2025-12-17T16:26:24,053 Created temporary directory: /tmp/pip-ephem-wheel-cache-xlfy3qpk 2025-12-17T16:26:24,055 Created temporary directory: /tmp/pip-build-tracker-38sflz6r 2025-12-17T16:26:24,056 Initialized build tracking at /tmp/pip-build-tracker-38sflz6r 2025-12-17T16:26:24,056 Created build tracker: /tmp/pip-build-tracker-38sflz6r 2025-12-17T16:26:24,056 Entered build tracker: /tmp/pip-build-tracker-38sflz6r 2025-12-17T16:26:24,057 Created temporary directory: /tmp/pip-wheel-m4st5gw1 2025-12-17T16:26:24,060 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-17T16:26:24,063 Created temporary directory: /tmp/pip-ephem-wheel-cache-ua7p_2pr 2025-12-17T16:26:24,087 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-17T16:26:24,090 2 location(s) to search for versions of ga4gh-vrs: 2025-12-17T16:26:24,090 * https://pypi.org/simple/ga4gh-vrs/ 2025-12-17T16:26:24,090 * https://www.piwheels.org/simple/ga4gh-vrs/ 2025-12-17T16:26:24,091 Fetching project page and analyzing links: https://pypi.org/simple/ga4gh-vrs/ 2025-12-17T16:26:24,092 Getting page https://pypi.org/simple/ga4gh-vrs/ 2025-12-17T16:26:24,093 Found index url https://pypi.org/simple 2025-12-17T16:26:24,311 Fetched page https://pypi.org/simple/ga4gh-vrs/ as application/vnd.pypi.simple.v1+json 2025-12-17T16:26:24,335 Skipping link: No binaries permitted for ga4gh-vrs: 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https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.5-py2.py3-none-any.whl#sha256=8ad6964dbf47950a3a1fe43aca38d8521a7e4fffab39ecb1cc3ad9ce15db234c (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.8) 2025-12-17T16:26:24,634 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.5.dev0-py2.py3-none-any.whl#sha256=d25b4fd551eceaf8103a1093cb283b76e3269fc26978284a56cd501c089cf8d2 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,635 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.4-py2.py3-none-any.whl#sha256=a47500867e4ee71db7f024503dd2c1e7c1cacd9ed40996f604dbd466a2b123d4 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,635 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.4.dev0-py2.py3-none-any.whl#sha256=580df155e17de62c80087a61b34562e3c288c73174c5c53bd9355c4c5299e994 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,636 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.3-py2.py3-none-any.whl#sha256=32e9899b405b487b97fba8da2e03b7c8950f4c8d22aee6b76ebda6276dadda69 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,636 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.2-py2.py3-none-any.whl#sha256=bfe8827c053b825fd0485daaddbdf82cbb531346ea4562d017e2140709c77857 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,637 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.1-py2.py3-none-any.whl#sha256=ebbff64d1d414f51388d6b4eacb13fd82856cd99e2de3de46be5cd15625c75cd (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,637 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.1rc0-py2.py3-none-any.whl#sha256=a8ec80c45533d417be87ab6f4ae75357528879ef3f3a81221cf481e837b7cece (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,638 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.1.dev0-py2.py3-none-any.whl#sha256=1428e445bb08d7c6660aed53497675f2449cb39d8bdd72e61a1bc74a05d5acf4 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,639 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8a0-py2.py3-none-any.whl#sha256=5177887fb1f23add4b0ea7823398569dc6c4c57431466f883ba022410ed5363e (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,639 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.0.dev1-py2.py3-none-any.whl#sha256=ae4d9318d03a6b3fba6a665685ef5897a978b7a0b076d56b5cf186ba5726bc16 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,640 