2025-12-29T19:19:19,061 Created temporary directory: /tmp/pip-ephem-wheel-cache-gmy5uvsk
2025-12-29T19:19:19,063 Created temporary directory: /tmp/pip-build-tracker-2jp84y6y
2025-12-29T19:19:19,064 Initialized build tracking at /tmp/pip-build-tracker-2jp84y6y
2025-12-29T19:19:19,064 Created build tracker: /tmp/pip-build-tracker-2jp84y6y
2025-12-29T19:19:19,065 Entered build tracker: /tmp/pip-build-tracker-2jp84y6y
2025-12-29T19:19:19,066 Created temporary directory: /tmp/pip-wheel-zhaa2q27
2025-12-29T19:19:19,068 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-29T19:19:19,071 Created temporary directory: /tmp/pip-ephem-wheel-cache-zyjt1o_4
2025-12-29T19:19:19,095 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-29T19:19:19,098 2 location(s) to search for versions of biocutils:
2025-12-29T19:19:19,098 * https://pypi.org/simple/biocutils/
2025-12-29T19:19:19,098 * https://www.piwheels.org/simple/biocutils/
2025-12-29T19:19:19,099 Fetching project page and analyzing links: https://pypi.org/simple/biocutils/
2025-12-29T19:19:19,100 Getting page https://pypi.org/simple/biocutils/
2025-12-29T19:19:19,101 Found index url https://pypi.org/simple
2025-12-29T19:19:19,315 Fetched page https://pypi.org/simple/biocutils/ as application/vnd.pypi.simple.v1+json
2025-12-29T19:19:19,323   Found link https://files.pythonhosted.org/packages/65/92/c409f2ae26598bcfc7b77e78fcf4224a50fc26c209f7b7311f8589b92f9c/biocutils-0.0.1.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.1
2025-12-29T19:19:19,323   Found link https://files.pythonhosted.org/packages/b5/a0/29c24b56973501ca65d10dd6e17dfb13efb1d510e9fbbe920f6010058463/biocutils-0.0.2.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.2
2025-12-29T19:19:19,324   Found link https://files.pythonhosted.org/packages/46/3a/5c48dbdf6e2a0d4fa049a0d1e8f97f33a38f11f8880c328e65273956df07/biocutils-0.0.3.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.3
2025-12-29T19:19:19,325   Found link https://files.pythonhosted.org/packages/66/7f/e0f5c762a3a6960dc54ee89637389d7d6395dd18e7b9dcf4596bb0babec1/biocutils-0.0.4.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.4
2025-12-29T19:19:19,326   Found link https://files.pythonhosted.org/packages/1c/b6/125205832da97a68904d82248e293cb1f0a9440cb78efeedf038ee822e9b/biocutils-0.0.5.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.5
2025-12-29T19:19:19,326   Found link https://files.pythonhosted.org/packages/d6/de/49335b740de844993c6251dead61523f12ba5df37c95b6f1c5deea48cf98/biocutils-0.0.6.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.6
2025-12-29T19:19:19,327   Found link https://files.pythonhosted.org/packages/73/ee/469b39221caf0f043478901805f4c5a206e6773c69dd976c7e3d6f98f207/biocutils-0.0.7.tar.gz (from https://pypi.org/simple/biocutils/), version: 0.0.7
2025-12-29T19:19:19,328   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/e3/01/4b9e88a00cd8fa7bf310908febf68f0c00e09963de329be4cfc4d7167d40/biocutils-0.1.0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,329   Found link https://files.pythonhosted.org/packages/b5/78/8c917210ac5d2b3909a6d6bc546bfe2350eeab43528fe8fb89665a41f7c8/biocutils-0.1.0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.0
2025-12-29T19:19:19,329   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/15/05/f65279dcc93aa8648638fa536315670c68febbfc14dc999c5a72eeaab1b3/biocutils-0.1.1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,330   Found link https://files.pythonhosted.org/packages/f3/69/f41cbf20f8851854010bffdf107b4014ac7a3996959880f573a9d2e6924f/biocutils-0.1.1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.1
2025-12-29T19:19:19,331   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/1d/df/012402da66dcb5761aa8de40829aafbae60a6741d5bdb4dde1ed55f76a11/biocutils-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,332   Found link https://files.pythonhosted.org/packages/77/6b/a362d065d306ad6c54513a9f56fdd1b850361bcd5c25ee7c593624bc1c13/biocutils-0.1.2.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.2
