2025-12-30T10:21:13,415 Created temporary directory: /tmp/pip-ephem-wheel-cache-1kv67803 2025-12-30T10:21:13,418 Created temporary directory: /tmp/pip-build-tracker-6sdotecf 2025-12-30T10:21:13,418 Initialized build tracking at /tmp/pip-build-tracker-6sdotecf 2025-12-30T10:21:13,419 Created build tracker: /tmp/pip-build-tracker-6sdotecf 2025-12-30T10:21:13,419 Entered build tracker: /tmp/pip-build-tracker-6sdotecf 2025-12-30T10:21:13,420 Created temporary directory: /tmp/pip-wheel-xxbtxyv9 2025-12-30T10:21:13,423 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-30T10:21:13,426 Created temporary directory: /tmp/pip-ephem-wheel-cache-62q4jsg7 2025-12-30T10:21:13,450 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-30T10:21:13,453 2 location(s) to search for versions of viennarna: 2025-12-30T10:21:13,453 * https://pypi.org/simple/viennarna/ 2025-12-30T10:21:13,453 * https://www.piwheels.org/simple/viennarna/ 2025-12-30T10:21:13,454 Fetching project page and analyzing links: https://pypi.org/simple/viennarna/ 2025-12-30T10:21:13,455 Getting page https://pypi.org/simple/viennarna/ 2025-12-30T10:21:13,456 Found index url https://pypi.org/simple 2025-12-30T10:21:13,597 Fetched page https://pypi.org/simple/viennarna/ as application/vnd.pypi.simple.v1+json 2025-12-30T10:21:13,632 Found link https://files.pythonhosted.org/packages/77/72/75bb8baeebb7112f80e8561a3e31edef5d108309900e6cc409d4ced943cf/ViennaRNA-2.5.0a5.tar.gz (from https://pypi.org/simple/viennarna/), version: 2.5.0a5 2025-12-30T10:21:13,633 Found link https://files.pythonhosted.org/packages/82/c0/576a5423bb28d496f75bedad46a8edeafaef439c2573d56d2340c525dc8e/ViennaRNA-2.6.2a0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2a0 2025-12-30T10:21:13,634 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/56/d7/4be5f10eed2081a3bd54b8ba051159d3d05432eecd58c83b72f535b76e21/ViennaRNA-2.6.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,635 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/fa/1b4d9474cff058f4e23ce3dffc2c8cc6fa7aa980782f44324fbeeabb55f0/ViennaRNA-2.6.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,635 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/b2/9eeacfc00e825ca78aabc27ead72c32b2056e74d784846e66c80549f8bc3/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,636 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/f3/9c602f1c4e7cf2bb95c31bba8b4908f2ddf862204aceb999377b1e76a263/ViennaRNA-2.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,637 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b9/50/273d56b829109ec99f52a3250d5975969ea92f8a1d1fe569460a8505a067/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,638 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4e/c3/d1d4388ce289b97970f762a68cfd7821971b80e2c2a56c3e7c091485c966/ViennaRNA-2.6.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,638 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fa/c1/b794e68d98c1b7a204e4e5da625e9953f83a3c554d19689d9a1108a1d9fb/ViennaRNA-2.6.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,639 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/45/e9b08e19992bec9300ffb94cd49f7ea974912cee94de5d4dd0b10697d0d7/ViennaRNA-2.6.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,640 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/38/c8/71736f66a09668eaef822836989f72781dd8ae12f4d0303170445429889c/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,640 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/70/56/bf9b92ad84d1aa0b31265d9a14c58ffcaa236ae460c4365737145bb12489/ViennaRNA-2.6.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,641 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ba/69/db7732e6870f2f25c62edbc619cffc645394a8d54e6f8a928961036d78e1/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,641 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/04/c1/f5c82621ad6b749fd552d59de22f520f908277dd976f4d5a33f367d30de8/ViennaRNA-2.6.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,642 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/3e/5b5dec4d557b9f654c71b89f7aad42a7f9fc4c7c87f1a9fa68e5a51b3163/ViennaRNA-2.6.2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,642 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/b9/89a9e6c7c919b641718d3a60d15cbf4b66862df180079ca0e5a8f418a6f0/ViennaRNA-2.6.2-cp38-cp38-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,643 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/47/04/470fb66f45780ae342dcd0c39fd3cb01e4fc59ea95066ba04c3d5e5f0f7d/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,644 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/ce/2ada9ed900e320fa7ed9bac4fb2a505e16b83a9116e21ec66958885b5f90/ViennaRNA-2.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,644 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3b/5e/16bbe0cda15be9dd038dbe30b3fb53d8f8edc21c5121f67bc594934b196c/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,645 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/66/7f/56eb458650c056b8c1ed6e22185238926e7836b5701d357ef896ce5abb33/ViennaRNA-2.6.2-cp38-cp38-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,646 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/3297531f48acfdeeb4f10083d0d7d7e5f7af06e7905ac2061344ccac6022/ViennaRNA-2.6.2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,646 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/36/44/ac509347ec8f9b9c5cb69f4adc993b6f782bab7ed63639a1645450bb5d1c/ViennaRNA-2.6.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,647 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b8/34/89df39d5162afa18e7f487cb110d8aa8ae936d909b42e3be398e1c41b758/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,648 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/0f/c33a98d884ada4b9c7478bed87eb0c66de9da9ecc45babf7604e652d7e36/ViennaRNA-2.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,648 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e6/57/7f28f32fa5b43507cd5d4b871fa8d5a43645db2acaf94a028c31b7dd1d8b/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,649 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3f/a7/fe40da076361a3c71467bcdbba0fc42bab89b4561869c966ffa2539dc942/ViennaRNA-2.6.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,650 Found link https://files.pythonhosted.org/packages/b3/73/44904c687790f2d9e151caf4dc6f1a97eb1beb5da1d089a79784abefa4a2/ViennaRNA-2.6.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.2 2025-12-30T10:21:13,650 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a3/9e/1e2ae50082ea8589f06adc18fd9d4ba5d5eceeaf11fdb00a507a7633a6c5/ViennaRNA-2.6.3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,651 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5f/8f/c4b456b1d535ca3a5f5647e038f5ec9fab5925482fb538fcba51f2bc6a44/ViennaRNA-2.6.3-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,652 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/86/ceb1b342925dedb6a9e5fd4eddf3c66f3c511e42c4a8e34aa20aa04b6ed5/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,652 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6c/c7/373786745bf38c4a76662c103222151f55d33f7a0862bf557fdb95578526/ViennaRNA-2.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,653 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/05/67326020bf4fb1f0b1326933453e8e41a36c3bfdea6b8cf87a07bcb3daf4/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,653 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/48/2f/e59a3b66f4ca9abc6e2aa2cd8ec21d1539d133756ebfbe8dfd2f3b591199/ViennaRNA-2.6.3-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,654 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7a/9f/8c2cb862e732bd3c2d8920a912cf8924605c62e97bcbcda002f83d533ff6/ViennaRNA-2.6.3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,654 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/23/08/678c1fa8bd1c355fecfd9375434cfb452bdf1d9d5eb67147c2a8f2f0b85f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,666 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/08/71/4cf098294da264cadbd1e35e25f5664b37278ce4640ff983f9a48a4b442f/ViennaRNA-2.6.3-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,666 Found link https://files.pythonhosted.org/packages/3b/c9/0f29227b21be07188d7eca38fdc1d4a8f5aff444e2301f635b48c5a9212a/ViennaRNA-2.6.3.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.6.3 2025-12-30T10:21:13,667 Skipping link: No binaries permitted for viennarna: 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(requires-python:>=3.8) 2025-12-30T10:21:13,689 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/33/2c/5d41c389079a165f2d73812fb2533144db7dc7590c9d0ce3652155ac0ae8/ViennaRNA-2.7.0-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,689 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/55/fd/ad23121002ef91e3d7d2b47ea0e41fd5d944948814bf2e11202714ef6e31/ViennaRNA-2.7.0-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,690 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/74/81/e580f0a9e176384b10fd87a71733d02d0bdcc55338ccee192c17d279be36/ViennaRNA-2.7.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,690 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/6f/ec/cbeb6f5c8d9cf2929002864b31a3ae9e8ec07ecd15518c643343abc6dcd5/ViennaRNA-2.7.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,696 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/03/2f/73ea7b15dc226f120dbc89f3f4bb40b6a5a26ac969898255f22123a94d1a/ViennaRNA-2.7.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,697 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/73/7b48aa6529fb27a38a7b32c1ed7f5be8194bb665c939db5506cb8f52edf5/ViennaRNA-2.7.0-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,697 Skipping link: No binaries permitted for viennarna: 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https://files.pythonhosted.org/packages/97/c8/ba889f0a455e9cb41e52bb5a6617a1ab88d114e25ca797c436816f7cf311/ViennaRNA-2.7.0-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,699 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/2e/f9/136bcb00c5169b53299a6c65ffb9572c76c142c578d251b121aaffdc0773/ViennaRNA-2.7.0-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,700 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7d/61/44e8f1be14dee657b1d0faa617c1dfd6b288cb739c4c3fbf9a7832305e22/ViennaRNA-2.7.0-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,700 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/33/c4/d969033090c802b96b766fc85b61457a290d5f38c03e7686f229aef8ba71/ViennaRNA-2.7.0-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,701 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/5e/d1/85916f237369640fc85aff22392ecf4fb19355c200190da2ae5772ed6aa1/ViennaRNA-2.7.0-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,702 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/31/ee/658f195f7f744d01d8d5261262c17257778bd62bf8e407c83ef207fb17b7/ViennaRNA-2.7.0-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,702 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/11/2f/73850d076dd208fde88585e498ba4a66672edae3d0a593f1ab0fb0888c3d/ViennaRNA-2.7.0-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,703 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/aa/62/ad8d49122f8cf0a687dfcf48d97493a2ed1dae38cb4f1784eb8483abf6ca/ViennaRNA-2.7.0-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,703 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f0/b6/2ec5f887d6dee750503935dab31121321734c58060684dd8db4a269ee272/ViennaRNA-2.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,704 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ef/25/b254e7c48f851be16e69d3ed8f7b67922353a870490533b1512b85e06b7c/ViennaRNA-2.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,705 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fc/0a/9b26bc69f08d555493d44a89583dd6a7238db2c12187cbcbc42575558664/ViennaRNA-2.7.0-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,705 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c9/1a/3f7fa8d4659a5c39212b3423a075569958a51888e51dae3c3f690bc34e8d/ViennaRNA-2.7.0-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,706 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/42/ca/caed18628b4b2ecb04e03eb61598432050104f2d75b1a2f5b2868274b20f/ViennaRNA-2.7.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,707 Found link https://files.pythonhosted.org/packages/86/94/c65cfb4666efed90fc0fc241ee646054c5f1f7d16e83a39ab43ce7dfbe35/viennarna-2.7.0.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.7.0 2025-12-30T10:21:13,707 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d1/17/970acf06e27b858bf9ef7e6712f8236dbe2505409740ecefe7a0a0be713d/viennarna-2.7.1-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,708 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/49/ce/d5d141c474cc11936961d073c553ba89e25eaf3ceb7b16d4b69c28034638/viennarna-2.7.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,708 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c1/77/b02ac2de972f96af3cabc9cd1f149b3e0156171be64797cfb455c6ef536a/viennarna-2.7.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,709 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b4/3f/c382081902201de41cb8860c6ff70704c143e55205926bf53ccf6aae252a/viennarna-2.7.1-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,710 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/18/6f/3b823539ae66b644356a42db014fcda6b517022a2bfdeae8dbb35edad294/viennarna-2.7.1-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,710 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/c5/58/3a7621760b25cb9fd0efb7240860cf081f2318419a72bc26b94d5f70dcc3/viennarna-2.7.1-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,711 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a0/d9/0f9c85f36a93cf15d672d9c018f80ccca577e0996a80c76327f09cabb760/viennarna-2.7.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,712 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0f/ae/08edb7dc2cecbed982237b939f768940f677caff08de4ce597dee6f28b00/viennarna-2.7.1-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,712 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/35/be/cbb351a84b1427b481145fd03a7ad3d4ede3bf57b21e8656436e60a33529/viennarna-2.7.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,713 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9e/83/619574750e1fe29312c0a35e26c08f95bb6b143e4df3fb51298b958f8925/viennarna-2.7.1-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,714 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a7/6e/e6dea401481bed8c29d251d4809a42005ded049019615fadcc72429ada75/viennarna-2.7.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,714 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7c/35/753130b43675e4bf5c73e22b4411848b99e29a8e773c87b122d674ce4450/viennarna-2.7.1-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,714 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/15/19/c32f91593540fb566ae51bc5081b2304b6237bcdb31be5f7fc516a1150a3/viennarna-2.7.1-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,715 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/b0/8ce78b8acf8de310c0248331e2cb193a5a82343ebfb31302847b333aa8c5/viennarna-2.7.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,715 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/99/78/ca0cb5d1d1c7cdb78245aba35fcc8bf596448d41d25fb8711d344255ec8f/viennarna-2.7.1-cp312-cp312-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,716 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7a/d0/2d745b2aef840e71d904024a1e8afe429da9f88bb13efc4b218197e409e0/viennarna-2.7.1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,717 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/24/72/2b22db8e280d4b8a1894ab3470306e6d30228b003d0913aaa2fb47066947/viennarna-2.7.1-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,717 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/de/9a/642029293c556108dd52d1539c731e4e496d4c5b36fe446b7b77f1adac9b/viennarna-2.7.1-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,718 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e7/9a/807e9a672b4036dd8a5ea13a690ee635c9b6f4bf5a97a8d1dbc88631b423/viennarna-2.7.1-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,719 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7d/4a/50968108ed4c091c1c4dda49d8c6788fa4f52f2cb590b906281be211fdd3/viennarna-2.7.1-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,719 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/3e/16/3c14111c9c7390d82c4f01e73e12b7c77d0496ab639df4f3be1966b66514/viennarna-2.7.1-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,720 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e4/25/47be190d844c23289270329ceb2ef7d8393cb699315fcc0d9b106c8f96af/viennarna-2.7.1-cp313-cp313-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,720 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4d/27/31a786e36ed939ed55a81de0723a3eb28bbc73828dc618921371639bdc75/viennarna-2.7.1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,721 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b6/87/5409461654c7dfd6e54ccc3ffce5e5746f06b2b5653f5c8a4a2058b2fa7d/viennarna-2.7.1-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,721 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/4a/95/01f016a7e67ac14e4867c271ae47e826129f9e539ddd73a0da91d9e1e488/viennarna-2.7.1-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,722 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/73/ee/b5b1de3c5866a5ca217f65166719e2081932067a1142cff8adf5a0394919/viennarna-2.7.1-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,722 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/5a/4dee23085bcd13302ba8d0624670871e3e19f6293b84b13829481cc3b0db/viennarna-2.7.1-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,723 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/89/dd/aa7d462920dbdddca1d23482e31db9390350855d9444f184bb81f88df4b7/viennarna-2.7.1-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,724 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/81/8e/1570406d1cdb72aea41bdeca05093886a387909d0b925ce09190cb4daabe/viennarna-2.7.1-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,724 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/dc/cf/2dbc5f800b58c623549928ffb540d25ac76715b997467b4b4ea93e8c59d1/viennarna-2.7.1-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,725 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9e/b1/9622a292f0869acae0876f025732c788f739cc92211465df58ffd9499f47/viennarna-2.7.1-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,725 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b2/df/ea2987e6341e96c2f87be68a9e1fd7f3b433e5584b732d841c0abf6dd374/viennarna-2.7.1-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,726 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0a/98/a9f9040210aa946265801caaaf329af94c1c80695debd8c56eebb440a654/viennarna-2.7.1-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,727 Found link https://files.pythonhosted.org/packages/cd/a2/3dedf55c11205c663f00ac408eddc48f2d5aef6cb0a3fdb0d81294a7c903/viennarna-2.7.1.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.7.1 2025-12-30T10:21:13,728 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7b/58/dba6ecb3af4b2bf014da26c2daab1512d830f1ab7a1a20a479dc95b487ac/viennarna-2.7.2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,728 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/ed/57/71777220503e901c953ea5d10bb8384ba10459ae6fa4588a63b00f228797/viennarna-2.7.2-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,729 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/68/28/f38a73fcf5bad9d569c93a062b94e0787403fb556a718459ef16b3761813/viennarna-2.7.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,730 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d9/9f/d74294886183547a752bd9485c188ec8c27797a6a4972c2525f93f1c8f92/viennarna-2.7.2-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,730 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/6b/39/11623379f6377b2c7e00e40cb42d98963dadd0dca2606f9e9c244e659433/viennarna-2.7.2-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,731 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/13/56/7cb8d9ab7ceb88f0890489b1018af783b23a754f3b20e863fa13f1ec5823/viennarna-2.7.2-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,731 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/7f/6e/f222387d88e0dc0fc0c53ec24ea69a42dd1817fc190247cb76d0472c8e5d/viennarna-2.7.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,732 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a5/21/ed66fcb3e1aab15db124c396637a17021f983908a6489a0ae420fa9bfeba/viennarna-2.7.2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,732 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/d1/f9/e23b1e38c27b0df2b0327a57e2064caf55ee3880262998348ae6431e65e4/viennarna-2.7.2-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,733 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fe/38/af0813badfc843babe9e6c6cbecb64b6e5d7a5eb786177e878f7b73768a5/viennarna-2.7.2-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,734 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1b/81/714e66e180a07717c1259bd79e9ca5f724d99fc62575f1b86f153aed7332/viennarna-2.7.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,734 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/29/08/1109956b7c50dfa2df3fbd020655244918b407a6bed80a5de5f2472b52cc/viennarna-2.7.2-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,735 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/50/bc/853723554c5f9f73a90bbfad86234ed5838462fd0a170fff711c3189c1ce/viennarna-2.7.2-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,735 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/93/a4/774155a4bf659473206c675eed666031500e05a40ebf52a7590243085ed3/viennarna-2.7.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,736 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/e3/9e/15d00b8a67e0176ff35fc1bdadac8d051062fd32d431be711309ad807af1/viennarna-2.7.2-cp312-cp312-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,737 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/8c/11/4f381962409a7f63730d4877c09de75e31dd37054250e89870b71e685402/viennarna-2.7.2-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,737 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/79/93/4128120d867a7bda53e37fffac58035209e14ee36568a0d44565b42db7b8/viennarna-2.7.2-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,738 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/0d/ba/c2b939614c4e48b7e387db7549eaf2b03d682e030eee1b93679854bc0bd1/viennarna-2.7.2-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,738 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a2/73/90f8f323337a88c27f7fd28d64e5b93f520a1704e9ff0489774aedc38059/viennarna-2.7.2-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,739 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/fe/9c/fa4391936abf0624cafa4ad72c38d5d7462cc8d6bd6968709758f31dca08/viennarna-2.7.2-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,739 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/1c/ef/48c46b000caf747fc03866c00fbc14fff89e833b614f2b261487b7260440/viennarna-2.7.2-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,740 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/68/02/342d3dadb343dd79960176731d4beedef1b6702d603f976c92a70a784e28/viennarna-2.7.2-cp313-cp313-macosx_10_14_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,740 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/9c/b3/f2840df26f7da356babd7b99fbe954c6fed9cd0cb1f5dd41e76d54e4be0b/viennarna-2.7.2-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,741 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/b5/88/5e2be1e348212c9a65f5385a3084fbdba58e1f65e44f4b0c053fc65bd44f/viennarna-2.7.2-cp313-cp313-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,742 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/f3/33/806495477b75777679d1caad34bc6819cc668c383e1f7b4090026b4fa9bc/viennarna-2.7.2-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,742 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/62/5a/951c0a3a40c690e127c360bb6752c13e87bfbe66f98aab0fa822ab237ed5/viennarna-2.7.2-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,743 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/db/28/ba6c3d42b34a41ff18132207ac323f225f800ffb8174c665411d1e025a03/viennarna-2.7.2-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,743 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/a0/23/e41a7dfca0ce615b4e63fd7c3dccac89c34f3039fbfe6bd6e7b89b4a971e/viennarna-2.7.2-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,744 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/83/7a/e3f474cd8ca60e3f90a78bd81e08cd5d0e3e75df94395ff8463727aacac4/viennarna-2.7.2-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/43/36/e04bcb7ad8d986073a6b75610d75940c71111af3b3f026365a72cae57ff1/viennarna-2.7.2-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/78/b7/b45c72f99a5f5acece93c87dff4ff36ca9c1f55a596443180ab2556d202f/viennarna-2.7.2-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,745 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/bb/2c/4426855bee29218525d5789d923574709cb73bfac6e2d70678e13e22cd0b/viennarna-2.7.2-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,746 Skipping link: No binaries permitted for viennarna: https://files.pythonhosted.org/packages/76/b7/57c0991edc7e7cd3fc4b514496cd87a6338229028c12bb062cd5b58d70f7/viennarna-2.7.2-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8) 2025-12-30T10:21:13,747 Found link https://files.pythonhosted.org/packages/d0/7a/2165d7d54234efc63a929a33d8a746cc23c3834747d195bd4d1b56cd1124/viennarna-2.7.2.tar.gz (from https://pypi.org/simple/viennarna/) (requires-python:>=3.8), version: 2.7.2 2025-12-30T10:21:13,748 Fetching project page and analyzing links: https://www.piwheels.org/simple/viennarna/ 2025-12-30T10:21:13,748 Getting page https://www.piwheels.org/simple/viennarna/ 2025-12-30T10:21:13,750 Found index url https://www.piwheels.org/simple 2025-12-30T10:21:13,911 Fetched page https://www.piwheels.org/simple/viennarna/ as text/html 2025-12-30T10:21:13,912 Skipping link: not a file: https://www.piwheels.org/simple/viennarna/ 2025-12-30T10:21:13,913 Skipping link: not a file: https://pypi.org/simple/viennarna/ 2025-12-30T10:21:13,932 Given no hashes to check 1 links for project 'viennarna': discarding no candidates 2025-12-30T10:21:13,950 Collecting viennarna==2.7.2 2025-12-30T10:21:13,953 Created temporary directory: /tmp/pip-unpack-jaxr5am5 2025-12-30T10:21:14,087 Downloading viennarna-2.7.2.tar.gz (6.3 MB) 2025-12-30T10:21:19,932 Added viennarna==2.7.2 from https://files.pythonhosted.org/packages/d0/7a/2165d7d54234efc63a929a33d8a746cc23c3834747d195bd4d1b56cd1124/viennarna-2.7.2.tar.gz to build tracker '/tmp/pip-build-tracker-6sdotecf' 2025-12-30T10:21:19,937 Created temporary directory: /tmp/pip-build-env-8gr23xpn 2025-12-30T10:21:19,942 Installing build dependencies: started 2025-12-30T10:21:19,943 Running command pip subprocess to install build dependencies 2025-12-30T10:21:21,106 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2025-12-30T10:21:21,674 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2025-12-30T10:21:21,696 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2025-12-30T10:21:23,509 Collecting setuptools>=61.0 2025-12-30T10:21:23,604 Using cached https://www.piwheels.org/simple/setuptools/setuptools-80.9.0-py3-none-any.whl (1.2 MB) 2025-12-30T10:21:26,628 Installing collected packages: setuptools 2025-12-30T10:21:30,260 Successfully installed setuptools-80.9.0 2025-12-30T10:21:30,524 Installing build dependencies: finished with status 'done' 2025-12-30T10:21:30,530 Getting requirements to build wheel: started 2025-12-30T10:21:30,531 Running command Getting requirements to build wheel 2025-12-30T10:21:31,172 /tmp/pip-build-env-8gr23xpn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-30T10:21:31,172 !! 2025-12-30T10:21:31,173 ******************************************************************************** 2025-12-30T10:21:31,174 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-30T10:21:31,175 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-30T10:21:31,175 or your builds will no longer be supported. 2025-12-30T10:21:31,176 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-30T10:21:31,176 ******************************************************************************** 2025-12-30T10:21:31,177 !! 2025-12-30T10:21:31,178 corresp(dist, value, root_dir) 2025-12-30T10:21:31,252 running egg_info 2025-12-30T10:21:31,259 writing ViennaRNA.egg-info/PKG-INFO 2025-12-30T10:21:31,262 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2025-12-30T10:21:31,264 writing top-level names to ViennaRNA.egg-info/top_level.txt 2025-12-30T10:21:31,334 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-30T10:21:31,653 reading manifest template 'MANIFEST.in' 2025-12-30T10:21:33,349 adding license file 'COPYING' 2025-12-30T10:21:33,350 adding license file 'AUTHORS' 2025-12-30T10:21:33,442 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-30T10:21:33,543 Getting requirements to build wheel: finished with status 'done' 2025-12-30T10:21:33,547 Created temporary directory: /tmp/pip-modern-metadata-5lyonf7x 2025-12-30T10:21:33,550 Preparing metadata (pyproject.toml): started 2025-12-30T10:21:33,551 Running command Preparing metadata (pyproject.toml) 2025-12-30T10:21:34,159 /tmp/pip-build-env-8gr23xpn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-30T10:21:34,159 !! 2025-12-30T10:21:34,160 ******************************************************************************** 2025-12-30T10:21:34,161 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-30T10:21:34,162 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-30T10:21:34,162 or your builds will no longer be supported. 2025-12-30T10:21:34,163 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-30T10:21:34,164 ******************************************************************************** 2025-12-30T10:21:34,165 !! 2025-12-30T10:21:34,166 corresp(dist, value, root_dir) 2025-12-30T10:21:34,243 running dist_info 2025-12-30T10:21:34,256 creating /tmp/pip-modern-metadata-5lyonf7x/ViennaRNA.egg-info 2025-12-30T10:21:34,257 writing /tmp/pip-modern-metadata-5lyonf7x/ViennaRNA.egg-info/PKG-INFO 2025-12-30T10:21:34,261 writing dependency_links to /tmp/pip-modern-metadata-5lyonf7x/ViennaRNA.egg-info/dependency_links.txt 2025-12-30T10:21:34,263 writing top-level names to /tmp/pip-modern-metadata-5lyonf7x/ViennaRNA.egg-info/top_level.txt 2025-12-30T10:21:34,265 writing manifest file '/tmp/pip-modern-metadata-5lyonf7x/ViennaRNA.egg-info/SOURCES.txt' 2025-12-30T10:21:34,290 reading manifest file '/tmp/pip-modern-metadata-5lyonf7x/ViennaRNA.egg-info/SOURCES.txt' 2025-12-30T10:21:34,293 reading manifest template 'MANIFEST.in' 2025-12-30T10:21:36,069 adding license file 'COPYING' 2025-12-30T10:21:36,070 adding license file 'AUTHORS' 2025-12-30T10:21:36,134 writing manifest file '/tmp/pip-modern-metadata-5lyonf7x/ViennaRNA.egg-info/SOURCES.txt' 2025-12-30T10:21:36,137 creating '/tmp/pip-modern-metadata-5lyonf7x/viennarna-2.7.2.dist-info' 2025-12-30T10:21:36,281 Preparing metadata (pyproject.toml): finished with status 'done' 2025-12-30T10:21:36,288 Source in /tmp/pip-wheel-xxbtxyv9/viennarna_4ba51d8ab6104d61976b7f6e7e3a171f has version 2.7.2, which satisfies requirement viennarna==2.7.2 from https://files.pythonhosted.org/packages/d0/7a/2165d7d54234efc63a929a33d8a746cc23c3834747d195bd4d1b56cd1124/viennarna-2.7.2.tar.gz 2025-12-30T10:21:36,289 Removed viennarna==2.7.2 from https://files.pythonhosted.org/packages/d0/7a/2165d7d54234efc63a929a33d8a746cc23c3834747d195bd4d1b56cd1124/viennarna-2.7.2.tar.gz from build tracker '/tmp/pip-build-tracker-6sdotecf' 2025-12-30T10:21:36,296 Created temporary directory: /tmp/pip-unpack-lobac3rn 2025-12-30T10:21:36,297 Building wheels for collected packages: viennarna 2025-12-30T10:21:36,301 Created temporary directory: /tmp/pip-wheel-zysosfjm 2025-12-30T10:21:36,302 Destination directory: /tmp/pip-wheel-zysosfjm 2025-12-30T10:21:36,304 Building wheel for viennarna (pyproject.toml): started 2025-12-30T10:21:36,305 Running command Building wheel for viennarna (pyproject.toml) 2025-12-30T10:21:36,903 /tmp/pip-build-env-8gr23xpn/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2025-12-30T10:21:36,904 !! 2025-12-30T10:21:36,905 ******************************************************************************** 2025-12-30T10:21:36,906 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2025-12-30T10:21:36,907 By 2026-Feb-18, you need to update your project and remove deprecated calls 2025-12-30T10:21:36,907 or your builds will no longer be supported. 2025-12-30T10:21:36,909 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2025-12-30T10:21:36,909 ******************************************************************************** 2025-12-30T10:21:36,910 !! 2025-12-30T10:21:36,911 corresp(dist, value, root_dir) 2025-12-30T10:21:36,975 running bdist_wheel 2025-12-30T10:21:36,993 running build 2025-12-30T10:21:36,993 running build_py 2025-12-30T10:21:36,999 creating build/lib.linux-armv7l-cpython-311/RNA 2025-12-30T10:21:37,001 copying interfaces/Python/RNA/__init__.py -> build/lib.linux-armv7l-cpython-311/RNA 2025-12-30T10:21:37,004 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-311/RNA 2025-12-30T10:21:37,016 creating build/lib.linux-armv7l-cpython-311/ViennaRNA 2025-12-30T10:21:37,017 copying interfaces/Python/ViennaRNA/__init__.py -> build/lib.linux-armv7l-cpython-311/ViennaRNA 2025-12-30T10:21:37,020 copying interfaces/Python/RNA/RNA.py -> build/lib.linux-armv7l-cpython-311/RNA 2025-12-30T10:21:37,034 running egg_info 2025-12-30T10:21:37,046 writing ViennaRNA.egg-info/PKG-INFO 2025-12-30T10:21:37,049 writing dependency_links to ViennaRNA.egg-info/dependency_links.txt 2025-12-30T10:21:37,051 writing top-level names to ViennaRNA.egg-info/top_level.txt 2025-12-30T10:21:37,064 reading manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-30T10:21:37,169 reading manifest template 'MANIFEST.in' 2025-12-30T10:21:38,784 adding license file 'COPYING' 2025-12-30T10:21:38,784 adding license file 'AUTHORS' 2025-12-30T10:21:38,876 writing manifest file 'ViennaRNA.egg-info/SOURCES.txt' 2025-12-30T10:21:38,949 running build_ext 2025-12-30T10:21:38,956 building 'RNA._RNA' extension 2025-12-30T10:21:38,967 creating build/temp.linux-armv7l-cpython-311/interfaces/Python 2025-12-30T10:21:38,969 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA 2025-12-30T10:21:38,971 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack 2025-12-30T10:21:38,972 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics 2025-12-30T10:21:38,973 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints 2025-12-30T10:21:38,975 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/data 2025-12-30T10:21:38,976 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures 2025-12-30T10:21:38,978 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval 2025-12-30T10:21:38,980 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar 2025-12-30T10:21:38,981 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse 2025-12-30T10:21:38,982 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io 2025-12-30T10:21:38,983 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape 2025-12-30T10:21:38,985 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math 2025-12-30T10:21:38,986 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe 2025-12-30T10:21:38,988 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params 2025-12-30T10:21:38,990 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc 2025-12-30T10:21:38,992 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler 2025-12-30T10:21:38,994 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview 2025-12-30T10:21:38,995 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probabilities 2025-12-30T10:21:38,996 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing 2025-12-30T10:21:38,997 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sampling 2025-12-30T10:21:38,998 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search 2025-12-30T10:21:38,999 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences 2025-12-30T10:21:39,000 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures 2025-12-30T10:21:39,002 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt 2025-12-30T10:21:39,003 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils 2025-12-30T10:21:39,005 creating build/temp.linux-armv7l-cpython-311/src/ViennaRNA/zscore 2025-12-30T10:21:39,006 creating build/temp.linux-armv7l-cpython-311/src/cephes 2025-12-30T10:21:39,007 creating build/temp.linux-armv7l-cpython-311/src/json 2025-12-30T10:21:39,008 creating build/temp.linux-armv7l-cpython-311/src/libsvm-3.35 2025-12-30T10:21:39,009 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c interfaces/Python/RNA_wrap.cpp -o build/temp.linux-armv7l-cpython-311/interfaces/Python/RNA_wrap.o -fopenmp 2025-12-30T10:21:43,108 interfaces/Python/RNA_wrap.cpp: In function ‘void SWIG_TypeClientData(swig_type_info*, void*)’: 2025-12-30T10:21:43,109 interfaces/Python/RNA_wrap.cpp:692:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:21:43,109 692 | for (cast = head; (cast - head) <= head->value; cast++) { 2025-12-30T10:21:43,110 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2025-12-30T10:21:54,982 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned char var_array_Sl_unsigned_SS_char_Sg__get(const var_array*, int)’: 2025-12-30T10:21:54,983 interfaces/Python/RNA_wrap.cpp:7998:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:54,984 7998 | if (((i < 0) && (-i >= max_i)) || 2025-12-30T10:21:54,984 | ~~~^~~~~~~~ 2025-12-30T10:21:54,985 interfaces/Python/RNA_wrap.cpp:7999:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:54,985 7999 | ((i >= 0) && (i >= max_i))) 2025-12-30T10:21:54,986 | ~~^~~~~~~~ 2025-12-30T10:21:55,014 interfaces/Python/RNA_wrap.cpp: In function ‘const char var_array_Sl_char_Sg__get(const var_array*, int)’: 2025-12-30T10:21:55,014 interfaces/Python/RNA_wrap.cpp:8211:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,015 8211 | if (((i < 0) && (-i >= max_i)) || 2025-12-30T10:21:55,015 | ~~~^~~~~~~~ 2025-12-30T10:21:55,016 interfaces/Python/RNA_wrap.cpp:8212:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,016 8212 | ((i >= 0) && (i >= max_i))) 2025-12-30T10:21:55,017 | ~~^~~~~~~~ 2025-12-30T10:21:55,039 interfaces/Python/RNA_wrap.cpp: In function ‘const short int var_array_Sl_short_Sg__get(const var_array*, int)’: 2025-12-30T10:21:55,039 interfaces/Python/RNA_wrap.cpp:8401:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,040 8401 | if (((i < 0) && (-i >= max_i)) || 2025-12-30T10:21:55,041 | ~~~^~~~~~~~ 2025-12-30T10:21:55,041 interfaces/Python/RNA_wrap.cpp:8402:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,042 8402 | ((i >= 0) && (i >= max_i))) 2025-12-30T10:21:55,043 | ~~^~~~~~~~ 2025-12-30T10:21:55,056 interfaces/Python/RNA_wrap.cpp: In function ‘const unsigned int var_array_Sl_unsigned_SS_int_Sg__get(const var_array*, int)’: 2025-12-30T10:21:55,057 interfaces/Python/RNA_wrap.cpp:8614:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,058 8614 | if (((i < 0) && (-i >= max_i)) || 2025-12-30T10:21:55,059 | ~~~^~~~~~~~ 2025-12-30T10:21:55,059 interfaces/Python/RNA_wrap.cpp:8615:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,060 8615 | ((i >= 0) && (i >= max_i))) 2025-12-30T10:21:55,061 | ~~^~~~~~~~ 2025-12-30T10:21:55,074 interfaces/Python/RNA_wrap.cpp: In function ‘const int var_array_Sl_int_Sg__get(const var_array*, int)’: 2025-12-30T10:21:55,074 interfaces/Python/RNA_wrap.cpp:8804:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,075 8804 | if (((i < 0) && (-i >= max_i)) || 2025-12-30T10:21:55,076 | ~~~^~~~~~~~ 2025-12-30T10:21:55,077 interfaces/Python/RNA_wrap.cpp:8805:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,077 8805 | ((i >= 0) && (i >= max_i))) 2025-12-30T10:21:55,078 | ~~^~~~~~~~ 2025-12-30T10:21:55,093 interfaces/Python/RNA_wrap.cpp: In function ‘const FLT_OR_DBL var_array_Sl_FLT_OR_DBL_Sg__get(const var_array*, int)’: 2025-12-30T10:21:55,094 interfaces/Python/RNA_wrap.cpp:8994:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,094 8994 | if (((i < 0) && (-i >= max_i)) || 2025-12-30T10:21:55,095 | ~~~^~~~~~~~ 2025-12-30T10:21:55,096 interfaces/Python/RNA_wrap.cpp:8995:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,096 8995 | ((i >= 0) && (i >= max_i))) 2025-12-30T10:21:55,097 | ~~^~~~~~~~ 2025-12-30T10:21:55,114 interfaces/Python/RNA_wrap.cpp: In function ‘const vrna_move_t var_array_Sl_vrna_move_t_Sg__get(const var_array*, int)’: 2025-12-30T10:21:55,114 interfaces/Python/RNA_wrap.cpp:9184:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,115 9184 | if (((i < 0) && (-i >= max_i)) || 2025-12-30T10:21:55,115 | ~~~^~~~~~~~ 2025-12-30T10:21:55,116 interfaces/Python/RNA_wrap.cpp:9185:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,116 9185 | ((i >= 0) && (i >= max_i))) 2025-12-30T10:21:55,117 | ~~^~~~~~~~ 2025-12-30T10:21:55,193 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_str_to_dbl_array(const std::string&, const std::string&, unsigned int)’: 2025-12-30T10:21:55,194 interfaces/Python/RNA_wrap.cpp:9593:21: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-12-30T10:21:55,195 9593 | printf("v[%ld] = %f", i, c_vs[i]); 2025-12-30T10:21:55,195 | ~~^ ~ 2025-12-30T10:21:55,196 | | | 2025-12-30T10:21:55,197 | long int size_t {aka unsigned int} 2025-12-30T10:21:55,198 | %d 2025-12-30T10:21:55,211 interfaces/Python/RNA_wrap.cpp: In function ‘var_array* my_ptable(std::string, unsigned int)’: 2025-12-30T10:21:55,211 interfaces/Python/RNA_wrap.cpp:9733:21: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:21:55,212 9733 | int i; 2025-12-30T10:21:55,213 | ^ 