2025-12-30T09:58:22,510 Created temporary directory: /tmp/pip-ephem-wheel-cache-dy1eex3v
2025-12-30T09:58:22,512 Created temporary directory: /tmp/pip-build-tracker-lp0a04n0
2025-12-30T09:58:22,513 Initialized build tracking at /tmp/pip-build-tracker-lp0a04n0
2025-12-30T09:58:22,513 Created build tracker: /tmp/pip-build-tracker-lp0a04n0
2025-12-30T09:58:22,513 Entered build tracker: /tmp/pip-build-tracker-lp0a04n0
2025-12-30T09:58:22,514 Created temporary directory: /tmp/pip-wheel-ovej7kaf
2025-12-30T09:58:22,517 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-30T09:58:22,520 Created temporary directory: /tmp/pip-ephem-wheel-cache-qt0o6v6q
2025-12-30T09:58:22,546 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-30T09:58:22,550 2 location(s) to search for versions of phylogenie:
2025-12-30T09:58:22,550 * https://pypi.org/simple/phylogenie/
2025-12-30T09:58:22,550 * https://www.piwheels.org/simple/phylogenie/
2025-12-30T09:58:22,551 Fetching project page and analyzing links: https://pypi.org/simple/phylogenie/
2025-12-30T09:58:22,551 Getting page https://pypi.org/simple/phylogenie/
2025-12-30T09:58:22,553 Found index url https://pypi.org/simple
2025-12-30T09:58:22,689 Fetched page https://pypi.org/simple/phylogenie/ as application/vnd.pypi.simple.v1+json
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2025-12-30T09:58:22,714   Found link https://files.pythonhosted.org/packages/f5/f9/714d94a24ed368a4c32e7623ca82fff034e4eeb5a8dc0ab9aa9423b13009/phylogenie-1.0.0.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 1.0.0
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2025-12-30T09:58:22,717   Found link https://files.pythonhosted.org/packages/8e/4d/5824d4dbfc08dba97939d0f0367c3931b408a56bb1f0561ba53b908002cb/phylogenie-1.0.1.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 1.0.1
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2025-12-30T09:58:22,738   Found link https://files.pythonhosted.org/packages/90/6c/ef681b0b4581ea3d2dc5a18f2f49f35781df295b26cd2033014bc523be7b/phylogenie-2.0.4.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 2.0.4
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2025-12-30T09:58:22,739   Found link https://files.pythonhosted.org/packages/c2/f9/d3acdb5ea361eb718530a92189664bb163dde61a82496d0279e90a76b5ea/phylogenie-2.0.5.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 2.0.5
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2025-12-30T09:58:22,741   Found link https://files.pythonhosted.org/packages/cd/22/383e751df07d35f53c01d8972ccefdd5bb4a89cb7788361e2917887fd7ed/phylogenie-2.0.6.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:<4.0,>=3.10), version: 2.0.6
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2025-12-30T09:58:22,829   Found link https://files.pythonhosted.org/packages/06/97/fe53ee2a610d239839c9dcff2f27890fc10e6ae2482cce8a91a3aacd090b/phylogenie-3.1.10.tar.gz (from https://pypi.org/simple/phylogenie/) (requires-python:>=3.10), version: 3.1.10
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2025-12-30T09:58:23,030   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-2.0.6-py3-none-any.whl#sha256=f2c01985e26531c9cc14587e79fe66f8012d529d097026335843d5b4a8834c46 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,030   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-2.0.5-py3-none-any.whl#sha256=af587601266662adce3651039125ef70ddd91fb2e9dd69c21c1ff0604ca4c76d (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,030   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-2.0.4-py3-none-any.whl#sha256=b1fba6e8b59e66c59445eb77253ad9e1fe8e368e0a8d1981479fe46210494582 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,031   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-2.0.3-py3-none-any.whl#sha256=811dc7a7d0b0702e447c78fe84d63b17bc0eeaa8bf98bcd556d36a248633ac4a (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,031   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-2.0.2-py3-none-any.whl#sha256=9eeefb99b8788a6a7170b35dae91dc8bfb714b66b98b08cd35aacd4136020aad (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,032   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-2.0.1-py3-none-any.whl#sha256=3587a29ad97852a4f646e51a63f386ebe300c90f57a5fbf949387074171962f9 