2025-12-17T14:19:11,349 adding 'galaxy/datatypes/converters/smi_to_smi_converter.xml' 2025-12-17T14:19:11,351 adding 'galaxy/datatypes/converters/tabular_csv.py' 2025-12-17T14:19:11,352 adding 'galaxy/datatypes/converters/tabular_to_csv.xml' 2025-12-17T14:19:11,353 adding 'galaxy/datatypes/converters/tabular_to_dbnsfp.xml' 2025-12-17T14:19:11,354 adding 'galaxy/datatypes/converters/tar_to_directory.xml' 2025-12-17T14:19:11,356 adding 'galaxy/datatypes/converters/to_coordinate_sorted_bam.xml' 2025-12-17T14:19:11,357 adding 'galaxy/datatypes/converters/to_qname_sorted_bam.xml' 2025-12-17T14:19:11,358 adding 'galaxy/datatypes/converters/uncompressed_to_gz.xml' 2025-12-17T14:19:11,359 adding 'galaxy/datatypes/converters/vcf_bgzip_to_tabix_converter.xml' 2025-12-17T14:19:11,360 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.py' 2025-12-17T14:19:11,362 adding 'galaxy/datatypes/converters/vcf_to_interval_index_converter.xml' 2025-12-17T14:19:11,363 adding 'galaxy/datatypes/converters/vcf_to_vcf_bgzip_converter.xml' 2025-12-17T14:19:11,364 adding 'galaxy/datatypes/converters/wig_to_bigwig_converter.xml' 2025-12-17T14:19:11,365 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.py' 2025-12-17T14:19:11,367 adding 'galaxy/datatypes/converters/wiggle_to_simple_converter.xml' 2025-12-17T14:19:11,369 adding 'galaxy/datatypes/dataproviders/__init__.py' 2025-12-17T14:19:11,371 adding 'galaxy/datatypes/dataproviders/base.py' 2025-12-17T14:19:11,372 adding 'galaxy/datatypes/dataproviders/chunk.py' 2025-12-17T14:19:11,374 adding 'galaxy/datatypes/dataproviders/column.py' 2025-12-17T14:19:11,378 adding 'galaxy/datatypes/dataproviders/dataset.py' 2025-12-17T14:19:11,380 adding 'galaxy/datatypes/dataproviders/decorators.py' 2025-12-17T14:19:11,381 adding 'galaxy/datatypes/dataproviders/exceptions.py' 2025-12-17T14:19:11,383 adding 'galaxy/datatypes/dataproviders/external.py' 2025-12-17T14:19:11,384 adding 'galaxy/datatypes/dataproviders/hierarchy.py' 2025-12-17T14:19:11,386 adding 'galaxy/datatypes/dataproviders/line.py' 2025-12-17T14:19:11,388 adding 'galaxy/datatypes/display_applications/__init__.py' 2025-12-17T14:19:11,390 adding 'galaxy/datatypes/display_applications/application.py' 2025-12-17T14:19:11,392 adding 'galaxy/datatypes/display_applications/parameters.py' 2025-12-17T14:19:11,394 adding 'galaxy/datatypes/display_applications/util.py' 2025-12-17T14:19:11,396 adding 'galaxy/datatypes/display_applications/configs/biom/biom_simple.xml' 2025-12-17T14:19:11,398 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_bam.xml' 2025-12-17T14:19:11,399 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_gff.xml' 2025-12-17T14:19:11,401 adding 'galaxy/datatypes/display_applications/configs/ensembl/ensembl_interval_as_bed.xml' 2025-12-17T14:19:11,403 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_gff.xml' 2025-12-17T14:19:11,404 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_interval_as_bed.xml' 2025-12-17T14:19:11,405 adding 'galaxy/datatypes/display_applications/configs/gbrowse/gbrowse_wig.xml' 2025-12-17T14:19:11,407 adding 'galaxy/datatypes/display_applications/configs/icn3d/icn3d_simple.xml' 2025-12-17T14:19:11,409 adding 'galaxy/datatypes/display_applications/configs/igb/bam.xml' 