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.8.0.dev0-py2.py3-none-any.whl#sha256=d84edc3c4926502cadb088792273d7cdcf43567537e5f71074b4bc4e35e0ca31 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,640 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.8-py2.py3-none-any.whl#sha256=6e5f9c0d450142030491b581ecf8529aa700ceaa54f0927268792da994f3d225 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,641 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.7-py2.py3-none-any.whl#sha256=ab5352921a4cb06abcf20c0b96c1c9258c93c53417360f2def0db10649363c5a (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,641 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.6-py2.py3-none-any.whl#sha256=cdc678bb92ee79eeb7a73c19cb4d1bbcea813a6319fe804e7a1d1c23988d529d (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,642 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.5-py2.py3-none-any.whl#sha256=23c814dfdee04d6f3deb7b82e31e55cd13f78b6ec23481c237d30d13d7fb846c (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,642 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.5.dev1-py2.py3-none-any.whl#sha256=043d0499718c371c9864d4a05d870f4355b5928ba8f709351af268b25f31feee (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,643 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.5.dev0-py2.py3-none-any.whl#sha256=33cb103a2f98955e925103f16582aab135db999196fd3706d4434e630dc9af42 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,644 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.4-py2.py3-none-any.whl#sha256=930d0adc2c2a52b0a70bede66207a146a45878b6e0f131a0438024d779c768c3 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,644 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.3-py2.py3-none-any.whl#sha256=1fd24beb743e5a51a919394d858bd7e5caae5ade7db1c9df3b9bb9c356c68944 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,645 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.2-py2.py3-none-any.whl#sha256=55b8b9593024471a8108529ebad9f842835559c01e14bfd377660914d0e39dd2 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,645 Skipping link: No binaries permitted for ga4gh-vrs: https://archive1.piwheels.org/simple/ga4gh-vrs/ga4gh.vrs-0.7.1-py2.py3-none-any.whl#sha256=4eed3cebd00ce9d03f8284a183cf5eb25b298f72dd285c77e64f3c336c702438 (from https://www.piwheels.org/simple/ga4gh-vrs/) (requires-python:>=3.6) 2025-12-17T16:26:24,646 Skipping link: not a file: https://www.piwheels.org/simple/ga4gh-vrs/ 2025-12-17T16:26:24,647 Skipping link: not a file: https://pypi.org/simple/ga4gh-vrs/ 2025-12-17T16:26:24,670 Given no hashes to check 1 links for project 'ga4gh-vrs': discarding no candidates 2025-12-17T16:26:24,688 Collecting ga4gh-vrs==2.2.0 2025-12-17T16:26:24,690 Created temporary directory: /tmp/pip-unpack-nijsampp 2025-12-17T16:26:24,903 Downloading ga4gh_vrs-2.2.0.tar.gz (16.6 MB) 2025-12-17T16:26:27,526 Added ga4gh-vrs==2.2.0 from https://files.pythonhosted.org/packages/ec/b9/ddcaca341d2488b33ae882cbd52abd4a97a855cef1cb42b45340a1747473/ga4gh_vrs-2.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-38sflz6r' 2025-12-17T16:26:27,535 Created temporary directory: /tmp/pip-build-env-juk2pj1o 2025-12-17T16:26:27,539 Installing build dependencies: started 2025-12-17T16:26:27,543 Running command pip subprocess to install build dependencies 2025-12-17T16:26:28,677 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-17T16:26:29,283 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-17T16:26:29,306 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-17T16:26:31,004 Collecting setuptools>=65.3 2025-12-17T16:26:31,117 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-17T16:26:31,491 Collecting