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,033   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-2.0.0-py3-none-any.whl#sha256=57216ee245baa347439d8f017d6a19a680a925314cd5943162374a8d0b6699b8 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,033   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.8-py3-none-any.whl#sha256=9ed9867c86b7258eacaf75cdc52511c32267dbc2684eeebc08a0b8f3432e0a54 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,034   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.7-py3-none-any.whl#sha256=05153412e143d9e09742de0cbb684857aac7eabc1dc82bd73b4be409fad646c1 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
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2025-12-30T09:58:23,035   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.5-py3-none-any.whl#sha256=44eb8d3714277f483a1010c46925f0e51ce5fbcaffead847be6cd5e51bac170f (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,036   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.4-py3-none-any.whl#sha256=44d458332c5ab36c22d0c77c559987eb9f80ce84b4c88acc79533e5871a6b406 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
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2025-12-30T09:58:23,037   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.2-py3-none-any.whl#sha256=d23def6419d49da378586dfec1f52629f6b0992eea4239230e873b2351d9ce77 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,037   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.1-py3-none-any.whl#sha256=1eab55d4c55447f99880b7aae8f4087a193021ce90f4997d484917dce40f39d3 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,038   Skipping link: No binaries permitted for phylogenie: https://archive1.piwheels.org/simple/phylogenie/phylogenie-1.0.0-py3-none-any.whl#sha256=f047168c355546977470455eb8bdfbaa999d6c8ddf72b6a51d980727a420a857 (from https://www.piwheels.org/simple/phylogenie/) (requires-python:>=3.10,<4.0)
2025-12-30T09:58:23,038 Skipping link: not a file: https://www.piwheels.org/simple/phylogenie/
2025-12-30T09:58:23,039 Skipping link: not a file: https://pypi.org/simple/phylogenie/
2025-12-30T09:58:23,065 Given no hashes to check 1 links for project 'phylogenie': discarding no candidates
2025-12-30T09:58:23,084 Collecting phylogenie==3.1.10
2025-12-30T09:58:23,086   Created temporary directory: /tmp/pip-unpack-nu3e86ve
2025-12-30T09:58:23,305   Downloading phylogenie-3.1.10.tar.gz (33 kB)
2025-12-30T09:58:23,404   Added phylogenie==3.1.10 from https://files.pythonhosted.org/packages/06/97/fe53ee2a610d239839c9dcff2f27890fc10e6ae2482cce8a91a3aacd090b/phylogenie-3.1.10.tar.gz to build tracker '/tmp/pip-build-tracker-lp0a04n0'
2025-12-30T09:58:23,408   Created temporary directory: /tmp/pip-build-env-0d4p9ffj
2025-12-30T09:58:23,412   Installing build dependencies: started
2025-12-30T09:58:23,414   Running command pip subprocess to install build dependencies
2025-12-30T09:58:24,768   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2025-12-30T09:58:25,426   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2025-12-30T09:58:25,449   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2025-12-30T09:58:27,204   Collecting setuptools>=42
2025-12-30T09:58:27,297     Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB)
2025-12-30T09:58:30,337   Installing collected packages: setuptools
2025-12-30T09:58:34,119   Successfully installed setuptools-80.9.0
2025-12-30T09:58:34,386   Installing build dependencies: finished with status 'done'
2025-12-30T09:58:34,393   Getting requirements to build wheel: started
2025-12-30T09:58:34,394   Running command Getting requirements to build wheel
2025-12-30T09:58:35,088   running egg_info
2025-12-30T09:58:35,095   writing src/phylogenie.egg-info/PKG-INFO
2025-12-30T09:58:35,099   writing dependency_links to src/phylogenie.egg-info/dependency_links.txt
2025-12-30T09:58:35,101   writing entry points to src/phylogenie.egg-info/entry_points.txt
2025-12-30T09:58:35,102   writing requirements to src/phylogenie.egg-info/requires.txt
2025-12-30T09:58:35,104   writing top-level names to src/phylogenie.egg-info/top_level.txt