2025-12-17T14:19:11,410 adding 'galaxy/datatypes/display_applications/configs/igb/bb.xml' 2025-12-17T14:19:11,411 adding 'galaxy/datatypes/display_applications/configs/igb/bed.xml' 2025-12-17T14:19:11,413 adding 'galaxy/datatypes/display_applications/configs/igb/bedgraph.xml' 2025-12-17T14:19:11,414 adding 'galaxy/datatypes/display_applications/configs/igb/bigwig.xml' 2025-12-17T14:19:11,415 adding 'galaxy/datatypes/display_applications/configs/igb/cram.xml' 2025-12-17T14:19:11,417 adding 'galaxy/datatypes/display_applications/configs/igb/gtf.xml' 2025-12-17T14:19:11,418 adding 'galaxy/datatypes/display_applications/configs/igb/wig.xml' 2025-12-17T14:19:11,420 adding 'galaxy/datatypes/display_applications/configs/igv/bam.xml' 2025-12-17T14:19:11,422 adding 'galaxy/datatypes/display_applications/configs/igv/bigwig.xml' 2025-12-17T14:19:11,423 adding 'galaxy/datatypes/display_applications/configs/igv/genbank.xml' 2025-12-17T14:19:11,425 adding 'galaxy/datatypes/display_applications/configs/igv/genome_fasta.xml' 2025-12-17T14:19:11,426 adding 'galaxy/datatypes/display_applications/configs/igv/gff.xml' 2025-12-17T14:19:11,428 adding 'galaxy/datatypes/display_applications/configs/igv/interval_as_bed.xml' 2025-12-17T14:19:11,429 adding 'galaxy/datatypes/display_applications/configs/igv/vcf.xml' 2025-12-17T14:19:11,431 adding 'galaxy/datatypes/display_applications/configs/image/avivator.xml' 2025-12-17T14:19:11,432 adding 'galaxy/datatypes/display_applications/configs/intermine/intermine_simple.xml' 2025-12-17T14:19:11,434 adding 'galaxy/datatypes/display_applications/configs/iobio/bam.xml' 2025-12-17T14:19:11,435 adding 'galaxy/datatypes/display_applications/configs/iobio/vcf.xml' 2025-12-17T14:19:11,437 adding 'galaxy/datatypes/display_applications/configs/minerva/tabular.xml' 2025-12-17T14:19:11,439 adding 'galaxy/datatypes/display_applications/configs/qiime/qiime2/q2view.xml' 2025-12-17T14:19:11,441 adding 'galaxy/datatypes/display_applications/configs/rviewer/bed.xml' 2025-12-17T14:19:11,442 adding 'galaxy/datatypes/display_applications/configs/rviewer/vcf.xml' 2025-12-17T14:19:11,444 adding 'galaxy/datatypes/display_applications/configs/ucsc/bam.xml' 2025-12-17T14:19:11,446 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigbed.xml' 2025-12-17T14:19:11,447 adding 'galaxy/datatypes/display_applications/configs/ucsc/bigwig.xml' 2025-12-17T14:19:11,448 adding 'galaxy/datatypes/display_applications/configs/ucsc/interval_as_bed.xml' 2025-12-17T14:19:11,449 adding 'galaxy/datatypes/display_applications/configs/ucsc/maf_customtrack.xml' 2025-12-17T14:19:11,451 adding 'galaxy/datatypes/display_applications/configs/ucsc/trackhub.xml' 2025-12-17T14:19:11,452 adding 'galaxy/datatypes/display_applications/configs/ucsc/vcf.xml' 2025-12-17T14:19:11,454 adding 'galaxy/datatypes/display_applications/xsd/geda.xsd' 2025-12-17T14:19:11,457 adding 'galaxy/datatypes/util/__init__.py' 2025-12-17T14:19:11,458 adding 'galaxy/datatypes/util/generic_util.py' 2025-12-17T14:19:11,461 adding 'galaxy/datatypes/util/gff_util.py' 2025-12-17T14:19:11,465 adding 'galaxy/datatypes/util/maf_utilities.py' 2025-12-17T14:19:11,519 adding 'galaxy/model/__init__.py' 2025-12-17T14:19:11,524 adding 'galaxy/model/base.py' 2025-12-17T14:19:11,526 adding 