2025-12-18T11:30:29,240 Created temporary directory: /tmp/pip-ephem-wheel-cache-h0blygwc
2025-12-18T11:30:29,242 Created temporary directory: /tmp/pip-build-tracker-5kdjyhcv
2025-12-18T11:30:29,242 Initialized build tracking at /tmp/pip-build-tracker-5kdjyhcv
2025-12-18T11:30:29,243 Created build tracker: /tmp/pip-build-tracker-5kdjyhcv
2025-12-18T11:30:29,243 Entered build tracker: /tmp/pip-build-tracker-5kdjyhcv
2025-12-18T11:30:29,244 Created temporary directory: /tmp/pip-wheel-qc6cg0vj
2025-12-18T11:30:29,247 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-18T11:30:29,250 Created temporary directory: /tmp/pip-ephem-wheel-cache-9hj87r4t
2025-12-18T11:30:29,272 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-18T11:30:29,275 2 location(s) to search for versions of pmx-biobb:
2025-12-18T11:30:29,275 * https://pypi.org/simple/pmx-biobb/
2025-12-18T11:30:29,275 * https://www.piwheels.org/simple/pmx-biobb/
2025-12-18T11:30:29,276 Fetching project page and analyzing links: https://pypi.org/simple/pmx-biobb/
2025-12-18T11:30:29,277 Getting page https://pypi.org/simple/pmx-biobb/
2025-12-18T11:30:29,278 Found index url https://pypi.org/simple
2025-12-18T11:30:29,485 Fetched page https://pypi.org/simple/pmx-biobb/ as application/vnd.pypi.simple.v1+json
2025-12-18T11:30:29,490   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/ea/0e/652070bd7d0ca56047ee9da48bdce6ad248973b822b5fe7d931c07a93625/pmx_biobb-1.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,491   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,492   Skipping link: 1.0.0 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/c3/e5/f2e9751452ed944cd072d3cde0ec9523f4b3bfbde758a1b325d3d0ee42cf/pmx_biobb-1.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,493   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/5b/2f2f6e34ed256b51485f1313f89aeb9647a2df056fad635dc6c69354a142/pmx_biobb-1.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,494   Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,494   Skipping link: 1.0.1 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/44/5e/69dc9d443dcb657ec4849d483f4e759b6e40192def9d15d46fb85f2e8ba2/pmx_biobb-1.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,495   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/dc/26/88efc470b39ed04650850696ca8d4c1777e1f1788960a41b063c4f9f64cc/pmx_biobb-2.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,496   Found link https://files.pythonhosted.org/packages/32/7c/dd656cd2d785a7b9815e0ca54fb9bec35c258cdc058d9450726e65bc201c/pmx_biobb-2.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 2.0.0
2025-12-18T11:30:29,497   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/73/a2/51564515b8b81b725a8aa81b962e040e66d59ce4637be894cf02315fc403/pmx_biobb-3.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,497   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/e7/93/4fac73a6fe156e0940953662d457f0424e847a9546db1c10a7bbad5d3642/pmx_biobb-3.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,499   Found link https://files.pythonhosted.org/packages/3c/b8/7dcc8b482f02b8ff26aa1a9819fd389f9cc01087954d968e156a073ea4ac/pmx_biobb-3.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.1
2025-12-18T11:30:29,499   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/c4/2a/c00053a2535945c6900b99621be5c40437e939c64f36ea7d14e3bb5febbe/pmx_biobb-3.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,500   Found link https://files.pythonhosted.org/packages/8a/0b/e7b469ecf2b337e713cafe136f826f79709c9940a4d3a1eb00a669657af0/pmx_biobb-3.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.2
2025-12-18T11:30:29,501   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8a/70/3744fd3fd4d13d0fcd04c50740aa9584ba6c5b7eb43e1a4dd65a7c223cf2/pmx_biobb-3.0.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,502   Found link https://files.pythonhosted.org/packages/6f/b2/61607c93aa5d3c34838e44ed7df748137d3b266a06a32b6d521a19ddedb4/pmx_biobb-3.0.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 3.0.3
2025-12-18T11:30:29,502   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/34/3e/e0a91c21ec82ca2108ec1f20c6f9fb0feb3e83b1d9277b2b521b43e77067/pmx_biobb-4.0.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,503   Found link https://files.pythonhosted.org/packages/d3/ee/61a98e8a9a4a1d5ab8ea32a2712cc1dfb3d7326a8404fcbd3347b28fab4d/pmx_biobb-4.0.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.0
2025-12-18T11:30:29,504   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/cf/d3/2cac189bd5b21c71cb79a57bf2f38121a2ecc930294758e3565302de7d21/pmx_biobb-4.0.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,505   Found link https://files.pythonhosted.org/packages/b9/64/0a7b31944dfae299db2a1da0949f82c4843cbc8ee4abb2f2b3f716d38640/pmx_biobb-4.0.1.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.1
2025-12-18T11:30:29,505   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/88/6d/c32f57cf60dce3b6835df798488a8e6980ca6e2865723f9e1c9551a8bff3/pmx_biobb-4.0.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,507   Found link https://files.pythonhosted.org/packages/1e/f1/377ebcaabe3ae496f4e58c434464cc6899d7a1a6287abea0ac19c9a84f38/pmx_biobb-4.0.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.0.2
2025-12-18T11:30:29,507   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/21/d8/92f5da41c0ccee7807122989b44711b075159e3129707c40a469a5333825/pmx_biobb-4.1.2-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,508   Found link https://files.pythonhosted.org/packages/de/e6/7e0419f8305191fb52c09e3f36db33fa8e37e029e6e2d0c361cb384cfefa/pmx_biobb-4.1.2.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.2
2025-12-18T11:30:29,509   Skipping link: No binaries permitted for pmx-biobb: https://files.pythonhosted.org/packages/8f/b7/67894a846ff237417e009dd532d744eff5fd675e98ccb50e27fda4c145e1/pmx_biobb-4.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,510   Found link https://files.pythonhosted.org/packages/ff/3a/d6a0cec96cc00189a683995a26e729c9d09e503129b35192923c46bd93ed/pmx_biobb-4.1.3.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.7), version: 4.1.3
2025-12-18T11:30:29,511   Found link https://files.pythonhosted.org/packages/a8/4e/25bd821ca79c5cf26558617be7b519e15d7a160d0bb3d9b9d6e5e826975e/pmx_biobb-5.2.0.tar.gz (from https://pypi.org/simple/pmx-biobb/) (requires-python:>=3.10), version: 5.2.0
2025-12-18T11:30:29,512 Fetching project page and analyzing links: https://www.piwheels.org/simple/pmx-biobb/
2025-12-18T11:30:29,513 Getting page https://www.piwheels.org/simple/pmx-biobb/
2025-12-18T11:30:29,514 Found index url https://www.piwheels.org/simple
2025-12-18T11:30:29,665 Fetched page https://www.piwheels.org/simple/pmx-biobb/ as text/html
2025-12-18T11:30:29,680   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv6l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,680   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp37-cp37m-linux_armv7l.whl#sha256=49e6d6e858b81a9cb06fd1e8dfb1a6813af3e81f6f471e1473a782a4063ca3eb (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,681   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv6l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,681   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp39-cp39-linux_armv7l.whl#sha256=53bd7ffc22fe4dae9200c2f72b9650e77d4ab7809ecb0219685e7429222e7b43 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,682   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp311-cp311-linux_armv6l.whl#sha256=c8756d69d71e4ca7d72f84df02cf29e97e8b7ed8f41949404774e3ba7accb428 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,683   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.3-cp311-cp311-linux_armv7l.whl#sha256=c8756d69d71e4ca7d72f84df02cf29e97e8b7ed8f41949404774e3ba7accb428 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,683   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv6l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,684   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp37-cp37m-linux_armv7l.whl#sha256=c9442c9129d171b9470330209ab7822af7bdaeaaae306c2c891597b1267bfec5 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,685   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv6l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,685   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.1.2-cp39-cp39-linux_armv7l.whl#sha256=5cfda4f30e6f90d0f14fdd9d401fec01a00d3b528b9cd88614bc3161a158087a (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,686   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv6l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,687   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp37-cp37m-linux_armv7l.whl#sha256=dff92724f2cf8b25319328fe3e99d42581794b289ae551733a6615c659395b84 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,687   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv6l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,688   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.2-cp39-cp39-linux_armv7l.whl#sha256=47ab27371c794d3c80f75be7a95551af23c6e6a52f55acc0bf15aca71c443d0b (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,688   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv6l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,689   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp37-cp37m-linux_armv7l.whl#sha256=4cba66df7056ed44e240f4e96c0a53a26e29aed4edb814b23de779fbc2de2b6e (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,689   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv6l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,690   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp39-cp39-linux_armv7l.whl#sha256=bd751f2807a45f17c0e9676ccda12b6edbbebf475c170e3ec27044838f1d5b82 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,690   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp311-cp311-linux_armv6l.whl#sha256=b0398fae5229f8915a467bfa70ecf4855a9df4be5b25b6846c503634fd819011 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,691   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.1-cp311-cp311-linux_armv7l.whl#sha256=b0398fae5229f8915a467bfa70ecf4855a9df4be5b25b6846c503634fd819011 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,691   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv6l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,692   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp37-cp37m-linux_armv7l.whl#sha256=a27ba6f102f456ee697a94e3336dc27b59746723f1054ffdd4229bc85b007dd1 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,692   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv6l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,693   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp39-cp39-linux_armv7l.whl#sha256=62a965b247bcd5d3d8de872fe3c431c183e1e627d6e3103ae0fde87ff9df3ca3 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,694   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp311-cp311-linux_armv6l.whl#sha256=bef6e7259c029c9892522e445c7f1205d39811f71f9a90bf16770566dea86f31 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,695   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-4.0.0-cp311-cp311-linux_armv7l.whl#sha256=bef6e7259c029c9892522e445c7f1205d39811f71f9a90bf16770566dea86f31 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,695   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv6l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,695   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp37-cp37m-linux_armv7l.whl#sha256=fc8fbd57b0cb8610bb25bffb894b86ccd8e7585d21e9449ddd6574a630f9b239 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,696   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv6l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,696   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp39-cp39-linux_armv7l.whl#sha256=40a70608dd4bf4f418963f9f6cea5d67ebf81a1a19341a6326b8df270f390f13 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,697   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv6l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,697   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.3-cp311-cp311-linux_armv7l.whl#sha256=7e73de5f2261d43b7ce076f78698fe893948d8d7cc9c88c7ee3def9a035a4e68 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,698   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv6l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,699   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp37-cp37m-linux_armv7l.whl#sha256=d9a0e387d6642853c6a15e0775ee01c0d16b83bc10043722ce37d48e97775ea0 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,699   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv6l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,700   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.2-cp39-cp39-linux_armv7l.whl#sha256=74fd458e035071ba11d9e1399e02fc5bb4eb6423558ebf830a74400b03b09d21 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,701   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv6l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,701   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp37-cp37m-linux_armv7l.whl#sha256=07b4c88db1007c2b4048164c399202c430d8a7a8cc06ba72b508c989771d479d (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,702   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv6l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,703   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp39-cp39-linux_armv7l.whl#sha256=ee00c4200b2d58c9f38a7fd4e90bf138cd1a944485cce1bdbcb00cff45c8a842 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,703   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv6l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,704   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-3.0.1-cp311-cp311-linux_armv7l.whl#sha256=c2f9b6cb2cb584c68d74d0ee760d79c627644692dc8371d1189026b09a9dc068 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,704   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,705   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp37-cp37m-linux_armv7l.whl#sha256=7ed553f6de880f8fb39de2e8b4d6ea35ed8208bf52b08e62d1bcabe12bce2581 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,705   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,706   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=49cc38d8b7531ef391784e7e40fe37f1e923ef8df1e325feb77291ce2ebbf2f9 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:>=3.7)
2025-12-18T11:30:29,706   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv6l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,707   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.1-cp37-cp37m-linux_armv7l.whl#sha256=06669bc75e212029d4eb66faec74a5eea1198968e9440e0b77c050a0ae585625 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,708   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv6l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,708   Skipping link: No binaries permitted for pmx-biobb: https://archive1.piwheels.org/simple/pmx-biobb/pmx_biobb-1.0.0-cp37-cp37m-linux_armv7l.whl#sha256=6658576cd352d7f064666a210bfcbbf197410e312cbbdba101d4f6e4f6e9f868 (from https://www.piwheels.org/simple/pmx-biobb/) (requires-python:==3.7.*)
2025-12-18T11:30:29,709 Skipping link: not a file: https://www.piwheels.org/simple/pmx-biobb/
2025-12-18T11:30:29,710 Skipping link: not a file: https://pypi.org/simple/pmx-biobb/
2025-12-18T11:30:29,730 Given no hashes to check 1 links for project 'pmx-biobb': discarding no candidates
2025-12-18T11:30:29,749 Collecting pmx-biobb==5.2.0
2025-12-18T11:30:29,751   Created temporary directory: /tmp/pip-unpack-l2fy7jkb
2025-12-18T11:30:29,982   Downloading pmx_biobb-5.2.0.tar.gz (5.2 MB)
2025-12-18T11:30:34,521   Added pmx-biobb==5.2.0 from https://files.pythonhosted.org/packages/a8/4e/25bd821ca79c5cf26558617be7b519e15d7a160d0bb3d9b9d6e5e826975e/pmx_biobb-5.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-5kdjyhcv'
2025-12-18T11:30:34,523   Running setup.py (path:/tmp/pip-wheel-qc6cg0vj/pmx-biobb_2dc432d5b03846bf920d9bbea69ee261/setup.py) egg_info for package pmx-biobb
2025-12-18T11:30:34,524   Created temporary directory: /tmp/pip-pip-egg-info-9qc_7a7v
2025-12-18T11:30:34,525   Preparing metadata (setup.py): started
2025-12-18T11:30:34,526   Running command python setup.py egg_info
2025-12-18T11:30:35,152   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-12-18T11:30:35,152     warnings.warn(msg)
2025-12-18T11:30:35,483   running egg_info
2025-12-18T11:30:35,511   creating /tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info
2025-12-18T11:30:35,512   writing /tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/PKG-INFO
2025-12-18T11:30:35,516   writing dependency_links to /tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/dependency_links.txt
2025-12-18T11:30:35,517   writing entry points to /tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/entry_points.txt
2025-12-18T11:30:35,519   writing requirements to /tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/requires.txt
2025-12-18T11:30:35,520   writing top-level names to /tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/top_level.txt
2025-12-18T11:30:35,521   writing manifest file '/tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/SOURCES.txt'
2025-12-18T11:30:35,608   reading manifest file '/tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/SOURCES.txt'
2025-12-18T11:30:35,609   reading manifest template 'MANIFEST.in'
2025-12-18T11:30:35,632   adding license file 'LICENSE'
2025-12-18T11:30:35,644   writing manifest file '/tmp/pip-pip-egg-info-9qc_7a7v/pmx_biobb.egg-info/SOURCES.txt'
2025-12-18T11:30:35,756   Preparing metadata (setup.py): finished with status 'done'
2025-12-18T11:30:35,760   Source in /tmp/pip-wheel-qc6cg0vj/pmx-biobb_2dc432d5b03846bf920d9bbea69ee261 has version 5.2.0, which satisfies requirement pmx-biobb==5.2.0 from https://files.pythonhosted.org/packages/a8/4e/25bd821ca79c5cf26558617be7b519e15d7a160d0bb3d9b9d6e5e826975e/pmx_biobb-5.2.0.tar.gz
2025-12-18T11:30:35,761   Removed pmx-biobb==5.2.0 from https://files.pythonhosted.org/packages/a8/4e/25bd821ca79c5cf26558617be7b519e15d7a160d0bb3d9b9d6e5e826975e/pmx_biobb-5.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-5kdjyhcv'
2025-12-18T11:30:35,767 Created temporary directory: /tmp/pip-unpack-y0q97pwl
2025-12-18T11:30:35,768 Building wheels for collected packages: pmx-biobb
2025-12-18T11:30:35,772   Created temporary directory: /tmp/pip-wheel-1tnun5ce
2025-12-18T11:30:35,773   Building wheel for pmx-biobb (setup.py): started
2025-12-18T11:30:35,774   Destination directory: /tmp/pip-wheel-1tnun5ce
2025-12-18T11:30:35,774   Running command python setup.py bdist_wheel
2025-12-18T11:30:36,327   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
2025-12-18T11:30:36,328     warnings.warn(msg)
2025-12-18T11:30:36,624   running bdist_wheel
2025-12-18T11:30:36,758   running build
2025-12-18T11:30:36,758   running build_py
2025-12-18T11:30:36,762   creating build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,764   copying src/pmx/utils.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,767   copying src/pmx/mutdb.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,769   copying src/pmx/jobscript.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,771   copying src/pmx/forcefield.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,775   copying src/pmx/_version.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,776   copying src/pmx/rosetta.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,779   copying src/pmx/analysis.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,781   copying src/pmx/library.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,785   copying src/pmx/model.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,788   copying src/pmx/geometry.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,790   copying src/pmx/xdrfile.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,796   copying src/pmx/summary.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,798   copying src/pmx/ffparser.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,801   copying src/pmx/ligand_alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,805   copying src/pmx/options.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,807   copying src/pmx/parser.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,809   copying src/pmx/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,812   copying src/pmx/alchemy.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,816   copying src/pmx/gmx.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,819   copying src/pmx/AbsRestraints.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,821   copying src/pmx/ndx.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,824   copying src/pmx/resselection.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,826   copying src/pmx/rosetta_analyze.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,828   copying src/pmx/rotamer.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,830   copying src/pmx/molecule.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,833   copying src/pmx/chain.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,836   copying src/pmx/estimators.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,838   copying src/pmx/atomselection.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,841   copying src/pmx/builder.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,843   copying src/pmx/atom.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,846   copying src/pmx/xtc.py -> build/lib.linux-armv7l-cpython-311/pmx
2025-12-18T11:30:36,847   running egg_info
2025-12-18T11:30:36,876   writing src/pmx_biobb.egg-info/PKG-INFO
2025-12-18T11:30:36,879   writing dependency_links to src/pmx_biobb.egg-info/dependency_links.txt
2025-12-18T11:30:36,880   writing entry points to src/pmx_biobb.egg-info/entry_points.txt
2025-12-18T11:30:36,882   writing requirements to src/pmx_biobb.egg-info/requires.txt
2025-12-18T11:30:36,883   writing top-level names to src/pmx_biobb.egg-info/top_level.txt
2025-12-18T11:30:36,916   reading manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2025-12-18T11:30:36,934   reading manifest template 'MANIFEST.in'
2025-12-18T11:30:36,952   adding license file 'LICENSE'
2025-12-18T11:30:36,968   writing manifest file 'src/pmx_biobb.egg-info/SOURCES.txt'
2025-12-18T11:30:36,971   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pmx.data' is absent from the `packages` configuration.
2025-12-18T11:30:36,971   !!