setuptools_scm>=8 2025-12-17T16:26:31,507 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2025-12-17T16:26:31,692 Collecting packaging>=20 2025-12-17T16:26:31,709 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-17T16:26:34,637 Installing collected packages: setuptools, packaging, setuptools_scm 2025-12-17T16:26:38,600 Creating /tmp/pip-build-env-juk2pj1o/overlay/local/bin 2025-12-17T16:26:38,602 changing mode of /tmp/pip-build-env-juk2pj1o/overlay/local/bin/setuptools-scm to 755 2025-12-17T16:26:38,625 Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2 2025-12-17T16:26:38,906 Installing build dependencies: finished with status 'done' 2025-12-17T16:26:38,912 Getting requirements to build wheel: started 2025-12-17T16:26:38,914 Running command Getting requirements to build wheel 2025-12-17T16:26:39,641 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-17T16:26:39,641 !! 2025-12-17T16:26:39,642 ******************************************************************************** 2025-12-17T16:26:39,643 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-17T16:26:39,644 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-17T16:26:39,644 or your builds will no longer be supported. 2025-12-17T16:26:39,646 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:39,646 ******************************************************************************** 2025-12-17T16:26:39,648 !! 2025-12-17T16:26:39,649 corresp(dist, value, root_dir) 2025-12-17T16:26:39,731 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T16:26:39,731 !! 2025-12-17T16:26:39,732 ******************************************************************************** 2025-12-17T16:26:39,733 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T16:26:39,734 License :: OSI Approved :: Apache Software License 2025-12-17T16:26:39,734 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:39,735 ******************************************************************************** 2025-12-17T16:26:39,736 !! 2025-12-17T16:26:39,736 dist._finalize_license_expression() 2025-12-17T16:26:39,737 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T16:26:39,737 !! 2025-12-17T16:26:39,738 ******************************************************************************** 2025-12-17T16:26:39,739 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T16:26:39,740 License :: OSI Approved :: Apache Software License 2025-12-17T16:26:39,741 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:39,742 ******************************************************************************** 2025-12-17T16:26:39,743 !! 2025-12-17T16:26:39,743 self._finalize_license_expression() 2025-12-17T16:26:39,744 running egg_info 2025-12-17T16:26:39,753 writing src/ga4gh.vrs.egg-info/PKG-INFO 2025-12-17T16:26:39,764 writing dependency_links to src/ga4gh.vrs.egg-info/dependency_links.txt 2025-12-17T16:26:39,766 writing entry points to src/ga4gh.vrs.egg-info/entry_points.txt 2025-12-17T16:26:39,772 writing requirements to src/ga4gh.vrs.egg-info/requires.txt 2025-12-17T16:26:39,773 writing top-level names to src/ga4gh.vrs.egg-info/top_level.txt 2025-12-17T16:26:39,827 listing git files failed - pretending there aren't any 2025-12-17T16:26:39,832 reading manifest file 'src/ga4gh.vrs.egg-info/SOURCES.txt' 2025-12-17T16:26:40,042 adding license file 'LICENSE' 2025-12-17T16:26:40,220 writing manifest file 'src/ga4gh.vrs.egg-info/SOURCES.txt' 2025-12-17T16:26:40,322 Getting requirements to build wheel: finished with status 'done' 2025-12-17T16:26:40,326 Created temporary directory: /tmp/pip-modern-metadata-uual0onb 2025-12-17T16:26:40,328 Preparing metadata (pyproject.toml): started 2025-12-17T16:26:40,329 Running command Preparing metadata (pyproject.toml) 2025-12-17T16:26:40,990 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-17T16:26:40,990 !! 