'galaxy/model/custom_types.py' 2025-12-17T14:19:11,528 adding 'galaxy/model/database_heartbeat.py' 2025-12-17T14:19:11,529 adding 'galaxy/model/database_object_names.py' 2025-12-17T14:19:11,531 adding 'galaxy/model/database_utils.py' 2025-12-17T14:19:11,533 adding 'galaxy/model/deferred.py' 2025-12-17T14:19:11,535 adding 'galaxy/model/dereference.py' 2025-12-17T14:19:11,536 adding 'galaxy/model/index_filter_util.py' 2025-12-17T14:19:11,538 adding 'galaxy/model/item_attrs.py' 2025-12-17T14:19:11,539 adding 'galaxy/model/mapping.py' 2025-12-17T14:19:11,543 adding 'galaxy/model/metadata.py' 2025-12-17T14:19:11,544 adding 'galaxy/model/none_like.py' 2025-12-17T14:19:11,545 adding 'galaxy/model/scoped_session.py' 2025-12-17T14:19:11,556 adding 'galaxy/model/security.py' 2025-12-17T14:19:11,559 adding 'galaxy/model/tags.py' 2025-12-17T14:19:11,561 adding 'galaxy/model/dataset_collections/__init__.py' 2025-12-17T14:19:11,563 adding 'galaxy/model/dataset_collections/adapters.py' 2025-12-17T14:19:11,564 adding 'galaxy/model/dataset_collections/auto_identifiers.py' 2025-12-17T14:19:11,566 adding 'galaxy/model/dataset_collections/auto_pairing.py' 2025-12-17T14:19:11,567 adding 'galaxy/model/dataset_collections/builder.py' 2025-12-17T14:19:11,569 adding 'galaxy/model/dataset_collections/matching.py' 2025-12-17T14:19:11,570 adding 'galaxy/model/dataset_collections/query.py' 2025-12-17T14:19:11,571 adding 'galaxy/model/dataset_collections/registry.py' 2025-12-17T14:19:11,573 adding 'galaxy/model/dataset_collections/rule_target_columns.py' 2025-12-17T14:19:11,574 adding 'galaxy/model/dataset_collections/rule_target_models.py' 2025-12-17T14:19:11,576 adding 'galaxy/model/dataset_collections/rule_targets.yml' 2025-12-17T14:19:11,578 adding 'galaxy/model/dataset_collections/structure.py' 2025-12-17T14:19:11,579 adding 'galaxy/model/dataset_collections/subcollections.py' 2025-12-17T14:19:11,581 adding 'galaxy/model/dataset_collections/type_description.py' 2025-12-17T14:19:11,583 adding 'galaxy/model/dataset_collections/workbook_util.py' 2025-12-17T14:19:11,584 adding 'galaxy/model/dataset_collections/types/__init__.py' 2025-12-17T14:19:11,586 adding 'galaxy/model/dataset_collections/types/list.py' 2025-12-17T14:19:11,587 adding 'galaxy/model/dataset_collections/types/paired.py' 2025-12-17T14:19:11,588 adding 'galaxy/model/dataset_collections/types/paired_or_unpaired.py' 2025-12-17T14:19:11,589 adding 'galaxy/model/dataset_collections/types/record.py' 2025-12-17T14:19:11,591 adding 'galaxy/model/dataset_collections/types/sample_sheet.py' 2025-12-17T14:19:11,592 adding 'galaxy/model/dataset_collections/types/sample_sheet_util.py' 2025-12-17T14:19:11,595 adding 'galaxy/model/dataset_collections/types/sample_sheet_workbook.py' 2025-12-17T14:19:11,597 adding 'galaxy/model/dataset_collections/types/semantics.py' 2025-12-17T14:19:11,599 adding 'galaxy/model/db/__init__.py' 2025-12-17T14:19:11,600 adding 'galaxy/model/db/library.py' 2025-12-17T14:19:11,602 adding 'galaxy/model/db/role.py' 2025-12-17T14:19:11,603 adding 'galaxy/model/db/user.py' 2025-12-17T14:19:11,605 adding 'galaxy/model/migrations/README.md' 2025-12-17T14:19:11,607 adding 'galaxy/model/migrations/__init__.py' 2025-12-17T14:19:11,608 adding 'galaxy/model/migrations/alembic.ini' 