2025-12-17T20:59:35,270 Created temporary directory: /tmp/pip-ephem-wheel-cache-8uiacn3c 2025-12-17T20:59:35,272 Created temporary directory: /tmp/pip-build-tracker-15wffrgc 2025-12-17T20:59:35,273 Initialized build tracking at /tmp/pip-build-tracker-15wffrgc 2025-12-17T20:59:35,273 Created build tracker: /tmp/pip-build-tracker-15wffrgc 2025-12-17T20:59:35,274 Entered build tracker: /tmp/pip-build-tracker-15wffrgc 2025-12-17T20:59:35,275 Created temporary directory: /tmp/pip-wheel-x5w4z_an 2025-12-17T20:59:35,277 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-17T20:59:35,280 Created temporary directory: /tmp/pip-ephem-wheel-cache-dbwnl30f 2025-12-17T20:59:35,301 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-17T20:59:35,305 2 location(s) to search for versions of mdapy: 2025-12-17T20:59:35,305 * https://pypi.org/simple/mdapy/ 2025-12-17T20:59:35,305 * https://www.piwheels.org/simple/mdapy/ 2025-12-17T20:59:35,305 Fetching project page and analyzing links: https://pypi.org/simple/mdapy/ 2025-12-17T20:59:35,306 Getting page https://pypi.org/simple/mdapy/ 2025-12-17T20:59:35,308 Found index url https://pypi.org/simple 2025-12-17T20:59:35,574 Fetched page https://pypi.org/simple/mdapy/ as application/vnd.pypi.simple.v1+json 2025-12-17T20:59:35,672 Skipping link: No binaries permitted for mdapy: 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https://files.pythonhosted.org/packages/7f/cb/48cfb3e5c15207918191d246d4e4bb62f3584f9de4aa5e0b265f699017a6/mdapy-1.0.0a3-cp39-cp39-macosx_14_0_arm64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.9) 2025-12-17T20:59:36,012 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/f2/34/0d895bb11d2e2d764129b738e66ca3e7ef26ddc15ed32bad8d05d5393cab/mdapy-1.0.0a3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.9) 2025-12-17T20:59:36,013 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/c4/15/29e9ed914fdf5176cf1f9ce2e89efc7ae099ca506559800dd5d9db1e577d/mdapy-1.0.0a3-cp39-cp39-win32.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.9) 2025-12-17T20:59:36,013 Skipping link: No binaries permitted for mdapy: https://files.pythonhosted.org/packages/31/27/f99058604ad7e890966773b051459cffcdea4a7bffb8f391bd4292f981cb/mdapy-1.0.0a3-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/mdapy/) (requires-python:>=3.9) 2025-12-17T20:59:36,014 Found link https://files.pythonhosted.org/packages/f0/8a/d71d61a8533739e4810a82fb0b0e119b24c1a7d1eaf8926b4432787182f1/mdapy-1.0.0a3.tar.gz (from https://pypi.org/simple/mdapy/) (requires-python:>=3.9), version: 1.0.0a3 2025-12-17T20:59:36,015 Fetching project page and analyzing links: https://www.piwheels.org/simple/mdapy/ 2025-12-17T20:59:36,016 Getting page https://www.piwheels.org/simple/mdapy/ 2025-12-17T20:59:36,017 Found index url https://www.piwheels.org/simple 2025-12-17T20:59:36,177 Fetched page https://www.piwheels.org/simple/mdapy/ as text/html 2025-12-17T20:59:36,202 Skipping link: No binaries permitted for mdapy: 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https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=2117b74bde6a9e9fdd5ec1655ac60541683dc8de05a667b67a329ab08d36b558 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,241 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=2117b74bde6a9e9fdd5ec1655ac60541683dc8de05a667b67a329ab08d36b558 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,242 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.4-cp311-cp311-linux_armv6l.whl#sha256=0fd5eff1452802d26df080e4a364476ec70dd73184afdef65d3569aaeaefaacd (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,242 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.4-cp311-cp311-linux_armv7l.whl#sha256=0fd5eff1452802d26df080e4a364476ec70dd73184afdef65d3569aaeaefaacd (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,243 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=66dfe86b09862b2a244119be790fe588da000a82d6e9a7a4a517d68d3d52621b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,243 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=66dfe86b09862b2a244119be790fe588da000a82d6e9a7a4a517d68d3d52621b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,244 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.3-cp311-cp311-linux_armv6l.whl#sha256=8cb78787290c397b9dfece2e2dea33932dbd7f8bfc25102ffb19d3cfc3e8a21b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,244 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.3-cp311-cp311-linux_armv7l.whl#sha256=8cb78787290c397b9dfece2e2dea33932dbd7f8bfc25102ffb19d3cfc3e8a21b (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,245 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=60b547ad8a094bed5c30220348077063f31aa610cd786220c201b113ce3bcce7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,245 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=60b547ad8a094bed5c30220348077063f31aa610cd786220c201b113ce3bcce7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,246 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.2-cp311-cp311-linux_armv6l.whl#sha256=3b806283528bd30dd065430bcac469fdfa9e9c3c51b68bdae3dd21bd50b224e7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,246 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.2-cp311-cp311-linux_armv7l.whl#sha256=3b806283528bd30dd065430bcac469fdfa9e9c3c51b68bdae3dd21bd50b224e7 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,247 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=bdfb377dcc2463dc346ce1b63cfcf791a2ebfb039812edd97171e427316fab54 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,247 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=bdfb377dcc2463dc346ce1b63cfcf791a2ebfb039812edd97171e427316fab54 (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,248 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv6l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,248 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.1-cp311-cp311-linux_armv7l.whl#sha256=4a614bb384e0b45f19f4a1b65ea1bab28abda3e4b1fa3cba4c7160385983f16e (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,249 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=1f00cd684879a3b96744cdb2afedbc5fbca471c4329dd972df12eda72573861d (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,249 Skipping link: No binaries permitted for mdapy: https://archive1.piwheels.org/simple/mdapy/mdapy-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=1f00cd684879a3b96744cdb2afedbc5fbca471c4329dd972df12eda72573861d (from https://www.piwheels.org/simple/mdapy/) (requires-python:>=3.8,<3.12) 2025-12-17T20:59:36,250 Skipping link: not a file: https://www.piwheels.org/simple/mdapy/ 2025-12-17T20:59:36,250 Skipping link: not a file: https://pypi.org/simple/mdapy/ 2025-12-17T20:59:36,273 Given no hashes to check 1 links for project 'mdapy': discarding no candidates 2025-12-17T20:59:36,291 Collecting mdapy==1.0.0a3 2025-12-17T20:59:36,293 Created temporary directory: /tmp/pip-unpack-86na42x6 2025-12-17T20:59:36,432 Downloading mdapy-1.0.0a3.tar.gz (4.2 MB) 2025-12-17T20:59:37,697 Added mdapy==1.0.0a3 from https://files.pythonhosted.org/packages/f0/8a/d71d61a8533739e4810a82fb0b0e119b24c1a7d1eaf8926b4432787182f1/mdapy-1.0.0a3.tar.gz to build tracker '/tmp/pip-build-tracker-15wffrgc' 2025-12-17T20:59:37,704 Created temporary directory: /tmp/pip-build-env-ll1hb8t8 2025-12-17T20:59:37,709 Installing build dependencies: started 2025-12-17T20:59:37,710 Running command pip subprocess to install build dependencies 2025-12-17T20:59:38,876 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-17T20:59:39,538 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-17T20:59:39,561 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-17T20:59:40,071 Collecting scikit-build-core>=0.4.3 2025-12-17T20:59:40,095 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl (185 kB) 2025-12-17T20:59:40,281 Collecting nanobind>=1.3.2 2025-12-17T20:59:40,310 Using cached https://www.piwheels.org/simple/nanobind/nanobind-2.10.2-py3-none-any.whl (246 kB) 2025-12-17T20:59:40,649 Collecting packaging>=23.2 2025-12-17T20:59:40,666 Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB) 2025-12-17T20:59:40,772 Collecting pathspec>=0.10.1 2025-12-17T20:59:40,787 Using cached https://www.piwheels.org/simple/pathspec/pathspec-0.12.1-py3-none-any.whl (31 kB) 2025-12-17T20:59:43,496 Installing collected packages: nanobind, pathspec, packaging, scikit-build-core 2025-12-17T20:59:44,844 Successfully installed nanobind-2.10.2 packaging-25.0 pathspec-0.12.1 scikit-build-core-0.11.6 2025-12-17T20:59:45,080 Installing build dependencies: finished with status 'done' 2025-12-17T20:59:45,087 Getting requirements to build wheel: started 2025-12-17T20:59:45,088 Running command Getting requirements to build wheel 2025-12-17T20:59:45,694 Getting requirements to build wheel: finished with status 'done' 2025-12-17T20:59:45,697 Created