2025-12-18T11:30:36,973           ********************************************************************************
2025-12-18T11:30:36,973           ############################
2025-12-18T11:30:36,974           # Package would be ignored #
2025-12-18T11:30:36,974           ############################
2025-12-18T11:30:36,974           Python recognizes 'pmx.data' as an importable package[^1],
2025-12-18T11:30:36,975           but it is absent from setuptools' `packages` configuration.

2025-12-18T11:30:36,976           This leads to an ambiguous overall configuration. If you want to distribute this
2025-12-18T11:30:36,976           package, please make sure that 'pmx.data' is explicitly added
2025-12-18T11:30:36,976           to the `packages` configuration field.

2025-12-18T11:30:36,977           Alternatively, you can also rely on setuptools' discovery methods
2025-12-18T11:30:36,978           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-12-18T11:30:36,978           instead of `find_packages(...)`/`find:`).

2025-12-18T11:30:36,979           You can read more about "package discovery" on setuptools documentation page:

2025-12-18T11:30:36,980           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-12-18T11:30:36,981           If you don't want 'pmx.data' to be distributed and are
2025-12-18T11:30:36,981           already explicitly excluding 'pmx.data' via
2025-12-18T11:30:36,982           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-12-18T11:30:36,982           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-12-18T11:30:36,983           combination with a more fine grained `package-data` configuration.

2025-12-18T11:30:36,984           You can read more about "package data files" on setuptools documentation page:

2025-12-18T11:30:36,985           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-12-18T11:30:36,986           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-12-18T11:30:36,987                 even if it does not contain any `.py` files.
2025-12-18T11:30:36,987                 On the other hand, currently there is no concept of package data
2025-12-18T11:30:36,988                 directory, all directories are treated like packages.
2025-12-18T11:30:36,988           ********************************************************************************

2025-12-18T11:30:36,989   !!
2025-12-18T11:30:36,990     check.warn(importable)
2025-12-18T11:30:36,990   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pmx.data.mutff' is absent from the `packages` configuration.
2025-12-18T11:30:36,991   !!

2025-12-18T11:30:36,992           ********************************************************************************
2025-12-18T11:30:36,992           ############################
2025-12-18T11:30:36,993           # Package would be ignored #
2025-12-18T11:30:36,993           ############################
2025-12-18T11:30:36,994           Python recognizes 'pmx.data.mutff' as an importable package[^1],
2025-12-18T11:30:36,994           but it is absent from setuptools' `packages` configuration.

2025-12-18T11:30:36,995           This leads to an ambiguous overall configuration. If you want to distribute this
2025-12-18T11:30:36,996           package, please make sure that 'pmx.data.mutff' is explicitly added
2025-12-18T11:30:36,996           to the `packages` configuration field.

2025-12-18T11:30:36,997           Alternatively, you can also rely on setuptools' discovery methods
2025-12-18T11:30:36,998           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-12-18T11:30:36,999           instead of `find_packages(...)`/`find:`).

2025-12-18T11:30:37,000           You can read more about "package discovery" on setuptools documentation page:

2025-12-18T11:30:37,001           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-12-18T11:30:37,002           If you don't want 'pmx.data.mutff' to be distributed and are
2025-12-18T11:30:37,002           already explicitly excluding 'pmx.data.mutff' via
2025-12-18T11:30:37,003           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-12-18T11:30:37,003           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-12-18T11:30:37,003           combination with a more fine grained `package-data` configuration.

