2025-12-22T17:06:04,951 Created temporary directory: /tmp/pip-ephem-wheel-cache-o8ph2gyv 2025-12-22T17:06:04,953 Created temporary directory: /tmp/pip-build-tracker-pxocvogm 2025-12-22T17:06:04,954 Initialized build tracking at /tmp/pip-build-tracker-pxocvogm 2025-12-22T17:06:04,954 Created build tracker: /tmp/pip-build-tracker-pxocvogm 2025-12-22T17:06:04,954 Entered build tracker: /tmp/pip-build-tracker-pxocvogm 2025-12-22T17:06:04,955 Created temporary directory: /tmp/pip-wheel-uh9ud2w_ 2025-12-22T17:06:04,958 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-22T17:06:04,960 Created temporary directory: /tmp/pip-ephem-wheel-cache-tk0fw_b5 2025-12-22T17:06:04,982 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-22T17:06:04,985 2 location(s) to search for versions of biobb-dna: 2025-12-22T17:06:04,985 * https://pypi.org/simple/biobb-dna/ 2025-12-22T17:06:04,985 * https://www.piwheels.org/simple/biobb-dna/ 2025-12-22T17:06:04,986 Fetching project page and analyzing links: https://pypi.org/simple/biobb-dna/ 2025-12-22T17:06:04,987 Getting page https://pypi.org/simple/biobb-dna/ 2025-12-22T17:06:04,988 Found index url https://pypi.org/simple 2025-12-22T17:06:05,201 Fetched page https://pypi.org/simple/biobb-dna/ as application/vnd.pypi.simple.v1+json 2025-12-22T17:06:05,210 Skipping link: No binaries permitted for biobb-dna: 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https://files.pythonhosted.org/packages/da/94/492990dcd8ae5f5f9d60eedfa591c6ce32003f6c87813e2f40f61409d8a0/biobb_dna-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-12-22T17:06:05,226 Found link https://files.pythonhosted.org/packages/dd/a7/709096c4439e6465a80427da0a1f7351127f3a9d9663199bbc9c93bbaeef/biobb_dna-3.8.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7), version: 3.8.0 2025-12-22T17:06:05,227 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/52/16/4ab710397f75e6894772a11994f1c3978bff6456c625de05d2fb5192c582/biobb_dna-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-12-22T17:06:05,228 Found link https://files.pythonhosted.org/packages/a2/76/2299e0de6bd7e77ce2f626b55cccc0c5f0e8d09fca1caa61e712aa82be56/biobb_dna-3.8.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7), version: 3.8.1 2025-12-22T17:06:05,229 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/01/1f/e19d69ba55e98f2a4c7613c3dd6bc34e3fe3c13b427ff0679ef136eb5ebd/biobb_dna-3.8.2-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-12-22T17:06:05,230 Found link https://files.pythonhosted.org/packages/e7/17/02c98e08c5d87def49ce1b838eeda49b21f17ee3bfadc892579b797a6a3c/biobb_dna-3.8.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7), version: 3.8.2 2025-12-22T17:06:05,230 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/74/63/9e100399ec8f50d7fcba39818c6f27421e00ff2bc0c086b39afa6636217a/biobb_dna-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-12-22T17:06:05,231 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/26/0a/bb6609ac290394bd02d32b42b00f45c6483f9f677eea6ac9d41b946a6162/biobb_dna-3.9.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-12-22T17:06:05,232 Skipping link: 3.9.0 Requires-Python >=3.7,<3.10: https://files.pythonhosted.org/packages/26/0a/bb6609ac290394bd02d32b42b00f45c6483f9f677eea6ac9d41b946a6162/biobb_dna-3.9.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-12-22T17:06:05,232 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/73/fc/01f47893ac3029fd382c365bedecc5210f1a5b8e71e1550a9dfd22695874/biobb_dna-4.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-12-22T17:06:05,233 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): https://files.pythonhosted.org/packages/8b/e4/122357aae8b362e3e252dbfdfaf43ceeb84901c1e961284fab6a21328182/biobb_dna-4.0.0.tar.gz (from 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https://files.pythonhosted.org/packages/80/fe/4c9c9705ff8fc51b8acc3be707a7b713420627a0a2fef28d110fe0e77131/biobb_dna-4.2.