temporary directory: /tmp/pip-modern-metadata-acz_fu8d 2025-12-17T20:59:45,699 Preparing metadata (pyproject.toml): started 2025-12-17T20:59:45,700 Running command Preparing metadata (pyproject.toml) 2025-12-17T20:59:46,372 *** scikit-build-core 0.11.6 using CMake 3.25.1 (metadata_wheel) 2025-12-17T20:59:46,474 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-17T20:59:46,478 Source in /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986 has version 1.0.0a3, which satisfies requirement mdapy==1.0.0a3 from https://files.pythonhosted.org/packages/f0/8a/d71d61a8533739e4810a82fb0b0e119b24c1a7d1eaf8926b4432787182f1/mdapy-1.0.0a3.tar.gz 2025-12-17T20:59:46,479 Removed mdapy==1.0.0a3 from https://files.pythonhosted.org/packages/f0/8a/d71d61a8533739e4810a82fb0b0e119b24c1a7d1eaf8926b4432787182f1/mdapy-1.0.0a3.tar.gz from build tracker '/tmp/pip-build-tracker-15wffrgc' 2025-12-17T20:59:46,486 Created temporary directory: /tmp/pip-unpack-4vkq23aa 2025-12-17T20:59:46,486 Building wheels for collected packages: mdapy 2025-12-17T20:59:46,491 Created temporary directory: /tmp/pip-wheel-uyte4lik 2025-12-17T20:59:46,492 Destination directory: /tmp/pip-wheel-uyte4lik 2025-12-17T20:59:46,494 Building wheel for mdapy (pyproject.toml): started 2025-12-17T20:59:46,495 Running command Building wheel for mdapy (pyproject.toml) 2025-12-17T20:59:47,168 *** scikit-build-core 0.11.6 using CMake 3.25.1 (wheel) 2025-12-17T20:59:47,193 *** Configuring CMake... 2025-12-17T20:59:47,290 loading initial cache file build/cp311-cp311-linux_armv7l/CMakeInit.txt 2025-12-17T20:59:47,629 -- The CXX compiler identification is GNU 12.2.0 2025-12-17T20:59:47,685 -- Detecting CXX compiler ABI info 2025-12-17T20:59:48,010 -- Detecting CXX compiler ABI info - done 2025-12-17T20:59:48,073 -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ - skipped 2025-12-17T20:59:48,075 -- Detecting CXX compile features 2025-12-17T20:59:48,079 -- Detecting CXX compile features - done 2025-12-17T20:59:48,765 -- Found Python: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.8") found components: Interpreter Development.Module 2025-12-17T20:59:49,613 -- Found OpenMP_CXX: -fopenmp (found version "4.5") 2025-12-17T20:59:49,614 -- Found OpenMP: TRUE (found version "4.5") found components: CXX 2025-12-17T20:59:49,797 -- Configuring done 2025-12-17T20:59:50,034 -- Generating done 2025-12-17T20:59:50,172 -- Build files have been written to: /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/build/cp311-cp311-linux_armv7l 2025-12-17T20:59:50,242 *** Building project with Ninja... 2025-12-17T20:59:58,314 [1/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_internals.cpp.o 2025-12-17T20:59:59,723 [2/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_ndarray.cpp.o 2025-12-17T21:00:02,869 [3/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_func.cpp.o 2025-12-17T21:00:04,175 [4/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_ft.cpp.o 2025-12-17T21:00:05,687 [5/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_type.cpp.o 2025-12-17T21:00:05,861 [6/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_static_property.cpp.o 2025-12-17T21:00:06,954 [7/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/nb_enum.cpp.o 2025-12-17T21:00:12,505 [8/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/trampoline.cpp.o 2025-12-17T21:00:13,139 [9/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/error.cpp.o 2025-12-17T21:00:13,545 [10/86] Building CXX object CMakeFiles/_structure_entropy.dir/src/structure_entropy.cpp.o 2025-12-17T21:00:14,193 [11/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/implicit.cpp.o 2025-12-17T21:00:15,309 [12/86] Building CXX object CMakeFiles/nanobind-static.dir/tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/src/common.cpp.o 2025-12-17T21:00:16,014 [13/86] Linking CXX static library libnanobind-static.a 2025-12-17T21:00:16,632 [14/86] Linking CXX shared module _structure_entropy.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:17,194 [15/86] Building CXX object CMakeFiles/_neighbor.dir/src/neighbor.cpp.o 2025-12-17T21:00:17,822 [16/86] Linking CXX shared module _neighbor.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:22,527 [17/86] Building CXX object CMakeFiles/_qnepcal.dir/extern/NEPCPU/qnep/ewald.cpp.o 2025-12-17T21:00:28,979 [18/86] Building CXX object CMakeFiles/_nepcal.dir/src/neppy.cpp.o 2025-12-17T21:00:34,298 [19/86] Building CXX object CMakeFiles/_repeat_cell.dir/src/repeat_cell.cpp.o 2025-12-17T21:00:34,970 [20/86] Linking CXX shared module _repeat_cell.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:35,469 [21/86] Building CXX object CMakeFiles/_qnepcal.dir/src/qneppy.cpp.o 2025-12-17T21:00:42,792 [22/86] Building CXX object CMakeFiles/_voronoi.dir/src/voronoi.cpp.o 2025-12-17T21:00:42,793 In file included from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/voro++.hh:337, 2025-12-17T21:00:42,794 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/voronoi.cpp:3: 2025-12-17T21:00:42,795 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,796 16 | class container_base_2d::iterator : public std::iterator { 2025-12-17T21:00:42,797 | ^~~~~~~~ 2025-12-17T21:00:42,798 In file included from /usr/include/c++/12/string:45, 2025-12-17T21:00:42,799 from /usr/include/c++/12/stdexcept:39, 2025-12-17T21:00:42,800 from /tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/include/nanobind/nanobind.h:34, 2025-12-17T21:00:42,800 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/type.h:2, 2025-12-17T21:00:42,801 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/box.h:2, 2025-12-17T21:00:42,802 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/voronoi.cpp:1: 2025-12-17T21:00:42,802 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,803 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,804 | ^~~~~~~~ 2025-12-17T21:00:42,804 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,805 21 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:42,806 | ^~~~~~~~ 2025-12-17T21:00:42,807 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,807 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,808 | ^~~~~~~~ 2025-12-17T21:00:42,809 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,810 22 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:42,811 | ^~~~~~~~ 2025-12-17T21:00:42,812 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,813 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,814 | ^~~~~~~~ 2025-12-17T21:00:42,831 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,832 23 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:42,833 | ^~~~~~~~ 2025-12-17T21:00:42,834 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,835 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,836 | ^~~~~~~~ 2025-12-17T21:00:42,837 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,838 153 | class container_base_2d::iterator_subset : public std::iterator { 2025-12-17T21:00:42,839 | ^~~~~~~~ 2025-12-17T21:00:42,840 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,841 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,842 | ^~~~~~~~ 2025-12-17T21:00:42,843 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,844 155 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:42,845 | ^~~~~~~~ 2025-12-17T21:00:42,846 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,847 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,847 | ^~~~~~~~ 2025-12-17T21:00:42,848 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,849 156 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:42,849 | ^~~~~~~~ 2025-12-17T21:00:42,850 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,851 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,852 | ^~~~~~~~ 2025-12-17T21:00:42,853 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,854 157 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:42,854 | ^~~~~~~~ 2025-12-17T21:00:42,855 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,856 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,857 | ^~~~~~~~ 2025-12-17T21:00:42,858 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,859 246 | class container_base_2d::iterator_order : public std::iterator { 2025-12-17T21:00:42,859 | ^~~~~~~~ 2025-12-17T21:00:42,871 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,872 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,873 | ^~~~~~~~ 2025-12-17T21:00:42,874 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,875 248 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:42,876 | ^~~~~~~~ 2025-12-17T21:00:42,877 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,878 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,879 | ^~~~~~~~ 2025-12-17T21:00:42,880 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,881 249 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:42,882 | ^~~~~~~~ 