2025-12-29T19:19:19,333   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/e9/8d/58e40042afbda2bd54e0e8721f8afa1be1d5373f468734dc282bc9e2c59f/biocutils-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,334   Found link https://files.pythonhosted.org/packages/e0/9b/5bbcd4c5b501fec2442093e5272107792e486796c555380050163924b876/biocutils-0.1.3.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.3
2025-12-29T19:19:19,334   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/07/ce/fbf0d8f1075e88bb9ae78eb1ad71c51a3bc5973925d904b118c14508ca69/biocutils-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,335   Found link https://files.pythonhosted.org/packages/6e/ad/9d39af1df08e21d76535f4b2d5987aae154cc2836c991ebce0862c28861c/biocutils-0.1.4.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.4
2025-12-29T19:19:19,336   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/e6/34/f0e8e18500b77895351d7e8d5c0632d80862cd8f236303222f6990856e47/biocutils-0.1.5-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,336   Found link https://files.pythonhosted.org/packages/4a/e1/91e24dfb0b4108753b08db95269737b0269f6716b2c5b3afd862bed4c54b/biocutils-0.1.5.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.5
2025-12-29T19:19:19,337   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/5c/64/1e544efee5bdb8ec8cacc51c05904e8c707ecec87d97206c7ed8a940ebba/biocutils-0.1.6-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,338   Found link https://files.pythonhosted.org/packages/86/8b/8e00e2ea4a2e25642e0d6105798a72bd9586d5a979ff38be00bf3fad8f0f/biocutils-0.1.6.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.6
2025-12-29T19:19:19,339   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/bc/ed/8c87ab2dcdb92518ca5bc2f281b5ff3dc25ec6719093a92b24eaa4e42981/biocutils-0.1.7-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,340   Found link https://files.pythonhosted.org/packages/ca/2b/ecbb0867f3d0c02c17f03f82d627c7fde159f335c01d1fd99fb092fda6c8/biocutils-0.1.7.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.8), version: 0.1.7
2025-12-29T19:19:19,341   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/b2/67/1acd43fa2fae2a2845005deeef78c6a1ddcb72e3b71aa4f4a17275f7083c/biocutils-0.2.0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,341   Found link https://files.pythonhosted.org/packages/e8/3e/54723a762363692e060e66972c7d4768dc9d0d1c335842ccb897e3b94de7/biocutils-0.2.0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.0
2025-12-29T19:19:19,342   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/da/a8/06df99c38a6a9715f65f07d0803b67d63f9e49835cd16518bef31f6f9da9/biocutils-0.2.1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,343   Found link https://files.pythonhosted.org/packages/ed/c8/7929e3ad5fb235021efdbb536fa721854ed9c154bfceaad8c018244e42f7/biocutils-0.2.1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.1
2025-12-29T19:19:19,344   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/16/45/70ac20e09eaf043968fb92d0db3468ef29c593e83275418ea2905a9959dc/biocutils-0.2.2-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,345   Found link https://files.pythonhosted.org/packages/0c/e9/15a148fda2fddefb873a6c09ea484e206aeb59d71c0e661a377e12181f95/biocutils-0.2.2.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.2
2025-12-29T19:19:19,345   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/23/f7/a5e64053786509f7bc0b5b77fbb68709035c219f72e35e3103351a21ee60/biocutils-0.2.3-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,346   Found link https://files.pythonhosted.org/packages/59/cb/404e7da59034accc8ea57771e73d471c5f291d2e2e74e13201f1b3d5d398/biocutils-0.2.3.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.2.3
2025-12-29T19:19:19,347   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/cf/c9/3a1985ee38cc4f05404f67150f713824ed9ea2ae44ac32b020ffee120064/biocutils-0.3.0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,347   Found link https://files.pythonhosted.org/packages/6c/f7/b9e4cbdcf1223c36329f4c698b9057998acba8cc94a32ce9bb8993eb36fa/biocutils-0.3.0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.0