2025-12-17T16:26:40,991 ******************************************************************************** 2025-12-17T16:26:40,992 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-17T16:26:40,993 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-17T16:26:40,993 or your builds will no longer be supported. 2025-12-17T16:26:40,995 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:40,995 ******************************************************************************** 2025-12-17T16:26:40,996 !! 2025-12-17T16:26:40,997 corresp(dist, value, root_dir) 2025-12-17T16:26:41,077 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T16:26:41,077 !! 2025-12-17T16:26:41,078 ******************************************************************************** 2025-12-17T16:26:41,079 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T16:26:41,080 License :: OSI Approved :: Apache Software License 2025-12-17T16:26:41,081 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:41,081 ******************************************************************************** 2025-12-17T16:26:41,082 !! 2025-12-17T16:26:41,082 dist._finalize_license_expression() 2025-12-17T16:26:41,084 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T16:26:41,084 !! 2025-12-17T16:26:41,085 ******************************************************************************** 2025-12-17T16:26:41,086 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T16:26:41,086 License :: OSI Approved :: Apache Software License 2025-12-17T16:26:41,087 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:41,088 ******************************************************************************** 2025-12-17T16:26:41,089 !! 2025-12-17T16:26:41,089 self._finalize_license_expression() 2025-12-17T16:26:41,092 running dist_info 2025-12-17T16:26:41,106 creating /tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info 2025-12-17T16:26:41,107 writing /tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/PKG-INFO 2025-12-17T16:26:41,119 writing dependency_links to /tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/dependency_links.txt 2025-12-17T16:26:41,121 writing entry points to /tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/entry_points.txt 2025-12-17T16:26:41,126 writing requirements to /tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/requires.txt 2025-12-17T16:26:41,127 writing top-level names to /tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/top_level.txt 2025-12-17T16:26:41,129 writing manifest file '/tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/SOURCES.txt' 2025-12-17T16:26:41,178 listing git files failed - pretending there aren't any 2025-12-17T16:26:41,183 reading manifest file '/tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/SOURCES.txt' 2025-12-17T16:26:41,185 adding license file 'LICENSE' 2025-12-17T16:26:41,188 writing manifest file '/tmp/pip-modern-metadata-uual0onb/ga4gh.vrs.egg-info/SOURCES.txt' 2025-12-17T16:26:41,189 creating '/tmp/pip-modern-metadata-uual0onb/ga4gh_vrs-2.2.0.dist-info' 2025-12-17T16:26:41,322 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-17T16:26:41,330 Source in /tmp/pip-wheel-m4st5gw1/ga4gh-vrs_8bb362758a5140d2b4e8ee752716aedc has version 2.2.0, which satisfies requirement ga4gh-vrs==2.2.0 from https://files.pythonhosted.org/packages/ec/b9/ddcaca341d2488b33ae882cbd52abd4a97a855cef1cb42b45340a1747473/ga4gh_vrs-2.2.0.tar.gz 2025-12-17T16:26:41,331 Removed ga4gh-vrs==2.2.0 from https://files.pythonhosted.org/packages/ec/b9/ddcaca341d2488b33ae882cbd52abd4a97a855cef1cb42b45340a1747473/ga4gh_vrs-2.