2025-12-17T21:00:42,883 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,884 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,884 | ^~~~~~~~ 2025-12-17T21:00:42,885 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,886 250 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:42,887 | ^~~~~~~~ 2025-12-17T21:00:42,888 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,888 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,889 | ^~~~~~~~ 2025-12-17T21:00:42,890 In file included from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/voro++.hh:338: 2025-12-17T21:00:42,891 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:18:53: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,891 18 | class container_base_3d::iterator : public std::iterator 2025-12-17T21:00:42,892 | ^~~~~~~~ 2025-12-17T21:00:42,893 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,894 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,894 | ^~~~~~~~ 2025-12-17T21:00:42,895 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,896 24 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:42,896 | ^~~~~~~~ 2025-12-17T21:00:42,897 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,898 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,899 | ^~~~~~~~ 2025-12-17T21:00:42,899 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:25:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,900 25 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:42,901 | ^~~~~~~~ 2025-12-17T21:00:42,902 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,903 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,911 | ^~~~~~~~ 2025-12-17T21:00:42,911 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:26:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,912 26 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:42,913 | ^~~~~~~~ 2025-12-17T21:00:42,914 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,914 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,915 | ^~~~~~~~ 2025-12-17T21:00:42,916 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:180:60: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,917 180 | class container_base_3d::iterator_subset : public std::iterator 2025-12-17T21:00:42,918 | ^~~~~~~~ 2025-12-17T21:00:42,918 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,919 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,920 | ^~~~~~~~ 2025-12-17T21:00:42,921 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:183:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,922 183 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:42,923 | ^~~~~~~~ 2025-12-17T21:00:42,923 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,924 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,925 | ^~~~~~~~ 2025-12-17T21:00:42,926 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:184:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,927 184 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:42,927 | ^~~~~~~~ 2025-12-17T21:00:42,928 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,929 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,930 | ^~~~~~~~ 2025-12-17T21:00:42,941 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:185:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,942 185 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:42,943 | ^~~~~~~~ 2025-12-17T21:00:42,944 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,945 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,946 | ^~~~~~~~ 2025-12-17T21:00:42,947 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:290:59: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,948 290 | class container_base_3d::iterator_order : public std::iterator 2025-12-17T21:00:42,949 | ^~~~~~~~ 2025-12-17T21:00:42,949 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,950 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,951 | ^~~~~~~~ 2025-12-17T21:00:42,953 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:293:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,953 293 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:42,954 | ^~~~~~~~ 2025-12-17T21:00:42,955 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,956 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,957 | ^~~~~~~~ 2025-12-17T21:00:42,957 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:294:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,958 294 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:42,959 | ^~~~~~~~ 2025-12-17T21:00:42,960 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,961 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,962 | ^~~~~~~~ 2025-12-17T21:00:42,962 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:295:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,963 295 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:42,964 | ^~~~~~~~ 2025-12-17T21:00:42,965 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,966 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,967 | ^~~~~~~~ 2025-12-17T21:00:42,968 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:435:60: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,968 435 | class container_triclinic_base::iterator : public std::iterator 2025-12-17T21:00:42,969 | ^~~~~~~~ 2025-12-17T21:00:42,970 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,971 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,972 | ^~~~~~~~ 2025-12-17T21:00:42,973 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:448:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,974 448 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:42,975 | ^~~~~~~~ 2025-12-17T21:00:42,976 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,977 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,978 | ^~~~~~~~ 2025-12-17T21:00:42,979 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:449:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,980 449 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:42,981 | ^~~~~~~~ 2025-12-17T21:00:42,982 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,983 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,983 | ^~~~~~~~ 2025-12-17T21:00:42,984 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:450:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,985 450 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:42,985 | ^~~~~~~~ 2025-12-17T21:00:42,986 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,987 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,987 | ^~~~~~~~ 2025-12-17T21:00:42,988 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:522:66: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,988 522 | class container_triclinic_base::iterator_order : public std::iterator 2025-12-17T21:00:42,989 | ^~~~~~~~ 2025-12-17T21:00:42,990 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:42,990 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:42,991 | ^~~~~~~~ 2025-12-17T21:00:42,992 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:530:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:42,993 530 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:00:43,002 | ^~~~~~~~ 2025-12-17T21:00:43,002 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:43,003 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:43,004 | ^~~~~~~~ 2025-12-17T21:00:43,005 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:531:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:43,006 531 | typedef typename std::iterator::reference reference; 2025-12-17T21:00:43,007 | ^~~~~~~~ 2025-12-17T21:00:43,008 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:43,009 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:43,010 | ^~~~~~~~ 2025-12-17T21:00:43,010 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:532:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:00:43,011 532 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:00:43,012 | ^~~~~~~~ 2025-12-17T21:00:43,013 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:00:43,014 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:00:43,015 | ^~~~~~~~ 2025-12-17T21:00:43,739 [23/86] Building CXX object CMakeFiles/_qnepcal.dir/extern/NEPCPU/qnep/qnep.cpp.o 2025-12-17T21:00:44,010 [24/86] Building CXX object CMakeFiles/_nepcal.dir/extern/NEPCPU/nep.cpp.o 2025-12-17T21:00:44,146 [25/86] Building CXX object CMakeFiles/_cluster.dir/src/cluster.cpp.o 2025-12-17T21:00:44,605 [26/86] Linking CXX shared module _qnepcal.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:44,804 [27/86] Linking CXX shared module _cluster.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:45,037 [28/86] Linking CXX shared module _nepcal.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:51,429 [29/86] Building CXX object CMakeFiles/_spline.dir/src/spline.cpp.o 2025-12-17T21:00:51,849 [30/86] Building CXX object CMakeFiles/_polycrystal.dir/src/polycrystal.cpp.o 2025-12-17T21:00:52,061 [31/86] Linking CXX shared module _spline.