2025-12-18T11:30:37,004           You can read more about "package data files" on setuptools documentation page:

2025-12-18T11:30:37,005           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-12-18T11:30:37,006           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-12-18T11:30:37,007                 even if it does not contain any `.py` files.
2025-12-18T11:30:37,007                 On the other hand, currently there is no concept of package data
2025-12-18T11:30:37,008                 directory, all directories are treated like packages.
2025-12-18T11:30:37,010           ********************************************************************************

2025-12-18T11:30:37,011   !!
2025-12-18T11:30:37,012     check.warn(importable)
2025-12-18T11:30:37,012   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pmx.extensions.pmx' is absent from the `packages` configuration.
2025-12-18T11:30:37,013   !!

2025-12-18T11:30:37,014           ********************************************************************************
2025-12-18T11:30:37,014           ############################
2025-12-18T11:30:37,015           # Package would be ignored #
2025-12-18T11:30:37,016           ############################
2025-12-18T11:30:37,016           Python recognizes 'pmx.extensions.pmx' as an importable package[^1],
2025-12-18T11:30:37,017           but it is absent from setuptools' `packages` configuration.

2025-12-18T11:30:37,018           This leads to an ambiguous overall configuration. If you want to distribute this
2025-12-18T11:30:37,018           package, please make sure that 'pmx.extensions.pmx' is explicitly added
2025-12-18T11:30:37,019           to the `packages` configuration field.

2025-12-18T11:30:37,020           Alternatively, you can also rely on setuptools' discovery methods
2025-12-18T11:30:37,021           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-12-18T11:30:37,021           instead of `find_packages(...)`/`find:`).

2025-12-18T11:30:37,022           You can read more about "package discovery" on setuptools documentation page:

2025-12-18T11:30:37,024           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-12-18T11:30:37,025           If you don't want 'pmx.extensions.pmx' to be distributed and are
2025-12-18T11:30:37,025           already explicitly excluding 'pmx.extensions.pmx' via
2025-12-18T11:30:37,026           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-12-18T11:30:37,026           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-12-18T11:30:37,027           combination with a more fine grained `package-data` configuration.

2025-12-18T11:30:37,028           You can read more about "package data files" on setuptools documentation page:

2025-12-18T11:30:37,029           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-12-18T11:30:37,031           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-12-18T11:30:37,031                 even if it does not contain any `.py` files.
2025-12-18T11:30:37,032                 On the other hand, currently there is no concept of package data
2025-12-18T11:30:37,033                 directory, all directories are treated like packages.
2025-12-18T11:30:37,033           ********************************************************************************

2025-12-18T11:30:37,035   !!
2025-12-18T11:30:37,035     check.warn(importable)
2025-12-18T11:30:37,036   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pmx.extensions.xdr' is absent from the `packages` configuration.
2025-12-18T11:30:37,036   !!

2025-12-18T11:30:37,037           ********************************************************************************
2025-12-18T11:30:37,037           ############################
2025-12-18T11:30:37,038           # Package would be ignored #
2025-12-18T11:30:37,038           ############################
2025-12-18T11:30:37,038           Python recognizes 'pmx.extensions.xdr' as an importable package[^1],
2025-12-18T11:30:37,039           but it is absent from setuptools' `packages` configuration.

2025-12-18T11:30:37,040           This leads to an ambiguous overall configuration. If you want to distribute this
2025-12-18T11:30:37,040           package, please make sure that 'pmx.extensions.xdr' is explicitly added
2025-12-18T11:30:37,041           to the `packages` configuration field.

2025-12-18T11:30:37,042           Alternatively, you can also rely on setuptools' discovery methods
2025-12-18T11:30:37,042           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-12-18T11:30:37,042           instead of `find_packages(...)`/`find:`).

2025-12-18T11:30:37,043           You can read more about "package discovery" on setuptools documentation page:

2025-12-18T11:30:37,044           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-12-18T11:30:37,045           If you don't want 'pmx.extensions.xdr' to be distributed and are
2025-12-18T11:30:37,046           already explicitly excluding 'pmx.extensions.xdr' via
2025-12-18T11:30:37,046           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-12-18T11:30:37,047           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-12-18T11:30:37,047           combination with a more fine grained `package-data` configuration.

2025-12-18T11:30:37,048           You can read more about "package data files" on setuptools documentation page:

2025-12-18T11:30:37,049           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-12-18T11:30:37,051           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-12-18T11:30:37,052                 even if it does not contain any `.py` files.
2025-12-18T11:30:37,052                 On the other hand, currently there is no concept of package data
2025-12-18T11:30:37,053                 directory, all directories are treated like packages.
2025-12-18T11:30:37,053           ********************************************************************************

2025-12-18T11:30:37,055   !!
2025-12-18T11:30:37,055     check.warn(importable)
2025-12-18T11:30:37,056   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pmx.rosetta_example' is absent from the `packages` configuration.
2025-12-18T11:30:37,056   !!

2025-12-18T11:30:37,057           ********************************************************************************
2025-12-18T11:30:37,058           ############################
2025-12-18T11:30:37,058           # Package would be ignored #
2025-12-18T11:30:37,059           ############################
2025-12-18T11:30:37,059           Python recognizes 'pmx.rosetta_example' as an importable package[^1],
2025-12-18T11:30:37,060           but it is absent from setuptools' `packages` configuration.

2025-12-18T11:30:37,061           This leads to an ambiguous overall configuration. If you want to distribute this
2025-12-18T11:30:37,062           package, please make sure that 'pmx.rosetta_example' is explicitly added
2025-12-18T11:30:37,062           to the `packages` configuration field.

2025-12-18T11:30:37,064           Alternatively, you can also rely on setuptools' discovery methods
2025-12-18T11:30:37,064           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-12-18T11:30:37,065           instead of `find_packages(...)`/`find:`).

2025-12-18T11:30:37,066           You can read more about "package discovery" on setuptools documentation page:

2025-12-18T11:30:37,067           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-12-18T11:30:37,068           If you don't want 'pmx.rosetta_example' to be distributed and are
2025-12-18T11:30:37,068           already explicitly excluding 'pmx.rosetta_example' via
2025-12-18T11:30:37,069           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-12-18T11:30:37,069           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-12-18T11:30:37,069           combination with a more fine grained `package-data` configuration.

2025-12-18T11:30:37,070           You can read more about "package data files" on setuptools documentation page:

2025-12-18T11:30:37,071           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-12-18T11:30:37,073           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-12-18T11:30:37,073                 even if it does not contain any `.py` files.
2025-12-18T11:30:37,074                 On the other hand, currently there is no concept of package data
2025-12-18T11:30:37,074                 directory, all directories are treated like packages.
2025-12-18T11:30:37,075           ********************************************************************************

2025-12-18T11:30:37,076   !!
2025-12-18T11:30:37,076     check.warn(importable)
2025-12-18T11:30:37,077   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pmx.scripts' is absent from the `packages` configuration.
2025-12-18T11:30:37,077   !!

2025-12-18T11:30:37,078           ********************************************************************************
2025-12-18T11:30:37,079           ############################
2025-12-18T11:30:37,080           # Package would be ignored #
2025-12-18T11:30:37,080           ############################
2025-12-18T11:30:37,081           Python recognizes 'pmx.scripts' as an importable package[^1],
2025-12-18T11:30:37,081           but it is absent from setuptools' `packages` configuration.

2025-12-18T11:30:37,082           This leads to an ambiguous overall configuration. If you want to distribute this
2025-12-18T11:30:37,083           package, please make sure that 'pmx.scripts' is explicitly added
2025-12-18T11:30:37,083           to the `packages` configuration field.

2025-12-18T11:30:37,084           Alternatively, you can also rely on setuptools' discovery methods
2025-12-18T11:30:37,107           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-12-18T11:30:37,115           instead of `find_packages(...)`/`find:`).

2025-12-18T11:30:37,209           You can read more about "package discovery" on setuptools documentation page:

2025-12-18T11:30:37,299           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-12-18T11:30:37,307           If you don't want 'pmx.scripts' to be distributed and are
2025-12-18T11:30:37,314           already explicitly excluding 'pmx.scripts' via
2025-12-18T11:30:37,315           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-12-18T11:30:37,318           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-12-18T11:30:37,321           combination with a more fine grained `package-data` configuration.

2025-12-18T11:30:37,332           You can read more about "package data files" on setuptools documentation page:

2025-12-18T11:30:37,396           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-12-18T11:30:37,484           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-12-18T11:30:37,485                 even if it does not contain any `.py` files.
2025-12-18T11:30:37,485                 On the other hand, currently there is no concept of package data
2025-12-18T11:30:37,486                 directory, all directories are treated like packages.
2025-12-18T11:30:37,486           ********************************************************************************

2025-12-18T11:30:37,487   !!
2025-12-18T11:30:37,487     check.warn(importable)
2025-12-18T11:30:37,488   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'pmx.scripts.icolos_entrypoints' is absent from the `packages` configuration.
2025-12-18T11:30:37,488   !!

2025-12-18T11:30:37,489           ********************************************************************************
2025-12-18T11:30:37,489           ############################
2025-12-18T11:30:37,489           # Package would be ignored #
2025-12-18T11:30:37,490           ############################
2025-12-18T11:30:37,490           Python recognizes 'pmx.scripts.icolos_entrypoints' as an importable package[^1],
2025-12-18T11:30:37,490           but it is absent from setuptools' `packages` configuration.

2025-12-18T11:30:37,491           This leads to an ambiguous overall configuration. If you want to distribute this
2025-12-18T11:30:37,492           package, please make sure that 'pmx.scripts.icolos_entrypoints' is explicitly added
2025-12-18T11:30:37,492           to the `packages` configuration field.

2025-12-18T11:30:37,511           Alternatively, you can also rely on setuptools' discovery methods
2025-12-18T11:30:37,522           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2025-12-18T11:30:37,531           instead of `find_packages(...)`/`find:`).

2025-12-18T11:30:37,558           You can read more about "package discovery" on setuptools documentation page:

2025-12-18T11:30:37,613           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2025-12-18T11:30:37,651           If you don't want 'pmx.scripts.icolos_entrypoints' to be distributed and are
2025-12-18T11:30:37,674           already explicitly excluding 'pmx.scripts.icolos_entrypoints' via
2025-12-18T11:30:37,680           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2025-12-18T11:30:37,681           you can try to use `exclude_package_data`, or `include-package-data=False` in
2025-12-18T11:30:37,681           combination with a more fine grained `package-data` configuration.