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,237 Found link https://files.pythonhosted.org/packages/6a/82/fa879d949eb9e7abafa4bb82af940c224fc4e6e19b613d541c2ce048c2cd/biobb_dna-4.2.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.0 2025-12-22T17:06:05,238 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/19/19/2aac167e22fc609602273f893691ee82a68c72c02945b272a1abbe520a1f/biobb_dna-4.2.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,239 Found link https://files.pythonhosted.org/packages/24/f8/3c6841cf8ca488ed103426e1b0cbe263899d048bf131ffb4f2f0c4084b99/biobb_dna-4.2.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.1 2025-12-22T17:06:05,239 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/15/6a/5126a8f72789ccb0269e627266e04f5bd01c3039d264ccab3667570f8dfd/biobb_dna-4.2.2-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,240 Found link https://files.pythonhosted.org/packages/99/5c/523255796e940afc9fa3d8881708f109efc7819fdd2156cfbb70df594f05/biobb_dna-4.2.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.2 2025-12-22T17:06:05,241 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/36/29/107c4134099ab74ba073d9b3091c99717b854910798ca5594d6d7c9b4fb5/biobb_dna-4.2.3-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,242 Found link https://files.pythonhosted.org/packages/81/cb/434e774a7f5cadf9ccd04e25ee583836bf974066f5718648f4fefb9b9284/biobb_dna-4.2.3.tar.gz (from 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https://files.pythonhosted.org/packages/b6/e6/366e1c56eb32a4197dde6d219114e65923a729cbcb93bbbf3d8f03ef0afb/biobb_dna-5.0.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9), version: 5.0.0 2025-12-22T17:06:05,245 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/fd/58/75c5b14c74b2af8b5b77e9c54784c0d13b3d46fecb6cdaac8f4a551a40d9/biobb_dna-5.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-12-22T17:06:05,246 Found link https://files.pythonhosted.org/packages/07/09/8011b4e1e75f6922ad2f79eddf1f88738e99368639806f34946eb9a9a305/biobb_dna-5.0.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9), version: 5.0.1 2025-12-22T17:06:05,247 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/e2/56/c204dbb7fd97d704df11db2564094af9e70e45175ce163d25d7af84d56a4/biobb_dna-5.1.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-12-22T17:06:05,248 Found link https://files.pythonhosted.org/packages/a6/95/1759571018eff5411bdc34d558e3b3b800b3ae6dcaedcf24c99d615b277d/biobb_dna-5.1.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9), version: 5.1.0 2025-12-22T17:06:05,248 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/d2/06/866b499a6db2d0a73e9b56674afc8fb2113357c1c4ffffe9f03afe66342e/biobb_dna-5.2.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.10) 2025-12-22T17:06:05,249 Found link https://files.pythonhosted.org/packages/2c/15/f96fb7fa7dd26282561d01ca504eaacc8e00240586ff894b0435dfe977a6/biobb_dna-5.2.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.10), version: 5.2.0 2025-12-22T17:06:05,250 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-dna/ 2025-12-22T17:06:05,251 Getting page https://www.piwheels.org/simple/biobb-dna/ 2025-12-22T17:06:05,252 Found index url https://www.piwheels.org/simple 2025-12-22T17:06:05,406 Fetched page https://www.piwheels.org/simple/biobb-dna/ as text/html 2025-12-22T17:06:05,413 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-5.1.0-py3-none-any.whl#sha256=c260516a48309267d3ff3c7778adefde051e9193a26e60ae4f45f1f571028a75 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-12-22T17:06:05,414 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-5.0.1-py3-none-any.whl#sha256=c254a410c55256c430977464637598803c90219a61b05ea02f0853b873292091 