2025-12-30T10:21:55,214 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_pt_pk_remove(std::vector >, unsigned int)’: 2025-12-30T10:21:55,214 interfaces/Python/RNA_wrap.cpp:9787:15: warning: comparison of integer expressions of different signedness: ‘__gnu_cxx::__alloc_traits, int>::value_type’ {aka ‘int’} and ‘std::vector >::size_type’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:21:55,215 9787 | if (pt[0] != pt.size() - 1) 2025-12-30T10:21:55,225 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > my_loopidx_from_ptable(std::vector >)’: 2025-12-30T10:21:55,226 interfaces/Python/RNA_wrap.cpp:9941:25: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:21:55,226 9941 | int i, *idx; 2025-12-30T10:21:55,227 | ^ 2025-12-30T10:21:55,298 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* probing_data_linear(std::vector >, std::vector >, PyObject*, PyObject*, PyObject*, unsigned int)’: 2025-12-30T10:21:55,299 interfaces/Python/RNA_wrap.cpp:11220:23: warning: unused variable ‘func_is_tuple’ [-Wunused-variable] 2025-12-30T10:21:55,300 11220 | unsigned char func_is_tuple, func_is_list; 2025-12-30T10:21:55,300 | ^~~~~~~~~~~~~ 2025-12-30T10:21:55,301 interfaces/Python/RNA_wrap.cpp:11220:38: warning: unused variable ‘func_is_list’ [-Wunused-variable] 2025-12-30T10:21:55,301 11220 | unsigned char func_is_tuple, func_is_list; 2025-12-30T10:21:55,302 | ^~~~~~~~~~~~ 2025-12-30T10:21:55,302 interfaces/Python/RNA_wrap.cpp:11221:23: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-30T10:21:55,303 11221 | unsigned int s; 2025-12-30T10:21:55,304 | ^ 2025-12-30T10:21:55,306 interfaces/Python/RNA_wrap.cpp: In function ‘double* py_wrap_probing_strategy_callback(vrna_fold_compound_t*, const double*, size_t, unsigned int, void*)’: 2025-12-30T10:21:55,307 interfaces/Python/RNA_wrap.cpp:11262:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,307 11262 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,308 | ^~~~~~~ 2025-12-30T10:21:55,320 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_4(std::vector >, std::allocator > > >, std::vector >, std::vector >)’: 2025-12-30T10:21:55,321 interfaces/Python/RNA_wrap.cpp:11555:31: warning: unused variable ‘n_seq’ [-Wunused-variable] 2025-12-30T10:21:55,321 11555 | unsigned int n_seq = reactivities.size(); 2025-12-30T10:21:55,322 | ^~~~~ 2025-12-30T10:21:55,328 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_5(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >)’: 2025-12-30T10:21:55,329 interfaces/Python/RNA_wrap.cpp:11592:31: warning: unused variable ‘n_seq’ [-Wunused-variable] 2025-12-30T10:21:55,329 11592 | unsigned int n_seq = reactivities.size(); 2025-12-30T10:21:55,330 | ^~~~~ 2025-12-30T10:21:55,341 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_probing_data_s* probing_data_zarringhalam_comparative(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >, unsigned int)’: 2025-12-30T10:21:55,342 interfaces/Python/RNA_wrap.cpp:11791:31: warning: unused variable ‘n_seq’ [-Wunused-variable] 2025-12-30T10:21:55,343 11791 | unsigned int n_seq = reactivities.size(); 2025-12-30T10:21:55,344 | ^~~~~ 2025-12-30T10:21:55,363 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, float*)’: 2025-12-30T10:21:55,364 interfaces/Python/RNA_wrap.cpp:12183:11: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-30T10:21:55,365 12183 | char *s, **tok, **ptr, *struc, *sequence; 2025-12-30T10:21:55,365 | ^ 2025-12-30T10:21:55,367 interfaces/Python/RNA_wrap.cpp: In function ‘char* my_cofold(char*, char*, float*)’: 2025-12-30T10:21:55,367 interfaces/Python/RNA_wrap.cpp:12234:11: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-30T10:21:55,368 12234 | char *s, **tok, **ptr, *struc, *sequence; 2025-12-30T10:21:55,369 | ^ 2025-12-30T10:21:55,378 interfaces/Python/RNA_wrap.cpp: In function ‘double my_pf_add(double, double, double)’: 2025-12-30T10:21:55,379 interfaces/Python/RNA_wrap.cpp:12487:12: warning: unused variable ‘result’ [-Wunused-variable] 2025-12-30T10:21:55,379 12487 | double result = 0; 2025-12-30T10:21:55,380 | ^~~~~~ 2025-12-30T10:21:55,447 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_command_s* my_file_commands_read(std::string, unsigned int)’: 2025-12-30T10:21:55,447 interfaces/Python/RNA_wrap.cpp:13222:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:21:55,448 13222 | int i; 2025-12-30T10:21:55,449 | ^ 2025-12-30T10:21:55,574 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_f_callback(int, int, int, int, unsigned char, void*)’: 2025-12-30T10:21:55,574 interfaces/Python/RNA_wrap.cpp:14728:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,575 14728 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,576 | ^~~~~~~ 2025-12-30T10:21:55,580 interfaces/Python/RNA_wrap.cpp: In function ‘vrna_basepair_t* py_wrap_sc_bt_callback(int, int, int, int, unsigned char, void*)’: 2025-12-30T10:21:55,581 interfaces/Python/RNA_wrap.cpp:14800:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,582 14800 | PyObject *func, *arglist, *result, *bp, *err; 2025-12-30T10:21:55,582 | ^~~~~~~ 2025-12-30T10:21:55,585 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_exp_f_callback(int, int, int, int, unsigned char, void*)’: 2025-12-30T10:21:55,586 interfaces/Python/RNA_wrap.cpp:14919:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,586 14919 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,587 | ^~~~~~~ 2025-12-30T10:21:55,598 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_ud_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2025-12-30T10:21:55,599 interfaces/Python/RNA_wrap.cpp:15359:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,600 15359 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2025-12-30T10:21:55,601 | ^~~~~~~ 2025-12-30T10:21:55,602 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_exp_energy(vrna_fold_compound_t*, int, int, unsigned int, void*)’: 2025-12-30T10:21:55,603 interfaces/Python/RNA_wrap.cpp:15419:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,603 15419 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype; 2025-12-30T10:21:55,604 | ^~~~~~~ 2025-12-30T10:21:55,605 interfaces/Python/RNA_wrap.cpp: In function ‘void py_wrap_ud_prob_add(vrna_fold_compound_t*, int, int, unsigned int, FLT_OR_DBL, void*)’: 2025-12-30T10:21:55,606 interfaces/Python/RNA_wrap.cpp:15479:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,607 15479 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_prob; 2025-12-30T10:21:55,607 | ^~~~~~~ 2025-12-30T10:21:55,609 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_ud_prob_get(vrna_fold_compound_t*, int, int, unsigned int, int, void*)’: 2025-12-30T10:21:55,610 interfaces/Python/RNA_wrap.cpp:15538:29: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,611 15538 | PyObject *func, *arglist, *result, *err, *py_vc, *py_i, *py_j, *py_looptype, *py_motif; 2025-12-30T10:21:55,611 | ^~~~~~~ 2025-12-30T10:21:55,613 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_subopt_cb(const char*, float, void*)’: 2025-12-30T10:21:55,614 interfaces/Python/RNA_wrap.cpp:15640:37: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,615 15640 | PyObject *func, *arglist, *result, *err, *py_structure, *py_energy; 2025-12-30T10:21:55,616 | ^~~~~~~ 2025-12-30T10:21:55,617 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_bs_cb(const char*, void*)’: 2025-12-30T10:21:55,618 interfaces/Python/RNA_wrap.cpp:15726:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,618 15726 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,619 | ^~~~~~~ 2025-12-30T10:21:55,620 interfaces/Python/RNA_wrap.cpp:15731:28: warning: unused variable ‘py_energy’ [-Wunused-variable] 2025-12-30T10:21:55,620 15731 | PyObject *py_structure, *py_energy; 2025-12-30T10:21:55,621 | ^~~~~~~~~ 2025-12-30T10:21:55,622 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_cb(unsigned int, unsigned int, const char*, float, void*)’: 2025-12-30T10:21:55,623 interfaces/Python/RNA_wrap.cpp:15825:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,623 15825 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,624 | ^~~~~~~ 2025-12-30T10:21:55,625 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_mfe_window_zscore_cb(unsigned int, unsigned int, const char*, float, float, void*)’: 2025-12-30T10:21:55,626 interfaces/Python/RNA_wrap.cpp:15879:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,627 15879 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,627 | ^~~~~~~ 2025-12-30T10:21:55,633 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_pf_window_cb(FLT_OR_DBL*, int, int, int, unsigned int, void*)’: 2025-12-30T10:21:55,634 interfaces/Python/RNA_wrap.cpp:16031:20: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,635 16031 | PyObject *func, *arglist, *result, *pr_list, *err; 2025-12-30T10:21:55,635 | ^~~~~~~ 2025-12-30T10:21:55,639 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_heat_capacity_cb(float, float, void*)’: 2025-12-30T10:21:55,640 interfaces/Python/RNA_wrap.cpp:16190:43: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,640 16190 | PyObject *func, *arglist, *result, *err, *py_temp, *py_hc; 2025-12-30T10:21:55,641 | ^~~~~~~ 2025-12-30T10:21:55,643 interfaces/Python/RNA_wrap.cpp: In function ‘void python_wrap_move_update_cb(vrna_fold_compound_t*, vrna_move_t, unsigned int, void*)’: 2025-12-30T10:21:55,644 interfaces/Python/RNA_wrap.cpp:16284:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,645 16284 | PyObject *func, *arglist, *result, *err, *py_fc, *py_neighbor, *py_state; 2025-12-30T10:21:55,646 | ^~~~~~~ 2025-12-30T10:21:55,649 interfaces/Python/RNA_wrap.cpp: In function ‘int sc_multi_cb_add_pycallback(vrna_fold_compound_t*, PyObject*, PyObject*, PyObject*, PyObject*, PyObject*, unsigned int)’: 2025-12-30T10:21:55,650 interfaces/Python/RNA_wrap.cpp:16437:23: warning: unused variable ‘func_is_tuple’ [-Wunused-variable] 2025-12-30T10:21:55,650 16437 | unsigned char func_is_tuple, func_is_list; 2025-12-30T10:21:55,651 | ^~~~~~~~~~~~~ 2025-12-30T10:21:55,652 interfaces/Python/RNA_wrap.cpp:16437:38: warning: unused variable ‘func_is_list’ [-Wunused-variable] 2025-12-30T10:21:55,653 16437 | unsigned char func_is_tuple, func_is_list; 2025-12-30T10:21:55,653 | ^~~~~~~~~~~~ 2025-12-30T10:21:55,654 interfaces/Python/RNA_wrap.cpp:16438:23: warning: unused variable ‘s’ [-Wunused-variable] 2025-12-30T10:21:55,655 16438 | unsigned int s; 2025-12-30T10:21:55,656 | ^ 2025-12-30T10:21:55,657 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_direct_f_callback(vrna_fold_compound_t*, int, int, int, int, void*)’: 2025-12-30T10:21:55,657 interfaces/Python/RNA_wrap.cpp:16502:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,658 16502 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,658 | ^~~~~~~ 2025-12-30T10:21:55,659 interfaces/Python/RNA_wrap.cpp: In function ‘FLT_OR_DBL py_wrap_sc_direct_exp_f_callback(vrna_fold_compound_t*, int, int, int, int, void*)’: 2025-12-30T10:21:55,660 interfaces/Python/RNA_wrap.cpp:16577:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,660 16577 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,661 | ^~~~~~~ 2025-12-30T10:21:55,661 interfaces/Python/RNA_wrap.cpp: In function ‘int py_wrap_sc_direct_data_prepare_callback(vrna_fold_compound_t*, void*, unsigned int, void*)’: 2025-12-30T10:21:55,662 interfaces/Python/RNA_wrap.cpp:16649:31: warning: unused variable ‘arglist’ [-Wunused-variable] 2025-12-30T10:21:55,663 16649 | PyObject *func, *arglist, *result, *err; 2025-12-30T10:21:55,663 | ^~~~~~~ 2025-12-30T10:21:55,694 interfaces/Python/RNA_wrap.cpp: In function ‘double vrna_fold_compound_t_exp_E_ext_stem(vrna_fold_compound_t*, int, int)’: 2025-12-30T10:21:55,694 interfaces/Python/RNA_wrap.cpp:17043:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:21:55,695 17043 | if (j < self->length) 2025-12-30T10:21:55,696 | ~~^~~~~~~~~~~~~~ 2025-12-30T10:21:55,706 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector >, std::allocator > > > vrna_fold_compound_t_bpp(vrna_fold_compound_t*, bool)’: 2025-12-30T10:21:55,707 interfaces/Python/RNA_wrap.cpp:17186:11: warning: unused variable ‘turn’ [-Wunused-variable] 2025-12-30T10:21:55,708 17186 | int turn, i, j, *idx, n; 2025-12-30T10:21:55,708 | ^~~~ 2025-12-30T10:21:55,737 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2025-12-30T10:21:55,737 interfaces/Python/RNA_wrap.cpp:17510:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:21:55,738 17510 | int i; 2025-12-30T10:21:55,739 | ^ 2025-12-30T10:21:55,743 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_gradient__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int)’: 2025-12-30T10:21:55,744 interfaces/Python/RNA_wrap.cpp:17554:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:21:55,745 17554 | int i; 2025-12-30T10:21:55,745 | ^ 2025-12-30T10:21:55,749 interfaces/Python/RNA_wrap.cpp: In function ‘std::vector > vrna_fold_compound_t_path_random__SWIG_1(vrna_fold_compound_t*, var_array&, unsigned int, unsigned int)’: 2025-12-30T10:21:55,750 interfaces/Python/RNA_wrap.cpp:17598:9: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:21:55,751 17598 | int i; 2025-12-30T10:21:55,751 | ^ 2025-12-30T10:21:58,524 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_temperature_set(PyObject*)’: 2025-12-30T10:21:58,525 interfaces/Python/RNA_wrap.cpp:61840:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,525 61840 | fail: 2025-12-30T10:21:58,526 | ^~~~ 2025-12-30T10:21:58,527 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_dangles_set(PyObject*)’: 2025-12-30T10:21:58,527 interfaces/Python/RNA_wrap.cpp:61860:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,528 61860 | fail: 2025-12-30T10:21:58,529 | ^~~~ 2025-12-30T10:21:58,529 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_betaScale_set(PyObject*)’: 2025-12-30T10:21:58,530 interfaces/Python/RNA_wrap.cpp:61880:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,530 61880 | fail: 2025-12-30T10:21:58,531 | ^~~~ 2025-12-30T10:21:58,531 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_pf_smooth_set(PyObject*)’: 2025-12-30T10:21:58,532 interfaces/Python/RNA_wrap.cpp:61900:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,533 61900 | fail: 2025-12-30T10:21:58,533 | ^~~~ 2025-12-30T10:21:58,534 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_tetra_loop_set(PyObject*)’: 2025-12-30T10:21:58,534 interfaces/Python/RNA_wrap.cpp:61920:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,535 61920 | fail: 2025-12-30T10:21:58,535 | ^~~~ 2025-12-30T10:21:58,536 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_special_hp_set(PyObject*)’: 2025-12-30T10:21:58,537 interfaces/Python/RNA_wrap.cpp:61940:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,537 61940 | fail: 2025-12-30T10:21:58,538 | ^~~~ 2025-12-30T10:21:58,538 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLonelyPairs_set(PyObject*)’: 2025-12-30T10:21:58,539 interfaces/Python/RNA_wrap.cpp:61960:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,540 61960 | fail: 2025-12-30T10:21:58,540 | ^~~~ 2025-12-30T10:21:58,541 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noLP_set(PyObject*)’: 2025-12-30T10:21:58,542 interfaces/Python/RNA_wrap.cpp:61980:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,543 61980 | fail: 2025-12-30T10:21:58,543 | ^~~~ 2025-12-30T10:21:58,544 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGU_set(PyObject*)’: 2025-12-30T10:21:58,545 interfaces/Python/RNA_wrap.cpp:62000:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,545 62000 | fail: 2025-12-30T10:21:58,546 | ^~~~ 2025-12-30T10:21:58,547 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_no_closingGU_set(PyObject*)’: 2025-12-30T10:21:58,548 interfaces/Python/RNA_wrap.cpp:62020:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,548 62020 | fail: 2025-12-30T10:21:58,549 | ^~~~ 2025-12-30T10:21:58,550 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_noGUclosure_set(PyObject*)’: 2025-12-30T10:21:58,550 interfaces/Python/RNA_wrap.cpp:62040:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,551 62040 | fail: 2025-12-30T10:21:58,552 | ^~~~ 2025-12-30T10:21:58,553 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_logML_set(PyObject*)’: 2025-12-30T10:21:58,553 interfaces/Python/RNA_wrap.cpp:62060:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,554 62060 | fail: 2025-12-30T10:21:58,555 | ^~~~ 2025-12-30T10:21:58,556 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_set(PyObject*)’: 2025-12-30T10:21:58,556 interfaces/Python/RNA_wrap.cpp:62080:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,557 62080 | fail: 2025-12-30T10:21:58,558 | ^~~~ 2025-12-30T10:21:58,558 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_circ_penalty_set(PyObject*)’: 2025-12-30T10:21:58,559 interfaces/Python/RNA_wrap.cpp:62100:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,560 62100 | fail: 2025-12-30T10:21:58,561 | ^~~~ 2025-12-30T10:21:58,562 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_gquad_set(PyObject*)’: 2025-12-30T10:21:58,562 interfaces/Python/RNA_wrap.cpp:62120:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,563 62120 | fail: 2025-12-30T10:21:58,563 | ^~~~ 2025-12-30T10:21:58,564 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_uniq_ML_set(PyObject*)’: 2025-12-30T10:21:58,565 interfaces/Python/RNA_wrap.cpp:62140:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,565 62140 | fail: 2025-12-30T10:21:58,566 | ^~~~ 2025-12-30T10:21:58,566 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_energy_set_set(PyObject*)’: 2025-12-30T10:21:58,567 interfaces/Python/RNA_wrap.cpp:62160:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,567 62160 | fail: 2025-12-30T10:21:58,568 | ^~~~ 2025-12-30T10:21:58,569 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_backtrack_set(PyObject*)’: 2025-12-30T10:21:58,569 interfaces/Python/RNA_wrap.cpp:62180:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,570 62180 | fail: 2025-12-30T10:21:58,570 | ^~~~ 2025-12-30T10:21:58,571 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_do_backtrack_set(PyObject*)’: 2025-12-30T10:21:58,572 interfaces/Python/RNA_wrap.cpp:62223:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,572 62223 | fail: 2025-12-30T10:21:58,573 | ^~~~ 2025-12-30T10:21:58,574 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_compute_bpp_set(PyObject*)’: 2025-12-30T10:21:58,574 interfaces/Python/RNA_wrap.cpp:62243:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,575 62243 | fail: 2025-12-30T10:21:58,576 | ^~~~ 2025-12-30T10:21:58,576 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_max_bp_span_set(PyObject*)’: 2025-12-30T10:21:58,577 interfaces/Python/RNA_wrap.cpp:62263:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,578 62263 | fail: 2025-12-30T10:21:58,579 | ^~~~ 2025-12-30T10:21:58,579 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_min_loop_size_set(PyObject*)’: 2025-12-30T10:21:58,580 interfaces/Python/RNA_wrap.cpp:62283:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,581 62283 | fail: 2025-12-30T10:21:58,581 | ^~~~ 2025-12-30T10:21:58,582 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_window_size_set(PyObject*)’: 2025-12-30T10:21:58,583 interfaces/Python/RNA_wrap.cpp:62303:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,583 62303 | fail: 2025-12-30T10:21:58,584 | ^~~~ 2025-12-30T10:21:58,585 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_ribo_set(PyObject*)’: 2025-12-30T10:21:58,585 interfaces/Python/RNA_wrap.cpp:62346:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,586 62346 | fail: 2025-12-30T10:21:58,587 | ^~~~ 2025-12-30T10:21:58,587 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_cv_fact_set(PyObject*)’: 2025-12-30T10:21:58,588 interfaces/Python/RNA_wrap.cpp:62366:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,589 62366 | fail: 2025-12-30T10:21:58,590 | ^~~~ 2025-12-30T10:21:58,590 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_nc_fact_set(PyObject*)’: 2025-12-30T10:21:58,591 interfaces/Python/RNA_wrap.cpp:62386:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,592 62386 | fail: 2025-12-30T10:21:58,593 | ^~~~ 2025-12-30T10:21:58,593 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_sfact_set(PyObject*)’: 2025-12-30T10:21:58,594 interfaces/Python/RNA_wrap.cpp:62406:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,595 62406 | fail: 2025-12-30T10:21:58,596 | ^~~~ 2025-12-30T10:21:58,596 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_salt_set(PyObject*)’: 2025-12-30T10:21:58,597 interfaces/Python/RNA_wrap.cpp:62426:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,597 62426 | fail: 2025-12-30T10:21:58,598 | ^~~~ 2025-12-30T10:21:58,598 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInit_set(PyObject*)’: 2025-12-30T10:21:58,599 interfaces/Python/RNA_wrap.cpp:62446:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,600 62446 | fail: 2025-12-30T10:21:58,600 | ^~~~ 2025-12-30T10:21:58,601 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_saltDPXInitFact_set(PyObject*)’: 2025-12-30T10:21:58,601 interfaces/Python/RNA_wrap.cpp:62466:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:58,602 62466 | fail: 2025-12-30T10:21:58,603 | ^~~~ 2025-12-30T10:21:59,966 interfaces/Python/RNA_wrap.cpp: In function ‘int Swig_var_symbolset_set(PyObject*)’: 2025-12-30T10:21:59,967 interfaces/Python/RNA_wrap.cpp:84000:1: warning: label ‘fail’ defined but not used [-Wunused-label] 2025-12-30T10:21:59,968 84000 | fail: 2025-12-30T10:21:59,968 | ^~~~ 2025-12-30T10:22:00,948 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:22:00,949 interfaces/Python/RNA_wrap.cpp:99735:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-30T10:22:00,950 99735 | PyObject *o, *o2, *o3; 2025-12-30T10:22:00,950 | ^~ 2025-12-30T10:22:00,953 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:22:00,954 interfaces/Python/RNA_wrap.cpp:99818:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-30T10:22:00,955 99818 | PyObject *o, *o2, *o3; 2025-12-30T10:22:00,955 | ^~ 2025-12-30T10:22:00,959 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:22:00,960 interfaces/Python/RNA_wrap.cpp:99909:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-30T10:22:00,961 99909 | PyObject *o, *o2, *o3; 2025-12-30T10:22:00,961 | ^~ 2025-12-30T10:22:01,108 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:22:01,109 interfaces/Python/RNA_wrap.cpp:102228:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-30T10:22:01,110 102228 | PyObject *o, *o2, *o3; 2025-12-30T10:22:01,110 | ^~ 2025-12-30T10:22:01,111 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:22:01,112 interfaces/Python/RNA_wrap.cpp:102474:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-30T10:22:01,112 102474 | PyObject *o, *o2, *o3; 2025-12-30T10:22:01,113 | ^~ 2025-12-30T10:22:01,128 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:22:01,129 interfaces/Python/RNA_wrap.cpp:102758:19: warning: unused variable ‘o2’ [-Wunused-variable] 2025-12-30T10:22:01,130 102758 | PyObject *o, *o2, *o3; 2025-12-30T10:22:01,130 | ^~ 2025-12-30T10:22:01,478 interfaces/Python/RNA_wrap.cpp: In function ‘void SWIG_PropagateClientData()’: 2025-12-30T10:22:01,479 interfaces/Python/RNA_wrap.cpp:116615:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:22:01,480 116615 | for (cast = head; (cast - head) <= head->value; cast++) { 2025-12-30T10:22:01,480 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2025-12-30T10:22:04,767 interfaces/Python/RNA_wrap.cpp: At global scope: 2025-12-30T10:22:04,768 interfaces/Python/RNA_wrap.cpp:11368:1: warning: ‘double python_wrap_probing_data_trans_cb(double, vrna_math_fun_dbl_opt_t)’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:22:04,768 11368 | python_wrap_probing_data_trans_cb(double reactivity, 2025-12-30T10:22:04,769 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:22:43,113 In file included from /usr/include/c++/12/vector:70, 2025-12-30T10:22:43,114 from interfaces/Python/RNA_wrap.cpp:4855: 2025-12-30T10:22:43,114 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-30T10:22:43,115 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:22:43,115 739 | vector<_Tp, _Alloc>:: 2025-12-30T10:22:43,116 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:22:43,117 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:22:43,117 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:22:45,447 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’: 2025-12-30T10:22:45,448 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:22:45,449 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:22:45,449 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:22:47,524 interfaces/Python/RNA_wrap.cpp: In function ‘double python_wrap_probing_data_cb(double, vrna_math_fun_dbl_opt_t)’: 2025-12-30T10:22:47,525 interfaces/Python/RNA_wrap.cpp:11488:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:22:47,526 11488 | return ret; 2025-12-30T10:22:47,526 | ^~~ 2025-12-30T10:22:47,527 interfaces/Python/RNA_wrap.cpp:11451:10: note: ‘ret’ was declared here 2025-12-30T10:22:47,528 11451 | double ret; 2025-12-30T10:22:47,528 | ^~~ 2025-12-30T10:23:18,599 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:23:18,600 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:23:18,601 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-30T10:23:18,602 | ^ 2025-12-30T10:23:18,609 interfaces/Python/RNA_wrap.cpp:102175:26: note: ‘retval5’ was declared here 2025-12-30T10:23:18,609 102175 | vrna_pbacktrack_mem_t *retval5 ; 2025-12-30T10:23:18,610 | ^~~~~~~ 2025-12-30T10:23:18,711 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:23:18,712 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval6’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:23:18,712 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-30T10:23:18,713 | ^ 2025-12-30T10:23:18,721 interfaces/Python/RNA_wrap.cpp:102416:26: note: ‘retval6’ was declared here 2025-12-30T10:23:18,722 102416 | vrna_pbacktrack_mem_t *retval6 ; 2025-12-30T10:23:18,722 | ^~~~~~~ 2025-12-30T10:23:18,836 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_4(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:23:18,837 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval7’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:23:18,838 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-30T10:23:18,838 | ^ 2025-12-30T10:23:18,846 interfaces/Python/RNA_wrap.cpp:102695:26: note: ‘retval7’ was declared here 2025-12-30T10:23:18,847 102695 | vrna_pbacktrack_mem_t *retval7 ; 2025-12-30T10:23:18,848 | ^~~~~~~ 2025-12-30T10:23:36,944 /usr/include/c++/12/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-30T10:23:36,944 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:23:36,945 739 | vector<_Tp, _Alloc>:: 2025-12-30T10:23:36,946 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:23:36,947 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:23:36,947 /usr/include/c++/12/bits/vector.tcc:739:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:01,666 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_move_neighbor_diff__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:24:01,667 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘temp4’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:24:01,668 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-30T10:24:01,668 | ^ 2025-12-30T10:24:01,676 interfaces/Python/RNA_wrap.cpp:100517:29: note: ‘temp4’ was declared here 2025-12-30T10:24:01,677 100517 | var_array< vrna_move_t > *temp4 ; 2025-12-30T10:24:01,678 | ^~~~~ 2025-12-30T10:24:05,908 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2025-12-30T10:24:05,916 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:05,916 439 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:05,917 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:05,958 In file included from /usr/include/c++/12/vector:64: 2025-12-30T10:24:05,959 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:05,959 inlined from ‘void std_vector_Sl_double_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6552:22, 2025-12-30T10:24:05,960 inlined from ‘PyObject* _wrap_DoubleVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28064:38: 2025-12-30T10:24:05,960 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:05,961 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:05,961 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:06,016 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,017 inlined from ‘std::vector > my_equilibrium_constants(std::vector >, std::vector >, std::vector >, std::allocator > > >, double, size_t, size_t)’ at interfaces/Python/RNA_wrap.cpp:13605:33: 2025-12-30T10:24:06,018 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,018 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:06,019 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:06,088 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,089 inlined from ‘std::vector > my_equilibrium_conc(std::vector >, std::vector >, std::vector >, std::allocator > > >, size_t, size_t)’ at interfaces/Python/RNA_wrap.cpp:13650:31: 2025-12-30T10:24:06,090 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,090 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:06,091 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:06,091 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,092 inlined from ‘std::vector > my_equilibrium_conc(std::vector >, std::vector >, std::vector >, std::allocator > > >, size_t, size_t)’ at interfaces/Python/RNA_wrap.cpp:13654:31: 2025-12-30T10:24:06,092 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,093 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:06,094 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:06,184 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,184 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5799:30: 2025-12-30T10:24:06,185 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,185 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:06,186 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:06,186 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,187 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5814:28: 2025-12-30T10:24:06,187 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,188 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:06,189 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:06,261 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,261 inlined from ‘PyObject* _wrap_DoubleVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28783:24: 2025-12-30T10:24:06,262 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,263 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:06,263 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:06,301 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]’: 2025-12-30T10:24:06,302 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:06,303 175 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:06,303 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,317 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = double; _Alloc = std::allocator]’: 2025-12-30T10:24:06,317 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:06,318 189 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:06,319 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,319 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:06,360 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,361 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20: 2025-12-30T10:24:06,362 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,363 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:06,363 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,364 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,364 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5903:27: 2025-12-30T10:24:06,365 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,365 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:06,366 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,366 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,367 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5915:33: 2025-12-30T10:24:06,367 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,368 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:06,368 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,474 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,475 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-30T10:24:06,476 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5839:23: 2025-12-30T10:24:06,476 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:06,477 1779 | _M_range_insert(__pos, __first, __last, 2025-12-30T10:24:06,477 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,478 1780 | std::__iterator_category(__first)); 2025-12-30T10:24:06,479 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,480 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,480 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,481 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5846:22: 2025-12-30T10:24:06,481 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,482 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:06,482 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,482 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,483 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-30T10:24:06,483 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5849:23: 2025-12-30T10:24:06,484 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:06,484 1779 | _M_range_insert(__pos, __first, __last, 2025-12-30T10:24:06,485 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,486 1780 | std::__iterator_category(__first)); 2025-12-30T10:24:06,486 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,487 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,584 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:06,585 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20, 2025-12-30T10:24:06,585 inlined from ‘void std_vector_Sl_double_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6489:21, 2025-12-30T10:24:06,586 inlined from ‘PyObject* _wrap_DoubleVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:27515:46: 2025-12-30T10:24:06,586 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:06,587 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:06,588 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,638 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = double; _Tp = double; _Alloc = std::allocator]’: 2025-12-30T10:24:06,638 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:06,639 407 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:06,639 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:06,699 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: 2025-12-30T10:24:06,699 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:06,700 523 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:06,700 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,318 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vrna_path_s&}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-30T10:24:15,318 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:15,319 439 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:15,320 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,363 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,363 inlined from ‘std::vector > my_get_path(std::string, std::string, std::string, int)’ at interfaces/Python/RNA_wrap.cpp:13816:20: 2025-12-30T10:24:15,364 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,365 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:15,365 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:15,434 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,435 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5799:30: 2025-12-30T10:24:15,436 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,436 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:15,437 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:15,438 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,438 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5814:28: 2025-12-30T10:24:15,439 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,440 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:15,441 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:15,519 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,519 inlined from ‘PyObject* _wrap_PathVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48384:24: 2025-12-30T10:24:15,520 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,520 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:15,521 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:15,571 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,571 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7654:22, 2025-12-30T10:24:15,572 inlined from ‘PyObject* _wrap_PathVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:47665:43: 2025-12-30T10:24:15,573 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,573 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:15,574 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:15,617 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-30T10:24:15,618 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:15,619 175 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:15,619 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,633 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-30T10:24:15,634 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:15,634 189 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:15,635 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,636 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:15,677 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,678 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20: 2025-12-30T10:24:15,679 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,680 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:15,680 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,681 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,681 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5903:27: 2025-12-30T10:24:15,682 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,682 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:15,683 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,683 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,684 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5915:33: 2025-12-30T10:24:15,684 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,685 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:15,685 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,790 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,791 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-30T10:24:15,792 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5839:23: 2025-12-30T10:24:15,792 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:15,793 1779 | _M_range_insert(__pos, __first, __last, 2025-12-30T10:24:15,794 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,794 1780 | std::__iterator_category(__first)); 2025-12-30T10:24:15,795 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,796 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,797 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,797 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5846:22: 2025-12-30T10:24:15,798 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,799 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:15,799 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,800 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,800 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-30T10:24:15,800 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5849:23: 2025-12-30T10:24:15,801 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:15,802 1779 | _M_range_insert(__pos, __first, __last, 2025-12-30T10:24:15,802 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,803 1780 | std::__iterator_category(__first)); 2025-12-30T10:24:15,804 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,804 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,907 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:15,908 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20, 2025-12-30T10:24:15,909 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:7591:21, 2025-12-30T10:24:15,909 inlined from ‘PyObject* _wrap_PathVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:47116:51: 2025-12-30T10:24:15,910 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:15,911 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:15,912 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:15,962 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = vrna_path_s; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-30T10:24:15,962 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:15,963 407 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:15,963 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:16,028 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-30T10:24:16,029 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:16,030 523 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:16,031 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,030 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const duplex_list_t&}; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-30T10:24:18,031 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:18,032 439 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:18,032 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,140 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,141 inlined from ‘void std_vector_Sl_duplex_list_t_Sg__append(std::vector >*, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:13456:22, 2025-12-30T10:24:18,142 inlined from ‘PyObject* _wrap_DuplexVector_append(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87753:45: 2025-12-30T10:24:18,142 