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:52,628 [32/86] Linking CXX shared module _polycrystal.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:55,426 [33/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_alloy_types.cpp.o 2025-12-17T21:00:55,739 [34/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_canonical_coloured.cpp.o 2025-12-17T21:00:56,695 [35/86] Building CXX object CMakeFiles/_aabbtree.dir/src/aabb_tree.cpp.o 2025-12-17T21:00:56,697 In file included from /usr/include/c++/12/algorithm:61, 2025-12-17T21:00:56,698 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.h:7, 2025-12-17T21:00:56,699 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:2: 2025-12-17T21:00:56,699 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,700 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,701 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2025-12-17T21:00:56,702 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,703 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2025-12-17T21:00:56,704 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_comp_val&, const array&)> >]’: 2025-12-17T21:00:56,704 /usr/include/c++/12/bits/stl_heap.h:135:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,706 135 | __push_heap(_RandomAccessIterator __first, 2025-12-17T21:00:56,707 | ^~~~~~~~~~~ 2025-12-17T21:00:56,708 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,709 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,710 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2025-12-17T21:00:56,711 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,712 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,712 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,713 1802 | __insertion_sort(_RandomAccessIterator __first, 2025-12-17T21:00:56,714 | ^~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,715 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,716 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,717 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,718 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,719 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,720 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,721 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2025-12-17T21:00:56,722 | ^~~~~~~~~~~~~ 2025-12-17T21:00:56,723 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,724 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,725 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,731 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,732 1908 | __introsort_loop(_RandomAccessIterator __first, 2025-12-17T21:00:56,733 | ^~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,734 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,735 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,736 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2025-12-17T21:00:56,737 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,738 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’: 2025-12-17T21:00:56,739 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,740 1908 | __introsort_loop(_RandomAccessIterator __first, 2025-12-17T21:00:56,741 | ^~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,743 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,744 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,745 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2025-12-17T21:00:56,746 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,747 In file included from /usr/include/c++/12/vector:70, 2025-12-17T21:00:56,748 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.h:5: 2025-12-17T21:00:56,749 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {}; _Tp = Node; _Alloc = std::allocator]’: 2025-12-17T21:00:56,750 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-12-17T21:00:56,751 439 | vector<_Tp, _Alloc>:: 2025-12-17T21:00:56,752 | ^~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,753 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2025-12-17T21:00:56,754 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-17T21:00:56,755 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {}; _Tp = Node; _Alloc = std::allocator]’, 2025-12-17T21:00:56,756 inlined from ‘int AABBTree::build_recursive(int, int, const double*, const double*, const double*)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:55:23: 2025-12-17T21:00:56,757 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:00:56,758 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-17T21:00:56,758 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,759 In file included from /usr/include/c++/12/vector:64: 2025-12-17T21:00:56,760 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2025-12-17T21:00:56,761 inlined from ‘void AABBTree::build_with_coords(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:289:37: 2025-12-17T21:00:56,762 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,763 1287 | _M_realloc_insert(end(), __x); 2025-12-17T21:00:56,764 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-17T21:00:56,765 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’, 2025-12-17T21:00:56,766 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = AABBTree::build_with_coords(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI)::&, const array&)>]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2025-12-17T21:00:56,767 inlined from ‘void AABBTree::build_with_coords(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:295:14: 2025-12-17T21:00:56,768 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,769 1937 | std::__introsort_loop(__first, __last, 2025-12-17T21:00:56,770 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,771 1938 | std::__lg(__last - __first) * 2, 2025-12-17T21:00:56,781 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,782 1939 | __comp); 2025-12-17T21:00:56,783 | ~~~~~~~ 2025-12-17T21:00:56,784 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’, 2025-12-17T21:00:56,785 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2025-12-17T21:00:56,787 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = AABBTree::build_with_coords(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI)::&, const array&)>]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2025-12-17T21:00:56,787 inlined from ‘void AABBTree::build_with_coords(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:295:14: 2025-12-17T21:00:56,788 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,789 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2025-12-17T21:00:56,790 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,791 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,792 1854 | std::__insertion_sort(__first, __last, __comp); 2025-12-17T21:00:56,792 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,793 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2025-12-17T21:00:56,794 inlined from ‘void knn(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI, int, TwoArrayI, TwoArrayD)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:490:37: 2025-12-17T21:00:56,795 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,796 1287 | _M_realloc_insert(end(), __x); 2025-12-17T21:00:56,797 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-17T21:00:56,798 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’, 2025-12-17T21:00:56,799 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = knn(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI, int, TwoArrayI, TwoArrayD)::&, const array&)>]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2025-12-17T21:00:56,800 inlined from ‘void knn(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI, int, TwoArrayI, TwoArrayD)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:496:14: 2025-12-17T21:00:56,801 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,802 1937 | std::__introsort_loop(__first, __last, 2025-12-17T21:00:56,803 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,804 1938 | std::__lg(__last - __first) * 2, 2025-12-17T21:00:56,805 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,806 1939 | __comp); 2025-12-17T21:00:56,807 | ~~~~~~~ 2025-12-17T21:00:56,808 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’, 2025-12-17T21:00:56,809 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&, const array&)> >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2025-12-17T21:00:56,809 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >; _Compare = knn(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI, int, TwoArrayI, TwoArrayD)::&, const array&)>]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2025-12-17T21:00:56,810 inlined from ‘void knn(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI, int, TwoArrayI, TwoArrayD)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/aabb_tree.cpp:496:14: 2025-12-17T21:00:56,811 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,812 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2025-12-17T21:00:56,813 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:56,814 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2025-12-17T21:00:56,815 1854 | std::__insertion_sort(__first, __last, __comp); 2025-12-17T21:00:56,816 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:00:57,070 [36/86] Building CXX object CMakeFiles/_ptm.dir/src/polyhedral_template_matching.cpp.o 2025-12-17T21:00:57,540 [37/86] Building CXX object CMakeFiles/_cna.dir/src/cna.cpp.o 2025-12-17T21:00:57,623 [38/86] Linking CXX shared module _aabbtree.