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-12-22T17:06:05,415 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-5.0.0-py3-none-any.whl#sha256=9c3865912bcd4c4d1ac6439424f3a8ff956bac3d0e35619814ac29fc3a4eb4b0 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.9) 2025-12-22T17:06:05,415 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.2.4-py3-none-any.whl#sha256=c14612766fffd5010c607ba404d69b6f17f7d9956343eb15090977b6f1883d37 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,416 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.2.3-py3-none-any.whl#sha256=5b55db00398aae0c5bfc63c78728264a40ba8dbd55b9a4505d6aa25f38ef95d9 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,416 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.2.2-py3-none-any.whl#sha256=6d308e6523ebc43990811309e09cae5df9d461ffc82efc9fdf0901c43b944c46 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,417 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.2.1-py3-none-any.whl#sha256=8d6ef37049e25de654761b4bd1434dcc56fd2fcfc93836c05329831fd6303464 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,417 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.2.0-py3-none-any.whl#sha256=eea33f3dcf905cc5e1c85d7aecee6928b82fcc98ba86e6715029340921cae8ba (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,418 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.1.0-py3-none-any.whl#sha256=0d2b72ff9c80187e1c43d474e29882299e0d2a43965a2b4f52eae39410cc44e7 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.8) 2025-12-22T17:06:05,419 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.0.0-py3-none-any.whl#sha256=b957365e97233440b8d586a12cfb51c820d602c64f962b427edc863572a1c643 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-12-22T17:06:05,419 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.9.0-py3-none-any.whl#sha256=8e3610ec7977638287956fdb98eccfe31ecba6873dc2d3b85ea33b6f59543d6f (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2025-12-22T17:06:05,420 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.8.2-py3-none-any.whl#sha256=4cfe0bcb0bb95b7e1ecdf88c050cfbbd82b9b32c336f1f2b93b194bf8430b5d4 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-12-22T17:06:05,420 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.8.1-py3-none-any.whl#sha256=c4b7e047c668f7583fbe85e90f21b815eab39cad1733505b1c9fa9a648286953 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-12-22T17:06:05,421 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.8.0-py3-none-any.whl#sha256=bbb4f0f84e2a0b2073d26eb862f18032ad294700f6a34e5075d700543a1888bb (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.7) 2025-12-22T17:06:05,422 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.7.1-py3-none-any.whl#sha256=401dc8e74a0f111e8ada11afb6a59b062ae05d2f69d4ee1aa049477185754ad1 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-12-22T17:06:05,422 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.7.0-py3-none-any.whl#sha256=e42072589209e892386434c35e11ee73f57e2ce9ef7202f2be38fc9983f83add (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-12-22T17:06:05,423 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.6.2-py3-none-any.whl#sha256=069324c14533016c09ccd15d423ad7a65e6a8ea463c1887e48105eabffb60e44 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-12-22T17:06:05,423 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.6.1-py3-none-any.whl#sha256=7e840a0978155f52c5bb4cfba0700f4fbd92a81e0c0cbbffd2e34dc7f3b1ce2a (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-12-22T17:06:05,424 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-1.1.1-py3-none-any.whl#sha256=efbeddf33264fd0ef0008d218c848ed6249c56bec37f9a839d027e68f7844ef2 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-12-22T17:06:05,424 