2025-12-29T19:19:19,348   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/86/ff/4c54292edf023bf241e242c5b4d1cb793e1be4055c21580df61cecf7dc8a/biocutils-0.3.1.dev0-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,349   Found link https://files.pythonhosted.org/packages/50/ce/171fa5fa5596c84823512d4ec1680e03ac01ed0992725c795ae1c431c80b/biocutils-0.3.1.dev0.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.1.dev0
2025-12-29T19:19:19,350   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/2d/55/7febc5df686bd94e51eafcca73a5bdbc060c120f7f9b74980598dea60448/biocutils-0.3.1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,351   Found link https://files.pythonhosted.org/packages/d7/c3/9f6ce9426d06f3afb8881bf032179054a430330924aed71614a0ced089f8/biocutils-0.3.1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.1
2025-12-29T19:19:19,352   Skipping link: No binaries permitted for biocutils: https://files.pythonhosted.org/packages/71/f2/d59c6a769f851b84bebd7f51881d09b5b2ad6fc82f0efe8c7b4c71bf91ca/biocutils-0.3.2.dev1-py3-none-any.whl (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,352   Found link https://files.pythonhosted.org/packages/d8/36/e89155ff064d8612214f66d0519fdd0348f4f0db3454854240c29cc7f03a/biocutils-0.3.2.dev1.tar.gz (from https://pypi.org/simple/biocutils/) (requires-python:>=3.9), version: 0.3.2.dev1
2025-12-29T19:19:19,353 Fetching project page and analyzing links: https://www.piwheels.org/simple/biocutils/
2025-12-29T19:19:19,354 Getting page https://www.piwheels.org/simple/biocutils/
2025-12-29T19:19:19,355 Found index url https://www.piwheels.org/simple
2025-12-29T19:19:19,513 Fetched page https://www.piwheels.org/simple/biocutils/ as text/html
2025-12-29T19:19:19,520   Skipping link: No binaries permitted for biocutils: https://www.piwheels.org/simple/biocutils/biocutils-0.3.2.dev1-py3-none-any.whl#sha256=ab72be7375101851234b6beaf11a1edc6ded62203bf46c916124f4fb1ac47cfc (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,521   Skipping link: No binaries permitted for biocutils: https://www.piwheels.org/simple/biocutils/biocutils-0.3.0-py3-none-any.whl#sha256=d05729cdab04a59a14cfd89e1170d1e4d0143fc012c750b80a358af9d56f62cd (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,522   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.2.3-py3-none-any.whl#sha256=fd61c5324e4bf51b8a30e68430de9bd1fbc337b1a96a5151577f70b9853e0456 (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,522   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.2.2-py3-none-any.whl#sha256=92e839bdc8a6fa1f14ddc2ef5fb1299d14174f1c746a8cd460530af6311562bd (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,522   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.2.1-py3-none-any.whl#sha256=5e7922524f562543134c0561b5d8e0a27073b320121ae726b86b94b9338fd32f (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,523   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.2.0-py3-none-any.whl#sha256=e74dda4432c92dea7c36152890bdca06090777e294922c3a4ed8efe23444f9dd (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.9)
2025-12-29T19:19:19,523   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.7-py3-none-any.whl#sha256=800b9a5433c9fa102c2c89c4502e7c242928bebb98a304f648c4ba9fa0ac4a20 (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,524   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.6-py3-none-any.whl#sha256=355832c5064d8081a2ae7ae9d3d57cabbb0c2d30f7f803f3793e2b6a66ca1a8b (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,524   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.5-py3-none-any.whl#sha256=673e16232fe3901865a9c56f4833255ebf205c87de5de826758aaf36c8e2967b (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,525   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.4-py3-none-any.whl#sha256=ace4bbf4b8a54557ed131ea61b55b071522cd87ec2e1b697bfc960dcf5b2e94e (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,526   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.3-py3-none-any.whl#sha256=9ab54dd911cd1b899fcd72efb23e2e8cf89c479b3badbdc4e70e06c6a72d884d (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,526   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.2-py3-none-any.whl#sha256=330553ba98c11d889d3e38669ea105a54bb2cb5f366229e5551adbd4851ae386 (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,527   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.1-py3-none-any.whl#sha256=e34542aaa8fe59518b1e4d9e4e4817d90dae04b7a5b4fae116c3ff29abbddd1d (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,527   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.1.0-py3-none-any.whl#sha256=f95b610d20534b2c8fa73233e65147f29c41f2ce695a6dde3a6fa0f8235511f5 (from https://www.piwheels.org/simple/biocutils/) (requires-python:>=3.8)