2025-12-17T14:19:11,610 adding 'galaxy/model/migrations/base.py' 2025-12-17T14:19:11,612 adding 'galaxy/model/migrations/dbscript.py' 2025-12-17T14:19:11,613 adding 'galaxy/model/migrations/exceptions.py' 2025-12-17T14:19:11,615 adding 'galaxy/model/migrations/scripts.py' 2025-12-17T14:19:11,617 adding 'galaxy/model/migrations/util.py' 2025-12-17T14:19:11,619 adding 'galaxy/model/migrations/alembic/env.py' 2025-12-17T14:19:11,620 adding 'galaxy/model/migrations/alembic/script.py.mako' 2025-12-17T14:19:11,624 adding 'galaxy/model/migrations/alembic/versions_gxy/04288b6a5b25_make_dataset_uuids_unique.py' 2025-12-17T14:19:11,625 adding 'galaxy/model/migrations/alembic/versions_gxy/0c681a59dce1_add_on_delete_to_fkey_on_event_session_.py' 2025-12-17T14:19:11,626 adding 'galaxy/model/migrations/alembic/versions_gxy/13fe10b8e35b_add_not_null_constraints_to_user_group_.py' 2025-12-17T14:19:11,628 adding 'galaxy/model/migrations/alembic/versions_gxy/186d4835587b_drop_job_state_history_update_time_.py' 2025-12-17T14:19:11,629 adding 'galaxy/model/migrations/alembic/versions_gxy/1cf595475b58_email_column_unique_constraint.py' 2025-12-17T14:19:11,630 adding 'galaxy/model/migrations/alembic/versions_gxy/1fdd615f2cdb_add_not_null_constraints_to_user_role_.py' 2025-12-17T14:19:11,632 adding 'galaxy/model/migrations/alembic/versions_gxy/23143e0bf1d8_add_doi_column_to_workflow_table.py' 2025-12-17T14:19:11,633 adding 'galaxy/model/migrations/alembic/versions_gxy/24feca8a6a5a_add_on_delete_to_fkey_on_user_action_.py' 2025-12-17T14:19:11,634 adding 'galaxy/model/migrations/alembic/versions_gxy/25b092f7938b_add_not_null_constraints_to_group_role_.py' 2025-12-17T14:19:11,635 adding 'galaxy/model/migrations/alembic/versions_gxy/2d749563e1fe_add_notification_system_tables.py' 2025-12-17T14:19:11,637 adding 'galaxy/model/migrations/alembic/versions_gxy/2dc3386d091f_add_indexes_for_workflow_comment_.py' 2025-12-17T14:19:11,638 adding 'galaxy/model/migrations/alembic/versions_gxy/303a5583a030_add_dispatched_column_to_notifications.py' 2025-12-17T14:19:11,639 adding 'galaxy/model/migrations/alembic/versions_gxy/3100452fa030_add_workflow_invocation_message_table.py' 2025-12-17T14:19:11,641 adding 'galaxy/model/migrations/alembic/versions_gxy/3356bc2ecfc4_drop_view.py' 2025-12-17T14:19:11,642 adding 'galaxy/model/migrations/alembic/versions_gxy/338d0e5deb03_add_cleanup_event_user_assoc_table.py' 2025-12-17T14:19:11,643 adding 'galaxy/model/migrations/alembic/versions_gxy/349dd9d9aac9_add_unique_constraint_to_user_role_assoc.py' 2025-12-17T14:19:11,645 adding 'galaxy/model/migrations/alembic/versions_gxy/3a2914d703ca_add_index_wf_r_s_s__workflow_invocation_.py' 2025-12-17T14:19:11,646 adding 'galaxy/model/migrations/alembic/versions_gxy/3af58c192752_implement_sample_sheets.py' 2025-12-17T14:19:11,647 adding 'galaxy/model/migrations/alembic/versions_gxy/460d0ecd1dd8_.py' 2025-12-17T14:19:11,648 adding 'galaxy/model/migrations/alembic/versions_gxy/518c8438a91b_add_when_expression_column.py' 2025-12-17T14:19:11,649 adding 'galaxy/model/migrations/alembic/versions_gxy/55f02fd8ab6c_add_index_on_hda_extension.py' 2025-12-17T14:19:11,650 adding 'galaxy/model/migrations/alembic/versions_gxy/56ddf316dbd0_add_unique_constraint_to_user_group_.py' 