2025-12-30T09:58:35,131   reading manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-30T09:58:35,135   adding license file 'LICENSE.txt'
2025-12-30T09:58:35,139   writing manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-30T09:58:35,237   Getting requirements to build wheel: finished with status 'done'
2025-12-30T09:58:35,240   Created temporary directory: /tmp/pip-modern-metadata-73xfrpvi
2025-12-30T09:58:35,242   Preparing metadata (pyproject.toml): started
2025-12-30T09:58:35,243   Running command Preparing metadata (pyproject.toml)
2025-12-30T09:58:35,883   running dist_info
2025-12-30T09:58:35,895   creating /tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info
2025-12-30T09:58:35,896   writing /tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/PKG-INFO
2025-12-30T09:58:35,899   writing dependency_links to /tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/dependency_links.txt
2025-12-30T09:58:35,901   writing entry points to /tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/entry_points.txt
2025-12-30T09:58:35,902   writing requirements to /tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/requires.txt
2025-12-30T09:58:35,903   writing top-level names to /tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/top_level.txt
2025-12-30T09:58:35,904   writing manifest file '/tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/SOURCES.txt'
2025-12-30T09:58:35,928   reading manifest file '/tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/SOURCES.txt'
2025-12-30T09:58:35,930   adding license file 'LICENSE.txt'
2025-12-30T09:58:35,934   writing manifest file '/tmp/pip-modern-metadata-73xfrpvi/phylogenie.egg-info/SOURCES.txt'
2025-12-30T09:58:35,935   creating '/tmp/pip-modern-metadata-73xfrpvi/phylogenie-3.1.10.dist-info'
2025-12-30T09:58:36,060   Preparing metadata (pyproject.toml): finished with status 'done'
2025-12-30T09:58:36,066   Source in /tmp/pip-wheel-ovej7kaf/phylogenie_c373a80e8417465cb0792749244103b2 has version 3.1.10, which satisfies requirement phylogenie==3.1.10 from https://files.pythonhosted.org/packages/06/97/fe53ee2a610d239839c9dcff2f27890fc10e6ae2482cce8a91a3aacd090b/phylogenie-3.1.10.tar.gz
2025-12-30T09:58:36,067   Removed phylogenie==3.1.10 from https://files.pythonhosted.org/packages/06/97/fe53ee2a610d239839c9dcff2f27890fc10e6ae2482cce8a91a3aacd090b/phylogenie-3.1.10.tar.gz from build tracker '/tmp/pip-build-tracker-lp0a04n0'
2025-12-30T09:58:36,072 Created temporary directory: /tmp/pip-unpack-wgjbjse0
2025-12-30T09:58:36,073 Building wheels for collected packages: phylogenie
2025-12-30T09:58:36,077   Created temporary directory: /tmp/pip-wheel-8r64fjk2
2025-12-30T09:58:36,077   Destination directory: /tmp/pip-wheel-8r64fjk2
2025-12-30T09:58:36,080   Building wheel for phylogenie (pyproject.toml): started
2025-12-30T09:58:36,081   Running command Building wheel for phylogenie (pyproject.toml)
2025-12-30T09:58:36,707   running bdist_wheel
2025-12-30T09:58:36,729   running build
2025-12-30T09:58:36,730   running build_py
2025-12-30T09:58:36,737   creating build/lib/phylogenie
2025-12-30T09:58:36,739   copying src/phylogenie/draw.py -> build/lib/phylogenie
2025-12-30T09:58:36,742   copying src/phylogenie/__init__.py -> build/lib/phylogenie
2025-12-30T09:58:36,744   copying src/phylogenie/typeguards.py -> build/lib/phylogenie
2025-12-30T09:58:36,747   copying src/phylogenie/main.py -> build/lib/phylogenie
2025-12-30T09:58:36,749   copying src/phylogenie/mixins.py -> build/lib/phylogenie
2025-12-30T09:58:36,751   copying src/phylogenie/typings.py -> build/lib/phylogenie
2025-12-30T09:58:36,753   copying src/phylogenie/msa.py -> build/lib/phylogenie
2025-12-30T09:58:36,757   creating build/lib/phylogenie/generators
2025-12-30T09:58:36,758   copying src/phylogenie/generators/alisim.py -> build/lib/phylogenie/generators
2025-12-30T09:58:36,760   copying src/phylogenie/generators/__init__.py -> build/lib/phylogenie/generators
2025-12-30T09:58:36,762   copying src/phylogenie/generators/typeguards.py -> build/lib/phylogenie/generators
2025-12-30T09:58:36,764   copying src/phylogenie/generators/dataset.py -> build/lib/phylogenie/generators