2025-12-29T19:19:19,528   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.7-py3-none-any.whl#sha256=a443ab0c991aebd5249c0ac238f5c08436cec95c9f60023721e9c64d7f2e0dc3 (from https://www.piwheels.org/simple/biocutils/)
2025-12-29T19:19:19,529   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.6-py3-none-any.whl#sha256=acc67f8b6d674fc917b3b659f767c6a6c2bfd61d79cac9ca9bf40bbe9d82e05f (from https://www.piwheels.org/simple/biocutils/)
2025-12-29T19:19:19,529   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.5-py3-none-any.whl#sha256=0c4c52db0fdfbd7afa0c77ae6eb1eefc30d09228b2d57bb1b94a93c496b09f61 (from https://www.piwheels.org/simple/biocutils/)
2025-12-29T19:19:19,530   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.4-py3-none-any.whl#sha256=150341828dba726d243d2d7e2f667339bd79aad4d739e57fd0bfc075952fb424 (from https://www.piwheels.org/simple/biocutils/)
2025-12-29T19:19:19,530   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.3-py3-none-any.whl#sha256=0be924d197b4e8bea234f3c671bc1052b3301537cd48b3b3e47e6995c7c36a19 (from https://www.piwheels.org/simple/biocutils/)
2025-12-29T19:19:19,530   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.2-py3-none-any.whl#sha256=7d22a0f780a38f49955bb884da3b497013be3a71854d1dfdb886c12a8a9dd297 (from https://www.piwheels.org/simple/biocutils/)
2025-12-29T19:19:19,531   Skipping link: No binaries permitted for biocutils: https://archive1.piwheels.org/simple/biocutils/biocutils-0.0.1-py3-none-any.whl#sha256=cc3cc12cf8b4082333fbb52b468fe7fe9b5c87bc34cd2d46a9e99219e3acf9b5 (from https://www.piwheels.org/simple/biocutils/)
2025-12-29T19:19:19,531 Skipping link: not a file: https://www.piwheels.org/simple/biocutils/
2025-12-29T19:19:19,532 Skipping link: not a file: https://pypi.org/simple/biocutils/
2025-12-29T19:19:19,553 Given no hashes to check 1 links for project 'biocutils': discarding no candidates
2025-12-29T19:19:19,571 Collecting biocutils==0.3.1.dev0
2025-12-29T19:19:19,574   Created temporary directory: /tmp/pip-unpack-1q752ugh
2025-12-29T19:19:19,707   Downloading biocutils-0.3.1.dev0.tar.gz (63 kB)
2025-12-29T19:19:19,936   Added biocutils==0.3.1.dev0 from https://files.pythonhosted.org/packages/50/ce/171fa5fa5596c84823512d4ec1680e03ac01ed0992725c795ae1c431c80b/biocutils-0.3.1.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-2jp84y6y'
2025-12-29T19:19:19,941   Created temporary directory: /tmp/pip-build-env-bx3tghlc
2025-12-29T19:19:19,946   Installing build dependencies: started
2025-12-29T19:19:19,947   Running command pip subprocess to install build dependencies
2025-12-29T19:19:21,090   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-12-29T19:19:21,741   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-29T19:19:21,765   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-29T19:19:23,555   Collecting setuptools>=46.1.0
2025-12-29T19:19:23,665     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-12-29T19:19:24,086   Collecting setuptools_scm[toml]>=5
2025-12-29T19:19:24,107     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB)
2025-12-29T19:19:24,295   Collecting packaging>=20
2025-12-29T19:19:24,317     Using cached https://www.piwheels.org/simple/packaging/packaging-25.0-py3-none-any.whl (66 kB)
2025-12-29T19:19:27,341   Installing collected packages: setuptools, packaging, setuptools_scm
2025-12-29T19:19:31,818     Creating /tmp/pip-build-env-bx3tghlc/overlay/local/bin
2025-12-29T19:19:31,820     changing mode of /tmp/pip-build-env-bx3tghlc/overlay/local/bin/setuptools-scm to 755
2025-12-29T19:19:31,845   Successfully installed packaging-25.0 setuptools-80.9.0 setuptools_scm-9.2.2
2025-12-29T19:19:32,130   Installing build dependencies: finished with status 'done'