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,143 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:18,144 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:18,218 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,219 inlined from ‘std::vector > my_duplex_subopt(std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:13486:20: 2025-12-30T10:24:18,220 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,220 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:18,221 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:18,347 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,348 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5799:30: 2025-12-30T10:24:18,348 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,349 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:18,350 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:18,351 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,351 inlined from ‘Sequence* swig::getslice(const Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5814:28: 2025-12-30T10:24:18,351 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,352 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:18,353 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:18,496 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,497 inlined from ‘PyObject* _wrap_DuplexVector_push_back(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88472:24: 2025-12-30T10:24:18,498 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,498 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:18,499 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:18,580 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-30T10:24:18,580 /usr/include/c++/12/bits/vector.tcc:175:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:18,581 175 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:18,581 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,651 /usr/include/c++/12/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(iterator, iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-30T10:24:18,652 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:18,653 189 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:18,654 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,654 /usr/include/c++/12/bits/vector.tcc:189:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:18,724 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,725 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20: 2025-12-30T10:24:18,726 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,726 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:18,727 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,728 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,729 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5903:27: 2025-12-30T10:24:18,729 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,730 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:18,730 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,730 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,731 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5915:33: 2025-12-30T10:24:18,731 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,732 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:18,733 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,857 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,858 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-30T10:24:18,858 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5839:23: 2025-12-30T10:24:18,859 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:18,860 1779 | _M_range_insert(__pos, __first, __last, 2025-12-30T10:24:18,861 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,861 1780 | std::__iterator_category(__first)); 2025-12-30T10:24:18,862 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,863 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,863 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,864 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5846:22: 2025-12-30T10:24:18,865 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,865 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:18,866 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,866 In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator > >; _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,867 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator > >; = void; _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1481:22, 2025-12-30T10:24:18,867 inlined from ‘void swig::setslice(Sequence*, Difference, Difference, Py_ssize_t, const InputSeq&) [with Sequence = std::vector >; Difference = int; InputSeq = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5849:23: 2025-12-30T10:24:18,868 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:18,868 1779 | _M_range_insert(__pos, __first, __last, 2025-12-30T10:24:18,869 | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,869 1780 | std::__iterator_category(__first)); 2025-12-30T10:24:18,870 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:18,871 /usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,994 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:18,995 inlined from ‘void swig::delslice(Sequence*, Difference, Difference, Py_ssize_t) [with Sequence = std::vector >; Difference = int]’ at interfaces/Python/RNA_wrap.cpp:5898:20, 2025-12-30T10:24:18,996 inlined from ‘void std_vector_Sl_duplex_list_t_Sg____delslice__(std::vector >*, std::vector >::difference_type, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:13393:21, 2025-12-30T10:24:18,996 inlined from ‘PyObject* _wrap_DuplexVector___delslice__(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87204:53: 2025-12-30T10:24:18,997 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:18,997 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:18,998 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:19,088 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_insert_aux(iterator, _Arg&&) [with _Arg = duplex_list_t; _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-30T10:24:19,089 /usr/include/c++/12/bits/vector.tcc:407:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:19,090 407 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:19,090 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:24,342 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:24:24,343 inlined from ‘std::vector > my_aliduplex_subopt(std::vector, std::allocator > >, std::vector, std::allocator > >, int, int)’ at interfaces/Python/RNA_wrap.cpp:13530:20: 2025-12-30T10:24:24,344 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:24,344 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:24,345 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:24,628 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2025-12-30T10:24:24,629 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:24:24,630 439 | vector<_Tp, _Alloc>:: 2025-12-30T10:24:24,630 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:24,669 In file included from /usr/include/c++/12/algorithm:61, 2025-12-30T10:24:24,669 from interfaces/Python/RNA_wrap.cpp:4852: 2025-12-30T10:24:24,670 /usr/include/c++/12/bits/stl_algo.h: In function ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’: 2025-12-30T10:24:24,670 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:24,671 4252 | transform(_InputIterator __first, _InputIterator __last, 2025-12-30T10:24:24,672 | ^~~~~~~~~ 2025-12-30T10:24:24,673 /usr/include/c++/12/bits/stl_algo.h:4252:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:24,673 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:24,674 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-30T10:24:24,674 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2025-12-30T10:24:24,675 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator > >; _UnaryOperation = double (*)(const double&)]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12: 2025-12-30T10:24:24,676 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:24,677 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-30T10:24:24,677 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:24,741 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:24,742 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-30T10:24:24,743 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:12686:20: 2025-12-30T10:24:24,743 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:24,744 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-30T10:24:24,745 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:24,745 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:24,746 inlined from ‘std::vector >, std::allocator > > > pfl_fold_up(std::string, int, int, int)’ at interfaces/Python/RNA_wrap.cpp:12690:22: 2025-12-30T10:24:24,746 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:24,747 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:24,748 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:25,078 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:25,079 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-30T10:24:25,080 inlined from ‘std::vector > my_aln_conservation_col(std::vector, std::allocator > >, vrna_md_t*, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:10348:31: 2025-12-30T10:24:25,080 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:25,081 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-30T10:24:25,081 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:25,131 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:25,131 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-30T10:24:25,132 inlined from ‘std::vector > my_aln_conservation_struct(std::vector, std::allocator > >, std::string, vrna_md_t*)’ at interfaces/Python/RNA_wrap.cpp:10325:31: 2025-12-30T10:24:25,133 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:25,134 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-30T10:24:25,134 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:25,781 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:25,782 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-30T10:24:25,783 inlined from ‘vrna_probing_data_s* probing_data_zarringhalam_comparative(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >, unsigned int)’ at interfaces/Python/RNA_wrap.cpp:11801:28: 2025-12-30T10:24:25,783 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:25,784 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-30T10:24:25,785 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:25,965 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:24:25,966 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval3’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:24:25,966 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-30T10:24:25,967 | ^ 2025-12-30T10:24:25,975 interfaces/Python/RNA_wrap.cpp:99692:26: note: ‘retval3’ was declared here 2025-12-30T10:24:25,976 99692 | vrna_pbacktrack_mem_t *retval3 ; 2025-12-30T10:24:25,977 | ^~~~~~~ 2025-12-30T10:24:26,595 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack5__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:24:26,595 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval4’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:24:26,596 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-30T10:24:26,596 | ^ 2025-12-30T10:24:26,604 interfaces/Python/RNA_wrap.cpp:99770:26: note: ‘retval4’ was declared here 2025-12-30T10:24:26,605 99770 | vrna_pbacktrack_mem_t *retval4 ; 2025-12-30T10:24:26,605 | ^~~~~~~ 2025-12-30T10:24:27,297 interfaces/Python/RNA_wrap.cpp: In function ‘PyObject* _wrap_fold_compound_pbacktrack_sub__SWIG_2(PyObject*, Py_ssize_t, PyObject**)’: 2025-12-30T10:24:27,298 interfaces/Python/RNA_wrap.cpp:1354:82: warning: ‘retval5’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:24:27,299 1354 | #define SWIG_NewPointerObj(ptr, type, flags) SWIG_Python_NewPointerObj(NULL, ptr, type, flags) 2025-12-30T10:24:27,299 | ^ 2025-12-30T10:24:27,306 interfaces/Python/RNA_wrap.cpp:99856:26: note: ‘retval5’ was declared here 2025-12-30T10:24:27,307 99856 | vrna_pbacktrack_mem_t *retval5 ; 2025-12-30T10:24:27,307 | ^~~~~~~ 2025-12-30T10:24:30,202 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:30,202 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:17661:24, 2025-12-30T10:24:30,203 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:101383:48: 2025-12-30T10:24:30,204 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:30,204 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:30,205 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:30,206 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:30,206 inlined from ‘std::vector > vrna_fold_compound_t_path_direct(vrna_fold_compound_t*, std::string, std::string, int, vrna_path_options_s*)’ at interfaces/Python/RNA_wrap.cpp:17670:24, 2025-12-30T10:24:30,207 inlined from ‘PyObject* _wrap_fold_compound_path_direct(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:101383:48: 2025-12-30T10:24:30,207 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:30,208 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:30,209 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:30,488 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:24:30,488 inlined from ‘std::vector > vrna_fold_compound_t_path_findpath(vrna_fold_compound_t*, std::string, std::string, int, int)’ at interfaces/Python/RNA_wrap.cpp:17641:24, 2025-12-30T10:24:30,489 inlined from ‘PyObject* _wrap_fold_compound_path_findpath(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:101307:50: 2025-12-30T10:24:30,490 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:30,490 1287 | _M_realloc_insert(end(), __x); 2025-12-30T10:24:30,491 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:24:39,568 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:39,569 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2025-12-30T10:24:39,570 inlined from ‘static void swig::IteratorProtocol::assign(PyObject*, Seq*) [with Seq = std::vector >; T = double]’ at interfaces/Python/RNA_wrap.cpp:5933:22: 2025-12-30T10:24:39,570 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:39,571 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2025-12-30T10:24:39,572 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:39,573 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:39,573 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2025-12-30T10:24:39,574 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:40,182 In function ‘int vrna_fold_compound_t_sc_set_up(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2025-12-30T10:24:40,182 inlined from ‘PyObject* _wrap_fold_compound_sc_set_up(PyObject*, PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:95055:51: 2025-12-30T10:24:40,183 interfaces/Python/RNA_wrap.cpp:16854:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:40,184 16854 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2025-12-30T10:24:40,184 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:41,833 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:41,834 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6554:167, 2025-12-30T10:24:41,835 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:28539:54, 2025-12-30T10:24:41,835 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28626:48: 2025-12-30T10:24:41,836 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:41,837 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:41,838 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:41,838 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:41,839 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:6555:206, 2025-12-30T10:24:41,840 inlined from ‘PyObject* _wrap_DoubleVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:28596:54, 2025-12-30T10:24:41,840 inlined from ‘PyObject* _wrap_DoubleVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28643:50: 2025-12-30T10:24:41,841 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:41,842 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:24:41,842 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:42,140 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:42,141 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5769:15, 2025-12-30T10:24:42,142 inlined from ‘void std_vector_Sl_double_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:6492:18, 2025-12-30T10:24:42,142 inlined from ‘PyObject* _wrap_DoubleVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:27556:53, 2025-12-30T10:24:42,143 inlined from ‘PyObject* _wrap_DoubleVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:27780:54: 2025-12-30T10:24:42,143 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:42,144 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:24:42,144 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:42,291 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:42,292 inlined from ‘std::vector >::iterator std_vector_Sl_double_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6556:212, 2025-12-30T10:24:42,293 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:29049:55, 2025-12-30T10:24:42,293 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:29143:51: 2025-12-30T10:24:42,294 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:42,295 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2025-12-30T10:24:42,295 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:42,296 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:42,297 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2025-12-30T10:24:42,297 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:42,298 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:42,299 inlined from ‘void std_vector_Sl_double_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:6557:213, 2025-12-30T10:24:42,299 inlined from ‘PyObject* _wrap_DoubleVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:29109:46, 2025-12-30T10:24:42,300 inlined from ‘PyObject* _wrap_DoubleVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:29167:53: 2025-12-30T10:24:42,301 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:42,302 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2025-12-30T10:24:42,302 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:42,485 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:42,486 inlined from ‘PyObject* _wrap_DoubleVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:28945:21, 2025-12-30T10:24:42,486 inlined from ‘PyObject* _wrap_DoubleVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:28994:51: 2025-12-30T10:24:42,487 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:42,487 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-12-30T10:24:42,488 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:42,619 In function ‘int vrna_fold_compound_t_sc_add_stack__SWIG_1(vrna_fold_compound_t*, std::vector >, std::vector >, unsigned int)’, 2025-12-30T10:24:42,619 inlined from ‘PyObject* _wrap_fold_compound_sc_add_stack__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:95325:62: 2025-12-30T10:24:42,620 interfaces/Python/RNA_wrap.cpp:16891:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:42,620 16891 | transform(energies.begin(), energies.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2025-12-30T10:24:42,621 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:42,806 In function ‘int vrna_fold_compound_t_sc_set_stack__SWIG_0(vrna_fold_compound_t*, std::vector >, unsigned int)’, 2025-12-30T10:24:42,807 inlined from ‘PyObject* _wrap_fold_compound_sc_set_stack__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:95103:62: 2025-12-30T10:24:42,807 interfaces/Python/RNA_wrap.cpp:16859:14: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:42,808 16859 | transform(constraints.begin(), constraints.end(), std::back_inserter(v), convert_vecdbl2vecFLR_OR_DBL); 2025-12-30T10:24:42,809 | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:24:59,919 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, 2025-12-30T10:24:59,919 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2025-12-30T10:24:59,920 inlined from ‘vrna_probing_data_s* new_vrna_probing_data_s__SWIG_5(std::vector >, std::allocator > > >, std::vector >, std::vector, std::allocator > >, std::vector >)’ at interfaces/Python/RNA_wrap.cpp:11602:28, 2025-12-30T10:24:59,921 inlined from ‘PyObject* _wrap_new_probing_data__SWIG_5(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:72190:70: 2025-12-30T10:24:59,921 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:24:59,922 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2025-12-30T10:24:59,922 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:03,299 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:25:03,300 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2025-12-30T10:25:03,301 inlined from ‘static void swig::IteratorProtocol::assign(PyObject*, Seq*) [with Seq = std::vector >; T = duplex_list_t]’ at interfaces/Python/RNA_wrap.cpp:5933:22: 2025-12-30T10:25:03,301 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:03,302 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2025-12-30T10:25:03,303 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:03,755 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:25:03,755 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:13458:195, 2025-12-30T10:25:03,756 inlined from ‘PyObject* _wrap_DuplexVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88228:61, 2025-12-30T10:25:03,757 inlined from ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88315:48: 2025-12-30T10:25:03,758 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:03,758 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:25:03,759 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:03,760 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:25:03,760 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:13459:241, 2025-12-30T10:25:03,761 inlined from ‘PyObject* _wrap_DuplexVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88285:61, 2025-12-30T10:25:03,762 inlined from ‘PyObject* _wrap_DuplexVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88332:50: 2025-12-30T10:25:03,762 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:03,763 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:25:03,764 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:04,073 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:25:04,074 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5769:15, 2025-12-30T10:25:04,074 inlined from ‘void std_vector_Sl_duplex_list_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:13396:18, 2025-12-30T10:25:04,075 inlined from ‘PyObject* _wrap_DuplexVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:87245:60, 2025-12-30T10:25:04,076 inlined from ‘PyObject* _wrap_DuplexVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:87469:54: 2025-12-30T10:25:04,076 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:04,077 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:25:04,077 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:16,717 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’: 2025-12-30T10:25:16,717 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:25:16,718 523 | vector<_Tp, _Alloc>:: 2025-12-30T10:25:16,719 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:16,987 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:25:16,988 inlined from ‘PyObject* _wrap_DuplexVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88636:21, 2025-12-30T10:25:16,989 inlined from ‘PyObject* _wrap_DuplexVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88683:51: 2025-12-30T10:25:16,989 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:16,990 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-12-30T10:25:16,991 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:17,169 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:25:17,170 inlined from ‘std::vector >::iterator std_vector_Sl_duplex_list_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:13460:247, 2025-12-30T10:25:17,171 inlined from ‘PyObject* _wrap_DuplexVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88739:62, 2025-12-30T10:25:17,172 inlined from ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88832:51: 2025-12-30T10:25:17,173 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:17,173 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2025-12-30T10:25:17,174 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:17,174 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:17,175 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2025-12-30T10:25:17,176 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:17,176 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = duplex_list_t; _Alloc = std::allocator]’, 2025-12-30T10:25:17,177 inlined from ‘void std_vector_Sl_duplex_list_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:13461:248, 2025-12-30T10:25:17,178 inlined from ‘PyObject* _wrap_DuplexVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:88800:53, 2025-12-30T10:25:17,178 inlined from ‘PyObject* _wrap_DuplexVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:88854:53: 2025-12-30T10:25:17,179 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:17,179 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2025-12-30T10:25:17,180 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,358 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {vrna_path_s}; _Tp = vrna_path_s; _Alloc = std::allocator]’: 2025-12-30T10:25:26,359 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2025-12-30T10:25:26,360 439 | vector<_Tp, _Alloc>:: 2025-12-30T10:25:26,361 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,437 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:25:26,438 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2025-12-30T10:25:26,439 inlined from ‘static void swig::IteratorProtocol::assign(PyObject*, Seq*) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5933:22, 2025-12-30T10:25:26,439 inlined from ‘static int swig::traits_asptr_stdseq::asptr(PyObject*, sequence**) [with Seq = std::vector >; T = vrna_path_s]’ at interfaces/Python/RNA_wrap.cpp:5978:45: 2025-12-30T10:25:26,440 /usr/include/c++/12/bits/vector.tcc:364:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,441 364 | _M_insert_aux(begin() + __n, std::move(__v)); 2025-12-30T10:25:26,442 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,442 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,442 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2025-12-30T10:25:26,443 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,598 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:25:26,598 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__insert__SWIG_0(std::vector >*, std::vector >::iterator, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7658:237, 2025-12-30T10:25:26,599 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48651:60, 2025-12-30T10:25:26,599 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48744:49: 2025-12-30T10:25:26,600 /usr/include/c++/12/bits/vector.tcc:157:26: note: parameter passing for argument of type ‘const __gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,601 157 | _M_insert_aux(__pos, std::move(__x_copy._M_val())); 2025-12-30T10:25:26,601 | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,602 /usr/include/c++/12/bits/vector.tcc:164:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,603 164 | _M_realloc_insert(begin() + (__position - cbegin()), __x); 2025-12-30T10:25:26,603 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,604 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:25:26,605 inlined from ‘void std_vector_Sl_vrna_path_t_Sg__insert__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::size_type, const std::vector >::value_type&)’ at interfaces/Python/RNA_wrap.cpp:7659:238, 2025-12-30T10:25:26,606 inlined from ‘PyObject* _wrap_PathVector_insert__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48712:51, 2025-12-30T10:25:26,606 inlined from ‘PyObject* _wrap_PathVector_insert(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48766:51: 2025-12-30T10:25:26,607 /usr/include/c++/12/bits/stl_vector.h:1435:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,608 1435 | _M_fill_insert(begin() + __offset, __n, __x); 2025-12-30T10:25:26,608 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,809 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:25:26,810 inlined from ‘PyObject* _wrap_PathVector_resize__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48548:21, 2025-12-30T10:25:26,811 inlined from ‘PyObject* _wrap_PathVector_resize(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48595:49: 2025-12-30T10:25:26,811 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,812 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2025-12-30T10:25:26,813 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,943 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:25:26,944 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_0(std::vector >*, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:7656:187, 2025-12-30T10:25:26,944 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48140:59, 2025-12-30T10:25:26,945 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48227:46: 2025-12-30T10:25:26,945 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,946 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:25:26,947 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:26,947 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator, const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:25:26,948 inlined from ‘std::vector >::iterator std_vector_Sl_vrna_path_t_Sg__erase__SWIG_1(std::vector >*, std::vector >::iterator, std::vector >::iterator)’ at interfaces/Python/RNA_wrap.cpp:7657:231, 2025-12-30T10:25:26,949 inlined from ‘PyObject* _wrap_PathVector_erase__SWIG_1(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:48197:59, 2025-12-30T10:25:26,950 inlined from ‘PyObject* _wrap_PathVector_erase(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:48244:48: 2025-12-30T10:25:26,950 /usr/include/c++/12/bits/stl_vector.h:1561:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:26,951 1561 | return _M_erase(__beg + (__first - __cbeg), __beg + (__last - __cbeg)); 2025-12-30T10:25:26,952 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:27,257 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::erase(const_iterator) [with _Tp = vrna_path_s; _Alloc = std::allocator]’, 2025-12-30T10:25:27,258 inlined from ‘void swig::erase(Sequence*, const typename Sequence::iterator&) [with Sequence = std::vector >]’ at interfaces/Python/RNA_wrap.cpp:5769:15, 2025-12-30T10:25:27,259 inlined from ‘void std_vector_Sl_vrna_path_t_Sg____delitem____SWIG_0(std::vector >*, std::vector >::difference_type)’ at interfaces/Python/RNA_wrap.cpp:7594:18, 2025-12-30T10:25:27,260 inlined from ‘PyObject* _wrap_PathVector___delitem____SWIG_0(PyObject*, Py_ssize_t, PyObject**)’ at interfaces/Python/RNA_wrap.cpp:47157:58, 2025-12-30T10:25:27,261 inlined from ‘PyObject* _wrap_PathVector___delitem__(PyObject*, PyObject*)’ at interfaces/Python/RNA_wrap.cpp:47381:52: 2025-12-30T10:25:27,261 /usr/include/c++/12/bits/stl_vector.h:1530:24: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2025-12-30T10:25:27,262 1530 | { return _M_erase(begin() + (__position - cbegin())); } 2025-12-30T10:25:27,262 | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:25:52,315 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/2Dfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dfold.o -fopenmp 2025-12-30T10:25:52,589 src/ViennaRNA/2Dfold.c: In function ‘vrna_mfe_TwoD’: 2025-12-30T10:25:52,590 src/ViennaRNA/2Dfold.c:329:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,590 329 | if ((d1 >= ((md->circ) ? matrices->k_min_Fc : matrices->k_min_F5[length])) 2025-12-30T10:25:52,591 | ^~ 2025-12-30T10:25:52,592 src/ViennaRNA/2Dfold.c:330:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,592 330 | && (d1 <= ((md->circ) ? matrices->k_max_Fc : matrices->k_max_F5[length]))) { 2025-12-30T10:25:52,593 | ^~ 2025-12-30T10:25:52,594 src/ViennaRNA/2Dfold.c:332:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,594 332 | d2 <= ((md->circ) ? matrices->l_max_Fc[d1] : matrices->l_max_F5[length][d1]); 2025-12-30T10:25:52,595 | ^~ 2025-12-30T10:25:52,596 src/ViennaRNA/2Dfold.c: In function ‘vrna_backtrack5_TwoD’: 2025-12-30T10:25:52,596 src/ViennaRNA/2Dfold.c:404:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,597 404 | if (j < vc->params->model_details.min_loop_size + 2) 2025-12-30T10:25:52,598 | ^ 2025-12-30T10:25:52,598 src/ViennaRNA/2Dfold.c: In function ‘mfe_linear’: 2025-12-30T10:25:52,599 src/ViennaRNA/2Dfold.c:600:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,600 600 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2025-12-30T10:25:52,600 | ^~ 2025-12-30T10:25:52,601 src/ViennaRNA/2Dfold.c:600:64: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,602 600 | if (((cnt1 + d1) <= maxD1) && ((cnt2 + d2) <= maxD2)) { 2025-12-30T10:25:52,602 | ^~ 2025-12-30T10:25:52,603 src/ViennaRNA/2Dfold.c:716:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,604 716 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2025-12-30T10:25:52,604 | ^~ 2025-12-30T10:25:52,605 src/ViennaRNA/2Dfold.c:716:80: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,606 716 | if (((cnt1 + cnt3 + d1) <= maxD1) && ((cnt2 + cnt4 + d2) <= maxD2)) { 2025-12-30T10:25:52,606 | ^~ 2025-12-30T10:25:52,611 src/ViennaRNA/2Dfold.c:1036:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,612 1036 | if (j > turn + 2) { 2025-12-30T10:25:52,613 | ^ 2025-12-30T10:25:52,627 src/ViennaRNA/2Dfold.c:1406:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,628 1406 | for (cnt1 = seq_length; cnt1 >= seq_length - turn - 1; cnt1--) { 2025-12-30T10:25:52,628 | ^~ 2025-12-30T10:25:52,634 src/ViennaRNA/2Dfold.c: In function ‘backtrack_f5’: 2025-12-30T10:25:52,636 src/ViennaRNA/2Dfold.c:1626:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,636 1626 | if (j < turn + 2) 2025-12-30T10:25:52,637 | ^ 2025-12-30T10:25:52,638 src/ViennaRNA/2Dfold.c:1652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,639 1652 | } else if ((k >= da) && (l >= db)) { 2025-12-30T10:25:52,639 | ^~ 2025-12-30T10:25:52,640 src/ViennaRNA/2Dfold.c:1652:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,640 1652 | } else if ((k >= da) && (l >= db)) { 2025-12-30T10:25:52,641 | ^~ 2025-12-30T10:25:52,641 src/ViennaRNA/2Dfold.c:1654:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,642 1654 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2025-12-30T10:25:52,643 | ^~ 2025-12-30T10:25:52,643 src/ViennaRNA/2Dfold.c:1654:50: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,644 1654 | if ((k - da >= k_min_F5[j - 1]) && (k - da <= k_max_F5[j - 1])) { 2025-12-30T10:25:52,645 | ^~ 2025-12-30T10:25:52,645 src/ViennaRNA/2Dfold.c:1655:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,646 1655 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2025-12-30T10:25:52,646 | ^~ 2025-12-30T10:25:52,647 src/ViennaRNA/2Dfold.c:1655:60: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,648 1655 | if ((l - db >= l_min_F5[j - 1][k - da]) && (l - db <= l_max_F5[j - 1][k - da])) { 2025-12-30T10:25:52,648 | ^~ 2025-12-30T10:25:52,652 src/ViennaRNA/2Dfold.c:1760:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,652 1760 | } else if ((k >= d1a) && (l >= d1b)) { 2025-12-30T10:25:52,653 | ^~ 2025-12-30T10:25:52,653 src/ViennaRNA/2Dfold.c:1760:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,654 1760 | } else if ((k >= d1a) && (l >= d1b)) { 2025-12-30T10:25:52,655 | ^~ 2025-12-30T10:25:52,655 In file included from src/ViennaRNA/2Dfold.c:17: 2025-12-30T10:25:52,656 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,657 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,657 | ^ 2025-12-30T10:25:52,658 src/ViennaRNA/2Dfold.c:1761:23: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,658 1761 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2025-12-30T10:25:52,659 | ^~~~ 2025-12-30T10:25:52,659 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,660 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,660 | ^~~ 2025-12-30T10:25:52,660 src/ViennaRNA/2Dfold.c:1761:23: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,661 1761 | int k_f_max = MIN2(k - d1a, k_max_F5[i - 1]); 2025-12-30T10:25:52,662 | ^~~~ 2025-12-30T10:25:52,662 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,663 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,663 | ^ 2025-12-30T10:25:52,664 src/ViennaRNA/2Dfold.c:1764:25: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,664 1764 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2025-12-30T10:25:52,665 | ^~~~ 2025-12-30T10:25:52,665 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,666 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,666 | ^~~ 2025-12-30T10:25:52,667 src/ViennaRNA/2Dfold.c:1764:25: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,668 1764 | int l_f_max = MIN2(l - d1b, l_max_F5[i - 1][cnt1]); 2025-12-30T10:25:52,668 | ^~~~ 2025-12-30T10:25:52,669 src/ViennaRNA/2Dfold.c: In function ‘backtrack_c’: 2025-12-30T10:25:52,669 src/ViennaRNA/2Dfold.c:1868:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,670 1868 | if ((unsigned int)base_d1 == k) 2025-12-30T10:25:52,671 | ^~ 2025-12-30T10:25:52,671 src/ViennaRNA/2Dfold.c:1869:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,672 1869 | if ((unsigned int)base_d2 == l) 2025-12-30T10:25:52,672 | ^~ 2025-12-30T10:25:52,673 src/ViennaRNA/2Dfold.c:1914:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,674 1914 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2025-12-30T10:25:52,674 | ^ 2025-12-30T10:25:52,675 src/ViennaRNA/2Dfold.c:1914:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,676 1914 | if (((cnt1 + d1) > maxD1) || ((cnt2 + d2) > maxD2)) { 2025-12-30T10:25:52,676 | ^ 2025-12-30T10:25:52,678 src/ViennaRNA/2Dfold.c:2022:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,678 2022 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2025-12-30T10:25:52,679 | ^ 2025-12-30T10:25:52,680 src/ViennaRNA/2Dfold.c:2022:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,680 2022 | if (((cnt1 + cnt3 + d1) > maxD1) || ((cnt2 + cnt4 + d2) > maxD2)) { 2025-12-30T10:25:52,681 | ^ 2025-12-30T10:25:52,690 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m’: 2025-12-30T10:25:52,692 src/ViennaRNA/2Dfold.c:2297:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,692 2297 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,692 | ^~ 2025-12-30T10:25:52,694 src/ViennaRNA/2Dfold.c:2297:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,694 2297 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,694 | ^~ 2025-12-30T10:25:52,696 src/ViennaRNA/2Dfold.c:2298:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,696 2298 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2025-12-30T10:25:52,697 | ^~ 2025-12-30T10:25:52,698 src/ViennaRNA/2Dfold.c:2298:63: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,698 2298 | if ((k - d1 >= k_min_M[my_iindx[i + 1] - j]) && (k - d1 <= k_max_M[my_iindx[i + 1] - j])) { 2025-12-30T10:25:52,699 | ^~ 2025-12-30T10:25:52,700 src/ViennaRNA/2Dfold.c:2299:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,700 2299 | if ((l - d2 >= l_min_M[my_iindx[i + 1] - j][k - d1]) && 2025-12-30T10:25:52,701 | ^~ 2025-12-30T10:25:52,702 src/ViennaRNA/2Dfold.c:2300:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,703 2300 | (l - d2 <= l_max_M[my_iindx[i + 1] - j][k - d1])) { 2025-12-30T10:25:52,703 | ^~ 2025-12-30T10:25:52,704 src/ViennaRNA/2Dfold.c:2314:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,705 2314 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,705 | ^~ 2025-12-30T10:25:52,706 src/ViennaRNA/2Dfold.c:2314:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,707 2314 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,707 | ^~ 2025-12-30T10:25:52,708 src/ViennaRNA/2Dfold.c:2315:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,709 2315 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2025-12-30T10:25:52,709 | ^~ 2025-12-30T10:25:52,711 src/ViennaRNA/2Dfold.c:2315:52: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,711 2315 | if ((k - d1 >= k_min_M[ij + 1]) && (k - d1 <= k_max_M[ij + 1])) { 2025-12-30T10:25:52,712 | ^~ 2025-12-30T10:25:52,713 src/ViennaRNA/2Dfold.c:2316:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,713 2316 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2025-12-30T10:25:52,714 | ^~ 2025-12-30T10:25:52,715 src/ViennaRNA/2Dfold.c:2316:62: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,715 2316 | if ((l - d2 >= l_min_M[ij + 1][k - d1]) && (l - d2 <= l_max_M[ij + 1][k - d1])) { 2025-12-30T10:25:52,716 | ^~ 2025-12-30T10:25:52,720 src/ViennaRNA/2Dfold.c:2368:14: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,721 2368 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,721 | ^~ 2025-12-30T10:25:52,722 src/ViennaRNA/2Dfold.c:2368:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,723 2368 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,723 | ^~ 2025-12-30T10:25:52,724 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,725 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,725 | ^ 2025-12-30T10:25:52,726 src/ViennaRNA/2Dfold.c:2369:55: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,726 2369 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2025-12-30T10:25:52,726 | ^~~~ 2025-12-30T10:25:52,727 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,727 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,728 | ^~~ 2025-12-30T10:25:52,728 src/ViennaRNA/2Dfold.c:2369:55: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,729 2369 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2025-12-30T10:25:52,730 | ^~~~ 2025-12-30T10:25:52,730 