2025-12-18T11:30:37,682           You can read more about "package data files" on setuptools documentation page:

2025-12-18T11:30:37,684           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2025-12-18T11:30:37,685           [^1]: For Python, any directory (with suitable naming) can be imported,
2025-12-18T11:30:37,686                 even if it does not contain any `.py` files.
2025-12-18T11:30:37,686                 On the other hand, currently there is no concept of package data
2025-12-18T11:30:37,687                 directory, all directories are treated like packages.
2025-12-18T11:30:37,687           ********************************************************************************

2025-12-18T11:30:37,703   !!
2025-12-18T11:30:37,715     check.warn(importable)
2025-12-18T11:30:37,725   creating build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,769   copying src/pmx/data/aminoacids.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,838   copying src/pmx/data/bbdep.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,871   copying src/pmx/data/blosum62_new.mat -> build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,874   copying src/pmx/data/bp.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,881   copying src/pmx/data/bp_amber.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,889   copying src/pmx/data/bp_charmm.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,897   copying src/pmx/data/rna.pkl -> build/lib.linux-armv7l-cpython-311/pmx/data
2025-12-18T11:30:37,902   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,903   copying src/pmx/data/mutff/atommass.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,906   copying src/pmx/data/mutff/elements.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,908   copying src/pmx/data/mutff/residuetypes.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,911   copying src/pmx/data/mutff/spc216.gro -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,915   copying src/pmx/data/mutff/specbond.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,917   copying src/pmx/data/mutff/vdwradii.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,919   copying src/pmx/data/mutff/xlateat.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff
2025-12-18T11:30:37,922   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,923   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,925   copying src/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,928   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,931   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,933   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,936   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,939   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,941   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,945   copying src/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,948   copying src/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,950   copying src/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,953   copying src/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,955   copying src/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,957   copying src/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,961   copying src/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,965   copying src/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,968   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,970   copying src/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,972   copying src/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,975   copying src/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:37,977   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,023   copying src/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,043   copying src/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,045   copying src/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,047   copying src/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,049   copying src/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,052   copying src/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,054   copying src/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,056   copying src/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,058   copying src/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,060   copying src/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,062   copying src/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,064   copying src/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,066   copying src/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:38,068   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,069   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,073   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,075   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,077   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,079   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,082   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,084   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,088   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,091   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,093   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,097   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,118   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,121   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,123   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,125   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,127   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,130   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,133   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,136   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,139   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,141   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,144   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,146   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,149   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,156   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,161   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,164   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,166   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,169   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,171   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,173   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,176   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,179   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,181   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,183   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,185   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,187   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,189   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,192   copying src/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:38,193   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,194   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,197   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,199   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,201   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,203   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,206   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,210   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,212   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,215   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,218   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,247   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,250   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,252   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,255   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,257   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,260   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,263   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,266   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,268   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,270   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,272   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,274   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,276   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,283   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,287   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,290   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,293   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,295   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,297   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,299   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,302   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,304   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,306   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,308   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,311   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,313   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,315   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,317   copying src/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:38,319   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,320   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,323   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,325   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,328   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,330   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,332   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,336   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,338   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,341   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,343   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,345   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,347   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,350   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,353   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,356   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,358   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,360   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,362   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,365   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,416   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,439   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,441   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,444   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,446   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,449   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,451   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,453   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,455   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,457   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,460   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,462   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,464   copying src/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:38,466   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,467   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,469   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,471   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,474   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,476   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,478   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,481   copying src/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,484   copying src/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,487   copying src/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,490   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,492   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,494   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,497   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,499   copying src/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,502   copying src/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,505   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,509   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,512   copying src/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,517   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,520   copying src/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,522   copying src/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,524   copying src/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,526   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,528   copying src/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,531   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,533   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,575   copying src/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,598   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,600   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,602   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,605   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,607   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,609   copying src/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,612   copying src/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,615   copying src/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,617   copying src/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,619   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,622   copying src/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,624   copying src/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,627   copying src/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,629   copying src/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:38,631   creating build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,633   copying src/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,636   copying src/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,641   copying src/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,661   copying src/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,691   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,694   copying src/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,696   copying src/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,698   copying src/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,700   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,703   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,705   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,708   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,710   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,712   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,739   copying src/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,742   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,744   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,796   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,817   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,824   copying src/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,829   copying src/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,832   copying src/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,834   copying src/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,837   copying src/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,839   copying src/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,842   copying src/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:38,844   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,846   copying src/pmx/extensions/pmx/Energy.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,849   copying src/pmx/extensions/pmx/Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,852   copying src/pmx/extensions/pmx/Geometry.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,856   copying src/pmx/extensions/pmx/cpp_test.cpp -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,859   copying src/pmx/extensions/pmx/init.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,861   copying src/pmx/extensions/pmx/pmx.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,864   copying src/pmx/extensions/pmx/wrap_Geometry.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx
2025-12-18T11:30:38,867   creating build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,869   copying src/pmx/extensions/xdr/trr2xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,872   copying src/pmx/extensions/xdr/xdrfile.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,876   copying src/pmx/extensions/xdr/xdrfile.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,880   copying src/pmx/extensions/xdr/xdrfile_c_test.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,883   copying src/pmx/extensions/xdr/xdrfile_trr.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,886   copying src/pmx/extensions/xdr/xdrfile_trr.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,889   copying src/pmx/extensions/xdr/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,891   copying src/pmx/extensions/xdr/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr
2025-12-18T11:30:38,894   creating build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,895   copying src/pmx/rosetta_example/README -> build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,898   copying src/pmx/rosetta_example/analyze.py -> build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,900   copying src/pmx/rosetta_example/mut.dat -> build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,902   copying src/pmx/rosetta_example/plot_results.ipynb -> build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,909   copying src/pmx/rosetta_example/prot_zn.pdb -> build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,922   copying src/pmx/rosetta_example/rosetta_prepare.ipynb -> build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,924   copying src/pmx/rosetta_example/submit_jobscripts.py -> build/lib.linux-armv7l-cpython-311/pmx/rosetta_example
2025-12-18T11:30:38,927   creating build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,928   copying src/pmx/scripts/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,930   copying src/pmx/scripts/analyze_dhdl.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,934   copying src/pmx/scripts/atomMapping.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,937   copying src/pmx/scripts/build_cyclic_top.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,940   copying src/pmx/scripts/cli.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,943   copying src/pmx/scripts/fill_cgenff_itp.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,946   copying src/pmx/scripts/fix_residue_names.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,950   copying src/pmx/scripts/gen_abs_restraints.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,952   copying src/pmx/scripts/generate_hybrid_residue.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,957   copying src/pmx/scripts/generate_hybrid_topology.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,960   copying src/pmx/scripts/hydrogen_atom_renaming.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,963   copying src/pmx/scripts/ligandHybrid.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,966   copying src/pmx/scripts/make_double_box.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,969   copying src/pmx/scripts/md_setup.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,973   copying src/pmx/scripts/mutate.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,978   copying src/pmx/scripts/parameterize_ligands.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,983   copying src/pmx/scripts/prepare_crooks_runs.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,987   copying src/pmx/scripts/repartition_mass.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,991   copying src/pmx/scripts/set_gmxlib.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,994   copying src/pmx/scripts/setup_abfe.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts
2025-12-18T11:30:38,998   creating build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints
2025-12-18T11:30:39,000   copying src/pmx/scripts/icolos_entrypoints/__init__.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints
2025-12-18T11:30:39,003   copying src/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints
2025-12-18T11:30:39,009   UPDATING build/lib.linux-armv7l-cpython-311/pmx/_version.py
2025-12-18T11:30:39,010   set build/lib.linux-armv7l-cpython-311/pmx/_version.py to '5.2.0'
2025-12-18T11:30:39,011   running build_ext
2025-12-18T11:30:39,668   building 'pmx._pmx' extension
2025-12-18T11:30:39,669   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx
2025-12-18T11:30:39,672   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Energy.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o
2025-12-18T11:30:40,770   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o
2025-12-18T11:30:41,168   src/pmx/extensions/pmx/Geometry.c: In function ‘spread_atoms_on_grid’:
2025-12-18T11:30:41,168   src/pmx/extensions/pmx/Geometry.c:527:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:41,169     527 |   int nx, ny, nz;
2025-12-18T11:30:41,170         |               ^~
2025-12-18T11:30:41,170   src/pmx/extensions/pmx/Geometry.c: In function ‘search_neighbors’:
2025-12-18T11:30:41,171   src/pmx/extensions/pmx/Geometry.c:586:15: warning: variable ‘nz’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:41,172     586 |   int nx, ny, nz;
2025-12-18T11:30:41,173         |               ^~
2025-12-18T11:30:43,049   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/init.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o
2025-12-18T11:30:43,480   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/pmx -I/usr/include/python3.11 -c src/pmx/extensions/pmx/wrap_Geometry.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o
2025-12-18T11:30:45,250   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Energy.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/Geometry.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/init.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/pmx/wrap_Geometry.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so
2025-12-18T11:30:45,378   building 'pmx._xdrio' extension
2025-12-18T11:30:45,379   creating build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr
2025-12-18T11:30:45,380   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o
2025-12-18T11:30:45,420   src/pmx/extensions/xdr/xdrfile.c:5:2: warning: "/*" within comment [-Wcomment]
2025-12-18T11:30:45,421       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-12-18T11:30:45,421         |
2025-12-18T11:30:45,515   In file included from src/pmx/extensions/xdr/xdrfile.c:60:
2025-12-18T11:30:45,516   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-12-18T11:30:45,516       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-12-18T11:30:45,517         |
2025-12-18T11:30:45,525   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofint’:
2025-12-18T11:30:45,526   src/pmx/extensions/xdr/xdrfile.c:499:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,527     499 |     while (size >= num && num_of_bits < 32)
2025-12-18T11:30:45,527         |                 ^~
2025-12-18T11:30:45,528   src/pmx/extensions/xdr/xdrfile.c: In function ‘sizeofints’:
2025-12-18T11:30:45,529   src/pmx/extensions/xdr/xdrfile.c:545:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,530     545 |     while (bytes[num_of_bytes] >= num)
2025-12-18T11:30:45,531         |                                ^~
2025-12-18T11:30:45,532   src/pmx/extensions/xdr/xdrfile.c: In function ‘encodeints’:
2025-12-18T11:30:45,533   src/pmx/extensions/xdr/xdrfile.c:654:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,534     654 |     if (num_of_bits >= num_of_bytes * 8)
2025-12-18T11:30:45,535         |                     ^~
2025-12-18T11:30:45,535   src/pmx/extensions/xdr/xdrfile.c:656:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,536     656 |                 for (i = 0; i < num_of_bytes; i++)
2025-12-18T11:30:45,536         |                               ^
2025-12-18T11:30:45,537   src/pmx/extensions/xdr/xdrfile.c:664:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,538     664 |                 for (i = 0; i < num_of_bytes-1; i++)
2025-12-18T11:30:45,538         |                               ^
2025-12-18T11:30:45,539   src/pmx/extensions/xdr/xdrfile.c: In function ‘decodebits’:
2025-12-18T11:30:45,540   src/pmx/extensions/xdr/xdrfile.c:704:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,541     704 |                 if (lastbits < num_of_bits)
2025-12-18T11:30:45,541         |                              ^
2025-12-18T11:30:45,544   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2025-12-18T11:30:45,546   src/pmx/extensions/xdr/xdrfile.c:814:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,546     814 |         if(size3>xfp->buf1size)
2025-12-18T11:30:45,547         |                 ^
2025-12-18T11:30:45,549   src/pmx/extensions/xdr/xdrfile.c:866:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,550     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,550         |                          ^
2025-12-18T11:30:45,551   src/pmx/extensions/xdr/xdrfile.c:866:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-12-18T11:30:45,552     866 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,552         |                                            ^~~
2025-12-18T11:30:45,556   src/pmx/extensions/xdr/xdrfile.c:792:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:45,556     792 |         int smallnum, smaller, larger, i, is_smaller, run;
2025-12-18T11:30:45,557         |                                ^~~~~~
2025-12-18T11:30:45,557   src/pmx/extensions/xdr/xdrfile.c:789:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:45,558     789 |         int smallidx, minidx, maxidx;
2025-12-18T11:30:45,558         |                       ^~~~~~
2025-12-18T11:30:45,559   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2025-12-18T11:30:45,561   src/pmx/extensions/xdr/xdrfile.c:1010:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,561    1010 |         if(size3>xfp->buf1size)
2025-12-18T11:30:45,562         |                 ^
2025-12-18T11:30:45,568   src/pmx/extensions/xdr/xdrfile.c:1133:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,568    1133 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2025-12-18T11:30:45,569         |                         ^
2025-12-18T11:30:45,570   src/pmx/extensions/xdr/xdrfile.c:1139:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,571    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,571         |                          ^
2025-12-18T11:30:45,573   src/pmx/extensions/xdr/xdrfile.c:1139:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-12-18T11:30:45,573    1139 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,574         |                                            ^~~
2025-12-18T11:30:45,578   src/pmx/extensions/xdr/xdrfile.c:1271:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,579    1271 |         if(tmp==(unsigned int)buf2[0])
2025-12-18T11:30:45,579         |               ^~
2025-12-18T11:30:45,580   src/pmx/extensions/xdr/xdrfile.c:999:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:45,581     999 |         int errval=1;
2025-12-18T11:30:45,582         |             ^~~~~~
2025-12-18T11:30:45,583   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2025-12-18T11:30:45,585   src/pmx/extensions/xdr/xdrfile.c:1311:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,585    1311 |         if(size3>xfp->buf1size)
2025-12-18T11:30:45,586         |                 ^
2025-12-18T11:30:45,589   src/pmx/extensions/xdr/xdrfile.c:1366:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,590    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,590         |                          ^
2025-12-18T11:30:45,592   src/pmx/extensions/xdr/xdrfile.c:1366:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-12-18T11:30:45,592    1366 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,593         |                                            ^~~
2025-12-18T11:30:45,597   src/pmx/extensions/xdr/xdrfile.c:1288:32: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:45,598    1288 |         int smallnum, smaller, larger, i, is_smaller, run;
2025-12-18T11:30:45,598         |                                ^~~~~~
2025-12-18T11:30:45,599   src/pmx/extensions/xdr/xdrfile.c:1285:23: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:45,600    1285 |         int smallidx, minidx, maxidx;
2025-12-18T11:30:45,600         |                       ^~~~~~
2025-12-18T11:30:45,601   src/pmx/extensions/xdr/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2025-12-18T11:30:45,603   src/pmx/extensions/xdr/xdrfile.c:1502:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,604    1502 |         if(size3>xfp->buf1size) {
2025-12-18T11:30:45,604         |                 ^
2025-12-18T11:30:45,612   src/pmx/extensions/xdr/xdrfile.c:1617:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,613    1617 |         while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2025-12-18T11:30:45,613         |                         ^
2025-12-18T11:30:45,615   src/pmx/extensions/xdr/xdrfile.c:1622:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2025-12-18T11:30:45,615    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,616         |                          ^
2025-12-18T11:30:45,617   src/pmx/extensions/xdr/xdrfile.c:1622:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare]
2025-12-18T11:30:45,618    1622 |         maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2025-12-18T11:30:45,618         |                                            ^~~
2025-12-18T11:30:45,623   src/pmx/extensions/xdr/xdrfile.c:1732:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2025-12-18T11:30:45,624    1732 |         if(tmp==(unsigned int)buf2[0])
2025-12-18T11:30:45,624         |               ^~
2025-12-18T11:30:45,626   src/pmx/extensions/xdr/xdrfile.c:1492:13: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2025-12-18T11:30:45,626    1492 |         int errval=1;
2025-12-18T11:30:45,627         |             ^~~~~~
2025-12-18T11:30:48,163   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_trr.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o
2025-12-18T11:30:48,205   src/pmx/extensions/xdr/xdrfile_trr.c:5:2: warning: "/*" within comment [-Wcomment]
2025-12-18T11:30:48,206       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-12-18T11:30:48,206         |
2025-12-18T11:30:48,247   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:41:
2025-12-18T11:30:48,248   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-12-18T11:30:48,248       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-12-18T11:30:48,249         |
2025-12-18T11:30:48,250   In file included from src/pmx/extensions/xdr/xdrfile_trr.c:42:
2025-12-18T11:30:48,250   src/pmx/extensions/xdr/xdrfile_trr.h:5:2: warning: "/*" within comment [-Wcomment]
2025-12-18T11:30:48,251       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-12-18T11:30:48,252         |
2025-12-18T11:30:48,252   src/pmx/extensions/xdr/xdrfile_trr.c: In function ‘do_trnheader’:
2025-12-18T11:30:48,253   src/pmx/extensions/xdr/xdrfile_trr.c:108:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-12-18T11:30:48,253     108 |         if (slen != strlen(version)+1)
2025-12-18T11:30:48,254         |                  ^~
2025-12-18T11:30:48,254   src/pmx/extensions/xdr/xdrfile_trr.c:118:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2025-12-18T11:30:48,255     118 |         if (xdrfile_write_string(version,xd) != (strlen(version)+1) )
2025-12-18T11:30:48,255         |                                              ^~
2025-12-18T11:30:48,926   arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/pmx/extensions/xdr -I/usr/include/python3.11 -c src/pmx/extensions/xdr/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o
2025-12-18T11:30:48,999   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:31:
2025-12-18T11:30:49,000   src/pmx/extensions/xdr/xdrfile.h:5:2: warning: "/*" within comment [-Wcomment]
2025-12-18T11:30:49,000       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-12-18T11:30:49,001         |
2025-12-18T11:30:49,001   In file included from src/pmx/extensions/xdr/xdrfile_xtc.c:32:
2025-12-18T11:30:49,002   src/pmx/extensions/xdr/xdrfile_xtc.h:5:2: warning: "/*" within comment [-Wcomment]
2025-12-18T11:30:49,003       5 |  /* -*- mode: c; tab-width: 4; indent-tabs-mode: t; c-basic-offset: 4 -*-
2025-12-18T11:30:49,003         |
2025-12-18T11:30:49,004   src/pmx/extensions/xdr/xdrfile_xtc.c: In function ‘xtc_coord’:
2025-12-18T11:30:49,005   src/pmx/extensions/xdr/xdrfile_xtc.c:66:15: warning: unused variable ‘j’ [-Wunused-variable]
2025-12-18T11:30:49,006      66 |         int i,j,result;
2025-12-18T11:30:49,006         |               ^
2025-12-18T11:30:49,007   src/pmx/extensions/xdr/xdrfile_xtc.c:66:13: warning: unused variable ‘i’ [-Wunused-variable]
2025-12-18T11:30:49,008      66 |         int i,j,result;
2025-12-18T11:30:49,008         |             ^
2025-12-18T11:30:49,118   arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_trr.o build/temp.linux-armv7l-cpython-311/src/pmx/extensions/xdr/xdrfile_xtc.o -L/usr/lib/arm-linux-gnueabihf -lm -o build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so
2025-12-18T11:30:49,249   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2025-12-18T11:30:49,249   !!