2025-12-29T19:19:32,137   Getting requirements to build wheel: started
2025-12-29T19:19:32,138   Running command Getting requirements to build wheel
2025-12-29T19:19:32,885   running egg_info
2025-12-29T19:19:32,893   writing src/biocutils.egg-info/PKG-INFO
2025-12-29T19:19:32,898   writing dependency_links to src/biocutils.egg-info/dependency_links.txt
2025-12-29T19:19:32,902   writing requirements to src/biocutils.egg-info/requires.txt
2025-12-29T19:19:32,903   writing top-level names to src/biocutils.egg-info/top_level.txt
2025-12-29T19:19:32,964   listing git files failed - pretending there aren't any
2025-12-29T19:19:32,969   reading manifest file 'src/biocutils.egg-info/SOURCES.txt'
2025-12-29T19:19:32,978   adding license file 'LICENSE.txt'
2025-12-29T19:19:32,984   writing manifest file 'src/biocutils.egg-info/SOURCES.txt'
2025-12-29T19:19:33,079   Getting requirements to build wheel: finished with status 'done'
2025-12-29T19:19:33,082   Created temporary directory: /tmp/pip-modern-metadata-tn2636qq
2025-12-29T19:19:33,085   Preparing metadata (pyproject.toml): started
2025-12-29T19:19:33,086   Running command Preparing metadata (pyproject.toml)
2025-12-29T19:19:33,799   running dist_info
2025-12-29T19:19:33,814   creating /tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info
2025-12-29T19:19:33,815   writing /tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info/PKG-INFO
2025-12-29T19:19:33,820   writing dependency_links to /tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info/dependency_links.txt
2025-12-29T19:19:33,824   writing requirements to /tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info/requires.txt
2025-12-29T19:19:33,825   writing top-level names to /tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info/top_level.txt
2025-12-29T19:19:33,826   writing manifest file '/tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info/SOURCES.txt'
2025-12-29T19:19:33,884   listing git files failed - pretending there aren't any
2025-12-29T19:19:33,888   reading manifest file '/tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info/SOURCES.txt'
2025-12-29T19:19:33,891   adding license file 'LICENSE.txt'
2025-12-29T19:19:33,896   writing manifest file '/tmp/pip-modern-metadata-tn2636qq/biocutils.egg-info/SOURCES.txt'
2025-12-29T19:19:33,897   creating '/tmp/pip-modern-metadata-tn2636qq/biocutils-0.3.1.dev0.dist-info'
2025-12-29T19:19:34,037   Preparing metadata (pyproject.toml): finished with status 'done'
2025-12-29T19:19:34,042   Source in /tmp/pip-wheel-zhaa2q27/biocutils_c1c0bef2e5ba4c2d912f999bb132e73f has version 0.3.1.dev0, which satisfies requirement biocutils==0.3.1.dev0 from https://files.pythonhosted.org/packages/50/ce/171fa5fa5596c84823512d4ec1680e03ac01ed0992725c795ae1c431c80b/biocutils-0.3.1.dev0.tar.gz
2025-12-29T19:19:34,043   Removed biocutils==0.3.1.dev0 from https://files.pythonhosted.org/packages/50/ce/171fa5fa5596c84823512d4ec1680e03ac01ed0992725c795ae1c431c80b/biocutils-0.3.1.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-2jp84y6y'
2025-12-29T19:19:34,048 Created temporary directory: /tmp/pip-unpack-n291ebu6
2025-12-29T19:19:34,049 Building wheels for collected packages: biocutils
2025-12-29T19:19:34,053   Created temporary directory: /tmp/pip-wheel-ujummitj
2025-12-29T19:19:34,054   Destination directory: /tmp/pip-wheel-ujummitj
2025-12-29T19:19:34,056   Building wheel for biocutils (pyproject.toml): started
2025-12-29T19:19:34,057   Running command Building wheel for biocutils (pyproject.toml)
2025-12-29T19:19:34,729   running bdist_wheel
2025-12-29T19:19:34,764   running build
2025-12-29T19:19:34,765   running build_py
2025-12-29T19:19:34,777   creating build/lib/biocutils
2025-12-29T19:19:34,779   copying src/biocutils/assign_rows.py -> build/lib/biocutils
2025-12-29T19:19:34,997   copying src/biocutils/boolean_list.py -> build/lib/biocutils
2025-12-29T19:19:34,999   copying src/biocutils/assign.py -> build/lib/biocutils
2025-12-29T19:19:35,001   copying src/biocutils/subset.py -> build/lib/biocutils
2025-12-29T19:19:35,003   copying src/biocutils/integer_list.py -> build/lib/biocutils