2025-12-17T14:19:11,652 adding 'galaxy/model/migrations/alembic/versions_gxy/570bce1e82f9_drop_cloudauthz_table.py' 2025-12-17T14:19:11,653 adding 'galaxy/model/migrations/alembic/versions_gxy/5924fbf10430_add_galaxy_url_column_to_notifications.py' 2025-12-17T14:19:11,654 adding 'galaxy/model/migrations/alembic/versions_gxy/59e024ceaca1_add_export_association_table.py' 2025-12-17T14:19:11,655 adding 'galaxy/model/migrations/alembic/versions_gxy/63dc6cca023f_add_is_webapp_column_to_worker_process.py' 2025-12-17T14:19:11,657 adding 'galaxy/model/migrations/alembic/versions_gxy/6a67bf27e6a6_deferred_data_tables.py' 2025-12-17T14:19:11,658 adding 'galaxy/model/migrations/alembic/versions_gxy/71eeb8d91f92_workflow_readme.py' 2025-12-17T14:19:11,659 adding 'galaxy/model/migrations/alembic/versions_gxy/75348cfb3715_.py' 2025-12-17T14:19:11,660 adding 'galaxy/model/migrations/alembic/versions_gxy/7ffd33d5d144_implement_structured_tool_state.py' 2025-12-17T14:19:11,662 adding 'galaxy/model/migrations/alembic/versions_gxy/81362686fd64_add_origin_column_to_landing_requests.py' 2025-12-17T14:19:11,663 adding 'galaxy/model/migrations/alembic/versions_gxy/8a19186a6ee7_add_columns_to_interactivetool_entry_point.py' 2025-12-17T14:19:11,664 adding 'galaxy/model/migrations/alembic/versions_gxy/92fb564c7095_.py' 2025-12-17T14:19:11,666 adding 'galaxy/model/migrations/alembic/versions_gxy/9540a051226e_preferred_object_store_ids.py' 2025-12-17T14:19:11,667 adding 'galaxy/model/migrations/alembic/versions_gxy/987ce9839ecb_create_celery_user_rate_limit_table.py' 2025-12-17T14:19:11,668 adding 'galaxy/model/migrations/alembic/versions_gxy/9a5207190a4d_remove_unique_constraint_from_role_name.py' 2025-12-17T14:19:11,669 adding 'galaxy/model/migrations/alembic/versions_gxy/9ef6431f3a4e_add_unique_constraint_to_group_role_.py' 2025-12-17T14:19:11,671 adding 'galaxy/model/migrations/alembic/versions_gxy/a4c3ef999ab5_add_index_on_tool_id_column_of_job_table.py' 2025-12-17T14:19:11,672 adding 'galaxy/model/migrations/alembic/versions_gxy/a91ea1d97111_update_trigger_to_use_clock_timestamp_.py' 2025-12-17T14:19:11,673 adding 'galaxy/model/migrations/alembic/versions_gxy/a99a5b52ccb8_add_workflow_source_and_workflow_source_.py' 2025-12-17T14:19:11,675 adding 'galaxy/model/migrations/alembic/versions_gxy/b182f655505f_add_workflow_source_metadata_column.py' 2025-12-17T14:19:11,676 adding 'galaxy/model/migrations/alembic/versions_gxy/b855b714e8b8_make_api_keys_deleted_non_nullable.py' 2025-12-17T14:19:11,677 adding 'galaxy/model/migrations/alembic/versions_gxy/c0959ad462b2_add_tool_id_and_tool_version_to_tool_.py' 2025-12-17T14:19:11,678 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66a_add_user_defined_object_stores.py' 2025-12-17T14:19:11,680 adding 'galaxy/model/migrations/alembic/versions_gxy/c14a3c93d66b_add_user_defined_file_sources.py' 2025-12-17T14:19:11,681 adding 'galaxy/model/migrations/alembic/versions_gxy/c39f1de47a04_add_skipped_state_to_collection_job_.py' 2025-12-17T14:19:11,682 adding 'galaxy/model/migrations/alembic/versions_gxy/c44ae5f3dcf1_merge_25_0_into_dev.py' 2025-12-17T14:19:11,684 adding 'galaxy/model/migrations/alembic/versions_gxy/c63848676caf_update_username_column_schema_and_data.py' 