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-1.1.0-py3-none-any.whl#sha256=9d0b85d296640a1f425dadceedd8346d063d125310af46a64507cc5b514700ae (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-12-22T17:06:05,425 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-1.0.0-py3-none-any.whl#sha256=fa36efe075f457b421d5f8c71d6e98dde224a349ec7437e2ec3778680cdf27e9 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2025-12-22T17:06:05,425 Skipping link: not a file: https://www.piwheels.org/simple/biobb-dna/ 2025-12-22T17:06:05,426 Skipping link: not a file: https://pypi.org/simple/biobb-dna/ 2025-12-22T17:06:05,447 Given no hashes to check 1 links for project 'biobb-dna': discarding no candidates 2025-12-22T17:06:05,465 Collecting biobb-dna==5.2.0 2025-12-22T17:06:05,468 Created temporary directory: /tmp/pip-unpack-6rss0qvd 2025-12-22T17:06:05,677 Downloading biobb_dna-5.2.0.tar.gz (41 kB) 2025-12-22T17:06:05,831 Added biobb-dna==5.2.0 from https://files.pythonhosted.org/packages/2c/15/f96fb7fa7dd26282561d01ca504eaacc8e00240586ff894b0435dfe977a6/biobb_dna-5.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-pxocvogm' 2025-12-22T17:06:05,833 Running setup.py (path:/tmp/pip-wheel-uh9ud2w_/biobb-dna_9d765de128b24d5281ebc6bdb6e82486/setup.py) egg_info for package biobb-dna 2025-12-22T17:06:05,834 Created temporary directory: /tmp/pip-pip-egg-info-x4blr8ym 2025-12-22T17:06:05,834 Preparing metadata (setup.py): started 2025-12-22T17:06:05,836 Running command python setup.py egg_info 2025-12-22T17:06:06,679 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-22T17:06:06,679 !! 2025-12-22T17:06:06,680 ******************************************************************************** 2025-12-22T17:06:06,681 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-22T17:06:06,682 License :: OSI Approved :: Apache Software License 2025-12-22T17:06:06,684 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-22T17:06:06,684 ******************************************************************************** 2025-12-22T17:06:06,685 !! 2025-12-22T17:06:06,686 self._finalize_license_expression() 2025-12-22T17:06:06,709 running egg_info 2025-12-22T17:06:06,738 creating /tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info 2025-12-22T17:06:06,739 writing /tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/PKG-INFO 2025-12-22T17:06:06,742 writing dependency_links to /tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/dependency_links.txt 2025-12-22T17:06:06,744 writing entry points to /tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/entry_points.txt 2025-12-22T17:06:06,746 writing requirements to /tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/requires.txt 2025-12-22T17:06:06,747 writing top-level names to /tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/top_level.txt 2025-12-22T17:06:06,748 writing manifest file '/tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/SOURCES.txt' 2025-12-22T17:06:06,847 reading manifest file '/tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/SOURCES.txt' 2025-12-22T17:06:06,849 adding license file 'LICENSE' 2025-12-22T17:06:06,852 writing manifest file '/tmp/pip-pip-egg-info-x4blr8ym/biobb_dna.egg-info/SOURCES.txt' 2025-12-22T17:06:06,962 Preparing metadata (setup.py): finished with status 'done' 2025-12-22T17:06:06,966 Source in /tmp/pip-wheel-uh9ud2w_/biobb-dna_9d765de128b24d5281ebc6bdb6e82486 has version 5.2.0, which satisfies requirement biobb-dna==5.2.0 from https://files.pythonhosted.org/packages/2c/15/f96fb7fa7dd26282561d01ca504eaacc8e00240586ff894b0435dfe977a6/biobb_dna-5.2.0.tar.gz 2025-12-22T17:06:06,967 Removed biobb-dna==5.2.0 from https://files.pythonhosted.org/packages/2c/15/f96fb7fa7dd26282561d01ca504eaacc8e00240586ff894b0435dfe977a6/biobb_dna-5.