2025-12-29T19:19:35,005   copying src/biocutils/subset_rows.py -> build/lib/biocutils
2025-12-29T19:19:35,007   copying src/biocutils/reverse_index.py -> build/lib/biocutils
2025-12-29T19:19:35,009   copying src/biocutils/print_truncated.py -> build/lib/biocutils
2025-12-29T19:19:35,012   copying src/biocutils/extract_row_names.py -> build/lib/biocutils
2025-12-29T19:19:35,013   copying src/biocutils/combine.py -> build/lib/biocutils
2025-12-29T19:19:35,015   copying src/biocutils/package_utils.py -> build/lib/biocutils
2025-12-29T19:19:35,017   copying src/biocutils/__init__.py -> build/lib/biocutils
2025-12-29T19:19:35,019   copying src/biocutils/combine_sequences.py -> build/lib/biocutils
2025-12-29T19:19:35,021   copying src/biocutils/intersect.py -> build/lib/biocutils
2025-12-29T19:19:35,023   copying src/biocutils/bioc_object.py -> build/lib/biocutils
2025-12-29T19:19:35,025   copying src/biocutils/table.py -> build/lib/biocutils
2025-12-29T19:19:35,027   copying src/biocutils/combine_rows.py -> build/lib/biocutils
2025-12-29T19:19:35,029   copying src/biocutils/which.py -> build/lib/biocutils
2025-12-29T19:19:35,031   copying src/biocutils/assign_sequence.py -> build/lib/biocutils
2025-12-29T19:19:35,033   copying src/biocutils/map_to_index.py -> build/lib/biocutils
2025-12-29T19:19:35,036   copying src/biocutils/show_as_cell.py -> build/lib/biocutils
2025-12-29T19:19:35,038   copying src/biocutils/_utils_combine.py -> build/lib/biocutils
2025-12-29T19:19:35,040   copying src/biocutils/named_list.py -> build/lib/biocutils
2025-12-29T19:19:35,044   copying src/biocutils/is_list_of_type.py -> build/lib/biocutils
2025-12-29T19:19:35,047   copying src/biocutils/print_wrapped_table.py -> build/lib/biocutils
2025-12-29T19:19:35,051   copying src/biocutils/match.py -> build/lib/biocutils
2025-12-29T19:19:35,053   copying src/biocutils/normalize_subscript.py -> build/lib/biocutils
2025-12-29T19:19:35,056   copying src/biocutils/relaxed_combine_columns.py -> build/lib/biocutils
2025-12-29T19:19:35,058   copying src/biocutils/extract_column_names.py -> build/lib/biocutils
2025-12-29T19:19:35,060   copying src/biocutils/convert_to_dense.py -> build/lib/biocutils
2025-12-29T19:19:35,062   copying src/biocutils/is_high_dimensional.py -> build/lib/biocutils
2025-12-29T19:19:35,064   copying src/biocutils/combine_columns.py -> build/lib/biocutils
2025-12-29T19:19:35,065   copying src/biocutils/string_list.py -> build/lib/biocutils
2025-12-29T19:19:35,067   copying src/biocutils/names.py -> build/lib/biocutils
2025-12-29T19:19:35,070   copying src/biocutils/union.py -> build/lib/biocutils
2025-12-29T19:19:35,072   copying src/biocutils/get_height.py -> build/lib/biocutils
2025-12-29T19:19:35,074   copying src/biocutils/float_list.py -> build/lib/biocutils
2025-12-29T19:19:35,076   copying src/biocutils/relaxed_combine_rows.py -> build/lib/biocutils
2025-12-29T19:19:35,078   copying src/biocutils/factorize.py -> build/lib/biocutils
2025-12-29T19:19:35,080   copying src/biocutils/is_missing_scalar.py -> build/lib/biocutils
2025-12-29T19:19:35,082   copying src/biocutils/subset_sequence.py -> build/lib/biocutils
2025-12-29T19:19:35,084   copying src/biocutils/factor.py -> build/lib/biocutils
2025-12-29T19:19:35,087   running egg_info
2025-12-29T19:19:35,101   writing src/biocutils.egg-info/PKG-INFO
2025-12-29T19:19:35,106   writing dependency_links to src/biocutils.egg-info/dependency_links.txt
2025-12-29T19:19:35,109   writing requirements to src/biocutils.egg-info/requires.txt
2025-12-29T19:19:35,110   writing top-level names to src/biocutils.egg-info/top_level.txt
2025-12-29T19:19:35,150   listing git files failed - pretending there aren't any
2025-12-29T19:19:35,154   reading manifest file 'src/biocutils.egg-info/SOURCES.txt'
2025-12-29T19:19:35,161   adding license file 'LICENSE.txt'
2025-12-29T19:19:35,168   writing manifest file 'src/biocutils.egg-info/SOURCES.txt'
2025-12-29T19:19:35,190   installing to build/bdist.linux-armv7l/wheel
2025-12-29T19:19:35,190   running install
2025-12-29T19:19:35,213   running install_lib
2025-12-29T19:19:35,223   creating build/bdist.linux-armv7l/wheel
2025-12-29T19:19:35,225   creating build/bdist.linux-armv7l/wheel/biocutils