src/ViennaRNA/2Dfold.c:2369:52: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,730 2369 | for (cnt1 = k_min_M[my_iindx[i] - u]; cnt1 <= MIN2(k - d1, k_max_M[my_iindx[i] - u]); 2025-12-30T10:25:52,731 | ^~ 2025-12-30T10:25:52,732 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,732 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,733 | ^ 2025-12-30T10:25:52,733 src/ViennaRNA/2Dfold.c:2372:24: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,734 2372 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2025-12-30T10:25:52,734 | ^~~~ 2025-12-30T10:25:52,735 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,735 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,736 | ^~~ 2025-12-30T10:25:52,737 src/ViennaRNA/2Dfold.c:2372:24: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,737 2372 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2025-12-30T10:25:52,738 | ^~~~ 2025-12-30T10:25:52,739 src/ViennaRNA/2Dfold.c:2372:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,739 2372 | cnt2 <= MIN2(l - d2, l_max_M[my_iindx[i] - u][cnt1]); cnt2 += 2) 2025-12-30T10:25:52,740 | ^~ 2025-12-30T10:25:52,740 src/ViennaRNA/2Dfold.c:2373:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,741 2373 | if ((k - d1 - cnt1 >= k_min_C[my_iindx[u + 1] - j]) && 2025-12-30T10:25:52,741 | ^~ 2025-12-30T10:25:52,741 src/ViennaRNA/2Dfold.c:2374:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,742 2374 | (k - d1 - cnt1 <= k_max_C[my_iindx[u + 1] - j])) { 2025-12-30T10:25:52,742 | ^~ 2025-12-30T10:25:52,743 src/ViennaRNA/2Dfold.c:2375:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,743 2375 | if ((l - d2 - cnt2 >= l_min_C[my_iindx[u + 1] - j][k - d1 - cnt1]) && 2025-12-30T10:25:52,744 | ^~ 2025-12-30T10:25:52,744 src/ViennaRNA/2Dfold.c:2376:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,745 2376 | (l - d2 - cnt2 <= l_max_C[my_iindx[u + 1] - j][k - d1 - cnt1])) { 2025-12-30T10:25:52,745 | ^~ 2025-12-30T10:25:52,747 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m1’: 2025-12-30T10:25:52,749 src/ViennaRNA/2Dfold.c:2496:12: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,750 2496 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,750 | ^~ 2025-12-30T10:25:52,752 src/ViennaRNA/2Dfold.c:2496:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,752 2496 | if (d1 <= k && d2 <= l) { 2025-12-30T10:25:52,753 | ^~ 2025-12-30T10:25:52,754 src/ViennaRNA/2Dfold.c:2497:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,754 2497 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2025-12-30T10:25:52,755 | ^~ 2025-12-30T10:25:52,756 src/ViennaRNA/2Dfold.c:2497:51: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,757 2497 | if ((k - d1 >= k_min_M1[ij + 1]) && (k - d1 <= k_max_M1[ij + 1])) { 2025-12-30T10:25:52,757 | ^~ 2025-12-30T10:25:52,758 src/ViennaRNA/2Dfold.c:2498:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,759 2498 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2025-12-30T10:25:52,759 | ^~ 2025-12-30T10:25:52,761 src/ViennaRNA/2Dfold.c:2498:61: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,761 2498 | if ((l - d2 >= l_min_M1[ij + 1][k - d1]) && (l - d2 <= l_max_M1[ij + 1][k - d1])) { 2025-12-30T10:25:52,762 | ^~ 2025-12-30T10:25:52,764 src/ViennaRNA/2Dfold.c: In function ‘backtrack_fc’: 2025-12-30T10:25:52,766 src/ViennaRNA/2Dfold.c:2618:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,767 2618 | if (u < turn) 2025-12-30T10:25:52,767 | ^ 2025-12-30T10:25:52,771 src/ViennaRNA/2Dfold.c:2672:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,772 2672 | if (u < turn) 2025-12-30T10:25:52,772 | ^ 2025-12-30T10:25:52,779 src/ViennaRNA/2Dfold.c:2782:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,780 2782 | if (seq_length > 2 * turn) { 2025-12-30T10:25:52,781 | ^ 2025-12-30T10:25:52,786 src/ViennaRNA/2Dfold.c:2867:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,786 2867 | if ((k == referenceBPs1[my_iindx[1] - seq_length]) && 2025-12-30T10:25:52,787 | ^~ 2025-12-30T10:25:52,788 src/ViennaRNA/2Dfold.c:2868:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,789 2868 | (l == referenceBPs2[my_iindx[1] - seq_length])) 2025-12-30T10:25:52,789 | ^~ 2025-12-30T10:25:52,792 src/ViennaRNA/2Dfold.c:2885:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,793 2885 | if (u < turn) 2025-12-30T10:25:52,794 | ^ 2025-12-30T10:25:52,797 src/ViennaRNA/2Dfold.c:2908:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,798 2908 | if ((k >= d1) && (l >= d2)) { 2025-12-30T10:25:52,798 | ^~ 2025-12-30T10:25:52,800 src/ViennaRNA/2Dfold.c:2908:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,800 2908 | if ((k >= d1) && (l >= d2)) { 2025-12-30T10:25:52,801 | ^~ 2025-12-30T10:25:52,802 src/ViennaRNA/2Dfold.c:2909:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,803 2909 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2025-12-30T10:25:52,803 | ^~ 2025-12-30T10:25:52,805 src/ViennaRNA/2Dfold.c:2909:56: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,805 2909 | if ((k - d1 >= k_min_C[ij]) && (k - d1 <= k_max_C[ij])) { 2025-12-30T10:25:52,806 | ^~ 2025-12-30T10:25:52,807 src/ViennaRNA/2Dfold.c:2910:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,808 2910 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2025-12-30T10:25:52,808 | ^~ 2025-12-30T10:25:52,810 src/ViennaRNA/2Dfold.c:2910:66: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,811 2910 | if ((l - d2 >= l_min_C[ij][k - d1]) && (l - d2 <= l_max_C[ij][k - d1])) { 2025-12-30T10:25:52,811 | ^~ 2025-12-30T10:25:52,814 src/ViennaRNA/2Dfold.c:2936:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,815 2936 | if (u < turn) 2025-12-30T10:25:52,815 | ^ 2025-12-30T10:25:52,821 src/ViennaRNA/2Dfold.c:2979:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,822 2979 | if ((k >= d1) && (l >= d2)) { 2025-12-30T10:25:52,822 | ^~ 2025-12-30T10:25:52,824 src/ViennaRNA/2Dfold.c:2979:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,824 2979 | if ((k >= d1) && (l >= d2)) { 2025-12-30T10:25:52,825 | ^~ 2025-12-30T10:25:52,826 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,827 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,827 | ^ 2025-12-30T10:25:52,828 src/ViennaRNA/2Dfold.c:2980:54: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,828 2980 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2025-12-30T10:25:52,829 | ^~~~ 2025-12-30T10:25:52,829 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,830 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,830 | ^~~ 2025-12-30T10:25:52,831 src/ViennaRNA/2Dfold.c:2980:54: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,831 2980 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2025-12-30T10:25:52,832 | ^~~~ 2025-12-30T10:25:52,833 src/ViennaRNA/2Dfold.c:2980:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,833 2980 | for (cnt1 = k_min_C[ij]; cnt1 <= MIN2(k_max_C[ij], k - d1); cnt1++) 2025-12-30T10:25:52,834 | ^~ 2025-12-30T10:25:52,835 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,835 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,836 | ^ 2025-12-30T10:25:52,836 src/ViennaRNA/2Dfold.c:2981:62: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,837 2981 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2025-12-30T10:25:52,838 | ^~~~ 2025-12-30T10:25:52,838 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,839 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,840 | ^~~ 2025-12-30T10:25:52,840 src/ViennaRNA/2Dfold.c:2981:62: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,841 2981 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2025-12-30T10:25:52,841 | ^~~~ 2025-12-30T10:25:52,842 src/ViennaRNA/2Dfold.c:2981:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,842 2981 | for (cnt2 = l_min_C[ij][cnt1]; cnt2 <= MIN2(l_max_C[ij][cnt1], l - d2); 2025-12-30T10:25:52,843 | ^~ 2025-12-30T10:25:52,844 src/ViennaRNA/2Dfold.c:2983:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,845 2983 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2025-12-30T10:25:52,845 | ^~ 2025-12-30T10:25:52,845 src/ViennaRNA/2Dfold.c:2983:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,846 2983 | if ((k - d1 - cnt1 >= k_min_C[pq]) && (k - d1 - cnt1 <= k_max_C[pq])) { 2025-12-30T10:25:52,846 | ^~ 2025-12-30T10:25:52,848 src/ViennaRNA/2Dfold.c:2984:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,849 2984 | if ((l - d2 - cnt2 >= l_min_C[pq][k - d1 - cnt1]) && 2025-12-30T10:25:52,849 | ^~ 2025-12-30T10:25:52,851 src/ViennaRNA/2Dfold.c:2985:46: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,851 2985 | (l - d2 - cnt2 <= l_max_C[pq][k - d1 - cnt1])) { 2025-12-30T10:25:52,852 | ^~ 2025-12-30T10:25:52,854 src/ViennaRNA/2Dfold.c:3006:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,854 3006 | if (seq_length > 2 * turn) { 2025-12-30T10:25:52,855 | ^ 2025-12-30T10:25:52,858 src/ViennaRNA/2Dfold.c:3022:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,858 3022 | if ((k >= d1) && (l >= d2)) { 2025-12-30T10:25:52,859 | ^~ 2025-12-30T10:25:52,861 src/ViennaRNA/2Dfold.c:3022:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,861 3022 | if ((k >= d1) && (l >= d2)) { 2025-12-30T10:25:52,862 | ^~ 2025-12-30T10:25:52,863 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,864 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,865 | ^ 2025-12-30T10:25:52,865 src/ViennaRNA/2Dfold.c:3024:58: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,866 3024 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2025-12-30T10:25:52,866 | ^~~~ 2025-12-30T10:25:52,867 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,867 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,868 | ^~~ 2025-12-30T10:25:52,868 src/ViennaRNA/2Dfold.c:3024:58: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,869 3024 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2025-12-30T10:25:52,870 | ^~~~ 2025-12-30T10:25:52,870 src/ViennaRNA/2Dfold.c:3024:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,871 3024 | k_min_M[my_iindx[1] - i]; cnt1 <= MIN2(k_max_M[my_iindx[1] - i], k - d1); 2025-12-30T10:25:52,871 | ^~ 2025-12-30T10:25:52,872 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,872 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,873 | ^ 2025-12-30T10:25:52,873 src/ViennaRNA/2Dfold.c:3027:32: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,874 3027 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2025-12-30T10:25:52,874 | ^~~~ 2025-12-30T10:25:52,875 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,875 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,876 | ^~~ 2025-12-30T10:25:52,876 src/ViennaRNA/2Dfold.c:3027:32: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,877 3027 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2025-12-30T10:25:52,877 | ^~~~ 2025-12-30T10:25:52,878 src/ViennaRNA/2Dfold.c:3027:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,878 3027 | cnt2 <= MIN2(l_max_M[my_iindx[1] - i][cnt1], l - d2); cnt2 += 2) 2025-12-30T10:25:52,879 | ^~ 2025-12-30T10:25:52,881 src/ViennaRNA/2Dfold.c:3028:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,882 3028 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2025-12-30T10:25:52,882 | ^~ 2025-12-30T10:25:52,884 src/ViennaRNA/2Dfold.c:3028:78: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,885 3028 | if ((k - d1 - cnt1 >= k_min_M2[i + 1]) && (k - d1 - cnt1 <= k_max_M2[i + 1])) { 2025-12-30T10:25:52,885 | ^~ 2025-12-30T10:25:52,887 src/ViennaRNA/2Dfold.c:3029:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,887 3029 | if ((l - d2 - cnt2 >= l_min_M2[i + 1][k - d1 - cnt1]) && 2025-12-30T10:25:52,888 | ^~ 2025-12-30T10:25:52,889 src/ViennaRNA/2Dfold.c:3030:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,890 3030 | (l - d2 - cnt2 <= l_max_M2[i + 1][k - d1 - cnt1])) { 2025-12-30T10:25:52,890 | ^~ 2025-12-30T10:25:52,896 src/ViennaRNA/2Dfold.c: In function ‘backtrack_m2’: 2025-12-30T10:25:52,899 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,900 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,900 | ^ 2025-12-30T10:25:52,901 src/ViennaRNA/2Dfold.c:3177:41: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,902 3177 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2025-12-30T10:25:52,902 | ^~~~ 2025-12-30T10:25:52,903 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,904 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,904 | ^~~ 2025-12-30T10:25:52,905 src/ViennaRNA/2Dfold.c:3177:41: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,905 3177 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2025-12-30T10:25:52,906 | ^~~~ 2025-12-30T10:25:52,906 src/ViennaRNA/2Dfold.c:3177:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,906 3177 | for (cnt1 = k_min_M1[ij]; cnt1 <= MIN2(k_max_M1[ij], k - d1); cnt1++) 2025-12-30T10:25:52,907 | ^~ 2025-12-30T10:25:52,908 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,908 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,909 | ^ 2025-12-30T10:25:52,909 src/ViennaRNA/2Dfold.c:3178:49: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,910 3178 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2025-12-30T10:25:52,910 | ^~~~ 2025-12-30T10:25:52,911 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:25:52,911 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:25:52,912 | ^~~ 2025-12-30T10:25:52,913 src/ViennaRNA/2Dfold.c:3178:49: note: in expansion of macro ‘MIN2’ 2025-12-30T10:25:52,913 3178 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2025-12-30T10:25:52,914 | ^~~~ 2025-12-30T10:25:52,915 src/ViennaRNA/2Dfold.c:3178:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:25:52,915 3178 | for (cnt2 = l_min_M1[ij][cnt1]; cnt2 <= MIN2(l_max_M1[ij][cnt1], l - d2); cnt2 += 2) 2025-12-30T10:25:52,916 | ^~ 2025-12-30T10:25:52,917 src/ViennaRNA/2Dfold.c:3179:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,917 3179 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2025-12-30T10:25:52,918 | ^~ 2025-12-30T10:25:52,919 src/ViennaRNA/2Dfold.c:3179:65: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,920 3179 | if ((k - d1 - cnt1 >= k_min_M1[j3]) && (k - d1 - cnt1 <= k_max_M1[j3])) { 2025-12-30T10:25:52,921 | ^~ 2025-12-30T10:25:52,922 src/ViennaRNA/2Dfold.c:3180:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,923 3180 | if ((l - d2 - cnt2 >= l_min_M1[j3][k - d1 - cnt1]) && 2025-12-30T10:25:52,923 | ^~ 2025-12-30T10:25:52,925 src/ViennaRNA/2Dfold.c:3181:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,926 3181 | (l - d2 - cnt2 <= l_max_M1[j3][k - d1 - cnt1])) { 2025-12-30T10:25:52,926 | ^~ 2025-12-30T10:25:52,934 src/ViennaRNA/2Dfold.c: In function ‘mfe_circ’: 2025-12-30T10:25:52,937 src/ViennaRNA/2Dfold.c:3561:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,937 3561 | if (u < turn) 2025-12-30T10:25:52,938 | ^ 2025-12-30T10:25:52,946 src/ViennaRNA/2Dfold.c:3635:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,946 3635 | if (u < turn) 2025-12-30T10:25:52,947 | ^ 2025-12-30T10:25:52,961 src/ViennaRNA/2Dfold.c:3800:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:25:52,962 3800 | if (seq_length > 2 * turn) { 2025-12-30T10:25:52,963 | ^ 2025-12-30T10:26:02,382 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/2Dpfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/2Dpfold.o -fopenmp 2025-12-30T10:26:02,631 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear’: 2025-12-30T10:26:02,632 src/ViennaRNA/2Dpfold.c:435:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,632 435 | for (i = (j > turn ? (j - turn) : 1); i <= j; i++) { 2025-12-30T10:26:02,633 | ^ 2025-12-30T10:26:02,637 src/ViennaRNA/2Dpfold.c:587:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,638 587 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,639 | ^~ 2025-12-30T10:26:02,639 src/ViennaRNA/2Dpfold.c:587:60: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,640 587 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,640 | ^~ 2025-12-30T10:26:02,645 src/ViennaRNA/2Dpfold.c:670:45: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,646 670 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-30T10:26:02,646 | ^~ 2025-12-30T10:26:02,647 src/ViennaRNA/2Dpfold.c:670:78: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,647 670 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-30T10:26:02,648 | ^~ 2025-12-30T10:26:02,651 src/ViennaRNA/2Dpfold.c:800:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,652 800 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,652 | ^~ 2025-12-30T10:26:02,653 src/ViennaRNA/2Dpfold.c:800:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,654 800 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,654 | ^~ 2025-12-30T10:26:02,656 src/ViennaRNA/2Dpfold.c:832:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,657 832 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,657 | ^~ 2025-12-30T10:26:02,658 src/ViennaRNA/2Dpfold.c:832:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,659 832 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,659 | ^~ 2025-12-30T10:26:02,664 src/ViennaRNA/2Dpfold.c:956:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,665 956 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,665 | ^~ 2025-12-30T10:26:02,666 src/ViennaRNA/2Dpfold.c:956:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,667 956 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,667 | ^~ 2025-12-30T10:26:02,670 src/ViennaRNA/2Dpfold.c:995:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,671 995 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-30T10:26:02,671 | ^~ 2025-12-30T10:26:02,672 src/ViennaRNA/2Dpfold.c:995:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,673 995 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-30T10:26:02,674 | ^~ 2025-12-30T10:26:02,678 src/ViennaRNA/2Dpfold.c:1125:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,679 1125 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,679 | ^~ 2025-12-30T10:26:02,680 src/ViennaRNA/2Dpfold.c:1125:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,681 1125 | if (((cnt1 + da) <= maxD1) && ((cnt2 + db) <= maxD2)) { 2025-12-30T10:26:02,682 | ^~ 2025-12-30T10:26:02,686 src/ViennaRNA/2Dpfold.c:1207:41: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,687 1207 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-30T10:26:02,687 | ^~ 2025-12-30T10:26:02,689 src/ViennaRNA/2Dpfold.c:1207:74: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,689 1207 | if (((cnt1 + cnt3 + da) <= maxD1) && ((cnt2 + cnt4 + db) <= maxD2)) { 2025-12-30T10:26:02,690 | ^~ 2025-12-30T10:26:02,699 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_circ’: 2025-12-30T10:26:02,701 src/ViennaRNA/2Dpfold.c:1636:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,701 1636 | if (u < turn) 2025-12-30T10:26:02,702 | ^ 2025-12-30T10:26:02,713 src/ViennaRNA/2Dpfold.c:1854:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,713 1854 | if (seq_length > 2 * turn - 3) { 2025-12-30T10:26:02,714 | ^ 2025-12-30T10:26:02,728 src/ViennaRNA/2Dpfold.c: In function ‘vrna_pbacktrack5_TwoD’: 2025-12-30T10:26:02,730 src/ViennaRNA/2Dpfold.c:2312:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,731 2312 | if ((d1 == referenceBPs1[sn]) 2025-12-30T10:26:02,731 | ^~ 2025-12-30T10:26:02,732 src/ViennaRNA/2Dpfold.c:2313:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,733 2313 | && (d2 == referenceBPs2[sn])) { 2025-12-30T10:26:02,733 | ^~ 2025-12-30T10:26:02,735 src/ViennaRNA/2Dpfold.c:2324:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,736 2324 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:02,736 | ^~ 2025-12-30T10:26:02,737 src/ViennaRNA/2Dpfold.c:2324:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,738 2324 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:02,738 | ^~ 2025-12-30T10:26:02,740 src/ViennaRNA/2Dpfold.c:2326:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,740 2326 | (d1 - da >= k_min_Q[my_iindx[i + 1] - length]) 2025-12-30T10:26:02,741 | ^~ 2025-12-30T10:26:02,742 src/ViennaRNA/2Dpfold.c:2327:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,743 2327 | && (d1 - da <= k_max_Q[my_iindx[i + 1] - length])) { 2025-12-30T10:26:02,743 | ^~ 2025-12-30T10:26:02,744 src/ViennaRNA/2Dpfold.c:2329:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,745 2329 | (d2 - db >= l_min_Q[my_iindx[i + 1] - length][d1 - da]) 2025-12-30T10:26:02,746 | ^~ 2025-12-30T10:26:02,747 src/ViennaRNA/2Dpfold.c:2330:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,747 2330 | && (d2 - db <= l_max_Q[my_iindx[i + 1] - length][d1 - da])) 2025-12-30T10:26:02,748 | ^~ 2025-12-30T10:26:02,751 src/ViennaRNA/2Dpfold.c:2358:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,751 2358 | if ((d1 >= da) 2025-12-30T10:26:02,752 | ^~ 2025-12-30T10:26:02,753 src/ViennaRNA/2Dpfold.c:2359:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,754 2359 | && (d2 >= db) 2025-12-30T10:26:02,754 | ^~ 2025-12-30T10:26:02,756 In file included from src/ViennaRNA/2Dpfold.c:18: 2025-12-30T10:26:02,756 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,757 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,758 | ^ 2025-12-30T10:26:02,758 src/ViennaRNA/2Dpfold.c:2363:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,759 2363 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2025-12-30T10:26:02,760 | ^~~~ 2025-12-30T10:26:02,760 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:02,760 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,761 | ^~~ 2025-12-30T10:26:02,761 src/ViennaRNA/2Dpfold.c:2363:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,762 2363 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2025-12-30T10:26:02,762 | ^~~~ 2025-12-30T10:26:02,762 src/ViennaRNA/2Dpfold.c:2363:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,763 2363 | cnt1 <= MIN2(k_max_Q_B[ij], d1 - da); 2025-12-30T10:26:02,763 | ^~ 2025-12-30T10:26:02,764 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,764 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,765 | ^ 2025-12-30T10:26:02,765 src/ViennaRNA/2Dpfold.c:2366:28: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,765 2366 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2025-12-30T10:26:02,766 | ^~~~ 2025-12-30T10:26:02,766 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:02,767 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,767 | ^~~ 2025-12-30T10:26:02,768 src/ViennaRNA/2Dpfold.c:2366:28: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,768 2366 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2025-12-30T10:26:02,769 | ^~~~ 2025-12-30T10:26:02,769 src/ViennaRNA/2Dpfold.c:2366:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,770 2366 | cnt2 <= MIN2(l_max_Q_B[ij][cnt1], d2 - db); 2025-12-30T10:26:02,771 | ^~ 2025-12-30T10:26:02,771 src/ViennaRNA/2Dpfold.c:2368:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,772 2368 | if ((d1 - da - cnt1 >= k_min_Q[my_iindx[j + 1] - length]) 2025-12-30T10:26:02,773 | ^~ 2025-12-30T10:26:02,774 src/ViennaRNA/2Dpfold.c:2369:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,774 2369 | && (d1 - da - cnt1 <= k_max_Q[my_iindx[j + 1] - length])) { 2025-12-30T10:26:02,775 | ^~ 2025-12-30T10:26:02,776 src/ViennaRNA/2Dpfold.c:2370:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,777 2370 | if ((d2 - db - cnt2 >= l_min_Q[my_iindx[j + 1] - length][d1 - da - cnt1]) 2025-12-30T10:26:02,777 | ^~ 2025-12-30T10:26:02,778 src/ViennaRNA/2Dpfold.c:2371:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,779 2371 | && (d2 - db - cnt2 <= l_max_Q[my_iindx[j + 1] - length][d1 - da - cnt1])) { 2025-12-30T10:26:02,780 | ^~ 2025-12-30T10:26:02,782 src/ViennaRNA/2Dpfold.c:2395:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,782 2395 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:02,783 | ^~ 2025-12-30T10:26:02,784 src/ViennaRNA/2Dpfold.c:2395:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,785 2395 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:02,785 | ^~ 2025-12-30T10:26:02,788 src/ViennaRNA/2Dpfold.c: In function ‘pbacktrack_circ’: 2025-12-30T10:26:02,791 src/ViennaRNA/2Dpfold.c:2559:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,791 2559 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2025-12-30T10:26:02,792 | ^~ 2025-12-30T10:26:02,793 src/ViennaRNA/2Dpfold.c:2559:83: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,794 2559 | if ((referenceBPs1[my_iindx[1] - n] == d1) && (referenceBPs2[my_iindx[1] - n] == d2)) { 2025-12-30T10:26:02,794 | ^~ 2025-12-30T10:26:02,801 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcH’: 2025-12-30T10:26:02,803 src/ViennaRNA/2Dpfold.c:2763:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,804 2763 | if (((cnt1 + da) == d1) 2025-12-30T10:26:02,805 | ^~ 2025-12-30T10:26:02,806 src/ViennaRNA/2Dpfold.c:2764:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,807 2764 | && ((cnt2 + db) == d2)) { 2025-12-30T10:26:02,807 | ^~ 2025-12-30T10:26:02,821 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcI’: 2025-12-30T10:26:02,823 src/ViennaRNA/2Dpfold.c:3042:45: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,824 3042 | if (((cnt1 + cnt3 + da) == d1) 2025-12-30T10:26:02,825 | ^~ 2025-12-30T10:26:02,826 src/ViennaRNA/2Dpfold.c:3043:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,827 3043 | && ((cnt2 + cnt4 + db) == d2)) { 2025-12-30T10:26:02,828 | ^~ 2025-12-30T10:26:02,831 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qcM’: 2025-12-30T10:26:02,834 src/ViennaRNA/2Dpfold.c:3228:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,835 3228 | if (((cnt1 + cnt3 + da) == d1) 2025-12-30T10:26:02,835 | ^~ 2025-12-30T10:26:02,837 src/ViennaRNA/2Dpfold.c:3229:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,838 3229 | && ((cnt2 + cnt4 + db) == d2)) { 2025-12-30T10:26:02,838 | ^~ 2025-12-30T10:26:02,845 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm2’: 2025-12-30T10:26:02,848 src/ViennaRNA/2Dpfold.c:3400:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,848 3400 | if (((cnt1 + cnt3 + da) == d1) 2025-12-30T10:26:02,849 | ^~ 2025-12-30T10:26:02,851 src/ViennaRNA/2Dpfold.c:3401:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,851 3401 | && ((cnt2 + cnt4 + db) == d2)) { 2025-12-30T10:26:02,852 | ^~ 2025-12-30T10:26:02,860 src/ViennaRNA/2Dpfold.c: In function ‘backtrack’: 2025-12-30T10:26:02,863 src/ViennaRNA/2Dpfold.c:3599:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,864 3599 | if ((da == d1) && (db == d2)) 2025-12-30T10:26:02,864 | ^~ 2025-12-30T10:26:02,867 src/ViennaRNA/2Dpfold.c:3599:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,867 3599 | if ((da == d1) && (db == d2)) 2025-12-30T10:26:02,868 | ^~ 2025-12-30T10:26:02,874 src/ViennaRNA/2Dpfold.c:3634:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,874 3634 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:02,875 | ^~ 2025-12-30T10:26:02,878 src/ViennaRNA/2Dpfold.c:3634:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,878 3634 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:02,879 | ^~ 2025-12-30T10:26:02,881 src/ViennaRNA/2Dpfold.c:3635:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,882 3635 | if ((d1 - da >= k_min_Q_B[my_iindx[k] - l]) && 2025-12-30T10:26:02,882 | ^~ 2025-12-30T10:26:02,884 src/ViennaRNA/2Dpfold.c:3636:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,885 3636 | (d1 - da <= k_max_Q_B[my_iindx[k] - l])) { 2025-12-30T10:26:02,886 | ^~ 2025-12-30T10:26:02,888 src/ViennaRNA/2Dpfold.c:3637:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,888 3637 | if ((d2 - db >= l_min_Q_B[my_iindx[k] - l][d1 - da]) && 2025-12-30T10:26:02,889 | ^~ 2025-12-30T10:26:02,891 src/ViennaRNA/2Dpfold.c:3638:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,892 3638 | (d2 - db <= l_max_Q_B[my_iindx[k] - l][d1 - da])) { 2025-12-30T10:26:02,893 | ^~ 2025-12-30T10:26:02,903 src/ViennaRNA/2Dpfold.c:3810:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,903 3810 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-30T10:26:02,904 | ^~ 2025-12-30T10:26:02,906 src/ViennaRNA/2Dpfold.c:3810:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,907 3810 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-30T10:26:02,908 | ^~ 2025-12-30T10:26:02,910 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,911 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,912 | ^ 2025-12-30T10:26:02,912 src/ViennaRNA/2Dpfold.c:3811:54: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,913 3811 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:02,913 | ^~~~ 2025-12-30T10:26:02,915 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:02,915 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,916 | ^~~ 2025-12-30T10:26:02,916 src/ViennaRNA/2Dpfold.c:3811:54: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,916 3811 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:02,917 | ^~~~ 2025-12-30T10:26:02,919 src/ViennaRNA/2Dpfold.c:3811:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,919 3811 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:02,920 | ^~ 2025-12-30T10:26:02,923 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,923 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,924 | ^ 2025-12-30T10:26:02,924 src/ViennaRNA/2Dpfold.c:3813:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,925 3813 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:02,925 | ^~~~ 2025-12-30T10:26:02,927 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:02,927 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,928 | ^~~ 2025-12-30T10:26:02,928 src/ViennaRNA/2Dpfold.c:3813:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,929 3813 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:02,930 | ^~~~ 2025-12-30T10:26:02,931 src/ViennaRNA/2Dpfold.c:3813:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,932 3813 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:02,932 | ^~ 2025-12-30T10:26:02,935 src/ViennaRNA/2Dpfold.c:3814:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,935 3814 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2025-12-30T10:26:02,936 | ^~ 2025-12-30T10:26:02,940 src/ViennaRNA/2Dpfold.c:3814:77: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,940 3814 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) 2025-12-30T10:26:02,941 | ^~ 2025-12-30T10:26:02,943 src/ViennaRNA/2Dpfold.c:3815:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,944 3815 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2025-12-30T10:26:02,945 | ^~ 2025-12-30T10:26:02,947 src/ViennaRNA/2Dpfold.c:3816:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,948 3816 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) 2025-12-30T10:26:02,948 | ^~ 2025-12-30T10:26:02,952 src/ViennaRNA/2Dpfold.c:3827:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,952 3827 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-30T10:26:02,953 | ^~ 2025-12-30T10:26:02,956 src/ViennaRNA/2Dpfold.c:3827:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,956 3827 | if (d1 >= da && d2 >= db && Q_M[ii - k + 1] && Q_M1[jj + k]) { 2025-12-30T10:26:02,957 | ^~ 2025-12-30T10:26:02,960 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,961 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,961 | ^ 2025-12-30T10:26:02,962 src/ViennaRNA/2Dpfold.c:3828:54: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,962 3828 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:02,962 | ^~~~ 2025-12-30T10:26:02,965 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:02,965 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,966 | ^~~ 2025-12-30T10:26:02,966 src/ViennaRNA/2Dpfold.c:3828:54: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,967 3828 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:02,967 | ^~~~ 2025-12-30T10:26:02,970 src/ViennaRNA/2Dpfold.c:3828:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,970 3828 | for (cnt1 = k_min_Q_M[ii - k + 1]; cnt1 <= MIN2(k_max_Q_M[ii - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:02,971 | ^~ 2025-12-30T10:26:02,974 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,974 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,975 | ^ 2025-12-30T10:26:02,975 src/ViennaRNA/2Dpfold.c:3830:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,976 3830 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:02,976 | ^~~~ 2025-12-30T10:26:02,979 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:02,979 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:02,980 | ^~~ 2025-12-30T10:26:02,980 src/ViennaRNA/2Dpfold.c:3830:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:02,981 3830 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:02,981 | ^~~~ 2025-12-30T10:26:02,983 src/ViennaRNA/2Dpfold.c:3830:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:02,984 3830 | cnt2 <= MIN2(l_max_Q_M[ii - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:02,984 | ^~ 2025-12-30T10:26:02,987 src/ViennaRNA/2Dpfold.c:3831:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,988 3831 | if ((d1 - cnt1 - da >= k_min_Q_M1[jj + k]) && 2025-12-30T10:26:02,988 | ^~ 2025-12-30T10:26:02,991 src/ViennaRNA/2Dpfold.c:3832:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,991 3832 | (d1 - cnt1 - da <= k_max_Q_M1[jj + k])) { 2025-12-30T10:26:02,992 | ^~ 2025-12-30T10:26:02,994 src/ViennaRNA/2Dpfold.c:3833:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,995 3833 | if ((d2 - cnt2 - db >= l_min_Q_M1[jj + k][d1 - da - cnt1]) && 2025-12-30T10:26:02,995 | ^~ 2025-12-30T10:26:02,998 src/ViennaRNA/2Dpfold.c:3834:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:02,999 3834 | (d2 - cnt2 - db <= l_max_Q_M1[jj + k][d1 - cnt1 - da])) { 2025-12-30T10:26:02,999 | ^~ 2025-12-30T10:26:03,002 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm1’: 2025-12-30T10:26:03,005 src/ViennaRNA/2Dpfold.c:3965:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,006 3965 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:03,006 | ^~ 2025-12-30T10:26:03,009 src/ViennaRNA/2Dpfold.c:3965:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,010 3965 | if (d1 >= da && d2 >= db) { 2025-12-30T10:26:03,011 | ^~ 2025-12-30T10:26:03,013 src/ViennaRNA/2Dpfold.c:3966:24: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,014 3966 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2025-12-30T10:26:03,014 | ^~ 2025-12-30T10:26:03,017 src/ViennaRNA/2Dpfold.c:3966:58: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,018 3966 | if ((d1 - da >= k_min_Q_B[ii - l]) && (d1 - da <= k_max_Q_B[ii - l])) { 2025-12-30T10:26:03,018 | ^~ 2025-12-30T10:26:03,021 src/ViennaRNA/2Dpfold.c:3967:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,022 3967 | if ((d2 - db >= l_min_Q_B[ii - l][d1 - da]) && 2025-12-30T10:26:03,022 | ^~ 2025-12-30T10:26:03,025 src/ViennaRNA/2Dpfold.c:3968:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,026 3968 | (d2 - db <= l_max_Q_B[ii - l][d1 - da])) { 2025-12-30T10:26:03,026 | ^~ 2025-12-30T10:26:03,033 src/ViennaRNA/2Dpfold.c: In function ‘backtrack_qm’: 2025-12-30T10:26:03,037 src/ViennaRNA/2Dpfold.c:4186:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,037 4186 | if (d1 >= da2 && d2 >= db2) { 2025-12-30T10:26:03,038 | ^~ 2025-12-30T10:26:03,041 src/ViennaRNA/2Dpfold.c:4186:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,042 4186 | if (d1 >= da2 && d2 >= db2) { 2025-12-30T10:26:03,042 | ^~ 2025-12-30T10:26:03,045 src/ViennaRNA/2Dpfold.c:4187:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,046 4187 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2025-12-30T10:26:03,046 | ^~ 2025-12-30T10:26:03,049 src/ViennaRNA/2Dpfold.c:4187:69: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,050 4187 | if ((d1 - da2 >= k_min_Q_M1[jindx[j] + k]) && (d1 - da2 <= k_max_Q_M1[jindx[j] + k])) { 2025-12-30T10:26:03,050 | ^~ 2025-12-30T10:26:03,053 src/ViennaRNA/2Dpfold.c:4188:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,054 4188 | if ((d2 - db2 >= l_min_Q_M1[jindx[j] + k][d1 - da2]) && 2025-12-30T10:26:03,054 | ^~ 2025-12-30T10:26:03,057 src/ViennaRNA/2Dpfold.c:4189:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,058 4189 | (d2 - db2 <= l_max_Q_M1[jindx[j] + k][d1 - da2])) { 2025-12-30T10:26:03,059 | ^~ 2025-12-30T10:26:03,062 src/ViennaRNA/2Dpfold.c:4202:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,062 4202 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2025-12-30T10:26:03,063 | ^~ 2025-12-30T10:26:03,066 src/ViennaRNA/2Dpfold.c:4202:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,067 4202 | if (d1 >= da && d2 >= db && Q_M[my_iindx[i] - k + 1] && Q_M1[jindx[j] + k]) { 2025-12-30T10:26:03,067 | ^~ 2025-12-30T10:26:03,070 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,071 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:03,072 | ^ 2025-12-30T10:26:03,072 src/ViennaRNA/2Dpfold.c:4204:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:03,073 4204 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:03,073 | ^~~~ 2025-12-30T10:26:03,075 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:03,076 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:03,076 | ^~~ 2025-12-30T10:26:03,077 src/ViennaRNA/2Dpfold.c:4204:26: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:03,077 4204 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:03,078 | ^~~~ 2025-12-30T10:26:03,080 src/ViennaRNA/2Dpfold.c:4204:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,080 4204 | cnt1 <= MIN2(k_max_Q_M[my_iindx[i] - k + 1], d1 - da); cnt1++) 2025-12-30T10:26:03,081 | ^~ 2025-12-30T10:26:03,084 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,085 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:03,085 | ^ 2025-12-30T10:26:03,085 src/ViennaRNA/2Dpfold.c:4206:28: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:03,086 4206 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:03,086 | ^~~~ 2025-12-30T10:26:03,089 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:26:03,090 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:26:03,090 | ^~~ 2025-12-30T10:26:03,090 src/ViennaRNA/2Dpfold.c:4206:28: note: in expansion of macro ‘MIN2’ 2025-12-30T10:26:03,091 4206 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:03,091 | ^~~~ 2025-12-30T10:26:03,094 src/ViennaRNA/2Dpfold.c:4206:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,094 4206 | cnt2 <= MIN2(l_max_Q_M[my_iindx[i] - k + 1][cnt1], d2 - db); cnt2 += 2) 2025-12-30T10:26:03,095 | ^~ 2025-12-30T10:26:03,098 src/ViennaRNA/2Dpfold.c:4207:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,099 4207 | if ((d1 - da - cnt1 >= k_min_Q_M1[jindx[j] + k]) && 2025-12-30T10:26:03,099 | ^~ 2025-12-30T10:26:03,103 src/ViennaRNA/2Dpfold.c:4208:37: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,103 4208 | (d1 - da - cnt1 <= k_max_Q_M1[jindx[j] + k])) { 2025-12-30T10:26:03,104 | ^~ 2025-12-30T10:26:03,107 src/ViennaRNA/2Dpfold.c:4209:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,107 4209 | if ((d2 - db - cnt2 >= l_min_Q_M1[jindx[j] + k][d1 - da - cnt1]) && 2025-12-30T10:26:03,108 | ^~ 2025-12-30T10:26:03,111 src/ViennaRNA/2Dpfold.c:4210:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:26:03,112 4210 | (d2 - db - cnt2 <= l_max_Q_M1[jindx[j] + k][d1 - da - cnt1])) { 2025-12-30T10:26:03,113 | ^~ 2025-12-30T10:26:03,117 src/ViennaRNA/2Dpfold.c:4243:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,118 4243 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2025-12-30T10:26:03,118 | ^~ 2025-12-30T10:26:03,122 src/ViennaRNA/2Dpfold.c:4243:56: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:26:03,123 4243 | if (d1 == referenceBPs1[my_iindx[i] - k + 1] && d2 == referenceBPs2[my_iindx[i] - k + 1]) { 2025-12-30T10:26:03,123 | ^~ 2025-12-30T10:26:09,764 In function ‘updatePosteriorBoundaries’, 2025-12-30T10:26:09,764 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:591:21: 2025-12-30T10:26:09,766 src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:09,766 4392 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2025-12-30T10:26:09,767 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-30T10:26:09,767 src/ViennaRNA/2Dpfold.c:471:57: note: ‘l_max_post_b’ was declared here 2025-12-30T10:26:09,768 471 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2025-12-30T10:26:09,768 | ^~~~~~~~~~~~ 2025-12-30T10:26:09,769 In function ‘updatePosteriorBoundaries’, 2025-12-30T10:26:09,769 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:591:21: 2025-12-30T10:26:09,770 src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post_b’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:09,770 4391 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2025-12-30T10:26:09,771 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-30T10:26:09,771 src/ViennaRNA/2Dpfold.c:471:42: note: ‘l_min_post_b’ was declared here 2025-12-30T10:26:09,772 471 | int k_min_post_b, k_max_post_b, *l_min_post_b, *l_max_post_b; 2025-12-30T10:26:09,772 | ^~~~~~~~~~~~ 2025-12-30T10:26:09,772 In function ‘updatePosteriorBoundaries’, 2025-12-30T10:26:09,773 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1214:21: 2025-12-30T10:26:09,773 src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:09,774 4392 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2025-12-30T10:26:09,774 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-30T10:26:09,775 src/ViennaRNA/2Dpfold.c:1045:49: note: ‘l_max_post’ was declared here 2025-12-30T10:26:09,776 1045 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2025-12-30T10:26:09,776 | ^~~~~~~~~~ 2025-12-30T10:26:09,777 In function ‘updatePosteriorBoundaries’, 2025-12-30T10:26:09,777 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:1214:21: 2025-12-30T10:26:09,778 src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:09,779 4391 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2025-12-30T10:26:09,779 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-30T10:26:09,780 src/ViennaRNA/2Dpfold.c:1045:36: note: ‘l_min_post’ was declared here 2025-12-30T10:26:09,780 1045 | int k_min_post, k_max_post, *l_min_post, *l_max_post; 2025-12-30T10:26:09,781 | ^~~~~~~~~~ 2025-12-30T10:26:09,781 In function ‘updatePosteriorBoundaries’, 2025-12-30T10:26:09,782 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:962:17: 2025-12-30T10:26:09,783 src/ViennaRNA/2Dpfold.c:4392:17: warning: ‘l_max_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:09,783 4392 | (*max_l)[d1] = MAX2((*max_l)[d1], d2); 2025-12-30T10:26:09,784 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-30T10:26:09,785 src/ViennaRNA/2Dpfold.c:715:55: note: ‘l_max_post_m’ was declared here 2025-12-30T10:26:09,786 715 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2025-12-30T10:26:09,786 | ^~~~~~~~~~~~ 2025-12-30T10:26:09,787 In function ‘updatePosteriorBoundaries’, 2025-12-30T10:26:09,788 inlined from ‘pf2D_linear._omp_fn.0’ at src/ViennaRNA/2Dpfold.c:962:17: 2025-12-30T10:26:09,789 src/ViennaRNA/2Dpfold.c:4391:17: warning: ‘l_min_post_m’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:09,790 4391 | (*min_l)[d1] = MIN2((*min_l)[d1], d2); 2025-12-30T10:26:09,790 src/ViennaRNA/2Dpfold.c: In function ‘pf2D_linear._omp_fn.0’: 2025-12-30T10:26:09,791 src/ViennaRNA/2Dpfold.c:715:40: note: ‘l_min_post_m’ was declared here 2025-12-30T10:26:09,792 715 | int k_min_post_m, k_max_post_m, *l_min_post_m, *l_max_post_m; 2025-12-30T10:26:09,792 | ^~~~~~~~~~~~ 2025-12-30T10:26:13,636 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileAln.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileAln.o -fopenmp 2025-12-30T10:26:14,465 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/ProfileDist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ProfileDist.o -fopenmp 2025-12-30T10:26:14,787 src/ViennaRNA/ProfileDist.c: In function ‘PrfEditCost’: 2025-12-30T10:26:14,788 src/ViennaRNA/ProfileDist.c:181:11: warning: ‘dist’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:14,788 181 | double dist; 2025-12-30T10:26:14,789 | ^~~~ 2025-12-30T10:26:15,149 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/RNAstruct.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/RNAstruct.o -fopenmp 2025-12-30T10:26:15,302 src/ViennaRNA/RNAstruct.c: In function ‘b2Shapiro’: 2025-12-30T10:26:15,303 src/ViennaRNA/RNAstruct.c:306:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:15,303 306 | for (k = 0; k < strlen(tt); k++) 2025-12-30T10:26:15,304 | ^ 2025-12-30T10:26:15,305 src/ViennaRNA/RNAstruct.c:309:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:15,305 309 | for (k = 0; k < strlen(tt); k++) 2025-12-30T10:26:15,306 | ^ 2025-12-30T10:26:15,307 src/ViennaRNA/RNAstruct.c: In function ‘expand_Shapiro’: 2025-12-30T10:26:15,307 src/ViennaRNA/RNAstruct.c:449:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:15,308 449 | while (i < strlen(structure) - 1) { 2025-12-30T10:26:15,308 | ^ 2025-12-30T10:26:15,310 src/ViennaRNA/RNAstruct.c: In function ‘unexpand_aligned_F’: 2025-12-30T10:26:15,310 src/ViennaRNA/RNAstruct.c:603:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:15,311 603 | for (i = 0, l = 0; i < strlen(align[0]); i++) { 2025-12-30T10:26:15,312 | ^ 2025-12-30T10:26:16,113 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/ali_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/ali_plex.o -fopenmp 2025-12-30T10:26:16,374 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2025-12-30T10:26:16,375 src/ViennaRNA/ali_plex.c:244:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:16,375 244 | if (strlen(s1[s]) != n3) { 2025-12-30T10:26:16,376 | ^~ 2025-12-30T10:26:16,377 src/ViennaRNA/ali_plex.c:251:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:16,377 251 | if (strlen(s2[s]) != n4) { 2025-12-30T10:26:16,378 | ^~ 2025-12-30T10:26:16,384 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2025-12-30T10:26:16,384 src/ViennaRNA/ali_plex.c:540:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:16,385 540 | if (strlen(s1[s]) != n1) { 2025-12-30T10:26:16,386 | ^~ 2025-12-30T10:26:16,386 src/ViennaRNA/ali_plex.c:549:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:16,387 549 | if (strlen(s2[s]) != n2) { 2025-12-30T10:26:16,387 | ^~ 2025-12-30T10:26:17,921 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold_XS’: 2025-12-30T10:26:17,922 src/ViennaRNA/ali_plex.c:1099:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:17,923 1099 | if (strlen(s1[s]) != n3) { 2025-12-30T10:26:17,923 | ^~ 2025-12-30T10:26:17,924 src/ViennaRNA/ali_plex.c:1105:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:17,924 1105 | if (strlen(s2[s]) != n4) { 2025-12-30T10:26:17,925 | ^~ 2025-12-30T10:26:17,939 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-30T10:26:17,940 src/ViennaRNA/ali_plex.c:1436:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:17,941 1436 | if (strlen(s1[s]) != n1) 2025-12-30T10:26:17,941 | ^~ 2025-12-30T10:26:17,942 src/ViennaRNA/ali_plex.c:1439:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:26:17,942 1439 | if (strlen(s2[s]) != n2) 2025-12-30T10:26:17,943 | ^~ 2025-12-30T10:26:20,501 In function ‘alibacktrack’, 2025-12-30T10:26:20,502 inlined from ‘aliduplexfold’ at src/ViennaRNA/ali_plex.c:316:5: 2025-12-30T10:26:20,503 src/ViennaRNA/ali_plex.c:436:9: warning: ‘struc’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:20,504 436 | free(struc); 2025-12-30T10:26:20,504 | ^~~~~~~~~~~ 2025-12-30T10:26:20,505 src/ViennaRNA/ali_plex.c: In function ‘aliduplexfold’: 2025-12-30T10:26:20,506 src/ViennaRNA/ali_plex.c:366:22: note: ‘struc’ was declared here 2025-12-30T10:26:20,506 366 | char *st1, *st2, *struc; 2025-12-30T10:26:20,507 | ^~~~~ 2025-12-30T10:26:22,058 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2025-12-30T10:26:22,059 src/ViennaRNA/ali_plex.c:1010:62: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:22,059 1010 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2025-12-30T10:26:22,060 | ^ 2025-12-30T10:26:22,061 src/ViennaRNA/ali_plex.c:497:9: note: ‘max_pos_j’ was declared here 2025-12-30T10:26:22,061 497 | int max_pos_j; 2025-12-30T10:26:22,062 | ^~~~~~~~~ 2025-12-30T10:26:22,062 src/ViennaRNA/ali_plex.c:1007:57: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:22,063 1007 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2025-12-30T10:26:22,064 | ^ 2025-12-30T10:26:22,064 src/ViennaRNA/ali_plex.c:496:9: note: ‘max_pos’ was declared here 2025-12-30T10:26:22,065 496 | int max_pos; /* get position of the best hit */ 2025-12-30T10:26:22,066 | ^~~~~~~ 2025-12-30T10:26:22,066 src/ViennaRNA/ali_plex.c:847:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:22,067 847 | position_j[i + delta] = min_j_colonne; 2025-12-30T10:26:22,067 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-30T10:26:22,068 src/ViennaRNA/ali_plex.c:499:9: note: ‘min_j_colonne’ was declared here 2025-12-30T10:26:22,069 499 | int min_j_colonne; 2025-12-30T10:26:22,069 | ^~~~~~~~~~~~~ 2025-12-30T10:26:22,070 In function ‘update_dfold_params’, 2025-12-30T10:26:22,071 inlined from ‘aliLduplexfold’ at src/ViennaRNA/ali_plex.c:531:7: 2025-12-30T10:26:22,071 src/ViennaRNA/ali_plex.c:2005:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-30T10:26:22,072 2005 | free(P); 2025-12-30T10:26:22,073 | ^~~~~~~ 2025-12-30T10:26:22,073 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold’: 2025-12-30T10:26:22,074 src/ViennaRNA/ali_plex.c:530:7: note: call to ‘free’ here 2025-12-30T10:26:22,075 530 | free(P); 2025-12-30T10:26:22,076 | ^~~~~~~ 2025-12-30T10:26:23,358 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-30T10:26:23,359 src/ViennaRNA/ali_plex.c:1907:64: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:23,359 1907 | int end_q = MIN2(n2 - 10, max_pos_j + alignment_length - 1); 2025-12-30T10:26:23,360 | ^ 2025-12-30T10:26:23,360 src/ViennaRNA/ali_plex.c:1369:9: note: ‘max_pos_j’ was declared here 2025-12-30T10:26:23,361 1369 | int max_pos_j; 2025-12-30T10:26:23,361 | ^~~~~~~~~ 2025-12-30T10:26:23,362 In function ‘aliplot_max_XS’, 2025-12-30T10:26:23,362 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1748:3: 2025-12-30T10:26:23,363 src/ViennaRNA/ali_plex.c:1901:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:23,363 1901 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", 2025-12-30T10:26:23,364 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:23,365 1902 | max_pos - 10, max_pos_j - 10, (double)((double)max) / (100 * n_seq)); 2025-12-30T10:26:23,365 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:23,366 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-30T10:26:23,367 src/ViennaRNA/ali_plex.c:1368:9: note: ‘max_pos’ was declared here 2025-12-30T10:26:23,367 1368 | int max_pos; /* get position of the best hit */ 2025-12-30T10:26:23,368 | ^~~~~~~ 2025-12-30T10:26:23,368 src/ViennaRNA/ali_plex.c:1725:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:23,369 1725 | position_j[i + delta] = min_j_colonne; 2025-12-30T10:26:23,370 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-30T10:26:23,370 src/ViennaRNA/ali_plex.c:1371:9: note: ‘min_j_colonne’ was declared here 2025-12-30T10:26:23,371 1371 | int min_j_colonne; 2025-12-30T10:26:23,371 | ^~~~~~~~~~~~~ 2025-12-30T10:26:23,372 In function ‘update_dfold_params’, 2025-12-30T10:26:23,372 inlined from ‘aliLduplexfold_XS’ at src/ViennaRNA/ali_plex.c:1404:7: 2025-12-30T10:26:23,373 src/ViennaRNA/ali_plex.c:2005:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-30T10:26:23,373 2005 | free(P); 2025-12-30T10:26:23,373 | ^~~~~~~ 2025-12-30T10:26:23,374 src/ViennaRNA/ali_plex.c: In function ‘aliLduplexfold_XS’: 2025-12-30T10:26:23,374 src/ViennaRNA/ali_plex.c:1403:7: note: call to ‘free’ here 2025-12-30T10:26:23,375 1403 | free(P); 2025-12-30T10:26:23,376 | ^~~~~~~ 2025-12-30T10:26:24,487 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_exterior.o -fopenmp 2025-12-30T10:26:24,721 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_exterior_f3.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_exterior_f3.o -fopenmp 2025-12-30T10:26:26,327 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_exterior_f5.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_exterior_f5.o -fopenmp 2025-12-30T10:26:27,440 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_gquad.o -fopenmp 2025-12-30T10:26:28,810 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_hairpin.o -fopenmp 2025-12-30T10:26:29,194 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_internal.o -fopenmp 2025-12-30T10:26:32,317 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/backtrack/bt_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/backtrack/bt_multibranch.o -fopenmp 2025-12-30T10:26:36,563 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/c_plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/c_plex.o -fopenmp 2025-12-30T10:26:36,835 src/ViennaRNA/c_plex.c: In function ‘duplexfold_CXS’: 2025-12-30T10:26:36,835 src/ViennaRNA/c_plex.c:368:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:26:36,836 368 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2025-12-30T10:26:36,837 | ^~~~~~~ 2025-12-30T10:26:36,859 src/ViennaRNA/c_plex.c: In function ‘find_max_CXS’: 2025-12-30T10:26:36,860 src/ViennaRNA/c_plex.c:960:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:36,861 960 | if (dL <= strlen(test.structure) - l1 - 1) { 2025-12-30T10:26:36,862 | ^~ 2025-12-30T10:26:36,862 src/ViennaRNA/c_plex.c: In function ‘plot_max_CXS’: 2025-12-30T10:26:36,863 src/ViennaRNA/c_plex.c:1011:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:36,864 1011 | if (dL <= strlen(test.structure) - l1 - 1) 2025-12-30T10:26:36,864 | ^~ 2025-12-30T10:26:36,870 src/ViennaRNA/c_plex.c: In function ‘duplexfold_C’: 2025-12-30T10:26:36,870 src/ViennaRNA/c_plex.c:1032:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:26:36,871 1032 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-30T10:26:36,872 | ^~ 2025-12-30T10:26:36,897 src/ViennaRNA/c_plex.c: In function ‘find_max_C’: 2025-12-30T10:26:36,898 src/ViennaRNA/c_plex.c:1662:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:36,899 1662 | if (dL <= strlen(test.structure) - l1 - 1) { 2025-12-30T10:26:36,899 | ^~ 2025-12-30T10:26:36,900 src/ViennaRNA/c_plex.c: In function ‘plot_max_C’: 2025-12-30T10:26:36,902 src/ViennaRNA/c_plex.c:1716:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:26:36,902 1716 | if (dL <= strlen(test.structure) - l1 - 1) { 2025-12-30T10:26:36,903 | ^~ 2025-12-30T10:26:39,259 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2025-12-30T10:26:39,260 src/ViennaRNA/c_plex.c:996:73: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:39,261 996 | int end_q = MIN2(n2 - 9, max_pos_j + alignment_length - 2); 2025-12-30T10:26:39,261 | ^ 2025-12-30T10:26:39,262 src/ViennaRNA/c_plex.c:543:13: note: ‘max_pos_j’ was declared here 2025-12-30T10:26:39,262 543 | int max_pos_j; 2025-12-30T10:26:39,263 | ^~~~~~~~~ 2025-12-30T10:26:39,263 In function ‘plot_max_CXS’, 2025-12-30T10:26:39,264 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:843:5: 2025-12-30T10:26:39,264 src/ViennaRNA/c_plex.c:990:5: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:39,265 990 | printf("target upper bound %d: query lower bound %d (%5.2f)\n", max_pos - 3, max_pos_j, 2025-12-30T10:26:39,266 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:39,266 991 | ((double)max) / 100); 2025-12-30T10:26:39,267 | ~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:39,267 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2025-12-30T10:26:39,268 src/ViennaRNA/c_plex.c:542:13: note: ‘max_pos’ was declared here 2025-12-30T10:26:39,269 542 | int max_pos; /* get position of the best hit */ 2025-12-30T10:26:39,270 | ^~~~~~~ 2025-12-30T10:26:39,270 src/ViennaRNA/c_plex.c:819:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:39,271 819 | position_j[i + delta] = min_j_colonne; 2025-12-30T10:26:39,272 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-30T10:26:39,273 src/ViennaRNA/c_plex.c:545:13: note: ‘min_j_colonne’ was declared here 2025-12-30T10:26:39,274 545 | int min_j_colonne; 2025-12-30T10:26:39,274 | ^~~~~~~~~~~~~ 2025-12-30T10:26:39,275 In function ‘update_dfold_params’, 2025-12-30T10:26:39,276 inlined from ‘Lduplexfold_CXS’ at src/ViennaRNA/c_plex.c:580:7: 2025-12-30T10:26:39,276 src/ViennaRNA/c_plex.c:1736:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-30T10:26:39,277 1736 | free(P); 2025-12-30T10:26:39,278 | ^~~~~~~ 2025-12-30T10:26:39,278 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_CXS’: 2025-12-30T10:26:39,279 src/ViennaRNA/c_plex.c:579:7: note: call to ‘free’ here 2025-12-30T10:26:39,280 579 | free(P); 2025-12-30T10:26:39,281 | ^~~~~~~ 2025-12-30T10:26:40,664 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2025-12-30T10:26:40,666 src/ViennaRNA/c_plex.c:1699:69: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:26:40,666 1699 | int begin_t = MAX2(11, max_pos - alignment_length + 1); 2025-12-30T10:26:40,667 | ^ 2025-12-30T10:26:40,667 src/ViennaRNA/c_plex.c:1296:7: note: ‘max_pos’ was declared here 2025-12-30T10:26:40,668 1296 | int max_pos; /* get position of the best hit */ 2025-12-30T10:26:40,669 | ^~~~~~~ 2025-12-30T10:26:40,670 In function ‘update_dfold_params’, 2025-12-30T10:26:40,670 inlined from ‘Lduplexfold_C’ at src/ViennaRNA/c_plex.c:1350:7: 2025-12-30T10:26:40,671 src/ViennaRNA/c_plex.c:1736:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-30T10:26:40,671 1736 | free(P); 2025-12-30T10:26:40,672 | ^~~~~~~ 2025-12-30T10:26:40,673 src/ViennaRNA/c_plex.c: In function ‘Lduplexfold_C’: 2025-12-30T10:26:40,674 src/ViennaRNA/c_plex.c:1349:7: note: call to ‘free’ here 2025-12-30T10:26:40,674 1349 | free(P); 2025-12-30T10:26:40,675 | ^~~~~~~ 2025-12-30T10:26:41,664 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/combinatorics/combinatorics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/combinatorics/combinatorics.o -fopenmp 2025-12-30T10:26:42,465 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/concentrations.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/concentrations.o -fopenmp 2025-12-30T10:26:42,856 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/constraints.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/constraints.o -fopenmp 2025-12-30T10:26:43,159 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/hard.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/hard.o -fopenmp 2025-12-30T10:26:43,401 In file included from src/ViennaRNA/constraints/hard.c:43: 2025-12-30T10:26:43,402 src/ViennaRNA/constraints/wrap_internal_hc.inc: In function ‘hc_int_cb_sn’: 2025-12-30T10:26:43,403 src/ViennaRNA/constraints/wrap_internal_hc.inc:84:25: warning: unused variable ‘u3’ [-Wunused-variable] 2025-12-30T10:26:43,403 84 | unsigned int u1, u2, u3; 2025-12-30T10:26:43,404 | ^~ 2025-12-30T10:26:43,405 src/ViennaRNA/constraints/wrap_internal_hc.inc:84:21: warning: unused variable ‘u2’ [-Wunused-variable] 2025-12-30T10:26:43,405 84 | unsigned int u1, u2, u3; 2025-12-30T10:26:43,406 | ^~ 2025-12-30T10:26:43,406 src/ViennaRNA/constraints/wrap_internal_hc.inc:84:17: warning: unused variable ‘u1’ [-Wunused-variable] 2025-12-30T10:26:43,407 84 | unsigned int u1, u2, u3; 2025-12-30T10:26:43,408 | ^~ 2025-12-30T10:26:43,408 src/ViennaRNA/constraints/wrap_internal_hc.inc:83:22: warning: unused variable ‘pkl’ [-Wunused-variable] 2025-12-30T10:26:43,409 83 | unsigned char pij, pkl; 2025-12-30T10:26:43,410 | ^~~ 2025-12-30T10:26:43,410 src/ViennaRNA/constraints/wrap_internal_hc.inc:83:17: warning: unused variable ‘pij’ [-Wunused-variable] 2025-12-30T10:26:43,411 83 | unsigned char pij, pkl; 2025-12-30T10:26:43,412 | ^~~ 2025-12-30T10:26:43,412 src/ViennaRNA/constraints/wrap_internal_hc.inc: In function ‘wrap_hc_int_cb_window’: 2025-12-30T10:26:43,413 src/ViennaRNA/constraints/wrap_internal_hc.inc:102:25: warning: unused variable ‘u3’ [-Wunused-variable] 2025-12-30T10:26:43,414 102 | unsigned int u1, u2, u3; 2025-12-30T10:26:43,415 | ^~ 2025-12-30T10:26:43,481 In file included from src/ViennaRNA/constraints/hard.c:42: 2025-12-30T10:26:43,482 src/ViennaRNA/constraints/wrap_hairpin_hc.inc: At top level: 2025-12-30T10:26:43,483 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:4:1: warning: ‘wrap_hc_hp_cb_def’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:26:43,483 4 | wrap_hc_hp_cb_def(int i, 2025-12-30T10:26:43,484 | ^~~~~~~~~~~~~~~~~ 2025-12-30T10:26:43,484 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:10:1: warning: ‘wrap_hc_hp_cb_def_window’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:26:43,485 10 | wrap_hc_hp_cb_def_window(int i, 2025-12-30T10:26:43,485 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:43,486 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:16:1: warning: ‘wrap_hc_hp_cb_def_user’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:26:43,486 16 | wrap_hc_hp_cb_def_user(int i, 2025-12-30T10:26:43,487 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:43,488 src/ViennaRNA/constraints/wrap_hairpin_hc.inc:22:1: warning: ‘wrap_hc_hp_cb_def_user_window’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:26:43,488 22 | wrap_hc_hp_cb_def_user_window(int i, 2025-12-30T10:26:43,489 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:43,489 src/ViennaRNA/constraints/wrap_internal_hc.inc:2:1: warning: ‘hc_int_cb_def’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:26:43,490 2 | hc_int_cb_def(int i, 2025-12-30T10:26:43,490 | ^~~~~~~~~~~~~ 2025-12-30T10:26:43,491 src/ViennaRNA/constraints/wrap_internal_hc.inc:10:1: warning: ‘hc_int_cb_def_user’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:26:43,492 10 | hc_int_cb_def_user(int i, 2025-12-30T10:26:43,492 | ^~~~~~~~~~~~~~~~~~ 2025-12-30T10:26:47,252 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/ligand.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/ligand.o -fopenmp 2025-12-30T10:26:48,238 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod.o -fopenmp 2025-12-30T10:26:48,437 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_stacks’: 2025-12-30T10:26:48,438 src/ViennaRNA/constraints/sc_cb_mod.c:761:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:26:48,439 761 | char nt[MAX_ALPHABET] = { 2025-12-30T10:26:48,439 | ^~ 2025-12-30T10:26:48,440 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_mismatches’: 2025-12-30T10:26:48,441 src/ViennaRNA/constraints/sc_cb_mod.c:858:17: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:26:48,442 858 | char bp[3] = { 2025-12-30T10:26:48,442 | ^~ 2025-12-30T10:26:48,443 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_dangles’: 2025-12-30T10:26:48,444 src/ViennaRNA/constraints/sc_cb_mod.c:963:17: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:26:48,445 963 | char bp[3] = { 2025-12-30T10:26:48,445 | ^~ 2025-12-30T10:26:48,446 src/ViennaRNA/constraints/sc_cb_mod.c: In function ‘init_terminal’: 2025-12-30T10:26:48,446 src/ViennaRNA/constraints/sc_cb_mod.c:1072:17: warning: variable ‘nt’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:26:48,447 1072 | char nt[MAX_ALPHABET] = { 2025-12-30T10:26:48,448 | ^~ 2025-12-30T10:26:50,827 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_parser.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_parser.o -fopenmp 2025-12-30T10:26:51,553 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/sc_cb_mod_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/sc_cb_mod_wrappers.o -fopenmp 2025-12-30T10:27:01,797 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft.o -fopenmp 2025-12-30T10:27:04,674 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/constraints/soft_cb_multi.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/constraints/soft_cb_multi.o -fopenmp 2025-12-30T10:27:05,607 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/data/transform.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/data/transform.o -fopenmp 2025-12-30T10:27:05,873 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/array.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/array.o -fopenmp 2025-12-30T10:27:06,064 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/basic_datastructures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/basic_datastructures.o -fopenmp 2025-12-30T10:27:06,400 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/char_stream.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/char_stream.o -fopenmp 2025-12-30T10:27:07,076 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/dp_matrices.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/dp_matrices.o -fopenmp 2025-12-30T10:27:08,982 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/hash_tables.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/hash_tables.o -fopenmp 2025-12-30T10:27:09,477 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/heap.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/heap.o -fopenmp 2025-12-30T10:27:09,985 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/lists.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/lists.o -fopenmp 2025-12-30T10:27:10,298 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/sparse_mx.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/sparse_mx.o -fopenmp 2025-12-30T10:27:11,172 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/stream_output.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/stream_output.o -fopenmp 2025-12-30T10:27:11,511 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/datastructures/string.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/datastructures/string.o -fopenmp 2025-12-30T10:27:11,799 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/dist_vars.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/dist_vars.o -fopenmp 2025-12-30T10:27:11,857 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/duplex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/duplex.o -fopenmp 2025-12-30T10:27:12,133 src/ViennaRNA/duplex.c: In function ‘aliduplexfold_cu’: 2025-12-30T10:27:12,133 src/ViennaRNA/duplex.c:460:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:27:12,134 460 | if (strlen(s1[s]) != n1) { 2025-12-30T10:27:12,135 | ^~ 2025-12-30T10:27:12,136 src/ViennaRNA/duplex.c:467:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:27:12,136 467 | if (strlen(s2[s]) != n2) { 2025-12-30T10:27:12,137 | ^~ 2025-12-30T10:27:12,139 src/ViennaRNA/duplex.c: In function ‘aliduplex_subopt’: 2025-12-30T10:27:12,140 src/ViennaRNA/duplex.c:589:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:27:12,141 589 | if (strlen(s1[s]) != n1) { 2025-12-30T10:27:12,141 | ^~ 2025-12-30T10:27:12,142 src/ViennaRNA/duplex.c:596:23: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:27:12,142 596 | if (strlen(s2[s]) != n2) { 2025-12-30T10:27:12,143 | ^~ 2025-12-30T10:27:14,452 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_covariance.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_covariance.o -fopenmp 2025-12-30T10:27:14,864 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_exterior.o -fopenmp 2025-12-30T10:27:15,422 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_gquad.o -fopenmp 2025-12-30T10:27:16,177 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_hairpin.o -fopenmp 2025-12-30T10:27:17,584 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_internal.o -fopenmp 2025-12-30T10:27:20,789 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_multibranch.o -fopenmp 2025-12-30T10:27:21,133 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_structures.o -fopenmp 2025-12-30T10:27:25,294 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/eval_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/eval_wrappers.o -fopenmp 2025-12-30T10:27:26,096 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_exterior.o -fopenmp 2025-12-30T10:27:26,433 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_hairpin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_hairpin.o -fopenmp 2025-12-30T10:27:27,821 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_internal.o -fopenmp 2025-12-30T10:27:30,814 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/eval/exp_eval_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/eval/exp_eval_multibranch.o -fopenmp 2025-12-30T10:27:31,103 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/fold_compound.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/fold_compound.o -fopenmp 2025-12-30T10:27:32,089 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/grammar/gr_extension_mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar/gr_extension_mfe.o -fopenmp 2025-12-30T10:27:32,451 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/grammar/gr_extension_pf.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar/gr_extension_pf.o -fopenmp 2025-12-30T10:27:32,812 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/grammar/grammar.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/grammar/grammar.o -fopenmp 2025-12-30T10:27:33,415 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/heat_capacity.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/heat_capacity.o -fopenmp 2025-12-30T10:27:33,783 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/inverse/inverse.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/inverse/inverse.o -fopenmp 2025-12-30T10:27:34,018 src/ViennaRNA/inverse/inverse.c: In function ‘adaptive_walk’: 2025-12-30T10:27:34,019 src/ViennaRNA/inverse/inverse.c:118:22: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:27:34,020 118 | if (strlen(target) != len) { 2025-12-30T10:27:34,021 | ^~ 2025-12-30T10:27:34,025 src/ViennaRNA/inverse/inverse.c: In function ‘make_ptable’: 2025-12-30T10:27:34,026 src/ViennaRNA/inverse/inverse.c:346:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:34,026 346 | for (i = 0; i < strlen(structure); i++) { 2025-12-30T10:27:34,027 | ^ 2025-12-30T10:27:34,027 src/ViennaRNA/inverse/inverse.c: In function ‘inverse_fold’: 2025-12-30T10:27:34,028 src/ViennaRNA/inverse/inverse.c:401:21: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:27:34,029 401 | if (strlen(start) != len) { 2025-12-30T10:27:34,029 | ^~ 2025-12-30T10:27:34,032 src/ViennaRNA/inverse/inverse.c: In function ‘make_start’: 2025-12-30T10:27:34,033 src/ViennaRNA/inverse/inverse.c:525:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:34,033 525 | for (i = 0; i < strlen(start); i++) 2025-12-30T10:27:34,034 | ^ 2025-12-30T10:27:34,034 src/ViennaRNA/inverse/inverse.c:527:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:34,035 527 | for (i = 0; i < strlen(symbolset); i++) 2025-12-30T10:27:34,036 | ^ 2025-12-30T10:27:34,920 src/ViennaRNA/inverse/inverse.c: In function ‘inverse_fold’: 2025-12-30T10:27:34,921 src/ViennaRNA/inverse/inverse.c:378:5: warning: ‘strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 2025-12-30T10:27:34,922 378 | strncpy(wstruct, structure + i, j - i + 1); \ 2025-12-30T10:27:34,923 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:27:34,923 src/ViennaRNA/inverse/inverse.c:434:7: note: in expansion of macro ‘WALK’ 2025-12-30T10:27:34,924 434 | WALK(0, len - 1); 2025-12-30T10:27:34,924 | ^~~~ 2025-12-30T10:27:34,925 src/ViennaRNA/inverse/inverse.c:400:9: note: length computed here 2025-12-30T10:27:34,925 400 | len = strlen(structure); 2025-12-30T10:27:34,926 | ^~~~~~~~~~~~~~~~~ 2025-12-30T10:27:35,166 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/commands.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/commands.o -fopenmp 2025-12-30T10:27:35,396 src/ViennaRNA/io/commands.c: In function ‘parse_constraints_line’: 2025-12-30T10:27:35,397 src/ViennaRNA/io/commands.c:818:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,397 818 | (sscanf(line + pos, "%15s%ln", &buf[0], &pp) == 1)) { 2025-12-30T10:27:35,398 | ~~^ ~~~ 2025-12-30T10:27:35,398 | | | 2025-12-30T10:27:35,399 | long int * size_t * {aka unsigned int *} 2025-12-30T10:27:35,399 | %n 2025-12-30T10:27:35,400 src/ViennaRNA/io/commands.c:822:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 5 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,400 822 | if (sscanf(buf, "%d-%d%ln", &v1, &v2, &pp) == 2) { 2025-12-30T10:27:35,401 | ~~^ ~~~ 2025-12-30T10:27:35,402 | | | 2025-12-30T10:27:35,402 | long int * size_t * {aka unsigned int *} 2025-12-30T10:27:35,403 | %n 2025-12-30T10:27:35,403 src/ViennaRNA/io/commands.c:830:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,404 830 | } else if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-30T10:27:35,404 | ~~^ ~~~ 2025-12-30T10:27:35,405 | | | 2025-12-30T10:27:35,406 | | size_t * {aka unsigned int *} 2025-12-30T10:27:35,406 | long int * 2025-12-30T10:27:35,407 | %n 2025-12-30T10:27:35,408 src/ViennaRNA/io/commands.c:840:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 5 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,408 840 | if (sscanf(buf, "%d-%d%ln", &v1, &v2, &pp) == 2) { 2025-12-30T10:27:35,409 | ~~^ ~~~ 2025-12-30T10:27:35,410 | | | 2025-12-30T10:27:35,411 | long int * size_t * {aka unsigned int *} 2025-12-30T10:27:35,412 | %n 2025-12-30T10:27:35,413 src/ViennaRNA/io/commands.c:851:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,414 851 | if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-30T10:27:35,415 | ~~^ ~~~ 2025-12-30T10:27:35,415 | | | 2025-12-30T10:27:35,416 | | size_t * {aka unsigned int *} 2025-12-30T10:27:35,416 | long int * 2025-12-30T10:27:35,417 | %n 2025-12-30T10:27:35,417 src/ViennaRNA/io/commands.c:857:37: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,418 857 | } else if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-30T10:27:35,418 | ~~^ ~~~ 2025-12-30T10:27:35,419 | | | 2025-12-30T10:27:35,419 | | size_t * {aka unsigned int *} 2025-12-30T10:27:35,420 | long int * 2025-12-30T10:27:35,420 | %n 2025-12-30T10:27:35,421 src/ViennaRNA/io/commands.c:869:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,421 869 | if (sscanf(buf, "%d%ln", &v1, &pp) == 1) { 2025-12-30T10:27:35,422 | ~~^ ~~~ 2025-12-30T10:27:35,422 | | | 2025-12-30T10:27:35,423 | | size_t * {aka unsigned int *} 2025-12-30T10:27:35,424 | long int * 2025-12-30T10:27:35,424 | %n 2025-12-30T10:27:35,425 src/ViennaRNA/io/commands.c:886:32: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,426 886 | if (sscanf(buf, "%g%ln", &energy, &pp) == 1) { 2025-12-30T10:27:35,427 | ~~^ ~~~ 2025-12-30T10:27:35,427 | | | 2025-12-30T10:27:35,428 | long int * size_t * {aka unsigned int *} 2025-12-30T10:27:35,429 | %n 2025-12-30T10:27:35,429 src/ViennaRNA/io/commands.c:894:33: warning: format ‘%ln’ expects argument of type ‘long int *’, but argument 4 has type ‘size_t *’ {aka ‘unsigned int *’} [-Wformat=] 2025-12-30T10:27:35,430 894 | if (sscanf(buf, "%8s%ln", &buf2[0], &pp) == 1) { 2025-12-30T10:27:35,430 | ~~^ ~~~ 2025-12-30T10:27:35,431 | | | 2025-12-30T10:27:35,432 | long int * size_t * {aka unsigned int *} 2025-12-30T10:27:35,432 | %n 2025-12-30T10:27:36,115 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats.o -fopenmp 2025-12-30T10:27:36,344 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect’: 2025-12-30T10:27:36,344 src/ViennaRNA/io/file_formats.c:202:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:36,345 202 | for (i = 0; i < strlen(seq) - 1; i++) { 2025-12-30T10:27:36,346 | ^ 2025-12-30T10:27:36,352 src/ViennaRNA/io/file_formats.c: In function ‘vrna_extract_record_rest_structure’: 2025-12-30T10:27:36,353 src/ViennaRNA/io/file_formats.c:600:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:36,354 600 | if ((length > 0) && (r - 1 == length)) 2025-12-30T10:27:36,354 | ^~ 2025-12-30T10:27:36,368 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2025-12-30T10:27:36,368 src/ViennaRNA/io/file_formats.c:974:29: warning: variable ‘tok4’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:27:36,369 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-30T10:27:36,370 | ^~~~ 2025-12-30T10:27:37,164 src/ViennaRNA/io/file_formats.c:1111:12: warning: ‘tok6’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:27:37,165 1111 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2025-12-30T10:27:37,165 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:27:37,166 src/ViennaRNA/io/file_formats.c:974:41: note: ‘tok6’ was declared here 2025-12-30T10:27:37,166 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-30T10:27:37,166 | ^~~~ 2025-12-30T10:27:37,167 src/ViennaRNA/io/file_formats.c:1111:12: warning: ‘tok5’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:27:37,167 1111 | if (!process_ct_nt_line(ct_entry, tok1, tok2, tok3, tok5, tok6)) 2025-12-30T10:27:37,168 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:27:37,168 src/ViennaRNA/io/file_formats.c:974:35: note: ‘tok5’ was declared here 2025-12-30T10:27:37,169 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-30T10:27:37,170 | ^~~~ 2025-12-30T10:27:37,170 In function ‘process_ct_nt_line’, 2025-12-30T10:27:37,171 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1111:12: 2025-12-30T10:27:37,171 src/ViennaRNA/io/file_formats.c:1291:22: warning: ‘tok3’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:27:37,172 1291 | (predecessor == 0)) { 2025-12-30T10:27:37,172 | ~~~~~~~~~~~~~^~~~~ 2025-12-30T10:27:37,173 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2025-12-30T10:27:37,173 src/ViennaRNA/io/file_formats.c:974:23: note: ‘tok3’ was declared here 2025-12-30T10:27:37,174 974 | long tok1, tok3, tok4, tok5, tok6; 2025-12-30T10:27:37,175 | ^~~~ 2025-12-30T10:27:37,176 In function ‘process_ct_nt_line’, 2025-12-30T10:27:37,176 inlined from ‘vrna_file_connect_read_record’ at src/ViennaRNA/io/file_formats.c:1111:12: 2025-12-30T10:27:37,177 src/ViennaRNA/io/file_formats.c:1297:43: warning: ‘tok2’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:27:37,177 1297 | data->sequence[data->sequence_pos++] = nucleotide; 2025-12-30T10:27:37,178 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:27:37,179 src/ViennaRNA/io/file_formats.c: In function ‘vrna_file_connect_read_record’: 2025-12-30T10:27:37,179 src/ViennaRNA/io/file_formats.c:971:33: note: ‘tok2’ was declared here 2025-12-30T10:27:37,180 971 | char c, *line, *end, tok2, **tok, **ptr; 2025-12-30T10:27:37,181 | ^~~~ 2025-12-30T10:27:37,418 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/file_formats_msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/file_formats_msa.o -fopenmp 2025-12-30T10:27:37,650 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_stockholm_alignment’: 2025-12-30T10:27:37,651 src/ViennaRNA/io/file_formats_msa.c:654:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:37,652 654 | for (i = 0; i < strlen(tmp_seq); i++) 2025-12-30T10:27:37,653 | ^ 2025-12-30T10:27:37,656 src/ViennaRNA/io/file_formats_msa.c: In function ‘parse_clustal_alignment’: 2025-12-30T10:27:37,657 src/ViennaRNA/io/file_formats_msa.c:903:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:37,658 903 | for (i = 0; i < strlen(seq); i++) 2025-12-30T10:27:37,658 | ^ 2025-12-30T10:27:38,555 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/io_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/io_utils.o -fopenmp 2025-12-30T10:27:38,929 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/io/sanitize.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/io/sanitize.o -fopenmp 2025-12-30T10:27:39,147 src/ViennaRNA/io/sanitize.c: In function ‘sanitize_input’: 2025-12-30T10:27:39,148 src/ViennaRNA/io/sanitize.c:570:47: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:39,149 570 | if ((j == 0) && (i >= hpos) && (i < (hpos + injector_len))) { 2025-12-30T10:27:39,150 | ^ 2025-12-30T10:27:39,151 src/ViennaRNA/io/sanitize.c:706:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:39,152 706 | if (hpos < (79 - injector_len)) 2025-12-30T10:27:39,152 | ^ 2025-12-30T10:27:42,146 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/findpath.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/findpath.o -fopenmp 2025-12-30T10:27:42,978 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/local_neighbors.