2025-12-18T11:30:49,251           ********************************************************************************
2025-12-18T11:30:49,251           Please avoid running ``setup.py`` directly.
2025-12-18T11:30:49,252           Instead, use pypa/build, pypa/installer or other
2025-12-18T11:30:49,252           standards-based tools.

2025-12-18T11:30:49,253           This deprecation is overdue, please update your project and remove deprecated
2025-12-18T11:30:49,254           calls to avoid build errors in the future.

2025-12-18T11:30:49,255           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2025-12-18T11:30:49,256           ********************************************************************************

2025-12-18T11:30:49,257   !!
2025-12-18T11:30:49,257     self.initialize_options()
2025-12-18T11:30:49,278   installing to build/bdist.linux-armv7l/wheel
2025-12-18T11:30:49,278   running install
2025-12-18T11:30:49,302   running install_lib
2025-12-18T11:30:49,329   creating build/bdist.linux-armv7l/wheel
2025-12-18T11:30:49,331   creating build/bdist.linux-armv7l/wheel/pmx
2025-12-18T11:30:49,332   copying build/lib.linux-armv7l-cpython-311/pmx/utils.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:49,335   copying build/lib.linux-armv7l-cpython-311/pmx/mutdb.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:49,337   copying build/lib.linux-armv7l-cpython-311/pmx/jobscript.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:49,340   creating build/bdist.linux-armv7l/wheel/pmx/data
2025-12-18T11:30:49,341   copying build/lib.linux-armv7l-cpython-311/pmx/data/aminoacids.pkl -> build/bdist.linux-armv7l/wheel/./pmx/data
2025-12-18T11:30:49,347   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff
2025-12-18T11:30:49,349   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,350   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,352   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,354   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,356   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,357   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,411   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,413   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,415   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,417   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,418   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,421   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,423   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,424   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,427   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,429   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.in -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,431   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,433   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,436   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/Makefile.am -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,438   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,440   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,442   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,443   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,445   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,448   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,449   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,485   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,488   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,489   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,491   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,493   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,495   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,499   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,501   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,503   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber14sbmut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber14sbmut.ff
2025-12-18T11:30:49,505   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/spc216.gro -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff
2025-12-18T11:30:49,509   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,510   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,513   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,515   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,517   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,519   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,673   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,675   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,677   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,679   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,682   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,684   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,686   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,688   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,691   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,694   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,696   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,702   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,704   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,706   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,708   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,710   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,713   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,716   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,786   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,789   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,791   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,793   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,794   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,796   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,801   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,802   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,804   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-mut.ff
2025-12-18T11:30:49,807   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/specbond.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff
2025-12-18T11:30:49,810   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,812   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,815   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,818   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,820   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,902   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,905   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,906   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,909   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,910   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,912   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,915   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,917   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,918   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,921   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,924   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,926   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,928   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,932   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,934   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,936   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,938   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,940   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,942   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,944   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,946   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,948   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,951   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,953   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,955   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,957   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,958   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,965   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,968   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,970   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,973   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,975   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,976   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,978   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,981   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff
2025-12-18T11:30:49,988   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/elements.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff
2025-12-18T11:30:49,990   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/xlateat.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff
2025-12-18T11:30:49,992   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:49,994   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:49,996   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:49,998   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,109   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,111   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,114   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,115   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,117   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,119   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,121   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.vsd -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,124   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,179   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,210   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,213   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,217   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,218   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,220   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/nbfix.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,222   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,223   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,277   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,278   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,280   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,291   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,333   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,335   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,337   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm36m-mut.ff
2025-12-18T11:30:50,341   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/residuetypes.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff
2025-12-18T11:30:50,344   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/atommass.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff
2025-12-18T11:30:50,347   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,348   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,351   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,353   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,355   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,406   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,408   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,410   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,412   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,414   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,416   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,418   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,420   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,422   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,425   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,427   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,430   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,432   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,435   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,438   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,441   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,443   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,445   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,447   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,449   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,452   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,454   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,455   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,457   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,459   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,461   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,468   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,470   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,472   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,475   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,477   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,479   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,481   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,483   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff
2025-12-18T11:30:50,489   creating build/bdist.linux-armv7l/wheel/pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,490   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,492   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,493   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,496   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip5p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,498   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,501   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.mtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,548   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,550   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,553   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/watermodels.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,555   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spce.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,558   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/gb.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,560   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,564   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,566   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,569   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,571   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,573   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,579   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.doc -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,581   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,584   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tips3p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,586   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,589   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,592   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,595   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,597   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/cmap.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,600   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,602   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ions.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,605   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,607   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip3p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,610   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/mutres.rtp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,639   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,641   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.arn -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,643   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/spc.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,646   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,648   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/lipids.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,650   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,652   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/rna.hdb -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,654   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,659   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4p.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,662   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/forcefield.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,664   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff/charmm22star-mut.ff
2025-12-18T11:30:50,666   copying build/lib.linux-armv7l-cpython-311/pmx/data/mutff/vdwradii.dat -> build/bdist.linux-armv7l/wheel/./pmx/data/mutff
2025-12-18T11:30:50,669   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_amber.pkl -> build/bdist.linux-armv7l/wheel/./pmx/data
2025-12-18T11:30:50,676   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp_charmm.pkl -> build/bdist.linux-armv7l/wheel/./pmx/data
2025-12-18T11:30:50,682   copying build/lib.linux-armv7l-cpython-311/pmx/data/bp.pkl -> build/bdist.linux-armv7l/wheel/./pmx/data