2025-12-30T09:58:36,767   copying src/phylogenie/generators/factories.py -> build/lib/phylogenie/generators
2025-12-30T09:58:36,770   copying src/phylogenie/generators/trees.py -> build/lib/phylogenie/generators
2025-12-30T09:58:36,772   copying src/phylogenie/generators/configs.py -> build/lib/phylogenie/generators
2025-12-30T09:58:36,774   creating build/lib/phylogenie/io
2025-12-30T09:58:36,776   copying src/phylogenie/io/__init__.py -> build/lib/phylogenie/io
2025-12-30T09:58:36,777   copying src/phylogenie/io/fasta.py -> build/lib/phylogenie/io
2025-12-30T09:58:36,780   creating build/lib/phylogenie/treesimulator
2025-12-30T09:58:36,781   copying src/phylogenie/treesimulator/__init__.py -> build/lib/phylogenie/treesimulator
2025-12-30T09:58:36,783   copying src/phylogenie/treesimulator/gillespie.py -> build/lib/phylogenie/treesimulator
2025-12-30T09:58:36,785   copying src/phylogenie/treesimulator/model.py -> build/lib/phylogenie/treesimulator
2025-12-30T09:58:36,788   copying src/phylogenie/treesimulator/utils.py -> build/lib/phylogenie/treesimulator
2025-12-30T09:58:36,790   copying src/phylogenie/treesimulator/tree.py -> build/lib/phylogenie/treesimulator
2025-12-30T09:58:36,793   copying src/phylogenie/treesimulator/features.py -> build/lib/phylogenie/treesimulator
2025-12-30T09:58:36,796   creating build/lib/phylogenie/skyline
2025-12-30T09:58:36,797   copying src/phylogenie/skyline/__init__.py -> build/lib/phylogenie/skyline
2025-12-30T09:58:36,799   copying src/phylogenie/skyline/matrix.py -> build/lib/phylogenie/skyline
2025-12-30T09:58:36,802   copying src/phylogenie/skyline/vector.py -> build/lib/phylogenie/skyline
2025-12-30T09:58:36,805   copying src/phylogenie/skyline/parameter.py -> build/lib/phylogenie/skyline
2025-12-30T09:58:36,807   creating build/lib/phylogenie/treesimulator/io
2025-12-30T09:58:36,808   copying src/phylogenie/treesimulator/io/newick.py -> build/lib/phylogenie/treesimulator/io
2025-12-30T09:58:36,810   copying src/phylogenie/treesimulator/io/__init__.py -> build/lib/phylogenie/treesimulator/io
2025-12-30T09:58:36,812   copying src/phylogenie/treesimulator/io/nexus.py -> build/lib/phylogenie/treesimulator/io
2025-12-30T09:58:36,815   creating build/lib/phylogenie/treesimulator/events
2025-12-30T09:58:36,816   copying src/phylogenie/treesimulator/events/base.py -> build/lib/phylogenie/treesimulator/events
2025-12-30T09:58:36,818   copying src/phylogenie/treesimulator/events/mutations.py -> build/lib/phylogenie/treesimulator/events
2025-12-30T09:58:36,820   copying src/phylogenie/treesimulator/events/contact_tracing.py -> build/lib/phylogenie/treesimulator/events
2025-12-30T09:58:36,822   copying src/phylogenie/treesimulator/events/__init__.py -> build/lib/phylogenie/treesimulator/events
2025-12-30T09:58:36,824   copying src/phylogenie/treesimulator/events/core.py -> build/lib/phylogenie/treesimulator/events
2025-12-30T09:58:36,826   running egg_info
2025-12-30T09:58:36,837   writing src/phylogenie.egg-info/PKG-INFO
2025-12-30T09:58:36,840   writing dependency_links to src/phylogenie.egg-info/dependency_links.txt
2025-12-30T09:58:36,842   writing entry points to src/phylogenie.egg-info/entry_points.txt
2025-12-30T09:58:36,843   writing requirements to src/phylogenie.egg-info/requires.txt
2025-12-30T09:58:36,844   writing top-level names to src/phylogenie.egg-info/top_level.txt
2025-12-30T09:58:36,859   reading manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-30T09:58:36,863   adding license file 'LICENSE.txt'
2025-12-30T09:58:36,868   writing manifest file 'src/phylogenie.egg-info/SOURCES.txt'
2025-12-30T09:58:36,873   copying src/phylogenie/py.typed -> build/lib/phylogenie
2025-12-30T09:58:36,888   installing to build/bdist.linux-armv7l/wheel
2025-12-30T09:58:36,889   running install
2025-12-30T09:58:36,913   running install_lib
2025-12-30T09:58:36,919   creating build/bdist.linux-armv7l/wheel
2025-12-30T09:58:36,922   creating build/bdist.linux-armv7l/wheel/phylogenie
2025-12-30T09:58:36,924   creating build/bdist.linux-armv7l/wheel/phylogenie/generators