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/local_neighbors.o -fopenmp 2025-12-30T10:27:43,121 src/ViennaRNA/landscape/local_neighbors.c: In function ‘insertions’: 2025-12-30T10:27:43,122 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,123 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,123 | ^ 2025-12-30T10:27:43,124 src/ViennaRNA/landscape/local_neighbors.c:351:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,124 351 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2025-12-30T10:27:43,125 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,125 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,126 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,127 | ^ 2025-12-30T10:27:43,127 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,128 27 | } else { code } \ 2025-12-30T10:27:43,128 | ^~~~ 2025-12-30T10:27:43,129 src/ViennaRNA/landscape/local_neighbors.c:352:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,129 352 | FOR_UNPAIRED(pt, j, j = i + 1, j <= last_j, j++, { 2025-12-30T10:27:43,130 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,130 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,131 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,132 | ^ 2025-12-30T10:27:43,133 src/ViennaRNA/landscape/local_neighbors.c:358:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,133 358 | FOR_UNPAIRED(pt, i, i = first_i, i <= last_i, i++, { 2025-12-30T10:27:43,134 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,134 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,135 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,136 | ^ 2025-12-30T10:27:43,136 src/ViennaRNA/landscape/local_neighbors.c:27:16: note: in definition of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,137 27 | } else { code } \ 2025-12-30T10:27:43,138 | ^~~~ 2025-12-30T10:27:43,139 src/ViennaRNA/landscape/local_neighbors.c:359:7: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,139 359 | FOR_UNPAIRED(pt, j, j = first_j, j <= last_j, j++, { 2025-12-30T10:27:43,140 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,140 src/ViennaRNA/landscape/local_neighbors.c: In function ‘deletion_range’: 2025-12-30T10:27:43,141 src/ViennaRNA/landscape/local_neighbors.c:32:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,142 32 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,142 | ^ 2025-12-30T10:27:43,143 src/ViennaRNA/landscape/local_neighbors.c:379:3: note: in expansion of macro ‘FOR_PAIRED’ 2025-12-30T10:27:43,143 379 | FOR_PAIRED(pt, i, i = start, i <= stop, i++, { 2025-12-30T10:27:43,144 | ^~~~~~~~~~ 2025-12-30T10:27:43,145 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_pos’: 2025-12-30T10:27:43,145 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,146 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,147 | ^ 2025-12-30T10:27:43,147 src/ViennaRNA/landscape/local_neighbors.c:398:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,148 398 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-30T10:27:43,148 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,149 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,149 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,150 | ^ 2025-12-30T10:27:43,150 src/ViennaRNA/landscape/local_neighbors.c:403:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,150 403 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-30T10:27:43,151 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,151 src/ViennaRNA/landscape/local_neighbors.c: In function ‘shift_both’: 2025-12-30T10:27:43,152 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,152 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,153 | ^ 2025-12-30T10:27:43,153 src/ViennaRNA/landscape/local_neighbors.c:425:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,154 425 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-30T10:27:43,154 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,155 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,155 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,156 | ^ 2025-12-30T10:27:43,156 src/ViennaRNA/landscape/local_neighbors.c:433:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,157 433 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-30T10:27:43,157 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,158 src/ViennaRNA/landscape/local_neighbors.c:25:23: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:43,159 25 | if (ptable[idx] > idx) { \ 2025-12-30T10:27:43,160 | ^ 2025-12-30T10:27:43,160 src/ViennaRNA/landscape/local_neighbors.c:441:5: note: in expansion of macro ‘FOR_UNPAIRED’ 2025-12-30T10:27:43,161 441 | FOR_UNPAIRED(pt, k, k = start, k <= end, k++, { 2025-12-30T10:27:43,161 | ^~~~~~~~~~~~ 2025-12-30T10:27:43,162 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_insertion’: 2025-12-30T10:27:43,164 src/ViennaRNA/landscape/local_neighbors.c:463:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-30T10:27:43,164 463 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-30T10:27:43,165 | ^~~~~~~~~~~~~ 2025-12-30T10:27:43,165 src/ViennaRNA/landscape/local_neighbors.c:462:23: warning: unused variable ‘k’ [-Wunused-variable] 2025-12-30T10:27:43,166 462 | int i, j, k, mi, mj, enc5, enc3; 2025-12-30T10:27:43,167 | ^ 2025-12-30T10:27:43,167 src/ViennaRNA/landscape/local_neighbors.c:462:20: warning: unused variable ‘j’ [-Wunused-variable] 2025-12-30T10:27:43,168 462 | int i, j, k, mi, mj, enc5, enc3; 2025-12-30T10:27:43,169 | ^ 2025-12-30T10:27:43,170 src/ViennaRNA/landscape/local_neighbors.c:461:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-30T10:27:43,170 461 | unsigned int n = fc->length; 2025-12-30T10:27:43,171 | ^ 2025-12-30T10:27:43,172 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_local_nb_deletion’: 2025-12-30T10:27:43,173 src/ViennaRNA/landscape/local_neighbors.c:578:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-30T10:27:43,174 578 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-30T10:27:43,174 | ^~~~~~~~~~~~~ 2025-12-30T10:27:43,175 src/ViennaRNA/landscape/local_neighbors.c:577:23: warning: unused variable ‘k’ [-Wunused-variable] 2025-12-30T10:27:43,175 577 | int i, j, k, enc5, enc3; 2025-12-30T10:27:43,176 | ^ 2025-12-30T10:27:43,176 src/ViennaRNA/landscape/local_neighbors.c:577:20: warning: unused variable ‘j’ [-Wunused-variable] 2025-12-30T10:27:43,177 577 | int i, j, k, enc5, enc3; 2025-12-30T10:27:43,177 | ^ 2025-12-30T10:27:43,178 src/ViennaRNA/landscape/local_neighbors.c:576:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-30T10:27:43,178 576 | unsigned int n = fc->length; 2025-12-30T10:27:43,179 | ^ 2025-12-30T10:27:43,179 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_insertion’: 2025-12-30T10:27:43,180 src/ViennaRNA/landscape/local_neighbors.c:970:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-30T10:27:43,181 970 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-30T10:27:43,181 | ^~~~~~~~~~~~~ 2025-12-30T10:27:43,182 src/ViennaRNA/landscape/local_neighbors.c:968:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-30T10:27:43,182 968 | unsigned int n = fc->length; 2025-12-30T10:27:43,183 | ^ 2025-12-30T10:27:43,183 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_deletion’: 2025-12-30T10:27:43,184 src/ViennaRNA/landscape/local_neighbors.c:1073:17: warning: unused variable ‘min_loop_size’ [-Wunused-variable] 2025-12-30T10:27:43,184 1073 | int min_loop_size = fc->params->model_details.min_loop_size; 2025-12-30T10:27:43,185 | ^~~~~~~~~~~~~ 2025-12-30T10:27:43,186 src/ViennaRNA/landscape/local_neighbors.c:1072:20: warning: unused variable ‘j’ [-Wunused-variable] 2025-12-30T10:27:43,187 1072 | int i, j, enc5, enc3; 2025-12-30T10:27:43,187 | ^ 2025-12-30T10:27:43,188 src/ViennaRNA/landscape/local_neighbors.c:1072:17: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:27:43,189 1072 | int i, j, enc5, enc3; 2025-12-30T10:27:43,190 | ^ 2025-12-30T10:27:43,190 src/ViennaRNA/landscape/local_neighbors.c:1071:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-30T10:27:43,191 1071 | unsigned int n = fc->length; 2025-12-30T10:27:43,192 | ^ 2025-12-30T10:27:43,193 src/ViennaRNA/landscape/local_neighbors.c: In function ‘generate_conflicts_local_nb_shift’: 2025-12-30T10:27:43,193 src/ViennaRNA/landscape/local_neighbors.c:1100:17: warning: unused variable ‘n’ [-Wunused-variable] 2025-12-30T10:27:43,194 1100 | unsigned int n = fc->length; 2025-12-30T10:27:43,195 | ^ 2025-12-30T10:27:46,134 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/move.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/move.o -fopenmp 2025-12-30T10:27:46,457 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/neighbor.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/neighbor.o -fopenmp 2025-12-30T10:27:46,644 In file included from src/ViennaRNA/pair_mat.h:5, 2025-12-30T10:27:46,645 from src/ViennaRNA/landscape/neighbor.c:6: 2025-12-30T10:27:46,646 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_right’: 2025-12-30T10:27:46,646 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:27:46,647 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:27:46,647 | ^ 2025-12-30T10:27:46,648 src/ViennaRNA/landscape/neighbor.c:373:17: note: in expansion of macro ‘MIN2’ 2025-12-30T10:27:46,649 373 | int length = MIN2(vc->length + 1, end); 2025-12-30T10:27:46,649 | ^~~~ 2025-12-30T10:27:46,650 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:27:46,650 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:27:46,651 | ^~~ 2025-12-30T10:27:46,652 src/ViennaRNA/landscape/neighbor.c:373:17: note: in expansion of macro ‘MIN2’ 2025-12-30T10:27:46,652 373 | int length = MIN2(vc->length + 1, end); 2025-12-30T10:27:46,653 | ^~~~ 2025-12-30T10:27:46,654 src/ViennaRNA/landscape/neighbor.c: In function ‘shift_bpins_to_i_from_right’: 2025-12-30T10:27:46,654 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:27:46,655 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:27:46,656 | ^ 2025-12-30T10:27:46,657 src/ViennaRNA/landscape/neighbor.c:501:17: note: in expansion of macro ‘MIN2’ 2025-12-30T10:27:46,657 501 | int length = MIN2(vc->length, end); 2025-12-30T10:27:46,658 | ^~~~ 2025-12-30T10:27:46,659 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:27:46,660 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:27:46,661 | ^~~ 2025-12-30T10:27:46,662 src/ViennaRNA/landscape/neighbor.c:501:17: note: in expansion of macro ‘MIN2’ 2025-12-30T10:27:46,663 501 | int length = MIN2(vc->length, end); 2025-12-30T10:27:46,663 | ^~~~ 2025-12-30T10:27:46,677 src/ViennaRNA/landscape/neighbor.c: In function ‘move_nxt_val_bp_right’: 2025-12-30T10:27:46,679 src/ViennaRNA/landscape/neighbor.c:1720:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:46,680 1720 | while (j <= length && pt[j] > j) // '(' 2025-12-30T10:27:46,681 | ^~ 2025-12-30T10:27:46,682 src/ViennaRNA/landscape/neighbor.c:1722:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:27:46,683 1722 | if (j > length || (pt[j] <= j && pt[j] > 0)) // ')' /* here, the current loop ends */ 2025-12-30T10:27:46,684 | ^ 2025-12-30T10:27:46,685 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpins’: 2025-12-30T10:27:46,685 src/ViennaRNA/landscape/neighbor.c:1750:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:46,686 1750 | for (i = 1; i <= vc->length; i++) 2025-12-30T10:27:46,687 | ^~ 2025-12-30T10:27:46,689 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpdel’: 2025-12-30T10:27:46,692 src/ViennaRNA/landscape/neighbor.c:1835:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:46,692 1835 | for (i = 1; i <= vc->length; i++) 2025-12-30T10:27:46,693 | ^~ 2025-12-30T10:27:46,696 src/ViennaRNA/landscape/neighbor.c: In function ‘move_noLP_bpshift’: 2025-12-30T10:27:46,698 src/ViennaRNA/landscape/neighbor.c:1916:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:46,699 1916 | for (i = 1; i <= vc->length; i++) 2025-12-30T10:27:46,700 | ^~ 2025-12-30T10:27:46,702 src/ViennaRNA/landscape/neighbor.c:1928:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:46,702 1928 | if (j < vc->length) { 2025-12-30T10:27:46,703 | ^ 2025-12-30T10:27:46,705 src/ViennaRNA/landscape/neighbor.c:1930:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:27:46,705 1930 | if (k >= 1 && k < vc->length && k != i - 1 && pt_tmp[k + 1] == 0 && 2025-12-30T10:27:46,706 | ^ 2025-12-30T10:27:48,807 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/landscape/walk.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/landscape/walk.o -fopenmp 2025-12-30T10:27:49,001 src/ViennaRNA/landscape/walk.c:141:1: warning: ‘isShift’ defined but not used [-Wunused-function] 2025-12-30T10:27:49,002 141 | isShift(vrna_move_t *m) 2025-12-30T10:27:49,003 | ^~~~~~~ 2025-12-30T10:27:49,004 In file included from src/ViennaRNA/landscape/walk.c:25: 2025-12-30T10:27:49,004 src/ViennaRNA/landscape/local_neighbors.inc:70:1: warning: ‘free_incremental_movelist’ defined but not used [-Wunused-function] 2025-12-30T10:27:49,005 70 | free_incremental_movelist(struct movelist *m) 2025-12-30T10:27:49,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:27:49,007 src/ViennaRNA/landscape/local_neighbors.inc:52:1: warning: ‘init_incremental_movelist’ defined but not used [-Wunused-function] 2025-12-30T10:27:49,007 52 | init_incremental_movelist(unsigned int n) 2025-12-30T10:27:49,008 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:27:49,009 src/ViennaRNA/landscape/local_neighbors.inc:17:1: warning: ‘add_to_incremental_move_list’ defined but not used [-Wunused-function] 2025-12-30T10:27:49,009 17 | add_to_incremental_move_list(vrna_fold_compound_t *fc, 2025-12-30T10:27:49,010 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:27:49,428 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_bin.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_bin.o -fopenmp 2025-12-30T10:27:49,717 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_chain.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_chain.o -fopenmp 2025-12-30T10:27:50,130 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_gaussian.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_gaussian.o -fopenmp 2025-12-30T10:27:50,416 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_kde.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_kde.o -fopenmp 2025-12-30T10:27:50,638 src/ViennaRNA/math/fun_kde.c: In function ‘vrna_math_fun_dbl_kde’: 2025-12-30T10:27:50,639 src/ViennaRNA/math/fun_kde.c:138:10: warning: variable ‘result’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:27:50,639 138 | double result = 0.; 2025-12-30T10:27:50,640 | ^~~~~~ 2025-12-30T10:27:50,641 src/ViennaRNA/math/fun_kde.c: In function ‘gaussian_bandwidth_default’: 2025-12-30T10:27:50,642 src/ViennaRNA/math/fun_kde.c:236:14: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:27:50,643 236 | size_t i, count; 2025-12-30T10:27:50,644 | ^~~~~ 2025-12-30T10:27:50,817 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_linear.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_linear.o -fopenmp 2025-12-30T10:27:51,139 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_log.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_log.o -fopenmp 2025-12-30T10:27:51,434 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/math/fun_logistic.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/math/fun_logistic.o -fopenmp 2025-12-30T10:27:51,720 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/Lfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/Lfold.o -fopenmp 2025-12-30T10:27:51,980 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/alifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/alifold.o -fopenmp 2025-12-30T10:27:52,407 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/cofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/cofold.o -fopenmp 2025-12-30T10:27:52,794 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/fold.o -fopenmp 2025-12-30T10:27:53,544 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe.o -fopenmp 2025-12-30T10:27:53,854 src/ViennaRNA/mfe/mfe.c: In function ‘fill_arrays’: 2025-12-30T10:27:53,855 src/ViennaRNA/mfe/mfe.c:424:35: warning: variable ‘uniq_ML’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:27:53,856 424 | unsigned int i, j, length, uniq_ML; 2025-12-30T10:27:53,856 | ^~~~~~~ 2025-12-30T10:28:05,978 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_exterior.o -fopenmp 2025-12-30T10:28:08,833 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_exterior_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_exterior_window.o -fopenmp 2025-12-30T10:28:11,573 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_gquad.o -fopenmp 2025-12-30T10:28:13,292 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_internal.o -fopenmp 2025-12-30T10:28:13,555 src/ViennaRNA/mfe/mfe_internal.c: In function ‘mfe_stacks’: 2025-12-30T10:28:13,555 src/ViennaRNA/mfe/mfe_internal.c:166:38: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:28:13,556 166 | unsigned int k, l, *sn, n_seq, s, n, type, type2; 2025-12-30T10:28:13,556 | ^ 2025-12-30T10:28:13,557 src/ViennaRNA/mfe/mfe_internal.c:166:24: warning: variable ‘sn’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:28:13,558 166 | unsigned int k, l, *sn, n_seq, s, n, type, type2; 2025-12-30T10:28:13,558 | ^~ 2025-12-30T10:28:16,995 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_multibranch.o -fopenmp 2025-12-30T10:28:21,516 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_window.o -fopenmp 2025-12-30T10:28:21,845 src/ViennaRNA/mfe/mfe_window.c: In function ‘print_block_list’: 2025-12-30T10:28:21,847 src/ViennaRNA/mfe/mfe_window.c:1635:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-12-30T10:28:21,848 1635 | printf("block %lu: en=%d, start: %lu, end: %lu, shift: %lu\n", 2025-12-30T10:28:21,849 | ~~^ 2025-12-30T10:28:21,849 | | 2025-12-30T10:28:21,850 | long unsigned int 2025-12-30T10:28:21,850 | %u 2025-12-30T10:28:21,851 1636 | cnt, 2025-12-30T10:28:21,852 | ~~~ 2025-12-30T10:28:21,852 | | 2025-12-30T10:28:21,853 | size_t {aka unsigned int} 2025-12-30T10:28:21,854 src/ViennaRNA/mfe/mfe_window.c:1641:13: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2025-12-30T10:28:21,854 1641 | printf("%lu blocks remaining\n", cnt); 2025-12-30T10:28:21,855 | ~~^ ~~~ 2025-12-30T10:28:21,856 | | | 2025-12-30T10:28:21,856 | long unsigned int size_t {aka unsigned int} 2025-12-30T10:28:21,857 | %u 2025-12-30T10:28:23,710 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_window_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_window_wrappers.o -fopenmp 2025-12-30T10:28:23,961 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mfe/mfe_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mfe/mfe_wrappers.o -fopenmp 2025-12-30T10:28:24,399 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/mm.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/mm.o -fopenmp 2025-12-30T10:28:24,630 src/ViennaRNA/mm.c: In function ‘maximumMatching2Constraint’: 2025-12-30T10:28:24,631 src/ViennaRNA/mm.c:187:58: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:28:24,632 187 | if ((unsigned int)ptable[l] != j && ptable2[l] != j) 2025-12-30T10:28:24,633 | ^~ 2025-12-30T10:28:25,301 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/model.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/model.o -fopenmp 2025-12-30T10:28:26,335 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/move_set.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/move_set.o -fopenmp 2025-12-30T10:28:28,483 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/convert.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/convert.o -fopenmp 2025-12-30T10:28:29,262 In file included from src/ViennaRNA/params/convert.c:28: 2025-12-30T10:28:29,263 src/ViennaRNA/params/1.8.4_epars.h:100:13: warning: ‘oldinternal_loop37_184’ defined but not used [-Wunused-variable] 2025-12-30T10:28:29,264 100 | PRIVATE int oldinternal_loop37_184[31] = { 2025-12-30T10:28:29,264 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:28:29,265 src/ViennaRNA/params/1.8.4_epars.h:90:13: warning: ‘oldbulge37_184’ defined but not used [-Wunused-variable] 2025-12-30T10:28:29,266 90 | PRIVATE int oldbulge37_184[31] = { 2025-12-30T10:28:29,266 | ^~~~~~~~~~~~~~ 2025-12-30T10:28:29,267 src/ViennaRNA/params/1.8.4_epars.h:80:13: warning: ‘oldhairpin37_184’ defined but not used [-Wunused-variable] 2025-12-30T10:28:29,267 80 | PRIVATE int oldhairpin37_184[31] = { /* from ViennaRNA 1.3 */ 2025-12-30T10:28:29,268 | ^~~~~~~~~~~~~~~~ 2025-12-30T10:28:29,269 src/ViennaRNA/params/1.8.4_epars.h:50:16: warning: ‘Tmeasure_184’ defined but not used [-Wunused-variable] 2025-12-30T10:28:29,269 50 | PRIVATE double Tmeasure_184 = 37 + K0; /* temperature of param measurements */ 2025-12-30T10:28:29,270 | ^~~~~~~~~~~~ 2025-12-30T10:28:30,239 In function ‘write_new_parameter_file’, 2025-12-30T10:28:30,240 inlined from ‘convert_parameter_file’ at src/ViennaRNA/params/convert.c:173:3: 2025-12-30T10:28:30,240 src/ViennaRNA/params/convert.c:1168:9: warning: ‘strncpy’ specified bound 6 equals destination size [-Wstringop-truncation] 2025-12-30T10:28:30,241 1168 | strncpy(bla, Tetraloops_184 + c * 7, 6); 2025-12-30T10:28:30,241 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:28:30,242 src/ViennaRNA/params/convert.c:1147:9: warning: ‘strncpy’ output may be truncated copying 5 bytes from a string of length 240 [-Wstringop-truncation] 2025-12-30T10:28:30,243 1147 | strncpy(bla, Triloops_184 + c * 6, 5); 2025-12-30T10:28:30,243 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:28:31,637 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/default.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/default.o -fopenmp 2025-12-30T10:28:32,569 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/io.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/io.o -fopenmp 2025-12-30T10:28:46,051 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/params.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/params.o -fopenmp 2025-12-30T10:28:49,344 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/ribosum.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/ribosum.o -fopenmp 2025-12-30T10:28:51,031 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/salt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/salt.o -fopenmp 2025-12-30T10:28:51,451 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/params/special_const.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/params/special_const.o -fopenmp 2025-12-30T10:28:51,545 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/alipfold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/alipfold.o -fopenmp 2025-12-30T10:28:52,059 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/part_func_co.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/part_func_co.o -fopenmp 2025-12-30T10:28:52,603 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/part_func_up.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/part_func_up.o -fopenmp 2025-12-30T10:28:52,873 src/ViennaRNA/partfunc/part_func_up.c: In function ‘free_pu_contrib_struct’: 2025-12-30T10:28:52,874 src/ViennaRNA/partfunc/part_func_up.c:236:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:28:52,875 236 | for (i = 0; i <= pu->length; i++) { 2025-12-30T10:28:52,875 | ^~ 2025-12-30T10:28:52,876 src/ViennaRNA/partfunc/part_func_up.c: In function ‘pf_unstru’: 2025-12-30T10:28:52,877 src/ViennaRNA/partfunc/part_func_up.c:284:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:28:52,878 284 | for (i = 0; i < size; i++) 2025-12-30T10:28:52,878 | ^ 2025-12-30T10:28:55,532 src/ViennaRNA/partfunc/part_func_up.c: In function ‘pf_interact’: 2025-12-30T10:28:55,533 src/ViennaRNA/partfunc/part_func_up.c:943:69: warning: ‘p_c2_S’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:28:55,533 943 | tt = qint_4[i][j][a][b] * p_c_S[add_i5][add_i3] * p_c2_S[j][b] * scalew * rev_d; 2025-12-30T10:28:55,534 | ^ 2025-12-30T10:28:55,534 src/ViennaRNA/partfunc/part_func_up.c:608:49: note: ‘p_c2_S’ was declared here 2025-12-30T10:28:55,535 608 | double temp, Z, rev_d, E, Z2, **p_c_S, **p_c2_S, int_scale; 2025-12-30T10:28:55,536 | ^~~~~~ 2025-12-30T10:28:56,646 src/ViennaRNA/partfunc/part_func_up.c: In function ‘Up_plot’: 2025-12-30T10:28:56,647 src/ViennaRNA/partfunc/part_func_up.c:1665:10: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:28:56,648 1665 | return ret; 2025-12-30T10:28:56,648 | ^~~ 2025-12-30T10:28:56,649 src/ViennaRNA/partfunc/part_func_up.c:1637:11: note: ‘ret’ was declared here 2025-12-30T10:28:56,649 1637 | int ret; 2025-12-30T10:28:56,650 | ^~~ 2025-12-30T10:28:56,789 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/partfunc.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/partfunc.o -fopenmp 2025-12-30T10:29:03,306 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_exterior.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_exterior.o -fopenmp 2025-12-30T10:29:03,553 src/ViennaRNA/partfunc/pf_exterior.c: In function ‘exp_E_ext_fast’: 2025-12-30T10:29:03,555 src/ViennaRNA/partfunc/pf_exterior.c:564:30: warning: variable ‘hc’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:03,556 564 | vrna_hc_t *hc; 2025-12-30T10:29:03,557 | ^~ 2025-12-30T10:29:04,646 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_fold.o -fopenmp 2025-12-30T10:29:05,423 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_gquad.o -fopenmp 2025-12-30T10:29:05,664 src/ViennaRNA/partfunc/pf_gquad.c: In function ‘get_plist_gquad_from_pr_max’: 2025-12-30T10:29:05,665 src/ViennaRNA/partfunc/pf_gquad.c:639:18: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:05,666 639 | for (i = gi; i < gj; i++) { 2025-12-30T10:29:05,666 | ^ 2025-12-30T10:29:05,667 src/ViennaRNA/partfunc/pf_gquad.c:640:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:05,667 640 | for (j = i; j <= gj; j++) { 2025-12-30T10:29:05,668 | ^~ 2025-12-30T10:29:05,669 src/ViennaRNA/partfunc/pf_gquad.c: In function ‘vrna_plist_gquad_from_pr_max’: 2025-12-30T10:29:05,670 src/ViennaRNA/partfunc/pf_gquad.c:792:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:05,670 792 | for (i = gi; i < gj; i++) { 2025-12-30T10:29:05,670 | ^ 2025-12-30T10:29:05,671 src/ViennaRNA/partfunc/pf_gquad.c:793:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:05,672 793 | for (j = i; j <= gj; j++) { 2025-12-30T10:29:05,672 | ^~ 2025-12-30T10:29:07,110 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_internal.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_internal.o -fopenmp 2025-12-30T10:29:10,837 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_multibranch.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_multibranch.o -fopenmp 2025-12-30T10:29:12,635 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_multifold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_multifold.o -fopenmp 2025-12-30T10:29:12,906 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_window.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_window.o -fopenmp 2025-12-30T10:29:13,208 src/ViennaRNA/partfunc/pf_window.c: In function ‘compute_probs’: 2025-12-30T10:29:13,209 src/ViennaRNA/partfunc/pf_window.c:1170:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:13,209 1170 | if (max_m > l + MAXLOOP - u1 + 1) 2025-12-30T10:29:13,210 | ^ 2025-12-30T10:29:13,220 src/ViennaRNA/partfunc/pf_window.c: In function ‘compute_pU’: 2025-12-30T10:29:13,221 src/ViennaRNA/partfunc/pf_window.c:1622:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,221 1622 | if ((hc->up_ml[k + 1] >= j3 - k - 1) && (i5 < k)) { 2025-12-30T10:29:13,222 | ^~ 2025-12-30T10:29:13,223 src/ViennaRNA/partfunc/pf_window.c:1637:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,223 1637 | if ((hc->up_ml[i5 + 1] >= k + ulength - i5) && (j3 - 1 > k + ulength)) { 2025-12-30T10:29:13,224 | ^~ 2025-12-30T10:29:13,225 src/ViennaRNA/partfunc/pf_window.c:1653:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,225 1653 | if ((hc->up_ml[k + 1] >= ulength) && (i5 < k) && (j3 - 1 > k + ulength)) { 2025-12-30T10:29:13,226 | ^~ 2025-12-30T10:29:13,231 src/ViennaRNA/partfunc/pf_window.c:1738:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,231 1738 | if (hc->up_ml[k + 1] >= len) { 2025-12-30T10:29:13,232 | ^~ 2025-12-30T10:29:13,232 src/ViennaRNA/partfunc/pf_window.c:1745:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,233 1745 | if (hc->up_ml[k + 1] >= len) { 2025-12-30T10:29:13,233 | ^~ 2025-12-30T10:29:13,234 src/ViennaRNA/partfunc/pf_window.c:1756:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,234 1756 | if (hc->up_ml[k + 1] >= len) 2025-12-30T10:29:13,235 | ^~ 2025-12-30T10:29:13,236 src/ViennaRNA/partfunc/pf_window.c:1761:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,236 1761 | if (hc->up_ml[k + 1] >= len) 2025-12-30T10:29:13,237 | ^~ 2025-12-30T10:29:13,238 src/ViennaRNA/partfunc/pf_window.c:1772:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,238 1772 | if (hc->up_ml[k + 1] >= len) { 2025-12-30T10:29:13,239 | ^~ 2025-12-30T10:29:13,240 src/ViennaRNA/partfunc/pf_window.c:1790:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,241 1790 | if (hc->up_ml[k + 1] >= len) { 2025-12-30T10:29:13,242 | ^~ 2025-12-30T10:29:13,245 src/ViennaRNA/partfunc/pf_window.c:1836:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,245 1836 | (hc->up_ext[k - winSize + 1] >= winSize)) 2025-12-30T10:29:13,246 | ^~ 2025-12-30T10:29:13,246 src/ViennaRNA/partfunc/pf_window.c:1843:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,247 1843 | (hc->up_ext[k - winSize + 1] >= winSize)) { 2025-12-30T10:29:13,248 | ^~ 2025-12-30T10:29:13,249 src/ViennaRNA/partfunc/pf_window.c:1865:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,249 1865 | if (hc->up_ext[k - startu + 1] >= startu) { 2025-12-30T10:29:13,250 | ^~ 2025-12-30T10:29:13,252 src/ViennaRNA/partfunc/pf_window.c:1890:38: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:13,252 1890 | if (hc->up_ext[k - startu + 1] >= startu) { 2025-12-30T10:29:13,253 | ^~ 2025-12-30T10:29:16,523 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/partfunc/pf_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/partfunc/pf_wrappers.o -fopenmp 2025-12-30T10:29:16,825 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/perturbation_fold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/perturbation_fold.o -fopenmp 2025-12-30T10:29:17,532 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plex.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex.o -fopenmp 2025-12-30T10:29:17,795 src/ViennaRNA/plex.c: In function ‘duplexfold_XS’: 2025-12-30T10:29:17,796 src/ViennaRNA/plex.c:441:41: warning: variable ‘bonus_x’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,797 441 | int dx_5, dx_3, dy_5, dy_3, dGx, dGy, bonus_x; 2025-12-30T10:29:17,798 | ^~~~~~~ 2025-12-30T10:29:17,816 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2025-12-30T10:29:17,817 src/ViennaRNA/plex.c:784:11: warning: unused variable ‘jdiff’ [-Wunused-variable] 2025-12-30T10:29:17,817 784 | int jdiff = j_pos + j - 11; 2025-12-30T10:29:17,818 | ^~~~~ 2025-12-30T10:29:17,820 src/ViennaRNA/plex.c:1035:7: warning: variable ‘endy’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,823 1035 | int endy; 2025-12-30T10:29:17,824 | ^~~~ 2025-12-30T10:29:17,824 src/ViennaRNA/plex.c:1033:7: warning: variable ‘endx’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,825 1033 | int endx; 2025-12-30T10:29:17,826 | ^~~~ 2025-12-30T10:29:17,826 src/ViennaRNA/plex.c:642:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,827 642 | int maxPenalty[4]; 2025-12-30T10:29:17,828 | ^~~~~~~~~~ 2025-12-30T10:29:17,848 src/ViennaRNA/plex.c: In function ‘fbacktrack_XS’: 2025-12-30T10:29:17,849 src/ViennaRNA/plex.c:1132:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,850 1132 | int maxPenalty[4]; 2025-12-30T10:29:17,850 | ^~~~~~~~~~ 2025-12-30T10:29:17,868 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2025-12-30T10:29:17,869 src/ViennaRNA/plex.c:1979:13: warning: variable ‘maxPenalty’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,870 1979 | int maxPenalty[4]; 2025-12-30T10:29:17,871 | ^~~~~~~~~~ 2025-12-30T10:29:17,886 src/ViennaRNA/plex.c: In function ‘duplexfold’: 2025-12-30T10:29:17,889 src/ViennaRNA/plex.c:2710:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,889 2710 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-30T10:29:17,890 | ^~ 2025-12-30T10:29:17,911 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2025-12-30T10:29:17,914 src/ViennaRNA/plex.c:2913:39: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:17,914 2913 | int i, j, Emin, i_min, j_min, l1; 2025-12-30T10:29:17,915 | ^~ 2025-12-30T10:29:19,571 src/ViennaRNA/plex.c:3246:16: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:19,572 3246 | j0 = MAX2(j - 1, 11); 2025-12-30T10:29:19,572 | ^ 2025-12-30T10:29:19,574 src/ViennaRNA/plex.c:2924:13: note: ‘max_pos_j’ was declared here 2025-12-30T10:29:19,574 2924 | int max_pos_j; 2025-12-30T10:29:19,574 | ^~~~~~~~~ 2025-12-30T10:29:19,575 In function ‘fbacktrack’, 2025-12-30T10:29:19,575 inlined from ‘fduplexfold’ at src/ViennaRNA/plex.c:3184:11: 2025-12-30T10:29:19,576 src/ViennaRNA/plex.c:3258:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:19,577 3258 | type = pair[S1[i]][S2[j]]; 2025-12-30T10:29:19,577 | ^ 2025-12-30T10:29:19,578 src/ViennaRNA/plex.c: In function ‘fduplexfold’: 2025-12-30T10:29:19,579 src/ViennaRNA/plex.c:2923:13: note: ‘max_pos’ was declared here 2025-12-30T10:29:19,579 2923 | int max_pos; /* get position of the best hit */ 2025-12-30T10:29:19,580 | ^~~~~~~ 2025-12-30T10:29:22,476 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2025-12-30T10:29:22,477 src/ViennaRNA/plex.c:1048:6: warning: ‘max_pos_j’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:22,477 1048 | if (j_min > 11) 2025-12-30T10:29:22,478 | ^ 2025-12-30T10:29:22,479 src/ViennaRNA/plex.c:637:13: note: ‘max_pos_j’ was declared here 2025-12-30T10:29:22,479 637 | int max_pos_j; 2025-12-30T10:29:22,480 | ^~~~~~~~~ 2025-12-30T10:29:22,481 In function ‘fbacktrack_XS’, 2025-12-30T10:29:22,482 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:1013:11: 2025-12-30T10:29:22,483 src/ViennaRNA/plex.c:1159:20: warning: ‘max_pos’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:22,483 1159 | type = pair[S1[i]][S2[j]]; 2025-12-30T10:29:22,484 | ^ 2025-12-30T10:29:22,484 src/ViennaRNA/plex.c: In function ‘fduplexfold_XS’: 2025-12-30T10:29:22,485 src/ViennaRNA/plex.c:636:13: note: ‘max_pos’ was declared here 2025-12-30T10:29:22,485 636 | int max_pos; /* get position of the best hit */ 2025-12-30T10:29:22,486 | ^~~~~~~ 2025-12-30T10:29:22,486 In function ‘update_dfold_params’, 2025-12-30T10:29:22,487 inlined from ‘fbacktrack_XS’ at src/ViennaRNA/plex.c:1148:7, 2025-12-30T10:29:22,488 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:1013:11: 2025-12-30T10:29:22,488 src/ViennaRNA/plex.c:4536:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-30T10:29:22,489 4536 | free(P); 2025-12-30T10:29:22,490 | ^~~~~~~ 2025-12-30T10:29:22,491 In function ‘fbacktrack_XS’, 2025-12-30T10:29:22,491 inlined from ‘fduplexfold_XS’ at src/ViennaRNA/plex.c:1013:11: 2025-12-30T10:29:22,492 src/ViennaRNA/plex.c:1147:7: note: call to ‘free’ here 2025-12-30T10:29:22,493 1147 | free(P); 2025-12-30T10:29:22,494 | ^~~~~~~ 2025-12-30T10:29:24,597 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2025-12-30T10:29:24,608 src/ViennaRNA/plex.c:2364:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:24,609 2364 | position_j[i + delta] = min_j_colonne; 2025-12-30T10:29:24,610 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-30T10:29:24,610 src/ViennaRNA/plex.c:1975:13: note: ‘min_j_colonne’ was declared here 2025-12-30T10:29:24,611 1975 | int min_j_colonne; 2025-12-30T10:29:24,612 | ^~~~~~~~~~~~~ 2025-12-30T10:29:24,612 In function ‘update_dfold_params’, 2025-12-30T10:29:24,613 inlined from ‘Lduplexfold_XS’ at src/ViennaRNA/plex.c:2008:7: 2025-12-30T10:29:24,613 src/ViennaRNA/plex.c:4536:5: warning: pointer used after ‘free’ [-Wuse-after-free] 2025-12-30T10:29:24,614 4536 | free(P); 2025-12-30T10:29:24,615 | ^~~~~~~ 2025-12-30T10:29:24,615 src/ViennaRNA/plex.c: In function ‘Lduplexfold_XS’: 2025-12-30T10:29:24,616 src/ViennaRNA/plex.c:2007:7: note: call to ‘free’ here 2025-12-30T10:29:24,616 2007 | free(P); 2025-12-30T10:29:24,617 | ^~~~~~~ 2025-12-30T10:29:25,783 src/ViennaRNA/plex.c: In function ‘Lduplexfold’: 2025-12-30T10:29:25,787 src/ViennaRNA/plex.c:4170:27: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:25,788 4170 | position_j[i + delta] = min_j_colonne; 2025-12-30T10:29:25,788 | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-30T10:29:25,790 src/ViennaRNA/plex.c:3862:13: note: ‘min_j_colonne’ was declared here 2025-12-30T10:29:25,791 3862 | int min_j_colonne; 2025-12-30T10:29:25,792 | ^~~~~~~~~~~~~ 2025-12-30T10:29:26,811 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plex_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plex_functions.o -fopenmp 2025-12-30T10:29:27,059 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex’: 2025-12-30T10:29:27,059 src/ViennaRNA/plex_functions.c:274:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,060 274 | for (i = hit_ptr->start_5; i <= hit_ptr->end_5; i++) 2025-12-30T10:29:27,060 | ^~ 2025-12-30T10:29:27,061 src/ViennaRNA/plex_functions.c:276:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,062 276 | for (i = hit_ptr->start_3; i <= hit_ptr->end_3; i++) 2025-12-30T10:29:27,062 | ^~ 2025-12-30T10:29:27,063 src/ViennaRNA/plex_functions.c:308:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,064 308 | for (i = hit_ptr->start_5 - 1; i < hit_ptr->end_5; i++) 2025-12-30T10:29:27,064 | ^ 2025-12-30T10:29:27,065 src/ViennaRNA/plex_functions.c:312:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,066 312 | for (i = hit_ptr->start_3 - 1; i < hit_ptr->end_3; i++) 2025-12-30T10:29:27,066 | ^ 2025-12-30T10:29:27,067 src/ViennaRNA/plex_functions.c: In function ‘vrna_pk_plex_accessibility’: 2025-12-30T10:29:27,068 src/ViennaRNA/plex_functions.c:407:26: warning: unused variable ‘dpp’ [-Wunused-variable] 2025-12-30T10:29:27,069 407 | plist *dpp = NULL; 2025-12-30T10:29:27,070 | ^~~ 2025-12-30T10:29:27,070 src/ViennaRNA/plex_functions.c:406:32: warning: unused variable ‘kT’ [-Wunused-variable] 2025-12-30T10:29:27,071 406 | double **pup, kT; 2025-12-30T10:29:27,071 | ^~ 2025-12-30T10:29:27,072 src/ViennaRNA/plex_functions.c:406:27: warning: unused variable ‘pup’ [-Wunused-variable] 2025-12-30T10:29:27,072 406 | double **pup, kT; 2025-12-30T10:29:27,073 | ^~~ 2025-12-30T10:29:27,073 src/ViennaRNA/plex_functions.c:405:37: warning: variable ‘r’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:27,074 405 | int **a = NULL, r; 2025-12-30T10:29:27,074 | ^ 2025-12-30T10:29:27,075 src/ViennaRNA/plex_functions.c:405:27: warning: unused variable ‘a’ [-Wunused-variable] 2025-12-30T10:29:27,075 405 | int **a = NULL, r; 2025-12-30T10:29:27,076 | ^ 2025-12-30T10:29:27,076 src/ViennaRNA/plex_functions.c: In function ‘duplexfold_XS’: 2025-12-30T10:29:27,077 src/ViennaRNA/plex_functions.c:588:9: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:27,077 588 | if (n > turn + 1) { 2025-12-30T10:29:27,078 | ^ 2025-12-30T10:29:27,078 src/ViennaRNA/plex_functions.c:600:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,079 600 | for (j = i + turn + 1; j <= n; j++) { 2025-12-30T10:29:27,079 | ^~ 2025-12-30T10:29:27,080 src/ViennaRNA/plex_functions.c:616:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,081 616 | for (l = i + turn + 1; l <= n; l++) { 2025-12-30T10:29:27,082 | ^~ 2025-12-30T10:29:27,083 src/ViennaRNA/plex_functions.c:665:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,084 665 | for (j = i + turn + 1; j <= n; j++) { 2025-12-30T10:29:27,085 | ^~ 2025-12-30T10:29:27,085 In file included from src/ViennaRNA/plex_functions.c:25: 2025-12-30T10:29:27,086 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:29:27,087 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:29:27,087 | ^ 2025-12-30T10:29:27,088 src/ViennaRNA/plex_functions.c:667:25: note: in expansion of macro ‘MIN2’ 2025-12-30T10:29:27,089 667 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2025-12-30T10:29:27,089 | ^~~~ 2025-12-30T10:29:27,090 src/ViennaRNA/utils/basic.h:112:44: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:29:27,090 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:29:27,091 | ^~~ 2025-12-30T10:29:27,092 src/ViennaRNA/plex_functions.c:667:25: note: in expansion of macro ‘MIN2’ 2025-12-30T10:29:27,092 667 | j_pos_end = MIN2(n + 1, j + max_interaction_length); 2025-12-30T10:29:27,093 | ^~~~ 2025-12-30T10:29:27,094 src/ViennaRNA/plex_functions.c:676:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:27,094 676 | sl = (l < n) ? S1[l + 1] : -1; 2025-12-30T10:29:27,095 | ^ 2025-12-30T10:29:28,240 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.o -fopenmp 2025-12-30T10:29:28,416 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2025-12-30T10:29:28,416 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:13: 2025-12-30T10:29:28,417 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-30T10:29:28,418 446 | isToTheRightPointVector(const double *lineStart, 2025-12-30T10:29:28,418 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2025-12-30T10:29:28,419 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2025-12-30T10:29:28,420 102 | isToTheRightPointVector(const double lineStart[2], 2025-12-30T10:29:28,420 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:29:28,421 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:447:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-30T10:29:28,421 447 | const double *lineVector, 2025-12-30T10:29:28,422 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2025-12-30T10:29:28,423 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2025-12-30T10:29:28,423 103 | const double lineVector[2], 2025-12-30T10:29:28,424 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2025-12-30T10:29:28,424 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:448:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-30T10:29:28,425 448 | const double *point) 2025-12-30T10:29:28,426 | ~~~~~~~~~~~~~~~^~~~~ 2025-12-30T10:29:28,426 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2025-12-30T10:29:28,427 104 | const double point[2]); 2025-12-30T10:29:28,427 | ~~~~~~~~~~~~~~^~~~~~~~ 2025-12-30T10:29:28,428 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2025-12-30T10:29:28,429 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:28,429 799 | double alpha[3]; 2025-12-30T10:29:28,430 | ^~~~~ 2025-12-30T10:29:28,485 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:19: 2025-12-30T10:29:28,486 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectLineArc’: 2025-12-30T10:29:28,487 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:285:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,487 285 | char *fnName = "intersectLineArc"; 2025-12-30T10:29:28,488 | ^~~~~~ 2025-12-30T10:29:28,489 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc: In function ‘intersectArcArc’: 2025-12-30T10:29:28,489 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelLines.inc:341:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,490 341 | char *fnName = "intersectArcArc"; 2025-12-30T10:29:28,491 | ^~~~~~ 2025-12-30T10:29:28,494 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:19, 2025-12-30T10:29:28,495 from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:21, 2025-12-30T10:29:28,495 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:12, 2025-12-30T10:29:28,496 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:20: 2025-12-30T10:29:28,496 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc: In function ‘ClosestPtPointBulge’: 2025-12-30T10:29:28,497 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:151:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,498 151 | char *fnName = "CLOSEST ON BULGE"; 2025-12-30T10:29:28,498 | ^~~~~~ 2025-12-30T10:29:28,507 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodesBoundingBoxes’: 2025-12-30T10:29:28,508 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:142:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,508 142 | const char *fnName = "intersectNodesBoundingBoxes"; 2025-12-30T10:29:28,509 | ^~~~~~ 2025-12-30T10:29:28,510 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc: In function ‘intersectNodeNode’: 2025-12-30T10:29:28,510 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:179:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,511 179 | const char *fnName = "intersectNodeNode"; 2025-12-30T10:29:28,512 | ^~~~~~ 2025-12-30T10:29:28,515 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:23: 2025-12-30T10:29:28,516 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc: In function ‘checkAndApplyConfigChanges’: 2025-12-30T10:29:28,517 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:109:13: warning: unused variable ‘newRadius’ [-Wunused-variable] 2025-12-30T10:29:28,517 109 | double newRadius = cfg->radius; 2025-12-30T10:29:28,518 | ^~~~~~~~~ 2025-12-30T10:29:28,519 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:104:13: warning: unused variable ‘oldRadius’ [-Wunused-variable] 2025-12-30T10:29:28,519 104 | double oldRadius = cfg->radius; 2025-12-30T10:29:28,520 | ^~~~~~~~~ 2025-12-30T10:29:28,521 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:100:9: warning: unused variable ‘logTag’ [-Wunused-variable] 2025-12-30T10:29:28,522 100 | char *logTag = intersectionTypeToString(it); 2025-12-30T10:29:28,522 | ^~~~~~ 2025-12-30T10:29:28,523 src/ViennaRNA/plotting/RNApuzzler/includes/handleConfigChanges.inc:61:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,524 61 | char *fnName = "checkAndApplyConfigChanges"; 2025-12-30T10:29:28,525 | ^~~~~~ 2025-12-30T10:29:28,525 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusLinearSearch’: 2025-12-30T10:29:28,526 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:84:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,527 