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-pxocvogm' 2025-12-22T17:06:06,974 Created temporary directory: /tmp/pip-unpack-oizmxumn 2025-12-22T17:06:06,974 Building wheels for collected packages: biobb-dna 2025-12-22T17:06:06,979 Created temporary directory: /tmp/pip-wheel-rrytpeiz 2025-12-22T17:06:06,979 Building wheel for biobb-dna (setup.py): started 2025-12-22T17:06:06,980 Destination directory: /tmp/pip-wheel-rrytpeiz 2025-12-22T17:06:06,981 Running command python setup.py bdist_wheel 2025-12-22T17:06:07,817 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2025-12-22T17:06:07,817 !! 2025-12-22T17:06:07,818 ******************************************************************************** 2025-12-22T17:06:07,818 Please consider removing the following classifiers in favor of a SPDX license expression: 2025-12-22T17:06:07,820 License :: OSI Approved :: Apache Software License 2025-12-22T17:06:07,821 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-22T17:06:07,821 ******************************************************************************** 2025-12-22T17:06:07,823 !! 2025-12-22T17:06:07,823 self._finalize_license_expression() 2025-12-22T17:06:07,824 running bdist_wheel 2025-12-22T17:06:07,956 running build 2025-12-22T17:06:07,957 running build_py 2025-12-22T17:06:07,988 creating build/lib/biobb_dna 2025-12-22T17:06:07,990 copying biobb_dna/__init__.py -> build/lib/biobb_dna 2025-12-22T17:06:07,993 creating build/lib/biobb_dna/intrabp_correlations 2025-12-22T17:06:07,994 copying biobb_dna/intrabp_correlations/intrabpcorr.py -> build/lib/biobb_dna/intrabp_correlations 2025-12-22T17:06:07,996 copying biobb_dna/intrabp_correlations/intraseqcorr.py -> build/lib/biobb_dna/intrabp_correlations 2025-12-22T17:06:07,999 copying biobb_dna/intrabp_correlations/__init__.py -> build/lib/biobb_dna/intrabp_correlations 2025-12-22T17:06:08,001 copying biobb_dna/intrabp_correlations/intrahpcorr.py -> build/lib/biobb_dna/intrabp_correlations 2025-12-22T17:06:08,004 creating build/lib/biobb_dna/backbone 2025-12-22T17:06:08,005 copying biobb_dna/backbone/canonicalag.py -> build/lib/biobb_dna/backbone 2025-12-22T17:06:08,007 copying biobb_dna/backbone/__init__.py -> build/lib/biobb_dna/backbone 2025-12-22T17:06:08,009 copying biobb_dna/backbone/bipopulations.py -> build/lib/biobb_dna/backbone 2025-12-22T17:06:08,012 copying biobb_dna/backbone/puckering.py -> build/lib/biobb_dna/backbone 2025-12-22T17:06:08,014 creating build/lib/biobb_dna/test 2025-12-22T17:06:08,015 copying biobb_dna/test/__init__.py -> build/lib/biobb_dna/test 2025-12-22T17:06:08,017 creating build/lib/biobb_dna/dna 2025-12-22T17:06:08,018 copying biobb_dna/dna/dna_bimodality.py -> build/lib/biobb_dna/dna 2025-12-22T17:06:08,021 copying biobb_dna/dna/dna_timeseries.py -> build/lib/biobb_dna/dna 2025-12-22T17:06:08,023 copying biobb_dna/dna/__init__.py -> build/lib/biobb_dna/dna 2025-12-22T17:06:08,025 copying biobb_dna/dna/dna_timeseries_unzip.py -> build/lib/biobb_dna/dna 2025-12-22T17:06:08,027 copying biobb_dna/dna/dna_averages.py -> build/lib/biobb_dna/dna 2025-12-22T17:06:08,030 creating build/lib/biobb_dna/stiffness 2025-12-22T17:06:08,031 copying biobb_dna/stiffness/__init__.py -> build/lib/biobb_dna/stiffness 2025-12-22T17:06:08,033 copying biobb_dna/stiffness/average_stiffness.py -> build/lib/biobb_dna/stiffness 2025-12-22T17:06:08,035 copying biobb_dna/stiffness/basepair_stiffness.py -> build/lib/biobb_dna/stiffness 2025-12-22T17:06:08,038 creating build/lib/biobb_dna/utils 2025-12-22T17:06:08,039 copying biobb_dna/utils/transform.py -> build/lib/biobb_dna/utils 2025-12-22T17:06:08,041 copying biobb_dna/utils/common.py -> build/lib/biobb_dna/utils 2025-12-22T17:06:08,043 copying biobb_dna/utils/__init__.py -> build/lib/biobb_dna/utils 2025-12-22T17:06:08,044 copying biobb_dna/utils/loader.py -> build/lib/biobb_dna/utils 