2025-12-18T11:30:50,688   copying build/lib.linux-armv7l-cpython-311/pmx/data/rna.pkl -> build/bdist.linux-armv7l/wheel/./pmx/data
2025-12-18T11:30:50,693   copying build/lib.linux-armv7l-cpython-311/pmx/data/blosum62_new.mat -> build/bdist.linux-armv7l/wheel/./pmx/data
2025-12-18T11:30:50,905   copying build/lib.linux-armv7l-cpython-311/pmx/data/bbdep.pkl -> build/bdist.linux-armv7l/wheel/./pmx/data
2025-12-18T11:30:51,154   copying build/lib.linux-armv7l-cpython-311/pmx/forcefield.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,158   copying build/lib.linux-armv7l-cpython-311/pmx/_version.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,159   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,162   copying build/lib.linux-armv7l-cpython-311/pmx/analysis.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,165   creating build/bdist.linux-armv7l/wheel/pmx/rosetta_example
2025-12-18T11:30:51,166   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_example/README -> build/bdist.linux-armv7l/wheel/./pmx/rosetta_example
2025-12-18T11:30:51,168   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_example/prot_zn.pdb -> build/bdist.linux-armv7l/wheel/./pmx/rosetta_example
2025-12-18T11:30:51,178   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_example/mut.dat -> build/bdist.linux-armv7l/wheel/./pmx/rosetta_example
2025-12-18T11:30:51,180   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_example/analyze.py -> build/bdist.linux-armv7l/wheel/./pmx/rosetta_example
2025-12-18T11:30:51,182   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_example/rosetta_prepare.ipynb -> build/bdist.linux-armv7l/wheel/./pmx/rosetta_example
2025-12-18T11:30:51,184   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_example/submit_jobscripts.py -> build/bdist.linux-armv7l/wheel/./pmx/rosetta_example
2025-12-18T11:30:51,185   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_example/plot_results.ipynb -> build/bdist.linux-armv7l/wheel/./pmx/rosetta_example
2025-12-18T11:30:51,191   copying build/lib.linux-armv7l-cpython-311/pmx/library.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,195   copying build/lib.linux-armv7l-cpython-311/pmx/model.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,198   copying build/lib.linux-armv7l-cpython-311/pmx/geometry.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,200   copying build/lib.linux-armv7l-cpython-311/pmx/xdrfile.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,202   copying build/lib.linux-armv7l-cpython-311/pmx/summary.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,204   copying build/lib.linux-armv7l-cpython-311/pmx/ffparser.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,207   copying build/lib.linux-armv7l-cpython-311/pmx/ligand_alchemy.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,211   copying build/lib.linux-armv7l-cpython-311/pmx/options.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,213   copying build/lib.linux-armv7l-cpython-311/pmx/parser.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,216   creating build/bdist.linux-armv7l/wheel/pmx/scripts
2025-12-18T11:30:51,218   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/parameterize_ligands.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,221   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/ligandHybrid.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,223   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/atomMapping.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,226   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/make_double_box.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,228   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,230   creating build/bdist.linux-armv7l/wheel/pmx/scripts/icolos_entrypoints
2025-12-18T11:30:51,231   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/__init__.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts/icolos_entrypoints
2025-12-18T11:30:51,233   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/icolos_entrypoints/assemble_systems.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts/icolos_entrypoints
2025-12-18T11:30:51,235   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/gen_abs_restraints.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,237   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/build_cyclic_top.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,239   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/hydrogen_atom_renaming.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,242   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/setup_abfe.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,244   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/prepare_crooks_runs.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,247   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_topology.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,249   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/fill_cgenff_itp.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,252   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/generate_hybrid_residue.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,256   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/md_setup.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,258   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/repartition_mass.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,260   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/set_gmxlib.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,262   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/mutate.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,265   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/analyze_dhdl.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,268   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/cli.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,270   copying build/lib.linux-armv7l-cpython-311/pmx/scripts/fix_residue_names.py -> build/bdist.linux-armv7l/wheel/./pmx/scripts
2025-12-18T11:30:51,272   copying build/lib.linux-armv7l-cpython-311/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,274   copying build/lib.linux-armv7l-cpython-311/pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,279   copying build/lib.linux-armv7l-cpython-311/pmx/alchemy.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,282   copying build/lib.linux-armv7l-cpython-311/pmx/gmx.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,284   copying build/lib.linux-armv7l-cpython-311/pmx/AbsRestraints.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,287   copying build/lib.linux-armv7l-cpython-311/pmx/ndx.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,289   copying build/lib.linux-armv7l-cpython-311/pmx/resselection.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,292   copying build/lib.linux-armv7l-cpython-311/pmx/rosetta_analyze.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,295   copying build/lib.linux-armv7l-cpython-311/pmx/rotamer.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,297   copying build/lib.linux-armv7l-cpython-311/pmx/molecule.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,301   copying build/lib.linux-armv7l-cpython-311/pmx/_pmx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,307   copying build/lib.linux-armv7l-cpython-311/pmx/chain.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,310   copying build/lib.linux-armv7l-cpython-311/pmx/estimators.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,313   copying build/lib.linux-armv7l-cpython-311/pmx/atomselection.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,315   creating build/bdist.linux-armv7l/wheel/pmx/extensions
2025-12-18T11:30:51,317   creating build/bdist.linux-armv7l/wheel/pmx/extensions/pmx
2025-12-18T11:30:51,318   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/cpp_test.cpp -> build/bdist.linux-armv7l/wheel/./pmx/extensions/pmx
2025-12-18T11:30:51,320   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/init.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/pmx
2025-12-18T11:30:51,322   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/pmx.h -> build/bdist.linux-armv7l/wheel/./pmx/extensions/pmx
2025-12-18T11:30:51,325   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Energy.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/pmx
2025-12-18T11:30:51,327   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/wrap_Geometry.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/pmx
2025-12-18T11:30:51,330   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.h -> build/bdist.linux-armv7l/wheel/./pmx/extensions/pmx
2025-12-18T11:30:51,332   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/pmx/Geometry.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/pmx
2025-12-18T11:30:51,336   creating build/bdist.linux-armv7l/wheel/pmx/extensions/xdr
2025-12-18T11:30:51,336   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_c_test.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,339   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,341   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,345   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,347   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.h -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,349   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile_trr.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,351   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/trr2xtc.c -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,354   copying build/lib.linux-armv7l-cpython-311/pmx/extensions/xdr/xdrfile.h -> build/bdist.linux-armv7l/wheel/./pmx/extensions/xdr
2025-12-18T11:30:51,356   copying build/lib.linux-armv7l-cpython-311/pmx/builder.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,359   copying build/lib.linux-armv7l-cpython-311/pmx/atom.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,361   copying build/lib.linux-armv7l-cpython-311/pmx/xtc.py -> build/bdist.linux-armv7l/wheel/./pmx
2025-12-18T11:30:51,363   running install_egg_info
2025-12-18T11:30:51,397   Copying src/pmx_biobb.egg-info to build/bdist.linux-armv7l/wheel/./pmx_biobb-5.2.0-py3.11.egg-info
2025-12-18T11:30:51,412   running install_scripts
2025-12-18T11:30:51,465   creating build/bdist.linux-armv7l/wheel/pmx_biobb-5.2.0.dist-info/WHEEL
2025-12-18T11:30:51,467   creating '/tmp/pip-wheel-1tnun5ce/pmx_biobb-5.2.0-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-12-18T11:30:51,472   adding 'pmx/AbsRestraints.py'
2025-12-18T11:30:51,474   adding 'pmx/__init__.py'
2025-12-18T11:30:51,508   adding 'pmx/_pmx.cpython-311-arm-linux-gnueabihf.so'
2025-12-18T11:30:51,510   adding 'pmx/_version.py'
2025-12-18T11:30:51,531   adding 'pmx/_xdrio.cpython-311-arm-linux-gnueabihf.so'
2025-12-18T11:30:51,539   adding 'pmx/alchemy.py'
2025-12-18T11:30:51,542   adding 'pmx/analysis.py'
2025-12-18T11:30:51,544   adding 'pmx/atom.py'
2025-12-18T11:30:51,547   adding 'pmx/atomselection.py'
2025-12-18T11:30:51,549   adding 'pmx/builder.py'
2025-12-18T11:30:51,553   adding 'pmx/chain.py'
2025-12-18T11:30:51,556   adding 'pmx/estimators.py'
2025-12-18T11:30:51,559   adding 'pmx/ffparser.py'
2025-12-18T11:30:51,568   adding 'pmx/forcefield.py'
2025-12-18T11:30:51,571   adding 'pmx/geometry.py'
2025-12-18T11:30:51,573   adding 'pmx/gmx.py'
2025-12-18T11:30:51,574   adding 'pmx/jobscript.py'
2025-12-18T11:30:51,583   adding 'pmx/library.py'
2025-12-18T11:30:51,595   adding 'pmx/ligand_alchemy.py'
2025-12-18T11:30:51,601   adding 'pmx/model.py'
2025-12-18T11:30:51,605   adding 'pmx/molecule.py'
2025-12-18T11:30:51,607   adding 'pmx/mutdb.py'
2025-12-18T11:30:51,609   adding 'pmx/ndx.py'
2025-12-18T11:30:51,611   adding 'pmx/options.py'
2025-12-18T11:30:51,613   adding 'pmx/parser.py'
2025-12-18T11:30:51,615   adding 'pmx/resselection.py'
2025-12-18T11:30:51,618   adding 'pmx/rosetta.py'
2025-12-18T11:30:51,620   adding 'pmx/rosetta_analyze.py'
2025-12-18T11:30:51,622   adding 'pmx/rotamer.py'
2025-12-18T11:30:51,624   adding 'pmx/summary.py'
2025-12-18T11:30:51,626   adding 'pmx/utils.py'
2025-12-18T11:30:51,628   adding 'pmx/xdrfile.py'
2025-12-18T11:30:51,629   adding 'pmx/xtc.py'
2025-12-18T11:30:51,656   adding 'pmx/data/aminoacids.pkl'
2025-12-18T11:30:53,468   adding 'pmx/data/bbdep.pkl'
2025-12-18T11:30:53,576   adding 'pmx/data/blosum62_new.mat'
2025-12-18T11:30:53,591   adding 'pmx/data/bp.pkl'
2025-12-18T11:30:53,610   adding 'pmx/data/bp_amber.pkl'
2025-12-18T11:30:53,631   adding 'pmx/data/bp_charmm.pkl'
2025-12-18T11:30:53,640   adding 'pmx/data/rna.pkl'
2025-12-18T11:30:53,642   adding 'pmx/data/mutff/atommass.dat'
2025-12-18T11:30:53,644   adding 'pmx/data/mutff/elements.dat'
2025-12-18T11:30:53,646   adding 'pmx/data/mutff/residuetypes.dat'
2025-12-18T11:30:53,653   adding 'pmx/data/mutff/spc216.gro'
2025-12-18T11:30:53,654   adding 'pmx/data/mutff/specbond.dat'
2025-12-18T11:30:53,656   adding 'pmx/data/mutff/vdwradii.dat'
2025-12-18T11:30:53,657   adding 'pmx/data/mutff/xlateat.dat'
2025-12-18T11:30:53,660   adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.am'
2025-12-18T11:30:53,662   adding 'pmx/data/mutff/amber14sbmut.ff/Makefile.in'
2025-12-18T11:30:53,664   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.arn'
2025-12-18T11:30:53,665   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.c.tdb'
2025-12-18T11:30:53,667   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.hdb'
2025-12-18T11:30:53,668   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.n.tdb'
2025-12-18T11:30:53,669   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.r2b'
2025-12-18T11:30:53,675   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.rtp'
2025-12-18T11:30:53,677   adding 'pmx/data/mutff/amber14sbmut.ff/aminoacids.vsd'
2025-12-18T11:30:53,679   adding 'pmx/data/mutff/amber14sbmut.ff/atomtypes.atp'
2025-12-18T11:30:53,680   adding 'pmx/data/mutff/amber14sbmut.ff/dna.arn'
2025-12-18T11:30:53,681   adding 'pmx/data/mutff/amber14sbmut.ff/dna.hdb'
2025-12-18T11:30:53,682   adding 'pmx/data/mutff/amber14sbmut.ff/dna.r2b'
2025-12-18T11:30:53,684   adding 'pmx/data/mutff/amber14sbmut.ff/dna.rtp'
2025-12-18T11:30:53,691   adding 'pmx/data/mutff/amber14sbmut.ff/ffbonded.itp'
2025-12-18T11:30:53,694   adding 'pmx/data/mutff/amber14sbmut.ff/ffnonbonded.itp'
2025-12-18T11:30:53,695   adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.doc'
2025-12-18T11:30:53,696   adding 'pmx/data/mutff/amber14sbmut.ff/forcefield.itp'
2025-12-18T11:30:53,698   adding 'pmx/data/mutff/amber14sbmut.ff/gbsa.itp'
2025-12-18T11:30:53,699   adding 'pmx/data/mutff/amber14sbmut.ff/ions.itp'
2025-12-18T11:30:53,878   adding 'pmx/data/mutff/amber14sbmut.ff/mutres.mtp'
2025-12-18T11:30:53,962   adding 'pmx/data/mutff/amber14sbmut.ff/mutres.rtp'
2025-12-18T11:30:53,971   adding 'pmx/data/mutff/amber14sbmut.ff/rna.arn'
2025-12-18T11:30:53,972   adding 'pmx/data/mutff/amber14sbmut.ff/rna.hdb'
2025-12-18T11:30:53,973   adding 'pmx/data/mutff/amber14sbmut.ff/rna.r2b'
2025-12-18T11:30:53,976   adding 'pmx/data/mutff/amber14sbmut.ff/rna.rtp'
2025-12-18T11:30:53,977   adding 'pmx/data/mutff/amber14sbmut.ff/spc.itp'
2025-12-18T11:30:53,978   adding 'pmx/data/mutff/amber14sbmut.ff/spce.itp'
2025-12-18T11:30:53,980   adding 'pmx/data/mutff/amber14sbmut.ff/tip3p.itp'
2025-12-18T11:30:53,981   adding 'pmx/data/mutff/amber14sbmut.ff/tip4p.itp'
2025-12-18T11:30:53,982   adding 'pmx/data/mutff/amber14sbmut.ff/tip4pew.itp'
2025-12-18T11:30:53,983   adding 'pmx/data/mutff/amber14sbmut.ff/tip5p.itp'
2025-12-18T11:30:53,985   adding 'pmx/data/mutff/amber14sbmut.ff/urea.itp'
2025-12-18T11:30:53,986   adding 'pmx/data/mutff/amber14sbmut.ff/watermodels.dat'
2025-12-18T11:30:53,990   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn'
2025-12-18T11:30:53,991   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.arn_backup'
2025-12-18T11:30:53,992   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.c.tdb'
2025-12-18T11:30:53,994   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.hdb'
2025-12-18T11:30:53,995   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.n.tdb'
2025-12-18T11:30:53,996   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.r2b'
2025-12-18T11:30:54,004   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.rtp'
2025-12-18T11:30:54,006   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/aminoacids.vsd'
2025-12-18T11:30:54,008   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/atomtypes.atp'
2025-12-18T11:30:54,012   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_ffbonded_for_ildn_test.itp'
2025-12-18T11:30:54,086   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/backup_mutres'
2025-12-18T11:30:54,097   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/correct_ffbonded.itp'
2025-12-18T11:30:54,098   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.arn'
2025-12-18T11:30:54,099   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.hdb'
2025-12-18T11:30:54,101   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.r2b'
2025-12-18T11:30:54,103   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/dna.rtp'
2025-12-18T11:30:54,105   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffberger.itp'
2025-12-18T11:30:54,110   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffbonded.itp'
2025-12-18T11:30:54,112   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ffnonbonded.itp'