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:58,174 [39/86] Linking CXX shared module _cna.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:00:58,326 [40/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_correspondences.cpp.o 2025-12-17T21:00:58,983 [41/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_convex_hull_incremental.cpp.o 2025-12-17T21:00:59,002 [42/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_deformation_gradient.cpp.o 2025-12-17T21:01:00,001 [43/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_graph_data.cpp.o 2025-12-17T21:01:00,522 [44/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_graph_tools.cpp.o 2025-12-17T21:01:00,675 [45/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_index.cpp.o 2025-12-17T21:01:01,117 [46/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_initialize_data.cpp.o 2025-12-17T21:01:01,506 [47/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_map_templates.cpp.o 2025-12-17T21:01:02,416 [48/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_normalize_vertices.cpp.o 2025-12-17T21:01:03,496 [49/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_polar.cpp.o 2025-12-17T21:01:04,507 [50/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_solid_angles.cpp.o 2025-12-17T21:01:05,147 [51/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_multishell.cpp.o 2025-12-17T21:01:05,531 [52/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_neighbour_ordering.cpp.o 2025-12-17T21:01:05,574 [53/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_quat.cpp.o 2025-12-17T21:01:08,862 [54/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_structure_matcher.cpp.o 2025-12-17T21:01:12,750 [55/86] Building CXX object CMakeFiles/_rdf.dir/src/radial_distribution_function.cpp.o 2025-12-17T21:01:13,466 [56/86] Linking CXX shared module _rdf.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:16,867 [57/86] Building CXX object CMakeFiles/_ptm.dir/extern/ptm/ptm_voronoi_cell.cpp.o 2025-12-17T21:01:16,868 In file included from /usr/include/c++/12/vector:70, 2025-12-17T21:01:16,869 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/ptm/ptm_voronoi_cell.h:58, 2025-12-17T21:01:16,870 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/ptm/ptm_voronoi_cell.cpp:58: 2025-12-17T21:01:16,871 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-12-17T21:01:16,872 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-12-17T21:01:16,892 439 | vector<_Tp, _Alloc>:: 2025-12-17T21:01:16,892 | ^~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:16,893 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-17T21:01:16,894 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-17T21:01:16,895 inlined from ‘void ptm_voro::voronoicell_base::face_areas(std::vector&)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/ptm/ptm_voronoi_cell.cpp:1248:36: 2025-12-17T21:01:16,896 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:16,897 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-17T21:01:16,898 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:17,886 [58/86] Linking CXX shared module _ptm.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:19,790 [59/86] Building CXX object CMakeFiles/_sbo.dir/src/steinhardt_bond_orientation.cpp.o 2025-12-17T21:01:19,791 In file included from /usr/include/c++/12/vector:70, 2025-12-17T21:01:19,792 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/steinhardt_bond_orientation.cpp:5: 2025-12-17T21:01:19,793 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-12-17T21:01:19,794 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-12-17T21:01:19,795 523 | vector<_Tp, _Alloc>:: 2025-12-17T21:01:19,796 | ^~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:19,797 In file included from /usr/include/c++/12/vector:64: 2025-12-17T21:01:19,798 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-17T21:01:19,799 inlined from ‘void get_sq(ROneArrayD, ROneArrayD, ROneArrayD, RTwoArrayD, ROneArrayD, ROneArrayI, RTwoArrayI, RTwoArrayD, ROneArrayI, RTwoArrayD, ROneArrayI, int, int, bool, bool, bool, bool, double, bool, ThreeArrayD, ThreeArrayD, TwoArrayD)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/steinhardt_bond_orientation.cpp:747:22: 2025-12-17T21:01:19,800 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:19,801 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-12-17T21:01:19,802 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:20,558 [60/86] Linking CXX shared module _sbo.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:24,328 [61/86] Building CXX object CMakeFiles/_sfc.dir/src/structure_factor.cpp.o 2025-12-17T21:01:24,329 In file included from /usr/include/c++/12/vector:70, 2025-12-17T21:01:24,330 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/structure_factor.cpp:4: 2025-12-17T21:01:24,331 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const Vec3&}; _Tp = Vec3; _Alloc = std::allocator]’: 2025-12-17T21:01:24,332 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-12-17T21:01:24,333 439 | vector<_Tp, _Alloc>:: 2025-12-17T21:01:24,334 | ^~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:24,335 In file included from /usr/include/c++/12/vector:64: 2025-12-17T21:01:24,336 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Vec3; _Alloc = std::allocator]’, 2025-12-17T21:01:24,337 inlined from ‘_ZNK21StructureFactorDirect15generateKPointsERK3Boxdd._omp_fn.0’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/structure_factor.cpp:192:65: 2025-12-17T21:01:24,338 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:24,339 1287 | _M_realloc_insert(end(), __x); 2025-12-17T21:01:24,340 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-17T21:01:24,387 [62/86] Building CXX object CMakeFiles/_wcp.dir/src/warren_cowley_parameter.cpp.o 2025-12-17T21:01:25,080 [63/86] Linking CXX shared module _wcp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:25,173 [64/86] Building CXX object CMakeFiles/_csp.dir/src/centro_symmetry_parameter.cpp.o 2025-12-17T21:01:25,174 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2025-12-17T21:01:25,175 from /usr/include/c++/12/algorithm:61, 2025-12-17T21:01:25,176 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/centro_symmetry_parameter.cpp:8: 2025-12-17T21:01:25,177 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2025-12-17T21:01:25,178 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:25,179 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2025-12-17T21:01:25,180 | ^~~~~~~~~~~~~ 2025-12-17T21:01:25,232 [65/86] Linking CXX shared module _sfc.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:25,858 [66/86] Linking CXX shared module _csp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:26,543 [67/86] Building CXX object CMakeFiles/_eam.dir/src/eam.cpp.o 2025-12-17T21:01:26,544 In file included from /usr/include/c++/12/vector:63, 2025-12-17T21:01:26,545 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/spline.h:3, 2025-12-17T21:01:26,546 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/eam.h:4, 2025-12-17T21:01:26,547 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/eam.cpp:1: 2025-12-17T21:01:26,548 /usr/include/c++/12/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*]’: 2025-12-17T21:01:26,548 /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,549 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, 2025-12-17T21:01:26,550 | ^~~~~~~~~~~~~~~~ 2025-12-17T21:01:26,551 /usr/include/c++/12/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,552 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; bool _TrivialValueTypes = false]’, 2025-12-17T21:01:26,553 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2025-12-17T21:01:26,554 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; _Tp = CubicSpline]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2025-12-17T21:01:26,555 inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = CubicSpline; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1617:35, 2025-12-17T21:01:26,556 inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = CubicSpline; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/vector.tcc:232:44: 