2025-12-17T14:19:11,685 adding 'galaxy/model/migrations/alembic/versions_gxy/c716ee82337b_replace_triggers.py' 2025-12-17T14:19:11,687 adding 'galaxy/model/migrations/alembic/versions_gxy/c8c9bd29810d_add_user_credentials_table.py' 2025-12-17T14:19:11,688 adding 'galaxy/model/migrations/alembic/versions_gxy/caa7742f7bca_add_index_wf_r_i_p__workflow_invocation_.py' 2025-12-17T14:19:11,689 adding 'galaxy/model/migrations/alembic/versions_gxy/caeee878d7cd_add_on_delete_to_fkey_on_galaxy_session_.py' 2025-12-17T14:19:11,690 adding 'galaxy/model/migrations/alembic/versions_gxy/cbc46035eba0_chat_exchange_storage.py' 2025-12-17T14:19:11,691 adding 'galaxy/model/migrations/alembic/versions_gxy/cd26484899fb_add_job_credentials_context_association_.py' 2025-12-17T14:19:11,693 adding 'galaxy/model/migrations/alembic/versions_gxy/cde5d2db77e7_add_on_delete_to_fkey_on_job_session_id.py' 2025-12-17T14:19:11,694 adding 'galaxy/model/migrations/alembic/versions_gxy/d0583094c8cd_add_quota_source_labels.py' 2025-12-17T14:19:11,695 adding 'galaxy/model/migrations/alembic/versions_gxy/d2d8f51ebb7e_merge_uuid_migration_into_dev.py' 2025-12-17T14:19:11,696 adding 'galaxy/model/migrations/alembic/versions_gxy/d619fdfa6168_username_column_unique_constraint.py' 2025-12-17T14:19:11,698 adding 'galaxy/model/migrations/alembic/versions_gxy/ddbdbc40bdc1_add_workflow_comment_table.py' 2025-12-17T14:19:11,699 adding 'galaxy/model/migrations/alembic/versions_gxy/e0561d5fc8c7_add_archived_columns_to_history.py' 2025-12-17T14:19:11,700 adding 'galaxy/model/migrations/alembic/versions_gxy/e0e3bb173ee6_add_column_deleted_to_api_keys.py' 2025-12-17T14:19:11,701 adding 'galaxy/model/migrations/alembic/versions_gxy/e382f8eb5e12_create_landing_request_association_tables.py' 2025-12-17T14:19:11,703 adding 'galaxy/model/migrations/alembic/versions_gxy/e7b6dcb09efd_create_gxy_branch.py' 2025-12-17T14:19:11,704 adding 'galaxy/model/migrations/alembic/versions_gxy/e93c5d0b47a9_alter_column_external_user_id.py' 2025-12-17T14:19:11,705 adding 'galaxy/model/migrations/alembic/versions_gxy/ec25b23b08e2_implement_fixed_length_collections.py' 2025-12-17T14:19:11,706 adding 'galaxy/model/migrations/alembic/versions_gxy/eee9229a9765_.py' 2025-12-17T14:19:11,708 adding 'galaxy/model/migrations/alembic/versions_gxy/f070559879f1_create_user_dynamic_tool_association_.py' 2025-12-17T14:19:11,709 adding 'galaxy/model/migrations/alembic/versions_gxy/fb16d09348db_dataset_source_requested_transform.py' 2025-12-17T14:19:11,711 adding 'galaxy/model/migrations/alembic/versions_tsi/d4a650f47a3c_create_tsi_branch.py' 2025-12-17T14:19:11,713 adding 'galaxy/model/migrations/data_fixes/__init__.py' 2025-12-17T14:19:11,714 adding 'galaxy/model/migrations/data_fixes/association_table_fixer.py' 2025-12-17T14:19:11,716 adding 'galaxy/model/migrations/data_fixes/user_table_fixer.py' 2025-12-17T14:19:11,718 adding 'galaxy/model/orm/__init__.py' 2025-12-17T14:19:11,719 adding 'galaxy/model/orm/engine_factory.py' 2025-12-17T14:19:11,720 adding 'galaxy/model/orm/now.py' 2025-12-17T14:19:11,722 adding 'galaxy/model/orm/scripts.py' 2025-12-17T14:19:11,723 adding 'galaxy/model/orm/util.py' 2025-12-17T14:19:11,725 adding 'galaxy/model/scripts/__init__.py' 2025-12-17T14:19:11,726 