2025-12-18T11:30:54,113   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.doc'
2025-12-18T11:30:54,114   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/forcefield.itp'
2025-12-18T11:30:54,115   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/gbsa.itp'
2025-12-18T11:30:54,117   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/ions.itp'
2025-12-18T11:30:54,134   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.mtp'
2025-12-18T11:30:54,144   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/mutres_dna.rtp'
2025-12-18T11:30:54,147   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer.itp'
2025-12-18T11:30:54,149   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/popc_AmbBer_posre.itp'
2025-12-18T11:30:54,150   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.arn'
2025-12-18T11:30:54,152   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.hdb'
2025-12-18T11:30:54,153   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.r2b'
2025-12-18T11:30:54,155   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/rna.rtp'
2025-12-18T11:30:54,157   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spc.itp'
2025-12-18T11:30:54,158   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/spce.itp'
2025-12-18T11:30:54,159   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip3p.itp'
2025-12-18T11:30:54,160   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4p.itp'
2025-12-18T11:30:54,162   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip4pew.itp'
2025-12-18T11:30:54,163   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/tip5p.itp'
2025-12-18T11:30:54,165   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/urea.itp'
2025-12-18T11:30:54,166   adding 'pmx/data/mutff/amber99sb-star-ildn-bsc1-mut.ff/watermodels.dat'
2025-12-18T11:30:54,168   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.arn'
2025-12-18T11:30:54,169   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.c.tdb'
2025-12-18T11:30:54,171   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.hdb'
2025-12-18T11:30:54,172   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.n.tdb'
2025-12-18T11:30:54,174   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.r2b'
2025-12-18T11:30:54,182   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.rtp'
2025-12-18T11:30:54,184   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/aminoacids.vsd'
2025-12-18T11:30:54,186   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/atomtypes.atp'
2025-12-18T11:30:54,190   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_ffbonded_for_ildn_test.itp'
2025-12-18T11:30:54,258   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/backup_mutres'
2025-12-18T11:30:54,269   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/correct_ffbonded.itp'
2025-12-18T11:30:54,270   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.arn'
2025-12-18T11:30:54,271   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.hdb'
2025-12-18T11:30:54,272   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.r2b'
2025-12-18T11:30:54,275   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/dna.rtp'
2025-12-18T11:30:54,277   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffberger.itp'
2025-12-18T11:30:54,280   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffbonded.itp'
2025-12-18T11:30:54,282   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ffnonbonded.itp'
2025-12-18T11:30:54,283   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.doc'
2025-12-18T11:30:54,285   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/forcefield.itp'
2025-12-18T11:30:54,286   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/gbsa.itp'
2025-12-18T11:30:54,287   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/ions.itp'
2025-12-18T11:30:54,305   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.mtp'
2025-12-18T11:30:54,314   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/mutres_dna.rtp'
2025-12-18T11:30:54,317   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer.itp'
2025-12-18T11:30:54,320   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/popc_AmbBer_posre.itp'
2025-12-18T11:30:54,321   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.arn'
2025-12-18T11:30:54,322   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.hdb'
2025-12-18T11:30:54,323   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.r2b'
2025-12-18T11:30:54,325   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/rna.rtp'
2025-12-18T11:30:54,327   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spc.itp'
2025-12-18T11:30:54,328   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/spce.itp'
2025-12-18T11:30:54,329   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip3p.itp'
2025-12-18T11:30:54,330   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4p.itp'
2025-12-18T11:30:54,332   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip4pew.itp'
2025-12-18T11:30:54,333   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/tip5p.itp'
2025-12-18T11:30:54,334   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/urea.itp'
2025-12-18T11:30:54,335   adding 'pmx/data/mutff/amber99sb-star-ildn-dna-mut.ff/watermodels.dat'
2025-12-18T11:30:54,338   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.arn'
2025-12-18T11:30:54,339   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.c.tdb'
2025-12-18T11:30:54,341   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.hdb'
2025-12-18T11:30:54,342   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.n.tdb'
2025-12-18T11:30:54,343   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.r2b'
2025-12-18T11:30:54,352   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.rtp'
2025-12-18T11:30:54,354   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/aminoacids.vsd'
2025-12-18T11:30:54,355   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/atomtypes.atp'
2025-12-18T11:30:54,356   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.arn'
2025-12-18T11:30:54,357   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.hdb'
2025-12-18T11:30:54,359   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.r2b'
2025-12-18T11:30:54,361   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/dna.rtp'
2025-12-18T11:30:54,365   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffbonded.itp'
2025-12-18T11:30:54,367   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ffnonbonded.itp'
2025-12-18T11:30:54,368   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.doc'
2025-12-18T11:30:54,369   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/forcefield.itp'
2025-12-18T11:30:54,370   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/gbsa.itp'
2025-12-18T11:30:54,371   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/ions.itp'
2025-12-18T11:30:54,588   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.mtp'
2025-12-18T11:30:54,692   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/mutres.rtp'
2025-12-18T11:30:54,702   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.arn'
2025-12-18T11:30:54,703   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.hdb'
2025-12-18T11:30:54,704   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.r2b'
2025-12-18T11:30:54,707   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/rna.rtp'
2025-12-18T11:30:54,708   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spc.itp'
2025-12-18T11:30:54,709   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/spce.itp'
2025-12-18T11:30:54,711   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip3p.itp'
2025-12-18T11:30:54,712   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4p.itp'
2025-12-18T11:30:54,713   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip4pew.itp'
2025-12-18T11:30:54,715   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/tip5p.itp'
2025-12-18T11:30:54,716   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/urea.itp'
2025-12-18T11:30:54,717   adding 'pmx/data/mutff/amber99sb-star-ildn-mut.ff/watermodels.dat'
2025-12-18T11:30:54,719   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.arn'
2025-12-18T11:30:54,720   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.c.tdb'
2025-12-18T11:30:54,722   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.hdb'
2025-12-18T11:30:54,723   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.n.tdb'
2025-12-18T11:30:54,724   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.r2b'
2025-12-18T11:30:54,728   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.rtp'
2025-12-18T11:30:54,730   adding 'pmx/data/mutff/charmm22star-mut.ff/aminoacids.vsd'
2025-12-18T11:30:54,732   adding 'pmx/data/mutff/charmm22star-mut.ff/atomtypes.atp'
2025-12-18T11:30:54,737   adding 'pmx/data/mutff/charmm22star-mut.ff/cmap.itp'
2025-12-18T11:30:54,738   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.arn'
2025-12-18T11:30:54,740   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.c.tdb'
2025-12-18T11:30:54,741   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.hdb'
2025-12-18T11:30:54,742   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.n.tdb'
2025-12-18T11:30:54,744   adding 'pmx/data/mutff/charmm22star-mut.ff/dna.rtp'
2025-12-18T11:30:54,751   adding 'pmx/data/mutff/charmm22star-mut.ff/ffbonded.itp'
2025-12-18T11:30:54,758   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnabonded.itp'
2025-12-18T11:30:54,763   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnanonbonded.itp'
2025-12-18T11:30:54,775   adding 'pmx/data/mutff/charmm22star-mut.ff/ffnonbonded.itp'
2025-12-18T11:30:54,777   adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.doc'
2025-12-18T11:30:54,778   adding 'pmx/data/mutff/charmm22star-mut.ff/forcefield.itp'
2025-12-18T11:30:54,779   adding 'pmx/data/mutff/charmm22star-mut.ff/gb.itp'
2025-12-18T11:30:54,781   adding 'pmx/data/mutff/charmm22star-mut.ff/ions.itp'
2025-12-18T11:30:54,782   adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.hdb'
2025-12-18T11:30:54,786   adding 'pmx/data/mutff/charmm22star-mut.ff/lipids.rtp'
2025-12-18T11:30:54,787   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.arn'
2025-12-18T11:30:54,937   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.mtp'
2025-12-18T11:30:55,012   adding 'pmx/data/mutff/charmm22star-mut.ff/mutres.rtp'
2025-12-18T11:30:55,021   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.arn'
2025-12-18T11:30:55,022   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.c.tdb'
2025-12-18T11:30:55,023   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.hdb'
2025-12-18T11:30:55,025   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.n.tdb'
2025-12-18T11:30:55,026   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.r2b'
2025-12-18T11:30:55,027   adding 'pmx/data/mutff/charmm22star-mut.ff/rna.rtp'
2025-12-18T11:30:55,029   adding 'pmx/data/mutff/charmm22star-mut.ff/spc.itp'
2025-12-18T11:30:55,030   adding 'pmx/data/mutff/charmm22star-mut.ff/spce.itp'
2025-12-18T11:30:55,031   adding 'pmx/data/mutff/charmm22star-mut.ff/tip3p.itp'
2025-12-18T11:30:55,032   adding 'pmx/data/mutff/charmm22star-mut.ff/tip4p.itp'
2025-12-18T11:30:55,033   adding 'pmx/data/mutff/charmm22star-mut.ff/tip4pew.itp'
2025-12-18T11:30:55,034   adding 'pmx/data/mutff/charmm22star-mut.ff/tip5p.itp'
2025-12-18T11:30:55,035   adding 'pmx/data/mutff/charmm22star-mut.ff/tips3p.itp'
2025-12-18T11:30:55,037   adding 'pmx/data/mutff/charmm22star-mut.ff/watermodels.dat'
2025-12-18T11:30:55,041   adding 'pmx/data/mutff/charmm36m-mut.ff/atomtypes.atp'
2025-12-18T11:30:55,053   adding 'pmx/data/mutff/charmm36m-mut.ff/cmap.itp'
2025-12-18T11:30:55,159   adding 'pmx/data/mutff/charmm36m-mut.ff/ffbonded.itp'
2025-12-18T11:30:55,299   adding 'pmx/data/mutff/charmm36m-mut.ff/ffnonbonded.itp'
2025-12-18T11:30:55,312   adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.doc'
2025-12-18T11:30:55,313   adding 'pmx/data/mutff/charmm36m-mut.ff/forcefield.itp'
2025-12-18T11:30:55,315   adding 'pmx/data/mutff/charmm36m-mut.ff/gb.itp'
2025-12-18T11:30:55,316   adding 'pmx/data/mutff/charmm36m-mut.ff/ions.itp'
2025-12-18T11:30:55,318   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.arn'
2025-12-18T11:30:55,319   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.c.tdb'
2025-12-18T11:30:55,321   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.hdb'
2025-12-18T11:30:55,323   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.n.tdb'
2025-12-18T11:30:55,324   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.r2b'
2025-12-18T11:30:55,466   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.rtp'
2025-12-18T11:30:55,475   adding 'pmx/data/mutff/charmm36m-mut.ff/merged.vsd'
2025-12-18T11:30:55,476   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.arn'
2025-12-18T11:30:55,671   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.mtp'
2025-12-18T11:30:55,760   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres.rtp'
2025-12-18T11:30:55,796   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.mtp'
2025-12-18T11:30:55,808   adding 'pmx/data/mutff/charmm36m-mut.ff/mutres_dna.rtp'
2025-12-18T11:30:55,811   adding 'pmx/data/mutff/charmm36m-mut.ff/nbfix.itp'
2025-12-18T11:30:55,813   adding 'pmx/data/mutff/charmm36m-mut.ff/spc.itp'
2025-12-18T11:30:55,814   adding 'pmx/data/mutff/charmm36m-mut.ff/spce.itp'
2025-12-18T11:30:55,816   adding 'pmx/data/mutff/charmm36m-mut.ff/tip3p.itp'
2025-12-18T11:30:55,817   adding 'pmx/data/mutff/charmm36m-mut.ff/tip4p.itp'
2025-12-18T11:30:55,819   adding 'pmx/data/mutff/charmm36m-mut.ff/watermodels.dat'
2025-12-18T11:30:55,822   adding 'pmx/extensions/pmx/Energy.c'
2025-12-18T11:30:55,826   adding 'pmx/extensions/pmx/Geometry.c'
2025-12-18T11:30:55,830   adding 'pmx/extensions/pmx/Geometry.h'
2025-12-18T11:30:55,832   adding 'pmx/extensions/pmx/cpp_test.cpp'
2025-12-18T11:30:55,834   adding 'pmx/extensions/pmx/init.c'
2025-12-18T11:30:55,836   adding 'pmx/extensions/pmx/pmx.h'
2025-12-18T11:30:55,839   adding 'pmx/extensions/pmx/wrap_Geometry.c'
2025-12-18T11:30:55,842   adding 'pmx/extensions/xdr/trr2xtc.c'
2025-12-18T11:30:55,852   adding 'pmx/extensions/xdr/xdrfile.c'
2025-12-18T11:30:55,856   adding 'pmx/extensions/xdr/xdrfile.h'
2025-12-18T11:30:55,859   adding 'pmx/extensions/xdr/xdrfile_c_test.c'
2025-12-18T11:30:55,862   adding 'pmx/extensions/xdr/xdrfile_trr.c'
2025-12-18T11:30:55,864   adding 'pmx/extensions/xdr/xdrfile_trr.h'
2025-12-18T11:30:55,865   adding 'pmx/extensions/xdr/xdrfile_xtc.c'
2025-12-18T11:30:55,867   adding 'pmx/extensions/xdr/xdrfile_xtc.h'
2025-12-18T11:30:55,868   adding 'pmx/rosetta_example/README'
2025-12-18T11:30:55,869   adding 'pmx/rosetta_example/analyze.py'
2025-12-18T11:30:55,871   adding 'pmx/rosetta_example/mut.dat'
2025-12-18T11:30:55,900   adding 'pmx/rosetta_example/plot_results.ipynb'
2025-12-18T11:30:55,992   adding 'pmx/rosetta_example/prot_zn.pdb'
2025-12-18T11:30:55,997   adding 'pmx/rosetta_example/rosetta_prepare.ipynb'
2025-12-18T11:30:55,998   adding 'pmx/rosetta_example/submit_jobscripts.py'
2025-12-18T11:30:56,000   adding 'pmx/scripts/__init__.py'
2025-12-18T11:30:56,003   adding 'pmx/scripts/analyze_dhdl.py'
2025-12-18T11:30:56,005   adding 'pmx/scripts/atomMapping.py'
2025-12-18T11:30:56,007   adding 'pmx/scripts/build_cyclic_top.py'
2025-12-18T11:30:56,008   adding 'pmx/scripts/cli.py'
2025-12-18T11:30:56,011   adding 'pmx/scripts/fill_cgenff_itp.py'
2025-12-18T11:30:56,013   adding 'pmx/scripts/fix_residue_names.py'
2025-12-18T11:30:56,014   adding 'pmx/scripts/gen_abs_restraints.py'
2025-12-18T11:30:56,021   adding 'pmx/scripts/generate_hybrid_residue.py'
2025-12-18T11:30:56,023   adding 'pmx/scripts/generate_hybrid_topology.py'
2025-12-18T11:30:56,025   adding 'pmx/scripts/hydrogen_atom_renaming.py'
2025-12-18T11:30:56,027   adding 'pmx/scripts/ligandHybrid.py'
2025-12-18T11:30:56,028   adding 'pmx/scripts/make_double_box.py'
2025-12-18T11:30:56,031   adding 'pmx/scripts/md_setup.py'
2025-12-18T11:30:56,034   adding 'pmx/scripts/mutate.py'
2025-12-18T11:30:56,038   adding 'pmx/scripts/parameterize_ligands.py'
2025-12-18T11:30:56,040   adding 'pmx/scripts/prepare_crooks_runs.py'
2025-12-18T11:30:56,041   adding 'pmx/scripts/repartition_mass.py'
2025-12-18T11:30:56,043   adding 'pmx/scripts/set_gmxlib.py'
2025-12-18T11:30:56,045   adding 'pmx/scripts/setup_abfe.py'
2025-12-18T11:30:56,047   adding 'pmx/scripts/icolos_entrypoints/__init__.py'
2025-12-18T11:30:56,048   adding 'pmx/scripts/icolos_entrypoints/assemble_systems.py'
2025-12-18T11:30:56,051   adding 'pmx_biobb-5.2.0.dist-info/licenses/LICENSE'
2025-12-18T11:30:56,053   adding 'pmx_biobb-5.2.0.dist-info/METADATA'
2025-12-18T11:30:56,054   adding 'pmx_biobb-5.2.0.dist-info/WHEEL'
2025-12-18T11:30:56,055   adding 'pmx_biobb-5.2.0.dist-info/entry_points.txt'
2025-12-18T11:30:56,056   adding 'pmx_biobb-5.2.0.dist-info/top_level.txt'
2025-12-18T11:30:56,061   adding 'pmx_biobb-5.2.0.dist-info/RECORD'
2025-12-18T11:30:56,135   removing build/bdist.linux-armv7l/wheel
2025-12-18T11:30:56,380   Building wheel for pmx-biobb (setup.py): finished with status 'done'
2025-12-18T11:30:56,561   Created wheel for pmx-biobb: filename=pmx_biobb-5.2.0-cp311-cp311-linux_armv7l.whl size=5730897 sha256=674c314199bb33edcf62c2e5acef5e2852ac4be5aa1d93b4aa13b6db7b4c6674
2025-12-18T11:30:56,562   Stored in directory: /tmp/pip-ephem-wheel-cache-9hj87r4t/wheels/27/64/51/377c04a009b5a35fbb7263d2bd1f5a38f7544e31d3ab628cad
2025-12-18T11:30:57,428 Successfully built pmx-biobb
2025-12-18T11:30:57,581 Removed build tracker: '/tmp/pip-build-tracker-5kdjyhcv'