2025-12-17T21:01:26,557 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,558 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-12-17T21:01:26,559 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:26,561 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; bool _TrivialValueTypes = false]’, 2025-12-17T21:01:26,562 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2025-12-17T21:01:26,563 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; _Tp = CubicSpline]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2025-12-17T21:01:26,564 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CubicSpline; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2025-12-17T21:01:26,565 inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = vector; _Args = {const vector >&}]’ at /usr/include/c++/12/bits/stl_construct.h:119:7, 2025-12-17T21:01:26,566 inlined from ‘_ForwardIterator std::__do_uninit_fill_n(_ForwardIterator, _Size, const _Tp&) [with _ForwardIterator = vector*; _Size = unsigned int; _Tp = vector]’ at /usr/include/c++/12/bits/stl_uninitialized.h:267:21: 2025-12-17T21:01:26,573 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,574 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-12-17T21:01:26,575 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:26,576 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; bool _TrivialValueTypes = false]’, 2025-12-17T21:01:26,577 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2025-12-17T21:01:26,578 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; _Tp = CubicSpline]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2025-12-17T21:01:26,579 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CubicSpline; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2025-12-17T21:01:26,580 inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::vector; _Args = {const std::vector >&}; _Tp = std::vector]’ at /usr/include/c++/12/bits/new_allocator.h:175:4, 2025-12-17T21:01:26,581 inlined from ‘static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::vector; _Args = {const std::vector >&}; _Tp = std::vector]’ at /usr/include/c++/12/bits/alloc_traits.h:516:17, 2025-12-17T21:01:26,592 inlined from ‘std::vector<_Tp, _Alloc>::_Temporary_value::_Temporary_value(std::vector<_Tp, _Alloc>*, _Args&& ...) [with _Args = {const std::vector >&}; _Tp = std::vector; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1830:30, 2025-12-17T21:01:26,593 inlined from ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = std::vector; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/vector.tcc:534:25: 2025-12-17T21:01:26,594 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,595 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-12-17T21:01:26,596 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:26,597 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; bool _TrivialValueTypes = false]’, 2025-12-17T21:01:26,598 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2025-12-17T21:01:26,599 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; _Tp = CubicSpline]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2025-12-17T21:01:26,600 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CubicSpline; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2025-12-17T21:01:26,601 inlined from ‘EAM::EAM(const EAM&)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/eam.h:8:7, 2025-12-17T21:01:26,602 inlined from ‘void nanobind::detail::wrap_copy(void*, const void*) [with T = EAM]’ at /tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/include/nanobind/nb_class.h:238:5: 2025-12-17T21:01:26,603 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,604 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-12-17T21:01:26,605 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:26,606 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; bool _TrivialValueTypes = false]’, 2025-12-17T21:01:26,607 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2025-12-17T21:01:26,608 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; _Tp = CubicSpline]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2025-12-17T21:01:26,609 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CubicSpline; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2025-12-17T21:01:26,610 inlined from ‘EAM::EAM(const EAM&)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/eam.h:8:7, 2025-12-17T21:01:26,611 inlined from ‘void nanobind::detail::wrap_copy(void*, const void*) [with T = EAM]’ at /tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/include/nanobind/nb_class.h:238:5: 2025-12-17T21:01:26,612 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,613 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-12-17T21:01:26,614 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:26,615 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; bool _TrivialValueTypes = false]’, 2025-12-17T21:01:26,616 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2025-12-17T21:01:26,617 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = CubicSpline*; _Tp = CubicSpline]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2025-12-17T21:01:26,618 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = CubicSpline; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2025-12-17T21:01:26,620 inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = vector; _Args = {const vector >&}]’ at /usr/include/c++/12/bits/stl_construct.h:119:7, 2025-12-17T21:01:26,621 inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = vector*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:120:21, 2025-12-17T21:01:26,632 inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; _ForwardIterator = std::vector*; bool _TrivialValueTypes = false]’ at /usr/include/c++/12/bits/stl_uninitialized.h:137:32, 2025-12-17T21:01:26,633 inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = vector*]’ at /usr/include/c++/12/bits/stl_uninitialized.h:185:15, 2025-12-17T21:01:26,633 inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator*, vector > >; _ForwardIterator = vector*; _Tp = vector]’ at /usr/include/c++/12/bits/stl_uninitialized.h:372:37, 2025-12-17T21:01:26,634 inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = std::vector; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:601:31, 2025-12-17T21:01:26,636 inlined from ‘EAM::EAM(const EAM&)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/src/eam.h:8:7, 2025-12-17T21:01:26,637 inlined from ‘void nanobind::detail::wrap_copy(void*, const void*) [with T = EAM]’ at /tmp/pip-build-env-ll1hb8t8/overlay/local/lib/python3.11/dist-packages/nanobind/include/nanobind/nb_class.h:238:5: 2025-12-17T21:01:26,637 /usr/include/c++/12/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:26,638 137 | { return std::__do_uninit_copy(__first, __last, __result); } 2025-12-17T21:01:26,639 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:27,343 [68/86] Linking CXX shared module _eam.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:30,230 [69/86] Building CXX object CMakeFiles/_strain.dir/src/atomic_strain.cpp.o 2025-12-17T21:01:30,822 [70/86] Linking CXX shared module _strain.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:32,779 [71/86] Building CXX object CMakeFiles/_fccpft.dir/src/identify_fcc_planar_faults.cpp.o 2025-12-17T21:01:32,959 [72/86] Building CXX object CMakeFiles/_aja.dir/src/ackland_jones_analysis.cpp.o 2025-12-17T21:01:33,364 [73/86] Linking CXX shared module _fccpft.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:33,662 [74/86] Linking CXX shared module _aja.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:37,388 [75/86] Building CXX object CMakeFiles/_atomtemp.dir/src/atomic_temperature.cpp.o 2025-12-17T21:01:37,691 [76/86] Building CXX object CMakeFiles/_cnp.dir/src/common_neighbor_parameter.cpp.o 2025-12-17T21:01:38,211 [77/86] Linking CXX shared module _atomtemp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:38,313 [78/86] Building CXX object CMakeFiles/_split.dir/src/split_file.cpp.o 2025-12-17T21:01:38,364 [79/86] Linking CXX shared module _cnp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:38,790 [80/86] Linking CXX shared module _split.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:40,007 [81/86] Building CXX object CMakeFiles/_lindemann.dir/src/lindemann.cpp.o 2025-12-17T21:01:40,384 [82/86] Linking CXX shared module _lindemann.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:43,485 [83/86] Building CXX object CMakeFiles/_bond_analysis.dir/src/bond_analysis.cpp.o 2025-12-17T21:01:43,825 [84/86] Linking CXX shared module _bond_analysis.