2025-12-22T17:06:08,046 copying biobb_dna/utils/constants.py -> build/lib/biobb_dna/utils 2025-12-22T17:06:08,048 creating build/lib/biobb_dna/interbp_correlations 2025-12-22T17:06:08,049 copying biobb_dna/interbp_correlations/interbpcorr.py -> build/lib/biobb_dna/interbp_correlations 2025-12-22T17:06:08,052 copying biobb_dna/interbp_correlations/interhpcorr.py -> build/lib/biobb_dna/interbp_correlations 2025-12-22T17:06:08,055 copying biobb_dna/interbp_correlations/__init__.py -> build/lib/biobb_dna/interbp_correlations 2025-12-22T17:06:08,057 copying biobb_dna/interbp_correlations/interseqcorr.py -> build/lib/biobb_dna/interbp_correlations 2025-12-22T17:06:08,059 creating build/lib/biobb_dna/curvesplus 2025-12-22T17:06:08,061 copying biobb_dna/curvesplus/biobb_canal.py -> build/lib/biobb_dna/curvesplus 2025-12-22T17:06:08,063 copying biobb_dna/curvesplus/__init__.py -> build/lib/biobb_dna/curvesplus 2025-12-22T17:06:08,065 copying biobb_dna/curvesplus/biobb_curves.py -> build/lib/biobb_dna/curvesplus 2025-12-22T17:06:08,068 copying biobb_dna/curvesplus/canal_unzip.py -> build/lib/biobb_dna/curvesplus 2025-12-22T17:06:08,070 copying biobb_dna/curvesplus/biobb_canion.py -> build/lib/biobb_dna/curvesplus 2025-12-22T17:06:08,079 copying biobb_dna/py.typed -> build/lib/biobb_dna 2025-12-22T17:06:08,113 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2025-12-22T17:06:08,113 !! 2025-12-22T17:06:08,114 ******************************************************************************** 2025-12-22T17:06:08,115 Please avoid running ``setup.py`` directly. 2025-12-22T17:06:08,116 Instead, use pypa/build, pypa/installer or other 2025-12-22T17:06:08,116 standards-based tools. 2025-12-22T17:06:08,118 This deprecation is overdue, please update your project and remove deprecated 2025-12-22T17:06:08,118 calls to avoid build errors in the future. 2025-12-22T17:06:08,119 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2025-12-22T17:06:08,120 ******************************************************************************** 2025-12-22T17:06:08,121 !! 2025-12-22T17:06:08,122 self.initialize_options() 2025-12-22T17:06:08,143 installing to build/bdist.linux-armv7l/wheel 2025-12-22T17:06:08,143 running install 2025-12-22T17:06:08,167 running install_lib 2025-12-22T17:06:08,195 creating build/bdist.linux-armv7l/wheel 2025-12-22T17:06:08,197 creating build/bdist.linux-armv7l/wheel/biobb_dna 2025-12-22T17:06:08,198 copying build/lib/biobb_dna/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_dna 2025-12-22T17:06:08,200 creating build/bdist.linux-armv7l/wheel/biobb_dna/intrabp_correlations 2025-12-22T17:06:08,201 copying build/lib/biobb_dna/intrabp_correlations/intrabpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-12-22T17:06:08,204 copying build/lib/biobb_dna/intrabp_correlations/intraseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-12-22T17:06:08,206 copying build/lib/biobb_dna/intrabp_correlations/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-12-22T17:06:08,208 copying build/lib/biobb_dna/intrabp_correlations/intrahpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2025-12-22T17:06:08,211 creating build/bdist.linux-armv7l/wheel/biobb_dna/backbone 2025-12-22T17:06:08,212 copying build/lib/biobb_dna/backbone/canonicalag.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-12-22T17:06:08,214 copying build/lib/biobb_dna/backbone/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-12-22T17:06:08,216 copying build/lib/biobb_dna/backbone/bipopulations.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-12-22T17:06:08,218 copying build/lib/biobb_dna/backbone/puckering.