2025-12-29T19:19:35,227   copying build/lib/biocutils/assign_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,449   copying build/lib/biocutils/boolean_list.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,451   copying build/lib/biocutils/assign.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,453   copying build/lib/biocutils/subset.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,454   copying build/lib/biocutils/integer_list.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,456   copying build/lib/biocutils/subset_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,458   copying build/lib/biocutils/reverse_index.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,460   copying build/lib/biocutils/print_truncated.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,462   copying build/lib/biocutils/extract_row_names.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,464   copying build/lib/biocutils/combine.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,465   copying build/lib/biocutils/package_utils.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,467   copying build/lib/biocutils/__init__.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,469   copying build/lib/biocutils/combine_sequences.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,471   copying build/lib/biocutils/intersect.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,473   copying build/lib/biocutils/bioc_object.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,475   copying build/lib/biocutils/table.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,477   copying build/lib/biocutils/combine_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,479   copying build/lib/biocutils/which.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,481   copying build/lib/biocutils/assign_sequence.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,483   copying build/lib/biocutils/map_to_index.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,485   copying build/lib/biocutils/show_as_cell.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,488   copying build/lib/biocutils/_utils_combine.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,490   copying build/lib/biocutils/named_list.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,493   copying build/lib/biocutils/is_list_of_type.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,496   copying build/lib/biocutils/print_wrapped_table.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,498   copying build/lib/biocutils/match.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,500   copying build/lib/biocutils/normalize_subscript.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,502   copying build/lib/biocutils/relaxed_combine_columns.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,504   copying build/lib/biocutils/extract_column_names.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,506   copying build/lib/biocutils/convert_to_dense.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,508   copying build/lib/biocutils/is_high_dimensional.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,509   copying build/lib/biocutils/combine_columns.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,511   copying build/lib/biocutils/string_list.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,513   copying build/lib/biocutils/names.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,516   copying build/lib/biocutils/union.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,518   copying build/lib/biocutils/get_height.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,520   copying build/lib/biocutils/float_list.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,522   copying build/lib/biocutils/relaxed_combine_rows.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,526   copying build/lib/biocutils/factorize.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,529   copying build/lib/biocutils/is_missing_scalar.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,531   copying build/lib/biocutils/subset_sequence.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,533   copying build/lib/biocutils/factor.py -> build/bdist.linux-armv7l/wheel/./biocutils