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:51,839 [85/86] Building CXX object CMakeFiles/_voronoi.dir/extern/voro++/src/voro++.cc.o 2025-12-17T21:01:51,844 In file included from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/container_2d.cc:10, 2025-12-17T21:01:51,847 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/voro++.cc:10: 2025-12-17T21:01:51,847 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:16:49: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,848 16 | class container_base_2d::iterator : public std::iterator { 2025-12-17T21:01:51,852 | ^~~~~~~~ 2025-12-17T21:01:51,854 In file included from /usr/include/c++/12/bits/stl_algobase.h:65, 2025-12-17T21:01:51,860 from /usr/include/c++/12/vector:60, 2025-12-17T21:01:51,861 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/cell_2d.hh:11, 2025-12-17T21:01:51,862 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/cell_2d.cc:7, 2025-12-17T21:01:51,862 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/voro++.cc:7: 2025-12-17T21:01:51,863 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,863 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,864 | ^~~~~~~~ 2025-12-17T21:01:51,864 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:21:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,865 21 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,865 | ^~~~~~~~ 2025-12-17T21:01:51,866 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,866 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,866 | ^~~~~~~~ 2025-12-17T21:01:51,867 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:22:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,867 22 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,868 | ^~~~~~~~ 2025-12-17T21:01:51,869 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,869 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,869 | ^~~~~~~~ 2025-12-17T21:01:51,870 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:23:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,870 23 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,871 | ^~~~~~~~ 2025-12-17T21:01:51,871 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,872 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,873 | ^~~~~~~~ 2025-12-17T21:01:51,873 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:153:56: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,874 153 | class container_base_2d::iterator_subset : public std::iterator { 2025-12-17T21:01:51,874 | ^~~~~~~~ 2025-12-17T21:01:51,875 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,875 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,876 | ^~~~~~~~ 2025-12-17T21:01:51,877 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:155:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,878 155 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,879 | ^~~~~~~~ 2025-12-17T21:01:51,880 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,880 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,881 | ^~~~~~~~ 2025-12-17T21:01:51,881 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:156:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,882 156 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,882 | ^~~~~~~~ 2025-12-17T21:01:51,883 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,883 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,884 | ^~~~~~~~ 2025-12-17T21:01:51,884 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:157:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,885 157 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,885 | ^~~~~~~~ 2025-12-17T21:01:51,886 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,886 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,887 | ^~~~~~~~ 2025-12-17T21:01:51,888 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:246:55: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,888 246 | class container_base_2d::iterator_order : public std::iterator { 2025-12-17T21:01:51,889 | ^~~~~~~~ 2025-12-17T21:01:51,889 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,890 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,890 | ^~~~~~~~ 2025-12-17T21:01:51,891 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:248:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,892 248 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,892 | ^~~~~~~~ 2025-12-17T21:01:51,893 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,893 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,894 | ^~~~~~~~ 2025-12-17T21:01:51,894 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:249:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,895 249 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,895 | ^~~~~~~~ 2025-12-17T21:01:51,896 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,896 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,897 | ^~~~~~~~ 2025-12-17T21:01:51,897 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_2d.hh:250:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,898 250 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,902 | ^~~~~~~~ 2025-12-17T21:01:51,907 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,909 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,911 | ^~~~~~~~ 2025-12-17T21:01:51,913 In file included from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/container_3d.cc:10, 2025-12-17T21:01:51,914 from /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/voro++.cc:11: 2025-12-17T21:01:51,915 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:18:53: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,915 18 | class container_base_3d::iterator : public std::iterator 2025-12-17T21:01:51,916 | ^~~~~~~~ 2025-12-17T21:01:51,916 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,917 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,918 | ^~~~~~~~ 2025-12-17T21:01:51,918 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:24:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,919 24 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,920 | ^~~~~~~~ 2025-12-17T21:01:51,920 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,921 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,922 | ^~~~~~~~ 2025-12-17T21:01:51,923 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:25:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,925 25 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,926 | ^~~~~~~~ 2025-12-17T21:01:51,927 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,927 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,928 | ^~~~~~~~ 2025-12-17T21:01:51,928 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:26:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,929 26 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,930 | ^~~~~~~~ 2025-12-17T21:01:51,931 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,932 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,932 | ^~~~~~~~ 2025-12-17T21:01:51,932 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:180:60: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,933 180 | class container_base_3d::iterator_subset : public std::iterator 2025-12-17T21:01:51,933 | ^~~~~~~~ 2025-12-17T21:01:51,934 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,934 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,935 | ^~~~~~~~ 2025-12-17T21:01:51,935 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:183:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,936 183 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,936 | ^~~~~~~~ 2025-12-17T21:01:51,937 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,937 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,938 | ^~~~~~~~ 2025-12-17T21:01:51,939 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:184:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,939 184 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,940 | ^~~~~~~~ 2025-12-17T21:01:51,941 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,941 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,942 | ^~~~~~~~ 2025-12-17T21:01:51,942 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:185:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,943 185 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,944 | ^~~~~~~~ 2025-12-17T21:01:51,944 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,945 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,945 | ^~~~~~~~ 2025-12-17T21:01:51,946 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:290:59: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,946 290 | class container_base_3d::iterator_order : public std::iterator 2025-12-17T21:01:51,947 | ^~~~~~~~ 2025-12-17T21:01:51,948 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,948 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,949 | ^~~~~~~~ 2025-12-17T21:01:51,950 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:293:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,950 293 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,951 | ^~~~~~~~ 2025-12-17T21:01:51,951 