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2025-12-22T17:06:08,221 creating build/bdist.linux-armv7l/wheel/biobb_dna/test 2025-12-22T17:06:08,222 copying build/lib/biobb_dna/test/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/test 2025-12-22T17:06:08,224 creating build/bdist.linux-armv7l/wheel/biobb_dna/dna 2025-12-22T17:06:08,225 copying build/lib/biobb_dna/dna/dna_bimodality.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-12-22T17:06:08,228 copying build/lib/biobb_dna/dna/dna_timeseries.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-12-22T17:06:08,230 copying build/lib/biobb_dna/dna/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-12-22T17:06:08,232 copying build/lib/biobb_dna/dna/dna_timeseries_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-12-22T17:06:08,234 copying build/lib/biobb_dna/dna/dna_averages.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2025-12-22T17:06:08,237 copying build/lib/biobb_dna/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna 2025-12-22T17:06:08,239 creating build/bdist.linux-armv7l/wheel/biobb_dna/stiffness 2025-12-22T17:06:08,240 copying build/lib/biobb_dna/stiffness/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2025-12-22T17:06:08,242 copying build/lib/biobb_dna/stiffness/average_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2025-12-22T17:06:08,244 copying build/lib/biobb_dna/stiffness/basepair_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2025-12-22T17:06:08,247 creating build/bdist.linux-armv7l/wheel/biobb_dna/utils 2025-12-22T17:06:08,248 copying build/lib/biobb_dna/utils/transform.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-12-22T17:06:08,250 copying build/lib/biobb_dna/utils/common.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-12-22T17:06:08,252 copying build/lib/biobb_dna/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-12-22T17:06:08,254 copying build/lib/biobb_dna/utils/loader.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-12-22T17:06:08,256 copying build/lib/biobb_dna/utils/constants.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2025-12-22T17:06:08,259 creating build/bdist.linux-armv7l/wheel/biobb_dna/interbp_correlations 2025-12-22T17:06:08,260 copying build/lib/biobb_dna/interbp_correlations/interbpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-12-22T17:06:08,262 copying build/lib/biobb_dna/interbp_correlations/interhpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-12-22T17:06:08,265 copying build/lib/biobb_dna/interbp_correlations/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-12-22T17:06:08,266 copying build/lib/biobb_dna/interbp_correlations/interseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2025-12-22T17:06:08,269 creating build/bdist.linux-armv7l/wheel/biobb_dna/curvesplus 2025-12-22T17:06:08,270 copying build/lib/biobb_dna/curvesplus/biobb_canal.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-12-22T17:06:08,273 copying build/lib/biobb_dna/curvesplus/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-12-22T17:06:08,275 copying build/lib/biobb_dna/curvesplus/biobb_curves.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-12-22T17:06:08,277 copying build/lib/biobb_dna/curvesplus/canal_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-12-22T17:06:08,279 copying build/lib/biobb_dna/curvesplus/biobb_canion.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2025-12-22T17:06:08,281 running install_egg_info 2025-12-22T17:06:08,318 running egg_info 2025-12-22T17:06:08,346 writing biobb_dna.egg-info/PKG-INFO 2025-12-22T17:06:08,350 writing dependency_links to biobb_dna.egg-info/dependency_links.txt 2025-12-22T17:06:08,352 writing entry points to biobb_dna.egg-info/entry_points.txt 2025-12-22T17:06:08,354 writing requirements to biobb_dna.egg-info/requires.txt 2025-12-22T17:06:08,355 writing top-level names to biobb_dna.egg-info/top_level.txt 2025-12-22T17:06:08,395 reading manifest file 'biobb_dna.egg-info/SOURCES.txt' 2025-12-22T17:06:08,399 adding license file 'LICENSE' 2025-12-22T17:06:08,402 writing manifest file 'biobb_dna.egg-info/SOURCES.txt' 2025-12-22T17:06:08,404 Copying biobb_dna.egg-info to build/bdist.linux-armv7l/wheel/./biobb_dna-5.2.0-py3.11.egg-info 2025-12-22T17:06:08,415 running install_scripts 2025-12-22T17:06:08,429 creating build/bdist.linux-armv7l/wheel/biobb_dna-5.2.0.dist-info/WHEEL 2025-12-22T17:06:08,432 creating '/tmp/pip-wheel-rrytpeiz/biobb_dna-5.