2025-12-30T09:58:36,925   copying build/lib/phylogenie/generators/alisim.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-30T09:58:36,927   copying build/lib/phylogenie/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-30T09:58:36,929   copying build/lib/phylogenie/generators/typeguards.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-30T09:58:36,931   copying build/lib/phylogenie/generators/dataset.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-30T09:58:36,933   copying build/lib/phylogenie/generators/factories.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-30T09:58:36,935   copying build/lib/phylogenie/generators/trees.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-30T09:58:36,938   copying build/lib/phylogenie/generators/configs.py -> build/bdist.linux-armv7l/wheel/./phylogenie/generators
2025-12-30T09:58:36,940   creating build/bdist.linux-armv7l/wheel/phylogenie/io
2025-12-30T09:58:36,941   copying build/lib/phylogenie/io/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/io
2025-12-30T09:58:36,943   copying build/lib/phylogenie/io/fasta.py -> build/bdist.linux-armv7l/wheel/./phylogenie/io
2025-12-30T09:58:36,944   copying build/lib/phylogenie/draw.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:36,947   copying build/lib/phylogenie/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:36,949   copying build/lib/phylogenie/typeguards.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:36,951   copying build/lib/phylogenie/py.typed -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:36,953   creating build/bdist.linux-armv7l/wheel/phylogenie/treesimulator
2025-12-30T09:58:36,955   creating build/bdist.linux-armv7l/wheel/phylogenie/treesimulator/io
2025-12-30T09:58:36,956   copying build/lib/phylogenie/treesimulator/io/newick.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/io
2025-12-30T09:58:36,958   copying build/lib/phylogenie/treesimulator/io/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/io
2025-12-30T09:58:36,959   copying build/lib/phylogenie/treesimulator/io/nexus.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/io
2025-12-30T09:58:36,961   copying build/lib/phylogenie/treesimulator/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-30T09:58:36,963   copying build/lib/phylogenie/treesimulator/gillespie.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-30T09:58:36,966   creating build/bdist.linux-armv7l/wheel/phylogenie/treesimulator/events
2025-12-30T09:58:36,967   copying build/lib/phylogenie/treesimulator/events/base.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-30T09:58:36,969   copying build/lib/phylogenie/treesimulator/events/mutations.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-30T09:58:36,971   copying build/lib/phylogenie/treesimulator/events/contact_tracing.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-30T09:58:36,973   copying build/lib/phylogenie/treesimulator/events/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-30T09:58:36,975   copying build/lib/phylogenie/treesimulator/events/core.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator/events
2025-12-30T09:58:36,977   copying build/lib/phylogenie/treesimulator/model.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-30T09:58:36,979   copying build/lib/phylogenie/treesimulator/utils.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-30T09:58:36,981   copying build/lib/phylogenie/treesimulator/tree.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-30T09:58:36,984   copying build/lib/phylogenie/treesimulator/features.py -> build/bdist.linux-armv7l/wheel/./phylogenie/treesimulator
2025-12-30T09:58:36,986   copying build/lib/phylogenie/main.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:36,988   copying build/lib/phylogenie/mixins.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:36,990   creating build/bdist.linux-armv7l/wheel/phylogenie/skyline
2025-12-30T09:58:36,991   copying build/lib/phylogenie/skyline/__init__.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-30T09:58:36,993   copying build/lib/phylogenie/skyline/matrix.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-30T09:58:36,995   copying build/lib/phylogenie/skyline/vector.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-30T09:58:36,997   copying build/lib/phylogenie/skyline/parameter.py -> build/bdist.linux-armv7l/wheel/./phylogenie/skyline