84 | char *fnName = "shrinkLoopRadiusLinearSearch"; 2025-12-30T10:29:28,527 | ^~~~~~ 2025-12-30T10:29:28,528 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘shrinkLoopRadiusBinarySearch’: 2025-12-30T10:29:28,529 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:162:18: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,529 162 | char *fnName = "shrinkLoopRadiusBinarySearch"; 2025-12-30T10:29:28,530 | ^~~~~~ 2025-12-30T10:29:28,531 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeNode’: 2025-12-30T10:29:28,532 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:694:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,532 694 | char *fnName = "optimizeNode"; 2025-12-30T10:29:28,533 | ^~~~~~ 2025-12-30T10:29:28,533 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTreeRecursive’: 2025-12-30T10:29:28,534 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:889:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,534 889 | char *fnName = "optimizeTreeRecursive"; 2025-12-30T10:29:28,535 | ^~~~~~ 2025-12-30T10:29:28,535 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc: In function ‘optimizeTree’: 2025-12-30T10:29:28,536 src/ViennaRNA/plotting/RNApuzzler/includes/optimize.inc:943:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,536 943 | char *fnName = "optimizeTree"; 2025-12-30T10:29:28,537 | ^~~~~~ 2025-12-30T10:29:28,537 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:22, 2025-12-30T10:29:28,538 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:14: 2025-12-30T10:29:28,539 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasEquidistantIncrease’: 2025-12-30T10:29:28,539 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:53:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,540 53 | char *fnName = "CALC DELTAS EQUIDISTANT INCREASE"; 2025-12-30T10:29:28,540 | ^~~~~~ 2025-12-30T10:29:28,541 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasMaximumFirstDecrease’: 2025-12-30T10:29:28,542 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:82:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,542 82 | char *fnName = "CALC DELTAS MAXIMUM FIRST DECREASE"; 2025-12-30T10:29:28,543 | ^~~~~~ 2025-12-30T10:29:28,544 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltasNearestNeighborsFirstDecrease’: 2025-12-30T10:29:28,544 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:191:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,545 191 | char *fnName = "CALC DELTAS NEAREST NEIGHBOR FIRST DECREASE"; 2025-12-30T10:29:28,546 | ^~~~~~ 2025-12-30T10:29:28,547 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc: In function ‘calcDeltas’: 2025-12-30T10:29:28,547 src/ViennaRNA/plotting/RNApuzzler/includes/calcDeltas.inc:310:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,548 310 | char *fnName = "CALC DELTAS"; 2025-12-30T10:29:28,549 | ^~~~~~ 2025-12-30T10:29:28,549 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘fixIntersectionOfSiblings’: 2025-12-30T10:29:28,550 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:76:18: warning: unused variable ‘rightNode’ [-Wunused-variable] 2025-12-30T10:29:28,550 76 | treeNode *rightNode = getChild(tree, right); 2025-12-30T10:29:28,551 | ^~~~~~~~~ 2025-12-30T10:29:28,551 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:75:18: warning: unused variable ‘leftNode’ [-Wunused-variable] 2025-12-30T10:29:28,552 75 | treeNode *leftNode = getChild(tree, left); 2025-12-30T10:29:28,553 | ^~~~~~~~ 2025-12-30T10:29:28,553 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘handleIntersectionOfSiblings’: 2025-12-30T10:29:28,554 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:103:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,555 103 | char *fnName = "FIX INTERSECTION OF SIBLINGS"; 2025-12-30T10:29:28,555 | ^~~~~~ 2025-12-30T10:29:28,556 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc: In function ‘checkSiblings’: 2025-12-30T10:29:28,556 src/ViennaRNA/plotting/RNApuzzler/includes/handleSiblingIntersections.inc:153:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,557 153 | char *fnName = "CHECK SIBLINGS"; 2025-12-30T10:29:28,557 | ^~~~~~ 2025-12-30T10:29:28,559 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:23, 2025-12-30T10:29:28,559 from src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:15: 2025-12-30T10:29:28,560 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘pointToAngle’: 2025-12-30T10:29:28,560 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:31:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,561 31 | char *fnName = "POINT TO ANGLE"; 2025-12-30T10:29:28,562 | ^~~~~~ 2025-12-30T10:29:28,562 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfRectangleAndCircle’: 2025-12-30T10:29:28,563 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:169:14: warning: unused variable ‘staticRectExt’ [-Wunused-variable] 2025-12-30T10:29:28,563 169 | double staticRectExt[2] = { 2025-12-30T10:29:28,564 | ^~~~~~~~~~~~~ 2025-12-30T10:29:28,565 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:74:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,565 74 | char *fnName = "fixIntersectionOfCircleAndRectangle"; 2025-12-30T10:29:28,566 | ^~~~~~ 2025-12-30T10:29:28,566 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘fixIntersectionOfCircles’: 2025-12-30T10:29:28,567 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:204:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,568 204 | char *fnName = "fixIntersectionOfCircles"; 2025-12-30T10:29:28,569 | ^~~~~~ 2025-12-30T10:29:28,569 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxL’: 2025-12-30T10:29:28,570 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:310:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,571 310 | char *fnName = "getRotationAngleLxL"; 2025-12-30T10:29:28,572 | ^~~~~~ 2025-12-30T10:29:28,572 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxS’: 2025-12-30T10:29:28,573 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:349:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,573 349 | char *fnName = "getRotationAngleLxS"; 2025-12-30T10:29:28,574 | ^~~~~~ 2025-12-30T10:29:28,574 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxL’: 2025-12-30T10:29:28,575 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:382:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,576 382 | char *fnName = "getRotationAngleSxL"; 2025-12-30T10:29:28,576 | ^~~~~~ 2025-12-30T10:29:28,577 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleLxB’: 2025-12-30T10:29:28,577 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:434:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-30T10:29:28,578 434 | short intersect = intersectLoopBulges(staticLoop, mobileStem, &mobileBulgeIndex); 2025-12-30T10:29:28,579 | ^~~~~~~~~ 2025-12-30T10:29:28,580 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:413:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,580 413 | char *fnName = "getRotationAngleLxB"; 2025-12-30T10:29:28,581 | ^~~~~~ 2025-12-30T10:29:28,581 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxL’: 2025-12-30T10:29:28,582 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:489:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-30T10:29:28,582 489 | short intersect = intersectLoopBulges(mobileLoop, staticStem, &staticBulgeIndex); 2025-12-30T10:29:28,583 | ^~~~~~~~~ 2025-12-30T10:29:28,584 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:477:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,584 477 | char *fnName = "getRotationAngleBxL"; 2025-12-30T10:29:28,585 | ^~~~~~ 2025-12-30T10:29:28,585 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxS’: 2025-12-30T10:29:28,586 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:541:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,587 541 | char *fnName = "getRotationAngleSxS"; 2025-12-30T10:29:28,587 | ^~~~~~ 2025-12-30T10:29:28,588 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleSxB’: 2025-12-30T10:29:28,588 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:567:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-30T10:29:28,589 567 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2025-12-30T10:29:28,589 | ^~~~~~~~~ 2025-12-30T10:29:28,590 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:560:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,591 560 | char *fnName = "getRotationAngleSxB"; 2025-12-30T10:29:28,592 | ^~~~~~ 2025-12-30T10:29:28,592 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxS’: 2025-12-30T10:29:28,593 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:612:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-30T10:29:28,594 612 | short intersect = intersectStemBulges(staticStem, mobileStem, &mobileBulgeIndex); 2025-12-30T10:29:28,594 | ^~~~~~~~~ 2025-12-30T10:29:28,595 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:605:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,596 605 | char *fnName = "getRotationAngleBxS"; 2025-12-30T10:29:28,597 | ^~~~~~ 2025-12-30T10:29:28,597 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc: In function ‘getRotationAngleBxB’: 2025-12-30T10:29:28,598 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:660:11: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-30T10:29:28,599 660 | short intersect = intersectBulgesBulges(staticStem, 2025-12-30T10:29:28,599 | ^~~~~~~~~ 2025-12-30T10:29:28,600 src/ViennaRNA/plotting/RNApuzzler/includes/rotationAngle.inc:650:12: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,600 650 | char *fnName = "getRotationAngleBxB"; 2025-12-30T10:29:28,601 | ^~~~~~ 2025-12-30T10:29:28,602 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_getRotationSign’: 2025-12-30T10:29:28,603 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘noIntersection’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,603 64 | switch (it) { 2025-12-30T10:29:28,604 | ^~~~~~ 2025-12-30T10:29:28,605 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxL’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,605 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘LxS’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,606 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxL’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,606 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxS’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,607 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘SxB’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,608 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxS’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,608 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘BxB’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,609 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘siblings’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,609 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:64:3: warning: enumeration value ‘exterior’ not handled in switch [-Wswitch] 2025-12-30T10:29:28,610 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:44:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,610 44 | char *fnName = "getRotationSign"; 2025-12-30T10:29:28,611 | ^~~~~~ 2025-12-30T10:29:28,611 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_getRotationSign’: 2025-12-30T10:29:28,612 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:105:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,613 105 | char *fnName = "getRotationSign"; 2025-12-30T10:29:28,614 | ^~~~~~ 2025-12-30T10:29:28,614 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘getRotationSign’: 2025-12-30T10:29:28,615 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:145:10: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,616 145 | char *fnName = "getRotationSign"; 2025-12-30T10:29:28,616 | ^~~~~~ 2025-12-30T10:29:28,617 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2025-12-30T10:29:28,618 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:222:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,618 222 | char *fnName = "fixIntersectionWithAncestor"; 2025-12-30T10:29:28,619 | ^~~~~~ 2025-12-30T10:29:28,619 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘handleIntersectionWithAncestor’: 2025-12-30T10:29:28,620 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:366:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,621 366 | char *fnName = "handleIntersectionWithAncestor"; 2025-12-30T10:29:28,621 | ^~~~~~ 2025-12-30T10:29:28,622 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE3_setupExteriorBoundingBoxes’: 2025-12-30T10:29:28,623 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:498:15: warning: unused variable ‘stemSouthX’ [-Wunused-variable] 2025-12-30T10:29:28,624 498 | double stemSouthX = loopX; 2025-12-30T10:29:28,624 | ^~~~~~~~~~ 2025-12-30T10:29:28,625 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:497:15: warning: unused variable ‘stemNorthX’ [-Wunused-variable] 2025-12-30T10:29:28,626 497 | double stemNorthX = loopX; 2025-12-30T10:29:28,626 | ^~~~~~~~~~ 2025-12-30T10:29:28,627 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:482:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,627 482 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-30T10:29:28,628 | ^~~~~~ 2025-12-30T10:29:28,628 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE2_setupExteriorBoundingBoxes’: 2025-12-30T10:29:28,629 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:625:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,629 625 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-30T10:29:28,630 | ^~~~~~ 2025-12-30T10:29:28,630 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘TENTATIVE_setupExteriorBoundingBoxes’: 2025-12-30T10:29:28,631 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:715:21: warning: unused variable ‘it’ [-Wunused-variable] 2025-12-30T10:29:28,632 715 | intersectionType it = noIntersection; 2025-12-30T10:29:28,633 | ^~ 2025-12-30T10:29:28,633 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:695:22: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,634 695 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-30T10:29:28,635 | ^~~~~~ 2025-12-30T10:29:28,635 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘setupExteriorBoundingBoxes’: 2025-12-30T10:29:28,636 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:759:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,637 759 | char *fnName = "setupExteriorBoundingBoxes"; 2025-12-30T10:29:28,637 | ^~~~~~ 2025-12-30T10:29:28,638 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘checkNodeAgainstAncestors’: 2025-12-30T10:29:28,639 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:950:14: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,640 950 | char *fnName = "checkNodeAgainstAncestors"; 2025-12-30T10:29:28,640 | ^~~~~~ 2025-12-30T10:29:28,641 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc: In function ‘checkAndFixIntersections’: 2025-12-30T10:29:28,642 src/ViennaRNA/plotting/RNApuzzler/includes/resolveIntersections.inc:29:9: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,642 29 | char *fnName = "checkAndFixIntersections"; 2025-12-30T10:29:28,643 | ^~~~~~ 2025-12-30T10:29:28,644 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘checkRemainingIntersections’: 2025-12-30T10:29:28,644 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:75:16: warning: unused variable ‘fnName’ [-Wunused-variable] 2025-12-30T10:29:28,645 75 | char *fnName = "checkRemainingIntersections"; 2025-12-30T10:29:28,646 | ^~~~~~ 2025-12-30T10:29:28,646 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c: In function ‘vrna_plot_coords_puzzler_pt’: 2025-12-30T10:29:28,647 src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:505:13: warning: unused variable ‘intersect’ [-Wunused-variable] 2025-12-30T10:29:28,648 505 | short intersect = checkRemainingIntersections(myX, 2025-12-30T10:29:28,649 | ^~~~~~~~~ 2025-12-30T10:29:28,649 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2025-12-30T10:29:28,650 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2025-12-30T10:29:28,651 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:29:28,651 126 | intToMotiv(const int _int); 2025-12-30T10:29:28,652 | ^~~~~~~~~~ 2025-12-30T10:29:28,652 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:16, 2025-12-30T10:29:28,653 from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:18: 2025-12-30T10:29:28,654 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:135:1: warning: ‘printLBox’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:29:28,654 135 | printLBox(const loopBox *loop); 2025-12-30T10:29:28,655 | ^~~~~~~~~ 2025-12-30T10:29:28,655 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:139:1: warning: ‘printSBox’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:29:28,656 139 | printSBox(const stemBox *stem); 2025-12-30T10:29:28,656 | ^~~~~~~~~ 2025-12-30T10:29:28,657 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:224:1: warning: ‘printTree’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:29:28,657 224 | printTree(const treeNode *node, 2025-12-30T10:29:28,658 | ^~~~~~~~~ 2025-12-30T10:29:28,713 In file included from src/ViennaRNA/plotting/RNApuzzler/RNApuzzler.c:21: 2025-12-30T10:29:28,713 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:482:1: warning: ‘resolveExteriorChildIntersections’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,714 482 | resolveExteriorChildIntersections(treeNode *exteriorNode, 2025-12-30T10:29:28,714 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,715 src/ViennaRNA/plotting/RNApuzzler/includes/resolveExteriorChildIntersections.inc:305:1: warning: ‘resolveExteriorChildrenIntersectionAffin’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,715 305 | resolveExteriorChildrenIntersectionAffin(treeNode *exteriorNode, 2025-12-30T10:29:28,716 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,717 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:754:1: warning: ‘setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,717 754 | setupExteriorBoundingBoxes(treeNode *exterior, 2025-12-30T10:29:28,718 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,719 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:690:1: warning: ‘TENTATIVE_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,719 690 | TENTATIVE_setupExteriorBoundingBoxes(treeNode *exterior, 2025-12-30T10:29:28,720 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,721 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:620:1: warning: ‘TENTATIVE2_setupExteriorBoundingBoxes’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,721 620 | TENTATIVE2_setupExteriorBoundingBoxes(treeNode *exterior, 2025-12-30T10:29:28,722 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,722 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:142:1: warning: ‘getRotationSign’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,723 142 | getRotationSign(const treeNode **const path, 2025-12-30T10:29:28,724 | ^~~~~~~~~~~~~~~ 2025-12-30T10:29:28,725 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:40:1: warning: ‘TENTATIVE3_getRotationSign’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,726 40 | TENTATIVE3_getRotationSign(treeNode **const path, 2025-12-30T10:29:28,727 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,727 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelTreeNodes.inc:111:1: warning: ‘checkBounds’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,728 111 | checkBounds(const double l1, 2025-12-30T10:29:28,728 | ^~~~~~~~~~~ 2025-12-30T10:29:28,729 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:471:1: warning: ‘TestLoopBulge’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,730 471 | TestLoopBulge(const double c[2], 2025-12-30T10:29:28,730 | ^~~~~~~~~~~~~ 2025-12-30T10:29:28,731 src/ViennaRNA/plotting/RNApuzzler/includes/intersectLevelBoundingBoxes.inc:207:1: warning: ‘ClosestPtPointTriangle’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,731 207 | ClosestPtPointTriangle(const double p[2], 2025-12-30T10:29:28,732 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,732 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1056:1: warning: ‘getChildNode’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,733 1056 | getChildNode(treeNode *tree, 2025-12-30T10:29:28,734 | ^~~~~~~~~~~~ 2025-12-30T10:29:28,734 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:1038:1: warning: ‘getStemCenter’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,735 1038 | getStemCenter(const treeNode *node, 2025-12-30T10:29:28,735 | ^~~~~~~~~~~~~ 2025-12-30T10:29:28,736 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:569:1: warning: ‘getExterior’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,736 569 | getExterior(treeNode *node) 2025-12-30T10:29:28,737 | ^~~~~~~~~~~ 2025-12-30T10:29:28,737 src/ViennaRNA/plotting/RNApuzzler/includes/configtree.inc:537:1: warning: ‘getPairedAngle’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,738 537 | getPairedAngle(const treeNode *node) 2025-12-30T10:29:28,739 | ^~~~~~~~~~~~~~ 2025-12-30T10:29:28,740 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:235:1: warning: ‘rotateStemBox’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,740 235 | rotateStemBox(stemBox *box, 2025-12-30T10:29:28,741 | ^~~~~~~~~~~~~ 2025-12-30T10:29:28,742 src/ViennaRNA/plotting/RNApuzzler/includes/boundingBoxes.inc:203:1: warning: ‘rotateLoopBox’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,743 203 | rotateLoopBox(loopBox *box, 2025-12-30T10:29:28,743 | ^~~~~~~~~~~~~ 2025-12-30T10:29:28,744 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,745 243 | getArcAngleDegree(const config *cfg, 2025-12-30T10:29:28,745 | ^~~~~~~~~~~~~~~~~ 2025-12-30T10:29:28,746 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,747 216 | cfgPrintConfig(config *cfg) 2025-12-30T10:29:28,747 | ^~~~~~~~~~~~~~ 2025-12-30T10:29:28,748 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,748 506 | normalizeAngle(const double angle, 2025-12-30T10:29:28,749 | ^~~~~~~~~~~~~~ 2025-12-30T10:29:28,750 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2025-12-30T10:29:28,750 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2025-12-30T10:29:28,751 116 | angleToDistance(const double radius, 2025-12-30T10:29:28,752 | ^~~~~~~~~~~~~~~ 2025-12-30T10:29:32,908 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc: In function ‘fixIntersectionWithAncestor’: 2025-12-30T10:29:32,908 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:255:12: warning: ‘internalChildAngle’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:32,909 255 | double diffToStraight = MATH_PI - internalChildAngle; 2025-12-30T10:29:32,910 | ^~~~~~~~~~~~~~ 2025-12-30T10:29:32,910 src/ViennaRNA/plotting/RNApuzzler/includes/handleAncestorIntersections.inc:228:10: note: ‘internalChildAngle’ was declared here 2025-12-30T10:29:32,911 228 | double internalChildAngle; 2025-12-30T10:29:32,912 | ^~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,500 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/RNApuzzler/RNAturtle.o -fopenmp 2025-12-30T10:29:34,670 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:12, 2025-12-30T10:29:34,671 from src/ViennaRNA/plotting/RNApuzzler/RNAturtle.c:15: 2025-12-30T10:29:34,671 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:40: warning: argument 1 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-30T10:29:34,672 446 | isToTheRightPointVector(const double *lineStart, 2025-12-30T10:29:34,673 | ~~~~~~~~~~~~~~~^~~~~~~~~ 2025-12-30T10:29:34,674 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:102:39: note: previously declared as an array ‘const double[2]’ 2025-12-30T10:29:34,674 102 | isToTheRightPointVector(const double lineStart[2], 2025-12-30T10:29:34,675 | ~~~~~~~~~~~~~~^~~~~~~~~~~~ 2025-12-30T10:29:34,676 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:447:40: warning: argument 2 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-30T10:29:34,676 447 | const double *lineVector, 2025-12-30T10:29:34,677 | ~~~~~~~~~~~~~~~^~~~~~~~~~ 2025-12-30T10:29:34,678 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:103:39: note: previously declared as an array ‘const double[2]’ 2025-12-30T10:29:34,678 103 | const double lineVector[2], 2025-12-30T10:29:34,679 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ 2025-12-30T10:29:34,680 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:448:40: warning: argument 3 of type ‘const double *’ declared as a pointer [-Warray-parameter=] 2025-12-30T10:29:34,681 448 | const double *point) 2025-12-30T10:29:34,681 | ~~~~~~~~~~~~~~~^~~~~ 2025-12-30T10:29:34,682 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:104:39: note: previously declared as an array ‘const double[2]’ 2025-12-30T10:29:34,682 104 | const double point[2]); 2025-12-30T10:29:34,683 | ~~~~~~~~~~~~~~^~~~~~~~ 2025-12-30T10:29:34,684 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc: In function ‘circle’: 2025-12-30T10:29:34,684 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:799:10: warning: variable ‘alpha’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:34,685 799 | double alpha[3]; 2025-12-30T10:29:34,686 | ^~~~~ 2025-12-30T10:29:34,711 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/coordinates.inc:13: 2025-12-30T10:29:34,711 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc: At top level: 2025-12-30T10:29:34,712 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:126:1: warning: ‘intToMotiv’ declared ‘static’ but never defined [-Wunused-function] 2025-12-30T10:29:34,713 126 | intToMotiv(const int _int); 2025-12-30T10:29:34,714 | ^~~~~~~~~~ 2025-12-30T10:29:34,728 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:705:1: warning: ‘cfgIsValid’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,728 705 | cfgIsValid(config *cfg, 2025-12-30T10:29:34,729 | ^~~~~~~~~~ 2025-12-30T10:29:34,729 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:648:1: warning: ‘cfgApplyChanges’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,730 648 | cfgApplyChanges(config *cfg, 2025-12-30T10:29:34,730 | ^~~~~~~~~~~~~~~ 2025-12-30T10:29:34,731 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:243:1: warning: ‘getArcAngleDegree’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,732 243 | getArcAngleDegree(const config *cfg, 2025-12-30T10:29:34,732 | ^~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,733 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:216:1: warning: ‘cfgPrintConfig’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,733 216 | cfgPrintConfig(config *cfg) 2025-12-30T10:29:34,734 | ^~~~~~~~~~~~~~ 2025-12-30T10:29:34,734 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:207:1: warning: ‘cfgFreeConfig’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,735 207 | cfgFreeConfig(config *cfg) 2025-12-30T10:29:34,735 | ^~~~~~~~~~~~~ 2025-12-30T10:29:34,736 src/ViennaRNA/plotting/RNApuzzler/includes/drawingconfig.inc:184:1: warning: ‘cfgCloneConfig’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,737 184 | cfgCloneConfig(const config *cfg) 2025-12-30T10:29:34,737 | ^~~~~~~~~~~~~~ 2025-12-30T10:29:34,738 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:764:1: warning: ‘normal’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,739 764 | normal(const double v[2], 2025-12-30T10:29:34,739 | ^~~~~~ 2025-12-30T10:29:34,740 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:723:1: warning: ‘getCutPointsOfCircleAndLine’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,741 723 | getCutPointsOfCircleAndLine(const double *center, 2025-12-30T10:29:34,741 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,742 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:608:1: warning: ‘getCutPointsOfCircles’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,743 608 | getCutPointsOfCircles(const double *c1, 2025-12-30T10:29:34,743 | ^~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,744 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:568:1: warning: ‘translatePointByVector’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,745 568 | translatePointByVector(const double *point, 2025-12-30T10:29:34,745 | ^~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,746 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:555:1: warning: ‘rotateVectorByAngle’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,747 555 | rotateVectorByAngle(const double *vector, 2025-12-30T10:29:34,747 | ^~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,748 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:506:1: warning: ‘normalizeAngle’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,749 506 | normalizeAngle(const double angle, 2025-12-30T10:29:34,750 | ^~~~~~~~~~~~~~ 2025-12-30T10:29:34,750 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:490:1: warning: ‘anglePtPtPt2D’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,751 490 | anglePtPtPt2D(const double *p1, 2025-12-30T10:29:34,752 | ^~~~~~~~~~~~~ 2025-12-30T10:29:34,753 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:446:1: warning: ‘isToTheRightPointVector’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,753 446 | isToTheRightPointVector(const double *lineStart, 2025-12-30T10:29:34,754 | ^~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,755 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:359:1: warning: ‘vectorLength2DSquared’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,755 359 | vectorLength2DSquared(const double vector[2]) 2025-12-30T10:29:34,756 | ^~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:34,756 src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:342:1: warning: ‘toRad’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,757 342 | toRad(double angle) 2025-12-30T10:29:34,758 | ^~~~~ 2025-12-30T10:29:34,758 In file included from src/ViennaRNA/plotting/RNApuzzler/includes/vector_math.inc:14: 2025-12-30T10:29:34,759 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:116:1: warning: ‘angleToDistance’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,759 116 | angleToDistance(const double radius, 2025-12-30T10:29:34,760 | ^~~~~~~~~~~~~~~ 2025-12-30T10:29:34,760 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:108:1: warning: ‘distanceToAngle’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,761 108 | distanceToAngle(const double radius, 2025-12-30T10:29:34,761 | ^~~~~~~~~~~~~~~ 2025-12-30T10:29:34,762 src/ViennaRNA/plotting/RNApuzzler/includes/definitions.inc:62:1: warning: ‘bubblesort’ defined but not used [-Wunused-function] 2025-12-30T10:29:34,762 62 | bubblesort(const int numValues, 2025-12-30T10:29:34,763 | ^~~~~~~~~~ 2025-12-30T10:29:35,730 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/alignments.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/alignments.o -fopenmp 2025-12-30T10:29:36,093 src/ViennaRNA/plotting/alignments.c: In function ‘vrna_file_PS_aln_opt’: 2025-12-30T10:29:36,093 src/ViennaRNA/plotting/alignments.c:176:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:29:36,094 176 | columnWidth = (options.columns == 0) ? length : options.columns; 2025-12-30T10:29:36,095 | ^~~~~~ 2025-12-30T10:29:36,095 src/ViennaRNA/plotting/alignments.c:300:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:36,096 300 | for (i = options.start; i <= options.end; i++) { 2025-12-30T10:29:36,097 | ^~ 2025-12-30T10:29:36,097 src/ViennaRNA/plotting/alignments.c:302:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:36,098 302 | if ((j > i) && (j <= options.end)) { 2025-12-30T10:29:36,099 | ^~ 2025-12-30T10:29:36,100 src/ViennaRNA/plotting/alignments.c:387:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:36,100 387 | if (length - currPos < max_len) 2025-12-30T10:29:36,101 | ^ 2025-12-30T10:29:36,102 src/ViennaRNA/plotting/alignments.c:394:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:29:36,102 394 | for (j = 0; j < (currPos + strlen(tmpBuffer)); j++) 2025-12-30T10:29:36,103 | ^ 2025-12-30T10:29:36,114 In file included from src/ViennaRNA/plotting/alignments.c:27: 2025-12-30T10:29:36,115 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2025-12-30T10:29:36,115 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2025-12-30T10:29:36,116 151 | print_PS_coords(FILE *fh, 2025-12-30T10:29:36,117 | ^~~~~~~~~~~~~~~ 2025-12-30T10:29:36,117 src/ViennaRNA/plotting/ps_helpers.inc:131:1: warning: ‘print_PS_sequence’ defined but not used [-Wunused-function] 2025-12-30T10:29:36,118 131 | print_PS_sequence(FILE *fh, 2025-12-30T10:29:36,118 | ^~~~~~~~~~~~~~~~~ 2025-12-30T10:29:36,700 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/eps.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/eps.o -fopenmp 2025-12-30T10:29:37,068 src/ViennaRNA/plotting/eps.c: In function ‘rnaplot_EPS’: 2025-12-30T10:29:37,069 src/ViennaRNA/plotting/eps.c:266:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:37,070 266 | for (i = 0; i < length; i++) { 2025-12-30T10:29:37,070 | ^ 2025-12-30T10:29:37,071 src/ViennaRNA/plotting/eps.c:282:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:37,072 282 | for (i = 0; i < length; i++) 2025-12-30T10:29:37,072 | ^ 2025-12-30T10:29:37,073 src/ViennaRNA/plotting/eps.c:294:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:37,074 294 | for (i = 1; i <= length; i++) 2025-12-30T10:29:37,074 | ^~ 2025-12-30T10:29:37,075 src/ViennaRNA/plotting/eps.c:310:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:37,076 310 | for (k = 0; k < Lg; k++) { 2025-12-30T10:29:37,077 | ^ 2025-12-30T10:29:37,077 src/ViennaRNA/plotting/eps.c:210:18: warning: unused variable ‘Y’ [-Wunused-variable] 2025-12-30T10:29:37,078 210 | float *X, *Y; 2025-12-30T10:29:37,079 | ^ 2025-12-30T10:29:37,079 src/ViennaRNA/plotting/eps.c:210:14: warning: unused variable ‘X’ [-Wunused-variable] 2025-12-30T10:29:37,080 210 | float *X, *Y; 2025-12-30T10:29:37,081 | ^ 2025-12-30T10:29:37,081 src/ViennaRNA/plotting/eps.c:206:31: warning: unused variable ‘ymax’ [-Wunused-variable] 2025-12-30T10:29:37,082 206 | float xmin, xmax, ymin, ymax; 2025-12-30T10:29:37,082 | ^~~~ 2025-12-30T10:29:37,083 src/ViennaRNA/plotting/eps.c:206:25: warning: unused variable ‘ymin’ [-Wunused-variable] 2025-12-30T10:29:37,084 206 | float xmin, xmax, ymin, ymax; 2025-12-30T10:29:37,084 | ^~~~ 2025-12-30T10:29:37,085 src/ViennaRNA/plotting/eps.c:206:19: warning: unused variable ‘xmax’ [-Wunused-variable] 2025-12-30T10:29:37,086 206 | float xmin, xmax, ymin, ymax; 2025-12-30T10:29:37,086 | ^~~~ 2025-12-30T10:29:37,087 src/ViennaRNA/plotting/eps.c:206:13: warning: unused variable ‘xmin’ [-Wunused-variable] 2025-12-30T10:29:37,088 206 | float xmin, xmax, ymin, ymax; 2025-12-30T10:29:37,089 | ^~~~ 2025-12-30T10:29:37,091 src/ViennaRNA/plotting/eps.c: In function ‘PS_rna_plot_snoop_a’: 2025-12-30T10:29:37,091 src/ViennaRNA/plotting/eps.c:604:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:29:37,092 604 | if (cut_point > 0 && cut_point <= strlen(string)) 2025-12-30T10:29:37,093 | ^~ 2025-12-30T10:29:37,909 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/gml.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/gml.o -fopenmp 2025-12-30T10:29:38,135 src/ViennaRNA/plotting/gml.c: In function ‘rnaplot_gml’: 2025-12-30T10:29:38,136 src/ViennaRNA/plotting/gml.c:162:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:38,138 162 | if (pt[i] > i) 2025-12-30T10:29:38,138 | ^ 2025-12-30T10:29:38,283 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/layouts.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/layouts.o -fopenmp 2025-12-30T10:29:38,513 src/ViennaRNA/plotting/layouts.c: In function ‘simple_xy_coordinates’: 2025-12-30T10:29:38,514 src/ViennaRNA/plotting/layouts.c:557:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:38,515 557 | int ret, n; 2025-12-30T10:29:38,516 | ^~~ 2025-12-30T10:29:38,517 src/ViennaRNA/plotting/layouts.c: In function ‘simple_circplot_coordinates’: 2025-12-30T10:29:38,518 src/ViennaRNA/plotting/layouts.c:580:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:38,519 580 | int ret, n; 2025-12-30T10:29:38,519 | ^~~ 2025-12-30T10:29:39,047 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/naview/naview.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/naview/naview.o -fopenmp 2025-12-30T10:29:39,785 src/ViennaRNA/plotting/naview/naview.c: In function ‘construct_circle_segment’: 2025-12-30T10:29:39,786 src/ViennaRNA/plotting/naview/naview.c:1112:36: warning: ‘angleinc’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:39,787 1112 | bases[i].x = nrx + rr*cos(a+j*angleinc); 2025-12-30T10:29:39,787 | ~^~~~~~~~~ 2025-12-30T10:29:39,788 src/ViennaRNA/plotting/naview/naview.c:1077:21: note: ‘angleinc’ was declared here 2025-12-30T10:29:39,789 1077 | double dx,dy,rr,h,angleinc,midx,midy,xn,yn,nrx,nry,mx,my,a; 2025-12-30T10:29:39,789 | ^~~~~~~~ 2025-12-30T10:29:39,790 src/ViennaRNA/plotting/naview/naview.c:1103:19: warning: ‘h’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:39,791 1103 | nrx = midx + h*xn; 2025-12-30T10:29:39,791 | ~^~~ 2025-12-30T10:29:39,792 src/ViennaRNA/plotting/naview/naview.c:1077:19: note: ‘h’ was declared here 2025-12-30T10:29:39,793 1077 | double dx,dy,rr,h,angleinc,midx,midy,xn,yn,nrx,nry,mx,my,a; 2025-12-30T10:29:39,793 | ^ 2025-12-30T10:29:40,157 In function ‘determine_radius’, 2025-12-30T10:29:40,157 inlined from ‘traverse_loop’ at src/ViennaRNA/plotting/naview/naview.c:572:3: 2025-12-30T10:29:40,158 src/ViennaRNA/plotting/naview/naview.c:966:22: warning: ‘imindit’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:40,158 966 | lp->connections[imindit]->extruded = true; 2025-12-30T10:29:40,159 | ^ 2025-12-30T10:29:40,159 src/ViennaRNA/plotting/naview/naview.c: In function ‘traverse_loop’: 2025-12-30T10:29:40,160 src/ViennaRNA/plotting/naview/naview.c:931:21: note: ‘imindit’ was declared here 2025-12-30T10:29:40,160 931 | int i,j,end,start,imindit; 2025-12-30T10:29:40,161 | ^~~~~~~ 2025-12-30T10:29:40,161 src/ViennaRNA/plotting/naview/naview.c:632:27: warning: ‘imaxloop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:29:40,162 632 | cp = lp->connections[icend]; 2025-12-30T10:29:40,162 | ^ 2025-12-30T10:29:40,163 src/ViennaRNA/plotting/naview/naview.c:543:7: note: ‘imaxloop’ was declared here 2025-12-30T10:29:40,164 543 | int imaxloop; 2025-12-30T10:29:40,164 | ^~~~~~~~ 2025-12-30T10:29:40,898 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/plot_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/plot_utils.o -fopenmp 2025-12-30T10:29:41,126 src/ViennaRNA/plotting/plot_utils.c: In function ‘vrna_annotate_covar_pairs’: 2025-12-30T10:29:41,127 src/ViennaRNA/plotting/plot_utils.c:280:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:41,128 280 | for (s = 0; s < n_seq; s++) { 2025-12-30T10:29:41,129 | ^ 2025-12-30T10:29:41,520 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/probabilities.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/probabilities.o -fopenmp 2025-12-30T10:29:41,880 src/ViennaRNA/plotting/probabilities.c: In function ‘vrna_plot_dp_EPS’: 2025-12-30T10:29:41,881 src/ViennaRNA/plotting/probabilities.c:311:62: warning: variable ‘linright_num’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:41,882 311 | linbottom_size, linleft_num, linleft_size, linright_num, 2025-12-30T10:29:41,882 | ^~~~~~~~~~~~ 2025-12-30T10:29:41,883 src/ViennaRNA/plotting/probabilities.c:311:35: warning: variable ‘linleft_num’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:41,884 311 | linbottom_size, linleft_num, linleft_size, linright_num, 2025-12-30T10:29:41,884 | ^~~~~~~~~~~ 2025-12-30T10:29:41,885 src/ViennaRNA/plotting/probabilities.c:310:47: warning: variable ‘linbottom_num’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:41,886 310 | int i, lintop_num, lintop_size, linbottom_num, 2025-12-30T10:29:41,887 | ^~~~~~~~~~~~~ 2025-12-30T10:29:41,888 src/ViennaRNA/plotting/probabilities.c:310:22: warning: variable ‘lintop_num’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:41,888 310 | int i, lintop_num, lintop_size, linbottom_num, 2025-12-30T10:29:41,889 | ^~~~~~~~~~ 2025-12-30T10:29:41,894 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_accessibility’: 2025-12-30T10:29:41,895 src/ViennaRNA/plotting/probabilities.c:880:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:41,896 880 | for(i = 0; i < length; i++){ 2025-12-30T10:29:41,896 | ^ 2025-12-30T10:29:41,897 src/ViennaRNA/plotting/probabilities.c: In function ‘plist_to_ud_motif_prob’: 2025-12-30T10:29:41,897 src/ViennaRNA/plotting/probabilities.c:913:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:41,898 913 | for(i = 0; i < actual_length; i++, actual_pos++){ 2025-12-30T10:29:41,898 | ^ 2025-12-30T10:29:41,921 In file included from src/ViennaRNA/plotting/probabilities.c:28: 2025-12-30T10:29:41,922 src/ViennaRNA/plotting/ps_helpers.inc: At top level: 2025-12-30T10:29:41,923 src/ViennaRNA/plotting/ps_helpers.inc:151:1: warning: ‘print_PS_coords’ defined but not used [-Wunused-function] 2025-12-30T10:29:41,923 151 | print_PS_coords(FILE *fh, 2025-12-30T10:29:41,924 | ^~~~~~~~~~~~~~~ 2025-12-30T10:29:43,154 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/ssv.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/ssv.o -fopenmp 2025-12-30T10:29:43,381 src/ViennaRNA/plotting/ssv.c: In function ‘rnaplot_ssv’: 2025-12-30T10:29:43,382 src/ViennaRNA/plotting/ssv.c:188:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:43,383 188 | if (pt[i] > i) 2025-12-30T10:29:43,384 | ^ 2025-12-30T10:29:43,385 src/ViennaRNA/plotting/ssv.c:112:35: warning: variable ‘ymax’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:43,385 112 | float xmin, xmax, ymin, ymax; 2025-12-30T10:29:43,386 | ^~~~ 2025-12-30T10:29:43,387 src/ViennaRNA/plotting/ssv.c:112:23: warning: variable ‘xmax’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:43,387 112 | float xmin, xmax, ymin, ymax; 2025-12-30T10:29:43,388 | ^~~~ 2025-12-30T10:29:43,541 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/structures.o -fopenmp 2025-12-30T10:29:43,770 src/ViennaRNA/plotting/structures.c: In function ‘vrna_plot_structure’: 2025-12-30T10:29:43,771 src/ViennaRNA/plotting/structures.c:68:7: warning: unused variable ‘no_aux_data’ [-Wunused-variable] 2025-12-30T10:29:43,773 68 | int no_aux_data = 0; 2025-12-30T10:29:43,774 | ^~~~~~~~~~~ 2025-12-30T10:29:43,836 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/svg.