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2025-12-22T17:06:08,434 adding 'biobb_dna/__init__.py' 2025-12-22T17:06:08,435 adding 'biobb_dna/py.typed' 2025-12-22T17:06:08,437 adding 'biobb_dna/backbone/__init__.py' 2025-12-22T17:06:08,439 adding 'biobb_dna/backbone/bipopulations.py' 2025-12-22T17:06:08,441 adding 'biobb_dna/backbone/canonicalag.py' 2025-12-22T17:06:08,443 adding 'biobb_dna/backbone/puckering.py' 2025-12-22T17:06:08,444 adding 'biobb_dna/curvesplus/__init__.py' 2025-12-22T17:06:08,446 adding 'biobb_dna/curvesplus/biobb_canal.py' 2025-12-22T17:06:08,448 adding 'biobb_dna/curvesplus/biobb_canion.py' 2025-12-22T17:06:08,450 adding 'biobb_dna/curvesplus/biobb_curves.py' 2025-12-22T17:06:08,452 adding 'biobb_dna/curvesplus/canal_unzip.py' 2025-12-22T17:06:08,454 adding 'biobb_dna/dna/__init__.py' 2025-12-22T17:06:08,456 adding 'biobb_dna/dna/dna_averages.py' 2025-12-22T17:06:08,457 adding 'biobb_dna/dna/dna_bimodality.py' 2025-12-22T17:06:08,460 adding 'biobb_dna/dna/dna_timeseries.py' 2025-12-22T17:06:08,461 adding 'biobb_dna/dna/dna_timeseries_unzip.py' 2025-12-22T17:06:08,463 adding 'biobb_dna/interbp_correlations/__init__.py' 2025-12-22T17:06:08,465 adding 'biobb_dna/interbp_correlations/interbpcorr.py' 2025-12-22T17:06:08,467 adding 'biobb_dna/interbp_correlations/interhpcorr.py' 2025-12-22T17:06:08,469 adding 'biobb_dna/interbp_correlations/interseqcorr.py' 2025-12-22T17:06:08,471 adding 'biobb_dna/intrabp_correlations/__init__.py' 2025-12-22T17:06:08,473 adding 'biobb_dna/intrabp_correlations/intrabpcorr.py' 2025-12-22T17:06:08,475 adding 'biobb_dna/intrabp_correlations/intrahpcorr.py' 2025-12-22T17:06:08,476 adding 'biobb_dna/intrabp_correlations/intraseqcorr.py' 2025-12-22T17:06:08,478 adding 'biobb_dna/stiffness/__init__.py' 2025-12-22T17:06:08,480 adding 'biobb_dna/stiffness/average_stiffness.py' 2025-12-22T17:06:08,481 adding 'biobb_dna/stiffness/basepair_stiffness.py' 2025-12-22T17:06:08,483 adding 'biobb_dna/test/__init__.py' 2025-12-22T17:06:08,484 adding 'biobb_dna/utils/__init__.py' 2025-12-22T17:06:08,486 adding 'biobb_dna/utils/common.py' 2025-12-22T17:06:08,487 adding 'biobb_dna/utils/constants.py' 2025-12-22T17:06:08,488 adding 'biobb_dna/utils/loader.py' 2025-12-22T17:06:08,489 adding 'biobb_dna/utils/transform.py' 2025-12-22T17:06:08,492 adding 'biobb_dna-5.2.0.dist-info/licenses/LICENSE' 2025-12-22T17:06:08,494 adding 'biobb_dna-5.2.0.dist-info/METADATA' 2025-12-22T17:06:08,495 adding 'biobb_dna-5.2.0.dist-info/WHEEL' 2025-12-22T17:06:08,496 adding 'biobb_dna-5.2.0.dist-info/entry_points.txt' 2025-12-22T17:06:08,497 adding 'biobb_dna-5.2.0.dist-info/top_level.txt' 2025-12-22T17:06:08,498 adding 'biobb_dna-5.2.0.dist-info/RECORD' 2025-12-22T17:06:08,500 removing build/bdist.linux-armv7l/wheel 2025-12-22T17:06:08,626 Building wheel for biobb-dna (setup.py): finished with status 'done' 2025-12-22T17:06:08,629 Created wheel for biobb-dna: filename=biobb_dna-5.2.0-py3-none-any.whl size=74912 sha256=5858ca7c5c47c83572b4b93cf27402ebc2cabe1952267784e80b19b9b794723a 2025-12-22T17:06:08,630 Stored in directory: /tmp/pip-ephem-wheel-cache-tk0fw_b5/wheels/30/77/e6/85d572cfa3ea9a71cb5843eebe73b638aaf84c71c5b25356fd 2025-12-22T17:06:08,643 Successfully built biobb-dna 2025-12-22T17:06:08,648 Removed build tracker: '/tmp/pip-build-tracker-pxocvogm'