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-38sflz6r' 2025-12-17T16:26:41,343 Created temporary directory: /tmp/pip-unpack-dp1dimg8 2025-12-17T16:26:41,343 Building wheels for collected packages: ga4gh-vrs 2025-12-17T16:26:41,348 Created temporary directory: /tmp/pip-wheel-n81zttxi 2025-12-17T16:26:41,348 Destination directory: /tmp/pip-wheel-n81zttxi 2025-12-17T16:26:41,351 Building wheel for ga4gh-vrs (pyproject.toml): started 2025-12-17T16:26:41,352 Running command Building wheel for ga4gh-vrs (pyproject.toml) 2025-12-17T16:26:42,001 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-17T16:26:42,002 !! 2025-12-17T16:26:42,003 ******************************************************************************** 2025-12-17T16:26:42,003 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-17T16:26:42,004 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-17T16:26:42,005 or your builds will no longer be supported. 2025-12-17T16:26:42,005 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:42,006 ******************************************************************************** 2025-12-17T16:26:42,007 !! 2025-12-17T16:26:42,007 corresp(dist, value, root_dir) 2025-12-17T16:26:42,083 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T16:26:42,083 !! 2025-12-17T16:26:42,084 ******************************************************************************** 2025-12-17T16:26:42,085 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T16:26:42,086 License :: OSI Approved :: Apache Software License 2025-12-17T16:26:42,087 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:42,087 ******************************************************************************** 2025-12-17T16:26:42,088 !! 2025-12-17T16:26:42,089 dist._finalize_license_expression() 2025-12-17T16:26:42,090 /tmp/pip-build-env-juk2pj1o/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-17T16:26:42,091 !! 2025-12-17T16:26:42,092 ******************************************************************************** 2025-12-17T16:26:42,093 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-17T16:26:42,094 License :: OSI Approved :: Apache Software License 2025-12-17T16:26:42,095 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-17T16:26:42,095 ******************************************************************************** 2025-12-17T16:26:42,096 !! 2025-12-17T16:26:42,097 self._finalize_license_expression() 2025-12-17T16:26:42,098 running bdist_wheel 2025-12-17T16:26:42,119 running build 2025-12-17T16:26:42,120 running build_py 2025-12-17T16:26:42,128 creating build/lib/ga4gh/vrs 2025-12-17T16:26:42,131 copying src/ga4gh/vrs/dataproxy.py -> build/lib/ga4gh/vrs 2025-12-17T16:26:42,133 copying src/ga4gh/vrs/__init__.py -> build/lib/ga4gh/vrs 2025-12-17T16:26:42,135 copying src/ga4gh/vrs/normalize.py -> build/lib/ga4gh/vrs 2025-12-17T16:26:42,138 copying src/ga4gh/vrs/models.py -> build/lib/ga4gh/vrs 2025-12-17T16:26:42,141 copying src/ga4gh/vrs/enderef.py -> build/lib/ga4gh/vrs 2025-12-17T16:26:42,143 creating build/lib/ga4gh/core 2025-12-17T16:26:42,144 copying src/ga4gh/core/pydantic.py -> build/lib/ga4gh/core 2025-12-17T16:26:42,146 copying src/ga4gh/core/identifiers.py -> build/lib/ga4gh/core 2025-12-17T16:26:42,148 copying src/ga4gh/core/digests.py -> build/lib/ga4gh/core 2025-12-17T16:26:42,150 copying src/ga4gh/core/__init__.py -> build/lib/ga4gh/core 2025-12-17T16:26:42,152 copying src/ga4gh/core/models.py -> build/lib/ga4gh/core 2025-12-17T16:26:42,154 copying src/ga4gh/core/enderef.py -> build/lib/ga4gh/core 2025-12-17T16:26:42,156 creating build/lib/ga4gh/vrs/utils 2025-12-17T16:26:42,157 copying src/ga4gh/vrs/utils/__init__.py -> build/lib/ga4gh/vrs/utils 2025-12-17T16:26:42,159 copying