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/svg.o -fopenmp 2025-12-30T10:29:44,068 src/ViennaRNA/plotting/svg.c: In function ‘rnaplot_SVG’: 2025-12-30T10:29:44,069 src/ViennaRNA/plotting/svg.c:231:21: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-30T10:29:44,070 231 | if (i + 1 < pt[i + 1]) { 2025-12-30T10:29:44,070 | ^ 2025-12-30T10:29:44,071 src/ViennaRNA/plotting/svg.c:294:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:44,071 294 | for (int j = 0; j < n - 1; j++) { 2025-12-30T10:29:44,072 | ^ 2025-12-30T10:29:44,073 src/ViennaRNA/plotting/svg.c: In function ‘print_SVG_footer_data’: 2025-12-30T10:29:44,073 src/ViennaRNA/plotting/svg.c:387:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:44,074 387 | if (pt[i] > i) { 2025-12-30T10:29:44,075 | ^ 2025-12-30T10:29:44,075 src/ViennaRNA/plotting/svg.c:394:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:29:44,076 394 | if (pt[i] > i) 2025-12-30T10:29:44,076 | ^ 2025-12-30T10:29:44,084 src/ViennaRNA/plotting/svg.c: At top level: 2025-12-30T10:29:44,085 src/ViennaRNA/plotting/svg.c:356:1: warning: ‘print_SVG_footer’ defined but not used [-Wunused-function] 2025-12-30T10:29:44,086 356 | print_SVG_footer(FILE *fh) 2025-12-30T10:29:44,086 | ^~~~~~~~~~~~~~~~ 2025-12-30T10:29:44,511 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/plotting/xrna.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/plotting/xrna.o -fopenmp 2025-12-30T10:29:44,848 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probabilities/equilibrium_probs.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probabilities/equilibrium_probs.o -fopenmp 2025-12-30T10:29:45,201 src/ViennaRNA/probabilities/equilibrium_probs.c: In function ‘multistrand_contrib’: 2025-12-30T10:29:45,203 src/ViennaRNA/probabilities/equilibrium_probs.c:2330:27: warning: variable ‘sc_split’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:29:45,204 2330 | sc_ext_exp_split sc_split; 2025-12-30T10:29:45,204 | ^~~~~~~~ 2025-12-30T10:29:56,939 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probabilities/probs_structures.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probabilities/probs_structures.o -fopenmp 2025-12-30T10:29:57,520 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/SHAPE.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/SHAPE.o -fopenmp 2025-12-30T10:29:58,100 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/probing.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/probing.o -fopenmp 2025-12-30T10:29:58,383 src/ViennaRNA/probing/probing.c:817:1: warning: ‘get_cb_up_options_free_default’ defined but not used [-Wunused-function] 2025-12-30T10:29:58,384 817 | get_cb_up_options_free_default(void) 2025-12-30T10:29:58,385 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:58,385 src/ViennaRNA/probing/probing.c:810:1: warning: ‘get_cb_up_options_default’ defined but not used [-Wunused-function] 2025-12-30T10:29:58,386 810 | get_cb_up_options_default(void) 2025-12-30T10:29:58,387 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2025-12-30T10:29:58,387 src/ViennaRNA/probing/probing.c:803:1: warning: ‘get_cb_up_default’ defined but not used [-Wunused-function] 2025-12-30T10:29:58,388 803 | get_cb_up_default(void) 2025-12-30T10:29:58,389 | ^~~~~~~~~~~~~~~~~ 2025-12-30T10:29:59,446 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_chain.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_chain.o -fopenmp 2025-12-30T10:29:59,891 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_deigan.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_deigan.o -fopenmp 2025-12-30T10:30:00,446 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_eddy.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_eddy.o -fopenmp 2025-12-30T10:30:02,503 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_nlogp.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_nlogp.o -fopenmp 2025-12-30T10:30:03,952 src/ViennaRNA/probing/strategy_nlogp.c: In function ‘vrna_probing_strategy_nlogp’: 2025-12-30T10:30:03,953 src/ViennaRNA/probing/strategy_nlogp.c:66:37: warning: unused variable ‘t’ [-Wunused-variable] 2025-12-30T10:30:03,954 66 | double *pseudo_energies, t; 2025-12-30T10:30:03,954 | ^ 2025-12-30T10:30:03,955 src/ViennaRNA/probing/strategy_nlogp.c: In function ‘vrna_probing_strategy_nlogp_options’: 2025-12-30T10:30:03,955 src/ViennaRNA/probing/strategy_nlogp.c:136:19: warning: unused variable ‘ptr_size’ [-Wunused-variable] 2025-12-30T10:30:03,956 136 | size_t ptr_size; 2025-12-30T10:30:03,956 | ^~~~~~~~ 2025-12-30T10:30:03,957 src/ViennaRNA/probing/strategy_nlogp.c:135:20: warning: unused variable ‘ptr_transformed’ [-Wunused-variable] 2025-12-30T10:30:03,957 135 | double *ptr_transformed; 2025-12-30T10:30:03,958 | ^~~~~~~~~~~~~~~ 2025-12-30T10:30:03,959 src/ViennaRNA/probing/strategy_nlogp.c:134:20: warning: unused variable ‘ptr’ [-Wunused-variable] 2025-12-30T10:30:03,959 134 | const double *ptr; 2025-12-30T10:30:03,960 | ^~~ 2025-12-30T10:30:04,289 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/probing/strategy_zarringhalam.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/probing/strategy_zarringhalam.o -fopenmp 2025-12-30T10:30:05,090 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sampling/boltzmann_sampling.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sampling/boltzmann_sampling.o -fopenmp 2025-12-30T10:30:05,376 In file included from src/ViennaRNA/sampling/boltzmann_sampling.c:37: 2025-12-30T10:30:05,376 src/ViennaRNA/sampling/data_structures_nonred.inc: In function ‘free_all_nrll’: 2025-12-30T10:30:05,377 src/ViennaRNA/sampling/data_structures_nonred.inc:1159:7: warning: unused variable ‘i’ [-Wunused-variable] 2025-12-30T10:30:05,378 1159 | int i; 2025-12-30T10:30:05,379 | ^ 2025-12-30T10:30:11,435 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sampling/bs_wrappers.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sampling/bs_wrappers.o -fopenmp 2025-12-30T10:30:11,826 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/search/BoyerMoore.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/search/BoyerMoore.o -fopenmp 2025-12-30T10:30:12,258 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/alphabet.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/alphabet.o -fopenmp 2025-12-30T10:30:12,991 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/msa.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/msa.o -fopenmp 2025-12-30T10:30:13,230 src/ViennaRNA/sequences/msa.c: In function ‘vrna_pscore’: 2025-12-30T10:30:13,231 src/ViennaRNA/sequences/msa.c:222:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:30:13,232 222 | if ((u + 2) <= max_span) { 2025-12-30T10:30:13,232 | ^~ 2025-12-30T10:30:13,240 src/ViennaRNA/sequences/msa.c: In function ‘vrna_aln_conservation_struct’: 2025-12-30T10:30:13,241 src/ViennaRNA/sequences/msa.c:554:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-30T10:30:13,241 554 | if (i < pt[i]) { 2025-12-30T10:30:13,242 | ^ 2025-12-30T10:30:13,250 src/ViennaRNA/sequences/msa.c: In function ‘read_clustal’: 2025-12-30T10:30:13,251 src/ViennaRNA/sequences/msa.c:896:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:30:13,252 896 | for (i = 0; i < strlen(seq); i++) { 2025-12-30T10:30:13,252 | ^ 2025-12-30T10:30:13,255 src/ViennaRNA/sequences/msa.c:946:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:30:13,256 946 | if (strlen(AlignedSeqs[nn]) != n) { 2025-12-30T10:30:13,256 | ^~ 2025-12-30T10:30:15,001 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/seq_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/seq_utils.o -fopenmp 2025-12-30T10:30:15,251 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/sequences/sequence.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/sequences/sequence.o -fopenmp 2025-12-30T10:30:16,147 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/snofold.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snofold.o -fopenmp 2025-12-30T10:30:16,404 src/ViennaRNA/snofold.c: In function ‘snofold’: 2025-12-30T10:30:16,405 src/ViennaRNA/snofold.c:369:30: warning: variable ‘bonus_cnt’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,405 369 | int length, energy, bonus, bonus_cnt, s; 2025-12-30T10:30:16,406 | ^~~~~~~~~ 2025-12-30T10:30:16,407 src/ViennaRNA/snofold.c:369:23: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,407 369 | int length, energy, bonus, bonus_cnt, s; 2025-12-30T10:30:16,408 | ^~~~~ 2025-12-30T10:30:16,412 src/ViennaRNA/snofold.c: In function ‘alisnofold’: 2025-12-30T10:30:16,412 src/ViennaRNA/snofold.c:593:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:30:16,413 593 | if (strlen(strings[s]) != length) 2025-12-30T10:30:16,414 | ^~ 2025-12-30T10:30:16,418 src/ViennaRNA/snofold.c: In function ‘alifill_arrays’: 2025-12-30T10:30:16,419 src/ViennaRNA/snofold.c:625:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,419 625 | int bonus, n_seq, s; 2025-12-30T10:30:16,420 | ^~~~~ 2025-12-30T10:30:16,423 src/ViennaRNA/snofold.c: In function ‘alibacktrack’: 2025-12-30T10:30:16,423 src/ViennaRNA/snofold.c:789:34: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,424 789 | int ml, ss, cij, traced, i1, j1, p, q; 2025-12-30T10:30:16,424 | ^~ 2025-12-30T10:30:16,425 src/ViennaRNA/snofold.c:789:30: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,426 789 | int ml, ss, cij, traced, i1, j1, p, q; 2025-12-30T10:30:16,426 | ^~ 2025-12-30T10:30:16,427 src/ViennaRNA/snofold.c:776:7: warning: variable ‘bonus’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,428 776 | int bonus, n_seq, *type; 2025-12-30T10:30:16,428 | ^~~~~ 2025-12-30T10:30:16,435 src/ViennaRNA/snofold.c: In function ‘backtrack’: 2025-12-30T10:30:16,436 src/ViennaRNA/snofold.c:1155:26: warning: variable ‘j1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,437 1155 | int cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2025-12-30T10:30:16,437 | ^~ 2025-12-30T10:30:16,438 src/ViennaRNA/snofold.c:1155:22: warning: variable ‘i1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:16,438 1155 | int cij, traced, i1, j1, /*d3, d5, mm,*/ p, q; 2025-12-30T10:30:16,439 | ^~ 2025-12-30T10:30:16,440 src/ViennaRNA/snofold.c: In function ‘alisnobacktrack_fold_from_pair’: 2025-12-30T10:30:16,441 src/ViennaRNA/snofold.c:1313:28: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2025-12-30T10:30:16,441 1313 | if (strlen(strings[s]) != length) 2025-12-30T10:30:16,442 | ^~ 2025-12-30T10:30:16,472 src/ViennaRNA/snofold.c: At top level: 2025-12-30T10:30:16,472 src/ViennaRNA/snofold.c:159:15: warning: ‘alpha’ defined but not used [-Wunused-variable] 2025-12-30T10:30:16,473 159 | PRIVATE char alpha[] = "ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"; 2025-12-30T10:30:16,474 | ^~~~~ 2025-12-30T10:30:18,711 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/snoop.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/snoop.o -fopenmp 2025-12-30T10:30:18,984 src/ViennaRNA/snoop.c: In function ‘alisnoopfold’: 2025-12-30T10:30:18,985 src/ViennaRNA/snoop.c:253:22: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:18,986 253 | int i, j, E, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-30T10:30:18,986 | ^~ 2025-12-30T10:30:18,997 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack’: 2025-12-30T10:30:18,998 src/ViennaRNA/snoop.c:847:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:18,998 847 | int min_k, max_k; 2025-12-30T10:30:18,999 | ^~~~~ 2025-12-30T10:30:18,999 src/ViennaRNA/snoop.c:847:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,000 847 | int min_k, max_k; 2025-12-30T10:30:19,001 | ^~~~~ 2025-12-30T10:30:19,015 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt’: 2025-12-30T10:30:19,016 src/ViennaRNA/snoop.c:1152:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,017 1152 | int Loop_E; 2025-12-30T10:30:19,017 | ^~~~~~ 2025-12-30T10:30:19,018 src/ViennaRNA/snoop.c:1150:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,018 1150 | int Loop_D; 2025-12-30T10:30:19,019 | ^~~~~~ 2025-12-30T10:30:19,020 src/ViennaRNA/snoop.c:1149:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,020 1149 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,021 | ^~~~~~~~~ 2025-12-30T10:30:19,021 src/ViennaRNA/snoop.c:1149:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,022 1149 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,022 | ^~~~~~~~~ 2025-12-30T10:30:19,023 src/ViennaRNA/snoop.c:1123:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,023 1123 | int max_pos; 2025-12-30T10:30:19,024 | ^~~~~~~ 2025-12-30T10:30:19,028 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list’: 2025-12-30T10:30:19,029 src/ViennaRNA/snoop.c:1459:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,030 1459 | int min_k, max_k; 2025-12-30T10:30:19,031 | ^~~~~ 2025-12-30T10:30:19,031 src/ViennaRNA/snoop.c:1459:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,032 1459 | int min_k, max_k; 2025-12-30T10:30:19,033 | ^~~~~ 2025-12-30T10:30:19,038 src/ViennaRNA/snoop.c:1395:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,039 1395 | int Loop_E; 2025-12-30T10:30:19,040 | ^~~~~~ 2025-12-30T10:30:19,041 src/ViennaRNA/snoop.c:1393:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,041 1393 | int Loop_D; 2025-12-30T10:30:19,042 | ^~~~~~ 2025-12-30T10:30:19,043 src/ViennaRNA/snoop.c:1392:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,043 1392 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,044 | ^~~~~~~~~ 2025-12-30T10:30:19,045 src/ViennaRNA/snoop.c:1392:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,045 1392 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,046 | ^~~~~~~~~ 2025-12-30T10:30:19,047 src/ViennaRNA/snoop.c:1366:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,047 1366 | int max_pos; 2025-12-30T10:30:19,048 | ^~~~~~~ 2025-12-30T10:30:19,056 src/ViennaRNA/snoop.c: In function ‘snoopfold’: 2025-12-30T10:30:19,058 src/ViennaRNA/snoop.c:1851:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,058 1851 | int min_k, max_k; 2025-12-30T10:30:19,059 | ^~~~~ 2025-12-30T10:30:19,060 src/ViennaRNA/snoop.c:1851:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,061 1851 | int min_k, max_k; 2025-12-30T10:30:19,061 | ^~~~~ 2025-12-30T10:30:19,066 src/ViennaRNA/snoop.c:1790:19: warning: variable ‘l1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,067 1790 | int i, j, l1, Emin = INF, i_min = 0, j_min = 0; 2025-12-30T10:30:19,068 | ^~ 2025-12-30T10:30:19,073 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS_fill’: 2025-12-30T10:30:19,075 src/ViennaRNA/snoop.c:2055:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,075 2055 | int min_k, max_k; 2025-12-30T10:30:19,076 | ^~~~~ 2025-12-30T10:30:19,078 src/ViennaRNA/snoop.c:2055:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,078 2055 | int min_k, max_k; 2025-12-30T10:30:19,079 | ^~~~~ 2025-12-30T10:30:19,083 src/ViennaRNA/snoop.c:1992:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,084 1992 | int Loop_E; 2025-12-30T10:30:19,085 | ^~~~~~ 2025-12-30T10:30:19,086 src/ViennaRNA/snoop.c:1990:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,087 1990 | int Loop_D; 2025-12-30T10:30:19,087 | ^~~~~~ 2025-12-30T10:30:19,089 src/ViennaRNA/snoop.c:1989:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,089 1989 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,090 | ^~~~~~~~~ 2025-12-30T10:30:19,092 src/ViennaRNA/snoop.c:1989:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,092 1989 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,093 | ^~~~~~~~~ 2025-12-30T10:30:19,094 src/ViennaRNA/snoop.c:1980:42: warning: variable ‘j_min’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,095 1980 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2025-12-30T10:30:19,095 | ^~~~~ 2025-12-30T10:30:19,097 src/ViennaRNA/snoop.c:1980:31: warning: variable ‘i_min’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,098 1980 | int i, j, Emin = INF, i_min = 0, j_min = 0; 2025-12-30T10:30:19,098 | ^~~~~ 2025-12-30T10:30:19,102 src/ViennaRNA/snoop.c: In function ‘snoop_subopt’: 2025-12-30T10:30:19,104 src/ViennaRNA/snoop.c:2142:25: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,105 2142 | int i, j, n1, n2, E, n_subopt = 0, n_max; 2025-12-30T10:30:19,105 | ^ 2025-12-30T10:30:19,111 src/ViennaRNA/snoop.c: In function ‘snoop_subopt_XS’: 2025-12-30T10:30:19,113 src/ViennaRNA/snoop.c:2477:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,114 2477 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2025-12-30T10:30:19,114 | ^~~~ 2025-12-30T10:30:19,115 src/ViennaRNA/snoop.c:2477:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,116 2477 | int begin_t, end_t, begin_q, end_q, and, pipe, k; 2025-12-30T10:30:19,116 | ^~~ 2025-12-30T10:30:19,118 src/ViennaRNA/snoop.c:2344:7: warning: variable ‘u’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,118 2344 | int u; 2025-12-30T10:30:19,119 | ^ 2025-12-30T10:30:19,120 src/ViennaRNA/snoop.c:2338:7: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,120 2338 | int Loop_D; 2025-12-30T10:30:19,121 | ^~~~~~ 2025-12-30T10:30:19,121 src/ViennaRNA/snoop.c:2337:29: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,122 2337 | int Duplex_El, Duplex_Er, Loop_E; 2025-12-30T10:30:19,122 | ^~~~~~ 2025-12-30T10:30:19,123 src/ViennaRNA/snoop.c:2337:18: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,124 2337 | int Duplex_El, Duplex_Er, Loop_E; 2025-12-30T10:30:19,124 | ^~~~~~~~~ 2025-12-30T10:30:19,125 src/ViennaRNA/snoop.c:2337:7: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,126 2337 | int Duplex_El, Duplex_Er, Loop_E; 2025-12-30T10:30:19,126 | ^~~~~~~~~ 2025-12-30T10:30:19,127 src/ViennaRNA/snoop.c:2329:16: warning: variable ‘n_max’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,128 2329 | int i, j, E, n_max; 2025-12-30T10:30:19,128 | ^~~~~ 2025-12-30T10:30:19,129 src/ViennaRNA/snoop.c:2329:13: warning: variable ‘E’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,130 2329 | int i, j, E, n_max; 2025-12-30T10:30:19,131 | ^ 2025-12-30T10:30:19,135 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack’: 2025-12-30T10:30:19,137 src/ViennaRNA/snoop.c:2628:26: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,138 2628 | int min_k, max_k; 2025-12-30T10:30:19,138 | ^~~~~ 2025-12-30T10:30:19,139 src/ViennaRNA/snoop.c:2628:19: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,140 2628 | int min_k, max_k; 2025-12-30T10:30:19,141 | ^~~~~ 2025-12-30T10:30:19,152 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2025-12-30T10:30:19,155 src/ViennaRNA/snoop.c:2954:24: warning: variable ‘max_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,155 2954 | int min_k, max_k; 2025-12-30T10:30:19,156 | ^~~~~ 2025-12-30T10:30:19,157 src/ViennaRNA/snoop.c:2954:17: warning: variable ‘min_k’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,158 2954 | int min_k, max_k; 2025-12-30T10:30:19,158 | ^~~~~ 2025-12-30T10:30:19,165 src/ViennaRNA/snoop.c:2882:13: warning: variable ‘Loop_E’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,165 2882 | int Loop_E; 2025-12-30T10:30:19,166 | ^~~~~~ 2025-12-30T10:30:19,167 src/ViennaRNA/snoop.c:2880:13: warning: variable ‘Loop_D’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,167 2880 | int Loop_D; 2025-12-30T10:30:19,168 | ^~~~~~ 2025-12-30T10:30:19,170 src/ViennaRNA/snoop.c:2879:24: warning: variable ‘Duplex_Er’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,170 2879 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,170 | ^~~~~~~~~ 2025-12-30T10:30:19,172 src/ViennaRNA/snoop.c:2879:13: warning: variable ‘Duplex_El’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,172 2879 | int Duplex_El, Duplex_Er; 2025-12-30T10:30:19,173 | ^~~~~~~~~ 2025-12-30T10:30:19,174 src/ViennaRNA/snoop.c:2864:7: warning: variable ‘max_pos_j’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,175 2864 | int max_pos_j = INF; 2025-12-30T10:30:19,175 | ^~~~~~~~~ 2025-12-30T10:30:19,177 src/ViennaRNA/snoop.c:2850:7: warning: variable ‘max_pos’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,177 2850 | int max_pos; 2025-12-30T10:30:19,178 | ^~~~~~~ 2025-12-30T10:30:19,183 src/ViennaRNA/snoop.c: In function ‘find_max_snoop_XS’: 2025-12-30T10:30:19,186 src/ViennaRNA/snoop.c:3202:52: warning: variable ‘pipe’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,186 3202 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2025-12-30T10:30:19,186 | ^~~~ 2025-12-30T10:30:19,188 src/ViennaRNA/snoop.c:3202:47: warning: variable ‘and’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:19,189 3202 | int begin_t, end_t, begin_q, end_q, and, pipe, i; 2025-12-30T10:30:19,190 | ^~~ 2025-12-30T10:30:20,174 src/ViennaRNA/snoop.c: In function ‘snoop_backtrack.constprop’: 2025-12-30T10:30:20,177 src/ViennaRNA/snoop.c:2814:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:30:20,177 2814 | free(struc_loop); 2025-12-30T10:30:20,178 | ^~~~~~~~~~~~~~~~ 2025-12-30T10:30:20,179 src/ViennaRNA/snoop.c:2564:12: note: ‘struc_loop’ was declared here 2025-12-30T10:30:20,180 2564 | char *struc_loop; 2025-12-30T10:30:20,180 | ^~~~~~~~~~ 2025-12-30T10:30:20,779 src/ViennaRNA/snoop.c: In function ‘alisnoop_backtrack.constprop’: 2025-12-30T10:30:20,780 src/ViennaRNA/snoop.c:1085:3: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:30:20,780 1085 | free(struc_loop); 2025-12-30T10:30:20,781 | ^~~~~~~~~~~~~~~~ 2025-12-30T10:30:20,782 src/ViennaRNA/snoop.c:747:10: note: ‘struc_loop’ was declared here 2025-12-30T10:30:20,782 747 | char *struc_loop; 2025-12-30T10:30:20,783 | ^~~~~~~~~~ 2025-12-30T10:30:24,688 src/ViennaRNA/snoop.c: In function ‘snoopfold_XS’: 2025-12-30T10:30:24,691 src/ViennaRNA/snoop.c:3431:12: warning: ‘u’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:30:24,692 3431 | return mfe; 2025-12-30T10:30:24,692 | ^~~ 2025-12-30T10:30:24,694 src/ViennaRNA/snoop.c:3282:13: note: ‘u’ was declared here 2025-12-30T10:30:24,695 3282 | int u; 2025-12-30T10:30:24,695 | ^ 2025-12-30T10:30:24,697 src/ViennaRNA/snoop.c:3505:12: warning: ‘struc_loop’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:30:24,698 3505 | char *struc_loop; 2025-12-30T10:30:24,698 | ^~~~~~~~~~ 2025-12-30T10:30:25,797 src/ViennaRNA/snoop.c: In function ‘Lsnoop_subopt_list_XS’: 2025-12-30T10:30:25,800 src/ViennaRNA/snoop.c:3042:19: warning: ‘min_j_colonne’ may be used uninitialized [-Wmaybe-uninitialized] 2025-12-30T10:30:25,801 3042 | position_j[i] = min_j_colonne; 2025-12-30T10:30:25,802 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2025-12-30T10:30:25,803 src/ViennaRNA/snoop.c:2863:7: note: ‘min_j_colonne’ was declared here 2025-12-30T10:30:25,803 2863 | int min_j_colonne; 2025-12-30T10:30:25,804 | ^~~~~~~~~~~~~ 2025-12-30T10:30:26,535 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/stringdist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/stringdist.o -fopenmp 2025-12-30T10:30:27,532 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/centroid.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/centroid.o -fopenmp 2025-12-30T10:30:27,995 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/mea.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/mea.o -fopenmp 2025-12-30T10:30:28,221 src/ViennaRNA/structures/mea.c: In function ‘compute_MEA’: 2025-12-30T10:30:28,222 src/ViennaRNA/structures/mea.c:252:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:28,223 252 | if (pp->j > jmax_gq) 2025-12-30T10:30:28,223 | ^ 2025-12-30T10:30:28,224 src/ViennaRNA/structures/mea.c:255:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:28,225 255 | if (pp->i < gq_circ_imin[pp->j]) 2025-12-30T10:30:28,226 | ^ 2025-12-30T10:30:28,226 src/ViennaRNA/structures/mea.c:258:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:28,227 258 | if (pp->i > gq_circ_imax[pp->j]) 2025-12-30T10:30:28,228 | ^ 2025-12-30T10:30:28,228 src/ViennaRNA/structures/mea.c:278:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:28,229 278 | if ((pp->i == i) && 2025-12-30T10:30:28,229 | ^~ 2025-12-30T10:30:28,230 src/ViennaRNA/structures/mea.c: In function ‘prune_plist’: 2025-12-30T10:30:28,231 src/ViennaRNA/structures/mea.c:457:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:30:28,231 457 | for (i = pc->i; i <= pc->j; i++) 2025-12-30T10:30:28,232 | ^~ 2025-12-30T10:30:28,233 src/ViennaRNA/structures/mea.c:462:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:30:28,234 462 | for (i = 1; i <= pc->j; i++) 2025-12-30T10:30:28,234 | ^~ 2025-12-30T10:30:28,235 src/ViennaRNA/structures/mea.c:485:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:30:28,236 485 | for (i = pc->i; i <= pc->j; i++) 2025-12-30T10:30:28,237 | ^~ 2025-12-30T10:30:28,237 src/ViennaRNA/structures/mea.c:496:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:28,238 496 | if (pc->i > n) { 2025-12-30T10:30:28,239 | ^ 2025-12-30T10:30:28,240 src/ViennaRNA/structures/mea.c:508:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:30:28,241 508 | for (i = pc->i; i <= pc->j; i++) 2025-12-30T10:30:28,241 | ^~ 2025-12-30T10:30:28,242 src/ViennaRNA/structures/mea.c:514:25: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:30:28,242 514 | for (i = 1; i <= pc->j; i++) 2025-12-30T10:30:28,243 | ^~ 2025-12-30T10:30:29,012 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_benchmark.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_benchmark.o -fopenmp 2025-12-30T10:30:29,378 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_dotbracket.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_dotbracket.o -fopenmp 2025-12-30T10:30:29,608 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_ptable’: 2025-12-30T10:30:29,609 src/ViennaRNA/structures/structure_dotbracket.c:193:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,610 193 | if (pt[i] > i) { 2025-12-30T10:30:29,610 | ^ 2025-12-30T10:30:29,611 src/ViennaRNA/structures/structure_dotbracket.c:196:24: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,612 196 | (pt[i] > stack[stack_cnt - 1])) { 2025-12-30T10:30:29,612 | ^ 2025-12-30T10:30:29,615 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_probs’: 2025-12-30T10:30:29,615 src/ViennaRNA/structures/structure_dotbracket.c:408:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,616 408 | for (j = 1; j <= length; j++) { 2025-12-30T10:30:29,617 | ^~ 2025-12-30T10:30:29,617 src/ViennaRNA/structures/structure_dotbracket.c:415:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,618 415 | for (i = j + 1; i <= length; i++) { 2025-12-30T10:30:29,619 | ^~ 2025-12-30T10:30:29,619 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_letter_structure’: 2025-12-30T10:30:29,620 src/ViennaRNA/structures/structure_dotbracket.c:517:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,621 517 | for (n = 0, k = 1; k <= bp[0].i; k++) { 2025-12-30T10:30:29,621 | ^~ 2025-12-30T10:30:29,622 src/ViennaRNA/structures/structure_dotbracket.c:520:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,623 520 | if ((x - 1 > 0) && (y + 1 <= length)) { 2025-12-30T10:30:29,623 | ^~ 2025-12-30T10:30:29,623 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_bps’: 2025-12-30T10:30:29,624 src/ViennaRNA/structures/structure_dotbracket.c:547:23: warning: unused variable ‘tmp’ [-Wunused-variable] 2025-12-30T10:30:29,624 547 | unsigned int i, j, tmp; 2025-12-30T10:30:29,625 | ^~~ 2025-12-30T10:30:29,625 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_bp_stack’: 2025-12-30T10:30:29,626 src/ViennaRNA/structures/structure_dotbracket.c:614:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,626 614 | for (k = 1; k <= bp[0].i; k++) { 2025-12-30T10:30:29,627 | ^~ 2025-12-30T10:30:29,627 src/ViennaRNA/structures/structure_dotbracket.c:617:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,628 617 | if (i > length) 2025-12-30T10:30:29,629 | ^ 2025-12-30T10:30:29,629 src/ViennaRNA/structures/structure_dotbracket.c:620:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,630 620 | if (j > length) 2025-12-30T10:30:29,630 | ^ 2025-12-30T10:30:29,631 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_db_from_plist’: 2025-12-30T10:30:29,632 src/ViennaRNA/structures/structure_dotbracket.c:658:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,632 658 | if (((*ptr).i < n) && ((*ptr).j <= n)) { 2025-12-30T10:30:29,633 | ^ 2025-12-30T10:30:29,634 src/ViennaRNA/structures/structure_dotbracket.c:658:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:29,635 658 | if (((*ptr).i < n) && ((*ptr).j <= n)) { 2025-12-30T10:30:29,635 | ^~ 2025-12-30T10:30:29,636 src/ViennaRNA/structures/structure_dotbracket.c: In function ‘vrna_gq_parse’: 2025-12-30T10:30:29,637 src/ViennaRNA/structures/structure_dotbracket.c:706:53: warning: unused variable ‘stacks’ [-Wunused-variable] 2025-12-30T10:30:29,637 706 | unsigned int i, n, end, start, stop, pre, tetrad, stacks, LL[4]; 2025-12-30T10:30:29,638 | ^~~~~~ 2025-12-30T10:30:30,767 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_helix.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_helix.o -fopenmp 2025-12-30T10:30:30,912 src/ViennaRNA/structures/structure_helix.c: In function ‘vrna_hx_merge’: 2025-12-30T10:30:30,913 src/ViennaRNA/structures/structure_helix.c:94:30: warning: unused variable ‘neighbors’ [-Wunused-variable] 2025-12-30T10:30:30,915 94 | int merged, i, j, s, neighbors, n; 2025-12-30T10:30:30,915 | ^~~~~~~~~ 2025-12-30T10:30:31,211 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_metrics.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_metrics.o -fopenmp 2025-12-30T10:30:31,431 src/ViennaRNA/structures/structure_metrics.c: In function ‘vrna_dist_mountain’: 2025-12-30T10:30:31,432 src/ViennaRNA/structures/structure_metrics.c:122:18: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:31,432 122 | if (pt1[i] > i) 2025-12-30T10:30:31,433 | ^ 2025-12-30T10:30:31,435 src/ViennaRNA/structures/structure_metrics.c:134:18: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:31,435 134 | if (pt2[i] > i) 2025-12-30T10:30:31,436 | ^ 2025-12-30T10:30:31,580 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_pairtable.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_pairtable.o -fopenmp 2025-12-30T10:30:31,799 src/ViennaRNA/structures/structure_pairtable.c: In function ‘vrna_pt_pk_remove’: 2025-12-30T10:30:31,799 src/ViennaRNA/structures/structure_pairtable.c:153:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:31,800 153 | if (ptable[i] > i) { 2025-12-30T10:30:31,801 | ^ 2025-12-30T10:30:32,167 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_problist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_problist.o -fopenmp 2025-12-30T10:30:32,392 src/ViennaRNA/structures/structure_problist.c: In function ‘wrap_plist’: 2025-12-30T10:30:32,393 src/ViennaRNA/structures/structure_problist.c:475:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2025-12-30T10:30:32,393 475 | for (m = 0; m < domains_up->motif_count; m++) { 2025-12-30T10:30:32,394 | ^ 2025-12-30T10:30:33,084 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_shapes.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_shapes.o -fopenmp 2025-12-30T10:30:33,226 src/ViennaRNA/structures/structure_shapes.c: In function ‘get_shrep’: 2025-12-30T10:30:33,227 src/ViennaRNA/structures/structure_shapes.c:251:11: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-30T10:30:33,227 251 | if (i < pt[i]) { 2025-12-30T10:30:33,228 | ^ 2025-12-30T10:30:33,228 src/ViennaRNA/structures/structure_shapes.c:261:15: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:33,229 261 | if (pt[i] > end) { 2025-12-30T10:30:33,229 | ^ 2025-12-30T10:30:33,230 src/ViennaRNA/structures/structure_shapes.c:268:15: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘short int’ [-Wsign-compare] 2025-12-30T10:30:33,231 268 | if (start < pt[start]) { 2025-12-30T10:30:33,232 | ^ 2025-12-30T10:30:33,233 src/ViennaRNA/structures/structure_shapes.c:289:21: warning: comparison of integer expressions of different signedness: ‘short int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:33,233 289 | if (pt[k] != l) { 2025-12-30T10:30:33,234 | ^~ 2025-12-30T10:30:33,790 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_tree.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_tree.o -fopenmp 2025-12-30T10:30:34,361 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/structures/structure_utils.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/structures/structure_utils.o -fopenmp 2025-12-30T10:30:34,740 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/subopt/subopt.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt/subopt.o -fopenmp 2025-12-30T10:30:35,117 src/ViennaRNA/subopt/subopt.c: In function ‘scan_m2’: 2025-12-30T10:30:35,118 src/ViennaRNA/subopt/subopt.c:1659:49: warning: variable ‘ij’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:35,119 1659 | int fi, cij, ckj, e_gq, ij, kj, element_energy, best_energy, 2025-12-30T10:30:35,119 | ^~ 2025-12-30T10:30:35,120 src/ViennaRNA/subopt/subopt.c:1659:33: warning: unused variable ‘cij’ [-Wunused-variable] 2025-12-30T10:30:35,121 1659 | int fi, cij, ckj, e_gq, ij, kj, element_energy, best_energy, 2025-12-30T10:30:35,121 | ^~~ 2025-12-30T10:30:35,134 src/ViennaRNA/subopt/subopt.c: In function ‘scan_circular’: 2025-12-30T10:30:35,135 src/ViennaRNA/subopt/subopt.c:2102:40: warning: variable ‘fM2’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:35,136 2102 | FcI, FcM, *fM2, *fM2_real, *fM1_new, *indx, *rtype, kl, tmpE, 2025-12-30T10:30:35,136 | ^~~ 2025-12-30T10:30:35,137 src/ViennaRNA/subopt/subopt.c:2101:72: warning: variable ‘fM1’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:35,137 2101 | int e, e_part, tmp_en, best_energy, *c, *fML, *fM1, Fc, FcH, 2025-12-30T10:30:35,138 | ^~~ 2025-12-30T10:30:35,138 src/ViennaRNA/subopt/subopt.c:2101:66: warning: variable ‘fML’ set but not used [-Wunused-but-set-variable] 2025-12-30T10:30:35,139 2101 | int e, e_part, tmp_en, best_energy, *c, *fML, *fM1, Fc, FcH, 2025-12-30T10:30:35,140 | ^~~ 2025-12-30T10:30:44,926 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/subopt/subopt_gquad.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt/subopt_gquad.o -fopenmp 2025-12-30T10:30:45,150 In file included from src/ViennaRNA/subopt/subopt_gquad.c:21: 2025-12-30T10:30:45,150 src/ViennaRNA/subopt/subopt_gquad.c: In function ‘vrna_gq_int_loop_subopt’: 2025-12-30T10:30:45,151 src/ViennaRNA/utils/basic.h:117:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:45,152 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-30T10:30:45,152 | ^ 2025-12-30T10:30:45,153 src/ViennaRNA/subopt/subopt_gquad.c:108:17: note: in expansion of macro ‘MAX2’ 2025-12-30T10:30:45,154 108 | minq = MAX2(c0, minq); 2025-12-30T10:30:45,154 | ^~~~ 2025-12-30T10:30:45,155 src/ViennaRNA/utils/basic.h:117:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:30:45,156 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-30T10:30:45,156 | ^~~ 2025-12-30T10:30:45,157 src/ViennaRNA/subopt/subopt_gquad.c:108:17: note: in expansion of macro ‘MAX2’ 2025-12-30T10:30:45,158 108 | minq = MAX2(c0, minq); 2025-12-30T10:30:45,158 | ^~~~ 2025-12-30T10:30:45,159 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:45,160 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:30:45,161 | ^ 2025-12-30T10:30:45,161 src/ViennaRNA/subopt/subopt_gquad.c:111:17: note: in expansion of macro ‘MIN2’ 2025-12-30T10:30:45,162 111 | maxq = MIN2(c0, maxq); 2025-12-30T10:30:45,163 | ^~~~ 2025-12-30T10:30:45,163 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:30:45,164 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:30:45,165 | ^~~ 2025-12-30T10:30:45,166 src/ViennaRNA/subopt/subopt_gquad.c:111:17: note: in expansion of macro ‘MIN2’ 2025-12-30T10:30:45,167 111 | maxq = MIN2(c0, maxq); 2025-12-30T10:30:45,168 | ^~~~ 2025-12-30T10:30:45,169 src/ViennaRNA/utils/basic.h:117:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:45,170 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-30T10:30:45,170 | ^ 2025-12-30T10:30:45,171 src/ViennaRNA/subopt/subopt_gquad.c:147:15: note: in expansion of macro ‘MAX2’ 2025-12-30T10:30:45,171 147 | minq = MAX2(c0, minq); 2025-12-30T10:30:45,172 | ^~~~ 2025-12-30T10:30:45,172 src/ViennaRNA/utils/basic.h:117:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:30:45,173 117 | #define MAX2(A, B) ((A) > (B) ? (A) : (B)) 2025-12-30T10:30:45,173 | ^~~ 2025-12-30T10:30:45,174 src/ViennaRNA/subopt/subopt_gquad.c:147:15: note: in expansion of macro ‘MAX2’ 2025-12-30T10:30:45,174 147 | minq = MAX2(c0, minq); 2025-12-30T10:30:45,175 | ^~~~ 2025-12-30T10:30:45,176 src/ViennaRNA/utils/basic.h:112:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2025-12-30T10:30:45,176 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:30:45,177 | ^ 2025-12-30T10:30:45,177 src/ViennaRNA/subopt/subopt_gquad.c:150:15: note: in expansion of macro ‘MIN2’ 2025-12-30T10:30:45,178 150 | maxq = MIN2(c0, maxq); 2025-12-30T10:30:45,178 | ^~~~ 2025-12-30T10:30:45,179 src/ViennaRNA/utils/basic.h:112:38: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘unsigned int’ due to unsignedness of other operand [-Wsign-compare] 2025-12-30T10:30:45,180 112 | #define MIN2(A, B) ((A) < (B) ? (A) : (B)) 2025-12-30T10:30:45,180 | ^~~ 2025-12-30T10:30:45,181 src/ViennaRNA/subopt/subopt_gquad.c:150:15: note: in expansion of macro ‘MIN2’ 2025-12-30T10:30:45,181 150 | maxq = MIN2(c0, maxq); 2025-12-30T10:30:45,182 | ^~~~ 2025-12-30T10:30:45,657 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/subopt/subopt_zuker.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/subopt/subopt_zuker.o -fopenmp 2025-12-30T10:30:47,978 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/treedist.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/treedist.o -fopenmp 2025-12-30T10:30:48,137 src/ViennaRNA/treedist.c: In function ‘sprint_aligned_trees’: 2025-12-30T10:30:48,138 src/ViennaRNA/treedist.c:735:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:30:48,138 735 | for (k = 0; k < strlen(ll); k++) { 2025-12-30T10:30:48,139 | ^ 2025-12-30T10:30:48,140 src/ViennaRNA/treedist.c:756:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:30:48,141 756 | for (k = 0; k < strlen(ll); k++) { 2025-12-30T10:30:48,142 | ^ 2025-12-30T10:30:48,142 src/ViennaRNA/treedist.c:782:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:30:48,143 782 | for (k = 0; k < strlen(ll) - strlen(ll1); k++) 2025-12-30T10:30:48,143 | ^ 2025-12-30T10:30:48,144 src/ViennaRNA/treedist.c:786:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:30:48,144 786 | for (k = 0; k < strlen(ll1) - strlen(ll); k++) 2025-12-30T10:30:48,145 | ^ 2025-12-30T10:30:48,146 src/ViennaRNA/treedist.c:789:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:30:48,147 789 | for (k = 0; k < strlen(ll); k++) 2025-12-30T10:30:48,147 | ^ 2025-12-30T10:30:48,148 src/ViennaRNA/treedist.c:791:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2025-12-30T10:30:48,148 791 | for (k = 0; k < strlen(ll); k++) 2025-12-30T10:30:48,149 | ^ 2025-12-30T10:30:49,191 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/unstructured_domains.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/unstructured_domains.o -fopenmp 2025-12-30T10:30:52,156 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/utils/cpu.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/cpu.o -fopenmp 2025-12-30T10:30:52,339 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions.o -fopenmp 2025-12-30T10:30:52,628 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -DVRNA_VERSION=\"2.7.2\" -DHAVE_CONFIG_H -DVRNA_LOG_NO_DEBUG_RNALIB=1 -DVRNA_WITH_SIMD_AVX512 -DVRNA_WITH_SIMD_SSE41 -DVRNA_WITH_SVM -DVRNA_WITH_NAVIEW_LAYOUT -DVRNA_WITH_OPENMP -I. -Isrc -Isrc/ViennaRNA -Isrc/dlib-20.0 -Isrc/cephes -Isrc/libsvm-3.35 -I/usr/include/python3.11 -c src/ViennaRNA/utils/higher_order_functions_avx512.c -o build/temp.linux-armv7l-cpython-311/src/ViennaRNA/utils/higher_order_functions_avx512.o -fopenmp -mavx512f 2025-12-30T10:30:52,644 arm-linux-gnueabihf-gcc: error: unrecognized command-line option ‘-mavx512f’ 2025-12-30T10:30:52,648 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2025-12-30T10:30:52,748 ERROR: [present-rich] Building wheel for viennarna (pyproject.toml) exited with 1 2025-12-30T10:30:52,762 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpym41ez88[/] 2025-12-30T10:30:52,763 [bold magenta]cwd[/]: /tmp/pip-wheel-xxbtxyv9/viennarna_4ba51d8ab6104d61976b7f6e7e3a171f 2025-12-30T10:30:52,763 Building wheel for viennarna (pyproject.toml): finished with status 'error' 2025-12-30T10:30:52,766 ERROR: Failed building wheel for viennarna 2025-12-30T10:30:52,768 Failed to build viennarna 2025-12-30T10:30:52,769 ERROR: Failed to build one or more wheels 2025-12-30T10:30:52,771 Exception information: 2025-12-30T10:30:52,771 Traceback (most recent call last): 2025-12-30T10:30:52,771 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2025-12-30T10:30:52,771 status = run_func(*args) 2025-12-30T10:30:52,771 ^^^^^^^^^^^^^^^ 2025-12-30T10:30:52,771 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2025-12-30T10:30:52,771 return func(self, options, args) 2025-12-30T10:30:52,771 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2025-12-30T10:30:52,771 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2025-12-30T10:30:52,771 raise CommandError("Failed to build one or more wheels") 2025-12-30T10:30:52,771 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2025-12-30T10:30:52,775 Removed build tracker: '/tmp/pip-build-tracker-6sdotecf'