2025-12-29T19:19:35,536   running install_egg_info
2025-12-29T19:19:35,547   Copying src/biocutils.egg-info to build/bdist.linux-armv7l/wheel/./biocutils-0.3.1.dev0-py3.11.egg-info
2025-12-29T19:19:35,561   running install_scripts
2025-12-29T19:19:35,572   creating build/bdist.linux-armv7l/wheel/biocutils-0.3.1.dev0.dist-info/WHEEL
2025-12-29T19:19:35,575   creating '/tmp/pip-wheel-ujummitj/.tmp-l4meh4f5/biocutils-0.3.1.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-12-29T19:19:35,578   adding 'biocutils/__init__.py'
2025-12-29T19:19:35,579   adding 'biocutils/_utils_combine.py'
2025-12-29T19:19:35,581   adding 'biocutils/assign.py'
2025-12-29T19:19:35,582   adding 'biocutils/assign_rows.py'
2025-12-29T19:19:35,583   adding 'biocutils/assign_sequence.py'
2025-12-29T19:19:35,585   adding 'biocutils/bioc_object.py'
2025-12-29T19:19:35,586   adding 'biocutils/boolean_list.py'
2025-12-29T19:19:35,588   adding 'biocutils/combine.py'
2025-12-29T19:19:35,589   adding 'biocutils/combine_columns.py'
2025-12-29T19:19:35,590   adding 'biocutils/combine_rows.py'
2025-12-29T19:19:35,592   adding 'biocutils/combine_sequences.py'
2025-12-29T19:19:35,593   adding 'biocutils/convert_to_dense.py'
2025-12-29T19:19:35,594   adding 'biocutils/extract_column_names.py'
2025-12-29T19:19:35,595   adding 'biocutils/extract_row_names.py'
2025-12-29T19:19:35,599   adding 'biocutils/factor.py'
2025-12-29T19:19:35,601   adding 'biocutils/factorize.py'
2025-12-29T19:19:35,602   adding 'biocutils/float_list.py'
2025-12-29T19:19:35,603   adding 'biocutils/get_height.py'
2025-12-29T19:19:35,605   adding 'biocutils/integer_list.py'
2025-12-29T19:19:35,606   adding 'biocutils/intersect.py'
2025-12-29T19:19:35,607   adding 'biocutils/is_high_dimensional.py'
2025-12-29T19:19:35,609   adding 'biocutils/is_list_of_type.py'
2025-12-29T19:19:35,610   adding 'biocutils/is_missing_scalar.py'
2025-12-29T19:19:35,611   adding 'biocutils/map_to_index.py'
2025-12-29T19:19:35,613   adding 'biocutils/match.py'
2025-12-29T19:19:35,616   adding 'biocutils/named_list.py'
2025-12-29T19:19:35,618   adding 'biocutils/names.py'
2025-12-29T19:19:35,620   adding 'biocutils/normalize_subscript.py'
2025-12-29T19:19:35,621   adding 'biocutils/package_utils.py'
2025-12-29T19:19:35,623   adding 'biocutils/print_truncated.py'
2025-12-29T19:19:35,625   adding 'biocutils/print_wrapped_table.py'
2025-12-29T19:19:35,627   adding 'biocutils/relaxed_combine_columns.py'
2025-12-29T19:19:35,629   adding 'biocutils/relaxed_combine_rows.py'
2025-12-29T19:19:35,630   adding 'biocutils/reverse_index.py'
2025-12-29T19:19:35,632   adding 'biocutils/show_as_cell.py'
2025-12-29T19:19:35,633   adding 'biocutils/string_list.py'
2025-12-29T19:19:35,635   adding 'biocutils/subset.py'
2025-12-29T19:19:35,636   adding 'biocutils/subset_rows.py'
2025-12-29T19:19:35,637   adding 'biocutils/subset_sequence.py'
2025-12-29T19:19:35,638   adding 'biocutils/table.py'
2025-12-29T19:19:35,639   adding 'biocutils/union.py'
2025-12-29T19:19:35,641   adding 'biocutils/which.py'
2025-12-29T19:19:35,643   adding 'biocutils-0.3.1.dev0.dist-info/licenses/LICENSE.txt'
2025-12-29T19:19:35,644   adding 'biocutils-0.3.1.dev0.dist-info/METADATA'
2025-12-29T19:19:35,645   adding 'biocutils-0.3.1.dev0.dist-info/WHEEL'
2025-12-29T19:19:35,646   adding 'biocutils-0.3.1.dev0.dist-info/top_level.txt'
2025-12-29T19:19:35,647   adding 'biocutils-0.3.1.dev0.dist-info/RECORD'
2025-12-29T19:19:35,650   removing build/bdist.linux-armv7l/wheel
2025-12-29T19:19:35,778   Building wheel for biocutils (pyproject.toml): finished with status 'done'
2025-12-29T19:19:35,783   Created wheel for biocutils: filename=biocutils-0.3.1.dev0-py3-none-any.whl size=50222 sha256=315994eed8ce05cad74a49b26550c6e1c7b51101da538adcfcda3714ed127609
2025-12-29T19:19:35,785   Stored in directory: /tmp/pip-ephem-wheel-cache-zyjt1o_4/wheels/7d/a4/d2/f209a9e5015ce1db71d6084e223bb6a7ccc684874697eddebc
2025-12-29T19:19:35,795 Successfully built biocutils
2025-12-29T19:19:35,800 Removed build tracker: '/tmp/pip-build-tracker-2jp84y6y'