src/ga4gh/vrs/utils/hgvs_tools.py -> build/lib/ga4gh/vrs/utils 2025-12-17T16:26:42,162 creating build/lib/ga4gh/vrs/extras 2025-12-17T16:26:42,163 copying src/ga4gh/vrs/extras/object_store.py -> build/lib/ga4gh/vrs/extras 2025-12-17T16:26:42,165 copying src/ga4gh/vrs/extras/translator.py -> build/lib/ga4gh/vrs/extras 2025-12-17T16:26:42,167 copying src/ga4gh/vrs/extras/__init__.py -> build/lib/ga4gh/vrs/extras 2025-12-17T16:26:42,169 copying src/ga4gh/vrs/extras/decorators.py -> build/lib/ga4gh/vrs/extras 2025-12-17T16:26:42,171 creating build/lib/ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,172 copying src/ga4gh/vrs/extras/annotator/vcf.py -> build/lib/ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,175 copying src/ga4gh/vrs/extras/annotator/__init__.py -> build/lib/ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,176 copying src/ga4gh/vrs/extras/annotator/cli.py -> build/lib/ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,178 running egg_info 2025-12-17T16:26:42,192 writing src/ga4gh.vrs.egg-info/PKG-INFO 2025-12-17T16:26:42,203 writing dependency_links to src/ga4gh.vrs.egg-info/dependency_links.txt 2025-12-17T16:26:42,205 writing entry points to src/ga4gh.vrs.egg-info/entry_points.txt 2025-12-17T16:26:42,210 writing requirements to src/ga4gh.vrs.egg-info/requires.txt 2025-12-17T16:26:42,211 writing top-level names to src/ga4gh.vrs.egg-info/top_level.txt 2025-12-17T16:26:42,247 listing git files failed - pretending there aren't any 2025-12-17T16:26:42,251 reading manifest file 'src/ga4gh.vrs.egg-info/SOURCES.txt' 2025-12-17T16:26:42,346 adding license file 'LICENSE' 2025-12-17T16:26:42,353 writing manifest file 'src/ga4gh.vrs.egg-info/SOURCES.txt' 2025-12-17T16:26:42,375 installing to build/bdist.linux-armv7l/wheel 2025-12-17T16:26:42,376 running install 2025-12-17T16:26:42,399 running install_lib 2025-12-17T16:26:42,406 creating build/bdist.linux-armv7l/wheel 2025-12-17T16:26:42,408 creating build/bdist.linux-armv7l/wheel/ga4gh 2025-12-17T16:26:42,410 creating build/bdist.linux-armv7l/wheel/ga4gh/vrs 2025-12-17T16:26:42,411 copying build/lib/ga4gh/vrs/dataproxy.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs 2025-12-17T16:26:42,414 copying build/lib/ga4gh/vrs/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs 2025-12-17T16:26:42,416 copying build/lib/ga4gh/vrs/normalize.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs 2025-12-17T16:26:42,418 copying build/lib/ga4gh/vrs/models.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs 2025-12-17T16:26:42,421 creating build/bdist.linux-armv7l/wheel/ga4gh/vrs/utils 2025-12-17T16:26:42,422 copying build/lib/ga4gh/vrs/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/utils 2025-12-17T16:26:42,424 copying build/lib/ga4gh/vrs/utils/hgvs_tools.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/utils 2025-12-17T16:26:42,426 copying build/lib/ga4gh/vrs/enderef.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs 2025-12-17T16:26:42,429 creating build/bdist.linux-armv7l/wheel/ga4gh/vrs/extras 2025-12-17T16:26:42,430 copying build/lib/ga4gh/vrs/extras/object_store.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/extras 2025-12-17T16:26:42,432 copying build/lib/ga4gh/vrs/extras/translator.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/extras 2025-12-17T16:26:42,434 copying build/lib/ga4gh/vrs/extras/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/extras 2025-12-17T16:26:42,436 copying build/lib/ga4gh/vrs/extras/decorators.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/extras 2025-12-17T16:26:42,438 creating build/bdist.linux-armv7l/wheel/ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,439 copying build/lib/ga4gh/vrs/extras/annotator/vcf.