2025-12-30T09:58:36,999   copying build/lib/phylogenie/typings.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:37,001   copying build/lib/phylogenie/msa.py -> build/bdist.linux-armv7l/wheel/./phylogenie
2025-12-30T09:58:37,003   running install_egg_info
2025-12-30T09:58:37,009   Copying src/phylogenie.egg-info to build/bdist.linux-armv7l/wheel/./phylogenie-3.1.10-py3.11.egg-info
2025-12-30T09:58:37,020   running install_scripts
2025-12-30T09:58:37,031   creating build/bdist.linux-armv7l/wheel/phylogenie-3.1.10.dist-info/WHEEL
2025-12-30T09:58:37,034   creating '/tmp/pip-wheel-8r64fjk2/.tmp-tawhfe0f/phylogenie-3.1.10-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2025-12-30T09:58:37,037   adding 'phylogenie/__init__.py'
2025-12-30T09:58:37,039   adding 'phylogenie/draw.py'
2025-12-30T09:58:37,041   adding 'phylogenie/main.py'
2025-12-30T09:58:37,042   adding 'phylogenie/mixins.py'
2025-12-30T09:58:37,044   adding 'phylogenie/msa.py'
2025-12-30T09:58:37,045   adding 'phylogenie/py.typed'
2025-12-30T09:58:37,046   adding 'phylogenie/typeguards.py'
2025-12-30T09:58:37,048   adding 'phylogenie/typings.py'
2025-12-30T09:58:37,049   adding 'phylogenie/generators/__init__.py'
2025-12-30T09:58:37,051   adding 'phylogenie/generators/alisim.py'
2025-12-30T09:58:37,052   adding 'phylogenie/generators/configs.py'
2025-12-30T09:58:37,053   adding 'phylogenie/generators/dataset.py'
2025-12-30T09:58:37,055   adding 'phylogenie/generators/factories.py'
2025-12-30T09:58:37,057   adding 'phylogenie/generators/trees.py'
2025-12-30T09:58:37,058   adding 'phylogenie/generators/typeguards.py'
2025-12-30T09:58:37,060   adding 'phylogenie/io/__init__.py'
2025-12-30T09:58:37,061   adding 'phylogenie/io/fasta.py'
2025-12-30T09:58:37,063   adding 'phylogenie/skyline/__init__.py'
2025-12-30T09:58:37,064   adding 'phylogenie/skyline/matrix.py'
2025-12-30T09:58:37,066   adding 'phylogenie/skyline/parameter.py'
2025-12-30T09:58:37,068   adding 'phylogenie/skyline/vector.py'
2025-12-30T09:58:37,070   adding 'phylogenie/treesimulator/__init__.py'
2025-12-30T09:58:37,071   adding 'phylogenie/treesimulator/features.py'
2025-12-30T09:58:37,072   adding 'phylogenie/treesimulator/gillespie.py'
2025-12-30T09:58:37,074   adding 'phylogenie/treesimulator/model.py'
2025-12-30T09:58:37,075   adding 'phylogenie/treesimulator/tree.py'
2025-12-30T09:58:37,077   adding 'phylogenie/treesimulator/utils.py'
2025-12-30T09:58:37,078   adding 'phylogenie/treesimulator/events/__init__.py'
2025-12-30T09:58:37,080   adding 'phylogenie/treesimulator/events/base.py'
2025-12-30T09:58:37,081   adding 'phylogenie/treesimulator/events/contact_tracing.py'
2025-12-30T09:58:37,083   adding 'phylogenie/treesimulator/events/core.py'
2025-12-30T09:58:37,084   adding 'phylogenie/treesimulator/events/mutations.py'
2025-12-30T09:58:37,086   adding 'phylogenie/treesimulator/io/__init__.py'
2025-12-30T09:58:37,087   adding 'phylogenie/treesimulator/io/newick.py'
2025-12-30T09:58:37,088   adding 'phylogenie/treesimulator/io/nexus.py'
2025-12-30T09:58:37,091   adding 'phylogenie-3.1.10.dist-info/licenses/LICENSE.txt'
2025-12-30T09:58:37,092   adding 'phylogenie-3.1.10.dist-info/METADATA'
2025-12-30T09:58:37,093   adding 'phylogenie-3.1.10.dist-info/WHEEL'
2025-12-30T09:58:37,095   adding 'phylogenie-3.1.10.dist-info/entry_points.txt'
2025-12-30T09:58:37,096   adding 'phylogenie-3.1.10.dist-info/top_level.txt'
2025-12-30T09:58:37,097   adding 'phylogenie-3.1.10.dist-info/RECORD'
2025-12-30T09:58:37,099   removing build/bdist.linux-armv7l/wheel
2025-12-30T09:58:37,209   Building wheel for phylogenie (pyproject.toml): finished with status 'done'
2025-12-30T09:58:37,214   Created wheel for phylogenie: filename=phylogenie-3.1.10-py3-none-any.whl size=42727 sha256=6e1fef1dbd43864a0b7af3c6bcfa816d60f57edf0c433c3f105293db017bbf29
2025-12-30T09:58:37,215   Stored in directory: /tmp/pip-ephem-wheel-cache-qt0o6v6q/wheels/8d/c4/ed/ddf6055f3dc2b729f5f62b7909763c1b69149f1d412109f0d9
2025-12-30T09:58:37,227 Successfully built phylogenie
2025-12-30T09:58:37,231 Removed build tracker: '/tmp/pip-build-tracker-lp0a04n0'