adding 'galaxy/model/scripts/delete_galaxy_sessions.py' 2025-12-17T14:19:11,728 adding 'galaxy/model/scripts/delete_job_metrics.py' 2025-12-17T14:19:11,729 adding 'galaxy/model/scripts/history_table_pruner.py' 2025-12-17T14:19:11,731 adding 'galaxy/model/scripts/prune_history_table.py' 2025-12-17T14:19:11,746 adding 'galaxy/model/store/__init__.py' 2025-12-17T14:19:11,748 adding 'galaxy/model/store/_bco_convert_utils.py' 2025-12-17T14:19:11,750 adding 'galaxy/model/store/build_objects.py' 2025-12-17T14:19:11,755 adding 'galaxy/model/store/discover.py' 2025-12-17T14:19:11,756 adding 'galaxy/model/store/load_objects.py' 2025-12-17T14:19:11,759 adding 'galaxy/model/store/ro_crate_utils.py' 2025-12-17T14:19:11,763 adding 'galaxy/model/tool_shed_install/__init__.py' 2025-12-17T14:19:11,765 adding 'galaxy/model/tool_shed_install/mapping.py' 2025-12-17T14:19:11,766 adding 'galaxy/model/triggers/__init__.py' 2025-12-17T14:19:11,768 adding 'galaxy/model/triggers/update_audit_table.py' 2025-12-17T14:19:11,769 adding 'galaxy/model/unittest_utils/__init__.py' 2025-12-17T14:19:11,770 adding 'galaxy/model/unittest_utils/beaker_testing_utils.py' 2025-12-17T14:19:11,772 adding 'galaxy/model/unittest_utils/data_app.py' 2025-12-17T14:19:11,773 adding 'galaxy/model/unittest_utils/db_helpers.py' 2025-12-17T14:19:11,774 adding 'galaxy/model/unittest_utils/migration_scripts_testing_utils.py' 2025-12-17T14:19:11,776 adding 'galaxy/model/unittest_utils/model_testing_utils.py' 2025-12-17T14:19:11,778 adding 'galaxy/model/unittest_utils/store_fixtures.py' 2025-12-17T14:19:11,779 adding 'galaxy/model/unittest_utils/utils.py' 2025-12-17T14:19:11,782 adding 'galaxy/quota/__init__.py' 2025-12-17T14:19:11,783 adding 'galaxy/quota/_schema.py' 2025-12-17T14:19:11,785 adding 'galaxy/security/__init__.py' 2025-12-17T14:19:11,787 adding 'galaxy/security/idencoding.py' 2025-12-17T14:19:11,789 adding 'galaxy/security/object_wrapper.py' 2025-12-17T14:19:11,791 adding 'galaxy/security/passwords.py' 2025-12-17T14:19:11,792 adding 'galaxy/security/ssh_util.py' 2025-12-17T14:19:11,794 adding 'galaxy/security/validate_user_input.py' 2025-12-17T14:19:11,795 adding 'galaxy/security/vault.py' 2025-12-17T14:19:11,799 adding 'galaxy_data-25.1.0.dist-info/licenses/LICENSE' 2025-12-17T14:19:11,807 adding 'galaxy_data-25.1.0.dist-info/METADATA' 2025-12-17T14:19:11,808 adding 'galaxy_data-25.1.0.dist-info/WHEEL' 2025-12-17T14:19:11,809 adding 'galaxy_data-25.1.0.dist-info/entry_points.txt' 2025-12-17T14:19:11,810 adding 'galaxy_data-25.1.0.dist-info/top_level.txt' 2025-12-17T14:19:11,817 adding 'galaxy_data-25.1.0.dist-info/RECORD' 2025-12-17T14:19:11,831 removing build/bdist.linux-armv7l/wheel 2025-12-17T14:19:12,022 Building wheel for galaxy-data (pyproject.toml): finished with status 'done' 2025-12-17T14:19:12,042 Created wheel for galaxy-data: filename=galaxy_data-25.1.0-py3-none-any.whl size=795821 sha256=db9f9be9826a4cb6ed0b101f5da76d68e3040542c53f9c143720868682fdc581 2025-12-17T14:19:12,044 Stored in directory: /tmp/pip-ephem-wheel-cache-kcy5of4o/wheels/21/4d/70/1b1cbd093804ecb5fb172d9d4cfd5688f1f6dd4243ff0fb4b6 2025-12-17T14:19:12,080 Successfully built galaxy-data 2025-12-17T14:19:12,111 Removed build tracker: '/tmp/pip-build-tracker-458_ugpk'