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,442 copying build/lib/ga4gh/vrs/extras/annotator/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,444 copying build/lib/ga4gh/vrs/extras/annotator/cli.py -> build/bdist.linux-armv7l/wheel/./ga4gh/vrs/extras/annotator 2025-12-17T16:26:42,447 creating build/bdist.linux-armv7l/wheel/ga4gh/core 2025-12-17T16:26:42,448 copying build/lib/ga4gh/core/pydantic.py -> build/bdist.linux-armv7l/wheel/./ga4gh/core 2025-12-17T16:26:42,450 copying build/lib/ga4gh/core/identifiers.py -> build/bdist.linux-armv7l/wheel/./ga4gh/core 2025-12-17T16:26:42,452 copying build/lib/ga4gh/core/digests.py -> build/bdist.linux-armv7l/wheel/./ga4gh/core 2025-12-17T16:26:42,453 copying build/lib/ga4gh/core/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/core 2025-12-17T16:26:42,455 copying build/lib/ga4gh/core/models.py -> build/bdist.linux-armv7l/wheel/./ga4gh/core 2025-12-17T16:26:42,457 copying build/lib/ga4gh/core/enderef.py -> build/bdist.linux-armv7l/wheel/./ga4gh/core 2025-12-17T16:26:42,459 running install_egg_info 2025-12-17T16:26:42,466 Copying src/ga4gh.vrs.egg-info to build/bdist.linux-armv7l/wheel/./ga4gh.vrs-2.2.0-py3.11.egg-info 2025-12-17T16:26:42,477 running install_scripts 2025-12-17T16:26:42,489 creating build/bdist.linux-armv7l/wheel/ga4gh_vrs-2.2.0.dist-info/WHEEL 2025-12-17T16:26:42,492 creating '/tmp/pip-wheel-n81zttxi/.tmp-y0q15ldm/ga4gh_vrs-2.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-17T16:26:42,494 adding 'ga4gh/core/__init__.py' 2025-12-17T16:26:42,495 adding 'ga4gh/core/digests.py' 2025-12-17T16:26:42,497 adding 'ga4gh/core/enderef.py' 2025-12-17T16:26:42,499 adding 'ga4gh/core/identifiers.py' 2025-12-17T16:26:42,500 adding 'ga4gh/core/models.py' 2025-12-17T16:26:42,502 adding 'ga4gh/core/pydantic.py' 2025-12-17T16:26:42,504 adding 'ga4gh/vrs/__init__.py' 2025-12-17T16:26:42,506 adding 'ga4gh/vrs/dataproxy.py' 2025-12-17T16:26:42,507 adding 'ga4gh/vrs/enderef.py' 2025-12-17T16:26:42,511 adding 'ga4gh/vrs/models.py' 2025-12-17T16:26:42,513 adding 'ga4gh/vrs/normalize.py' 2025-12-17T16:26:42,515 adding 'ga4gh/vrs/extras/__init__.py' 2025-12-17T16:26:42,516 adding 'ga4gh/vrs/extras/decorators.py' 2025-12-17T16:26:42,518 adding 'ga4gh/vrs/extras/object_store.py' 2025-12-17T16:26:42,520 adding 'ga4gh/vrs/extras/translator.py' 2025-12-17T16:26:42,522 adding 'ga4gh/vrs/extras/annotator/__init__.py' 2025-12-17T16:26:42,524 adding 'ga4gh/vrs/extras/annotator/cli.py' 2025-12-17T16:26:42,527 adding 'ga4gh/vrs/extras/annotator/vcf.py' 2025-12-17T16:26:42,528 adding 'ga4gh/vrs/utils/__init__.py' 2025-12-17T16:26:42,530 adding 'ga4gh/vrs/utils/hgvs_tools.py' 2025-12-17T16:26:42,534 adding 'ga4gh_vrs-2.2.0.dist-info/licenses/LICENSE' 2025-12-17T16:26:42,538 adding 'ga4gh_vrs-2.2.0.dist-info/METADATA' 2025-12-17T16:26:42,539 adding 'ga4gh_vrs-2.2.0.dist-info/WHEEL' 2025-12-17T16:26:42,540 adding 'ga4gh_vrs-2.2.0.dist-info/entry_points.txt' 2025-12-17T16:26:42,541 adding 'ga4gh_vrs-2.2.0.dist-info/top_level.txt' 2025-12-17T16:26:42,542 adding 'ga4gh_vrs-2.2.0.dist-info/RECORD' 2025-12-17T16:26:42,544 removing build/bdist.linux-armv7l/wheel 2025-12-17T16:26:42,655 Building wheel for ga4gh-vrs (pyproject.toml): finished with status 'done' 2025-12-17T16:26:42,661 Created wheel for ga4gh-vrs: filename=ga4gh_vrs-2.2.0-py3-none-any.whl size=63165 sha256=75c34098709aa96ae363858d874a4b4d23a8821b90681e48141c774593a78020 2025-12-17T16:26:42,662 Stored in directory: /tmp/pip-ephem-wheel-cache-ua7p_2pr/wheels/96/65/24/3c6b4df011750533be0065d47cff33c5f23ea1cb2d41ad5bf0 2025-12-17T16:26:42,683 Successfully built ga4gh-vrs 2025-12-17T16:26:42,689 Removed build tracker: '/tmp/pip-build-tracker-38sflz6r'