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,952 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,952 | ^~~~~~~~ 2025-12-17T21:01:51,953 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:294:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,953 294 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,954 | ^~~~~~~~ 2025-12-17T21:01:51,954 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,954 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,955 | ^~~~~~~~ 2025-12-17T21:01:51,955 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:295:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,956 295 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,956 | ^~~~~~~~ 2025-12-17T21:01:51,957 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,957 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,958 | ^~~~~~~~ 2025-12-17T21:01:51,958 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:435:60: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,959 435 | class container_triclinic_base::iterator : public std::iterator 2025-12-17T21:01:51,960 | ^~~~~~~~ 2025-12-17T21:01:51,960 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,961 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,961 | ^~~~~~~~ 2025-12-17T21:01:51,962 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:448:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,962 448 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,963 | ^~~~~~~~ 2025-12-17T21:01:51,964 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,964 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,965 | ^~~~~~~~ 2025-12-17T21:01:51,965 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:449:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,966 449 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,966 | ^~~~~~~~ 2025-12-17T21:01:51,967 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,967 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,968 | ^~~~~~~~ 2025-12-17T21:01:51,968 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:450:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,969 450 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,969 | ^~~~~~~~ 2025-12-17T21:01:51,969 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,970 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,970 | ^~~~~~~~ 2025-12-17T21:01:51,971 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:522:66: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,971 522 | class container_triclinic_base::iterator_order : public std::iterator 2025-12-17T21:01:51,972 | ^~~~~~~~ 2025-12-17T21:01:51,972 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,973 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,973 | ^~~~~~~~ 2025-12-17T21:01:51,974 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:530:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,974 530 | typedef typename std::iterator::pointer pointer; 2025-12-17T21:01:51,975 | ^~~~~~~~ 2025-12-17T21:01:51,975 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,976 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,977 | ^~~~~~~~ 2025-12-17T21:01:51,977 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:531:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,978 531 | typedef typename std::iterator::reference reference; 2025-12-17T21:01:51,978 | ^~~~~~~~ 2025-12-17T21:01:51,979 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,980 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,980 | ^~~~~~~~ 2025-12-17T21:01:51,981 /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/iter_3d.hh:532:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 2025-12-17T21:01:51,982 532 | typedef typename std::iterator::difference_type difference_type; 2025-12-17T21:01:51,982 | ^~~~~~~~ 2025-12-17T21:01:51,983 /usr/include/c++/12/bits/stl_iterator_base_types.h:127:34: note: declared here 2025-12-17T21:01:51,983 127 | struct _GLIBCXX17_DEPRECATED iterator 2025-12-17T21:01:51,983 | ^~~~~~~~ 2025-12-17T21:01:51,984 In file included from /usr/include/c++/12/vector:70: 2025-12-17T21:01:51,984 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-12-17T21:01:51,985 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2025-12-17T21:01:51,985 439 | vector<_Tp, _Alloc>:: 2025-12-17T21:01:51,986 | ^~~~~~~~~~~~~~~~~~~ 2025-12-17T21:01:51,986 In file included from /usr/include/c++/12/vector:64: 2025-12-17T21:01:51,987 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-17T21:01:51,987 inlined from ‘void voro::unitcell::images(std::vector&, std::vector&)’ at /tmp/pip-wheel-x5w4z_an/mdapy_084ff36ba08d4395a89a1fa424405986/extern/voro++/src/unitcell.cc:147:25: 2025-12-17T21:01:51,988 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2025-12-17T21:01:51,988 1287 | _M_realloc_insert(end(), __x); 2025-12-17T21:01:51,989 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-17T21:01:52,277 [86/86] Linking CXX shared module _voronoi.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,282 *** Installing project into wheel... 2025-12-17T21:01:52,327 -- Install configuration: "Release" 2025-12-17T21:01:52,330 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_neighbor.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,337 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_structure_entropy.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,341 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_voronoi.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,352 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_nepcal.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,361 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_qnepcal.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,370 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_repeat_cell.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,376 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_aabbtree.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,385 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_cluster.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,390 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_spline.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,398 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_cna.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,403 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_polycrystal.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,409 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_ptm.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,423 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_eam.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,430 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_sbo.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,435 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_rdf.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,440 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_sfc.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,445 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_csp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,449 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_wcp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,454 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_strain.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,459 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_fccpft.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,463 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_aja.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,467 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_cnp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,475 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_split.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,479 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_atomtemp.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,485 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_lindemann.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,490 -- Installing: /tmp/tmpfzdoy92k/wheel/platlib/mdapy/_bond_analysis.cpython-311-arm-linux-gnueabihf.so 2025-12-17T21:01:52,499 *** Making wheel... 2025-12-17T21:01:53,474 *** Created mdapy-1.0.0a3-cp311-cp311-linux_armv7l.whl 2025-12-17T21:01:53,543 Building wheel for mdapy (pyproject.toml): finished with status 'done' 2025-12-17T21:01:53,565 Created wheel for mdapy: filename=mdapy-1.0.0a3-cp311-cp311-linux_armv7l.whl size=1535995 sha256=a20c6a7628b77d475aa78bae6a8d3f1776afbc06a460bc3903c5cc91fefc9b98 2025-12-17T21:01:53,566 Stored in directory: /tmp/pip-ephem-wheel-cache-dbwnl30f/wheels/75/c8/92/10df71fabb1427980e64bd8eb4e65795d6704327508b332b9e 2025-12-17T21:01:53,579 Successfully built mdapy 2025-12-17T21:01:53,629 Removed build tracker: '/tmp/pip-build-tracker-15wffrgc'